Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 71143135
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|71143135 interferon, alpha 7 [Homo sapiens]
(189 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|71143135 interferon, alpha 7 [Homo sapiens] 377 e-105
gi|10835103 interferon, alpha 4 [Homo sapiens] 348 1e-96
gi|4504589 interferon, alpha 10 [Homo sapiens] 347 5e-96
gi|10880985 interferon, alpha 17 [Homo sapiens] 344 3e-95
gi|169791013 interferon, alpha 21 [Homo sapiens] 327 3e-90
gi|4504593 interferon, alpha 16 [Homo sapiens] 322 1e-88
gi|170763491 interferon, alpha 14 [Homo sapiens] 312 1e-85
gi|4504597 interferon, alpha 5 [Homo sapiens] 310 4e-85
gi|11128015 interferon, alpha 6 [Homo sapiens] 293 6e-80
gi|13128950 interferon, alpha 1 [Homo sapiens] 292 1e-79
gi|194394174 interferon, alpha 13 precursor [Homo sapiens] 291 3e-79
gi|11067751 interferon, alpha 2 [Homo sapiens] 290 4e-79
gi|42476083 interferon, alpha 8 [Homo sapiens] 288 2e-78
gi|4504605 interferon, omega 1 [Homo sapiens] 206 1e-53
gi|28882045 interferon, epsilon [Homo sapiens] 103 9e-23
gi|4504603 interferon, beta 1, fibroblast [Homo sapiens] 97 6e-21
gi|112789564 interferon kappa precursor [Homo sapiens] 80 1e-15
gi|58219054 pro-apoptotic Bcl-2 protein [Homo sapiens] 29 2.1
gi|34577120 mitochondrial translational release factor 1 [Homo s... 29 2.8
gi|239741279 PREDICTED: similar to FLJ00310 protein [Homo sapiens] 28 6.1
gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [... 28 6.1
gi|8393956 serine (or cysteine) proteinase inhibitor, clade B (o... 27 8.0
>gi|71143135 interferon, alpha 7 [Homo sapiens]
Length = 189
Score = 377 bits (968), Expect = e-105
Identities = 189/189 (100%), Positives = 189/189 (100%)
Query: 1 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR 60
MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR
Sbjct: 1 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR 60
Query: 61 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
Sbjct: 61 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
Query: 121 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN 180
ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN
Sbjct: 121 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN 180
Query: 181 LKKGLRRKD 189
LKKGLRRKD
Sbjct: 181 LKKGLRRKD 189
>gi|10835103 interferon, alpha 4 [Homo sapiens]
Length = 189
Score = 348 bits (894), Expect = 1e-96
Identities = 177/189 (93%), Positives = 179/189 (94%)
Query: 1 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR 60
MA SFSLLM VLVLSYKSICSLGCDLPQTHSL NRRALILLAQMGRIS FSCLKDRH+F
Sbjct: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG 60
Query: 61 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
FPEEEFDGHQFQK QAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
Sbjct: 61 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
Query: 121 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN 180
ACVIQEVGVEETPLMNED ILAVRKYFQRITLYL EKKYSPCAWEVVRAEIMRS SFSTN
Sbjct: 121 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 180
Query: 181 LKKGLRRKD 189
L+K LRRKD
Sbjct: 181 LQKRLRRKD 189
>gi|4504589 interferon, alpha 10 [Homo sapiens]
Length = 189
Score = 347 bits (889), Expect = 5e-96
Identities = 174/189 (92%), Positives = 180/189 (95%)
Query: 1 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR 60
MA SFSLLM VLVLSYKSICSLGCDLPQTHSL NRRALILL QMGRISPFSCLKDRH+FR
Sbjct: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 60
Query: 61 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
P+EEFDG+QFQK QAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
Sbjct: 61 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
Query: 121 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN 180
ACVIQEVGVEETPLMNED ILAVRKYFQRITLYL+E+KYSPCAWEVVRAEIMRS SFSTN
Sbjct: 121 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 180
Query: 181 LKKGLRRKD 189
L+K LRRKD
Sbjct: 181 LQKRLRRKD 189
>gi|10880985 interferon, alpha 17 [Homo sapiens]
Length = 189
Score = 344 bits (882), Expect = 3e-95
Identities = 174/189 (92%), Positives = 180/189 (95%)
Query: 1 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR 60
MA SFSLLM VLVLSYKSICSLGCDLPQTHSL NRRALILLAQMGRISPFSCLKDRH+F
Sbjct: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
Query: 61 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
P+EEFDG+QFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLN+LE
Sbjct: 61 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 120
Query: 121 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN 180
ACVIQEVG+EETPLMNED ILAVRKYFQRITLYL EKKYSPCAWEVVRAEIMRS SFSTN
Sbjct: 121 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 180
Query: 181 LKKGLRRKD 189
L+K LRRKD
Sbjct: 181 LQKILRRKD 189
>gi|169791013 interferon, alpha 21 [Homo sapiens]
Length = 189
Score = 327 bits (839), Expect = 3e-90
Identities = 166/189 (87%), Positives = 174/189 (92%)
Query: 1 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR 60
MA SFSLLM VLVLSYKSICSLGCDLPQTHSL NRRALILLAQMGRISPFSCLKDRH+F
Sbjct: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
Query: 61 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
FP+EEFDG+QFQK QAISVLHEMIQQTFNLFST+DSSA WEQSLLEKFSTEL QQLNDLE
Sbjct: 61 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 120
Query: 121 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN 180
ACVIQEVGVEETPLMN D ILAV+KYFQRITLYL EKKYSPCAWEVVRAEIMRSFS S
Sbjct: 121 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 180
Query: 181 LKKGLRRKD 189
++ LRRK+
Sbjct: 181 FQERLRRKE 189
>gi|4504593 interferon, alpha 16 [Homo sapiens]
Length = 189
Score = 322 bits (825), Expect = 1e-88
Identities = 162/189 (85%), Positives = 173/189 (91%)
Query: 1 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR 60
MA SFSLLM VLVLSYKSICSLGCDLPQTHSL NRRALILLAQMGRIS FSCLKDR++F
Sbjct: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 60
Query: 61 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
FP+E FDG+QFQK QAIS HEMIQQTFNLFST+DSSAAW+++LL+KF EL+QQLNDLE
Sbjct: 61 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 120
Query: 121 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN 180
ACV QEVGVEE LMNED ILAVRKYFQRITLYLM KKYSPCAWEVVRAEIMRSFSFSTN
Sbjct: 121 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 180
Query: 181 LKKGLRRKD 189
L+KGLRRKD
Sbjct: 181 LQKGLRRKD 189
>gi|170763491 interferon, alpha 14 [Homo sapiens]
Length = 189
Score = 312 bits (800), Expect = 1e-85
Identities = 153/189 (80%), Positives = 173/189 (91%)
Query: 1 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR 60
MA F+L+M ++VLS KS CSLGC+L QTHSL NRR L+L+AQM RISPFSCLKDRH+F
Sbjct: 1 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 60
Query: 61 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
FP+EEFDG+QFQK QAISVLHEM+QQTFNLFST++SSAAW+++LLEKF EL+QQ+NDLE
Sbjct: 61 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 120
Query: 121 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN 180
ACVIQEVGVEETPLMNED ILAV+KYFQRITLYLMEKKYSPCAWEVVRAEIMRS SFSTN
Sbjct: 121 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 180
Query: 181 LKKGLRRKD 189
L+K LRRKD
Sbjct: 181 LQKRLRRKD 189
>gi|4504597 interferon, alpha 5 [Homo sapiens]
Length = 189
Score = 310 bits (795), Expect = 4e-85
Identities = 151/189 (79%), Positives = 171/189 (90%)
Query: 1 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR 60
MA F LLM ++VL+ KSICSLGCDLPQTHSL NRR L+++AQMGRISPFSCLKDRH+F
Sbjct: 1 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 60
Query: 61 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
FP+EEFDG+QFQK QAISVLHEMIQQTFNLFST+DSSA W+++LL+KF TELYQQLNDLE
Sbjct: 61 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 120
Query: 121 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN 180
AC++QEVGVE+TPLMN D IL VRKYFQRITLYL EKKYSPCAWEVVRAEIMRSFS S N
Sbjct: 121 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 180
Query: 181 LKKGLRRKD 189
L++ LRRK+
Sbjct: 181 LQERLRRKE 189
>gi|11128015 interferon, alpha 6 [Homo sapiens]
Length = 189
Score = 293 bits (750), Expect = 6e-80
Identities = 147/189 (77%), Positives = 166/189 (87%)
Query: 1 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR 60
MA F+LLM ++VLS KS CSL CDLPQTHSL +RR ++LLAQM RIS FSCLKDRH+FR
Sbjct: 1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 60
Query: 61 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
FP+EEFDG+QFQK +AISVLHE+IQQTFNLFST+DSS AW++ LL+K TELYQQLNDLE
Sbjct: 61 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 120
Query: 121 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN 180
ACV+QEV V TPLMNED ILAVRKYFQRITLYL EKKYSPCAWEVVRAEIMRSFS S N
Sbjct: 121 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 180
Query: 181 LKKGLRRKD 189
L++ LRRK+
Sbjct: 181 LQERLRRKE 189
>gi|13128950 interferon, alpha 1 [Homo sapiens]
Length = 189
Score = 292 bits (748), Expect = 1e-79
Identities = 145/189 (76%), Positives = 165/189 (87%)
Query: 1 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR 60
MA F+LLMV++VLS KS CSLGCDLP+THSL NRR L+LLAQM RISP SCL DRH+F
Sbjct: 1 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 60
Query: 61 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
FP+EEFDG+QFQK AISVLHE+IQQ FNLF+T+DSSAAW++ LL+KF TELYQQLNDLE
Sbjct: 61 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 120
Query: 121 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN 180
ACV+QE V ETPLMN D ILAV+KYF+RITLYL EKKYSPCAWEVVRAEIMRS S STN
Sbjct: 121 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 180
Query: 181 LKKGLRRKD 189
L++ LRRK+
Sbjct: 181 LQERLRRKE 189
>gi|194394174 interferon, alpha 13 precursor [Homo sapiens]
Length = 190
Score = 291 bits (744), Expect = 3e-79
Identities = 144/189 (76%), Positives = 164/189 (86%)
Query: 1 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR 60
MA F+LLM ++VLS KS CSLGCDLP+THSL NRR L+LLAQM RISP SCL DRH+F
Sbjct: 2 MASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 61
Query: 61 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
FP+EEFDG+QFQK AISVLHE+IQQ FNLF+T+DSSAAW++ LL+KF TELYQQLNDLE
Sbjct: 62 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 121
Query: 121 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN 180
ACV+QE V ETPLMN D ILAV+KYF+RITLYL EKKYSPCAWEVVRAEIMRS S STN
Sbjct: 122 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 181
Query: 181 LKKGLRRKD 189
L++ LRRK+
Sbjct: 182 LQERLRRKE 190
>gi|11067751 interferon, alpha 2 [Homo sapiens]
Length = 188
Score = 290 bits (743), Expect = 4e-79
Identities = 147/189 (77%), Positives = 166/189 (87%), Gaps = 1/189 (0%)
Query: 1 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR 60
MA +F+LL+ +LVLS KS CS+GCDLPQTHSL +RR L+LLAQM RIS FSCLKDRH+F
Sbjct: 1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG 60
Query: 61 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
FP+EEF G+QFQK + I VLHEMIQQ FNLFST+DSSAAW+++LL+KF TELYQQLNDLE
Sbjct: 61 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE 119
Query: 121 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN 180
ACVIQ VGV ETPLM ED ILAVRKYFQRITLYL EKKYSPCAWEVVRAEIMRSFS STN
Sbjct: 120 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN 179
Query: 181 LKKGLRRKD 189
L++ LR K+
Sbjct: 180 LQESLRSKE 188
>gi|42476083 interferon, alpha 8 [Homo sapiens]
Length = 189
Score = 288 bits (737), Expect = 2e-78
Identities = 147/189 (77%), Positives = 165/189 (87%)
Query: 1 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR 60
MA +F LL+ ++VLSYKS SLGCDLPQTHSL NRRALILLAQM RISPFSCLKDRH+F
Sbjct: 1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE 60
Query: 61 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
FP+EEFD QFQK QAISVLHEMIQQTFNLFST+DSSAA +++LL++F EL QQLNDLE
Sbjct: 61 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE 120
Query: 121 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN 180
+CV+QEVGV E+PLM ED ILAVRKYFQRITLYL EKKYS CAWEVVRAEIMRSFS S N
Sbjct: 121 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN 180
Query: 181 LKKGLRRKD 189
L+K L+ K+
Sbjct: 181 LQKRLKSKE 189
>gi|4504605 interferon, omega 1 [Homo sapiens]
Length = 195
Score = 206 bits (523), Expect = 1e-53
Identities = 105/189 (55%), Positives = 130/189 (68%)
Query: 1 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR 60
MA F LL +++ SY + SLGCDLPQ H L +R L+LL QM RISPF CLKDR +FR
Sbjct: 1 MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFR 60
Query: 61 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
FP+E G Q QK +SVLHEM+QQ F+LF TE SSAAW +LL++ T L+QQL LE
Sbjct: 61 FPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLE 120
Query: 121 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN 180
C++Q VG E+ L +R+YFQ I +YL EKKYS CAWEVVR EIM+S STN
Sbjct: 121 TCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTN 180
Query: 181 LKKGLRRKD 189
+++ LR KD
Sbjct: 181 MQERLRSKD 189
>gi|28882045 interferon, epsilon [Homo sapiens]
Length = 208
Score = 103 bits (257), Expect = 9e-23
Identities = 57/155 (36%), Positives = 87/155 (56%)
Query: 34 NRRALILLAQMGRISPFSCLKDRHEFRFPEEEFDGHQFQKTQAISVLHEMIQQTFNLFST 93
N+ +L LL ++ +S CL R F P++ Q+QK +++LHEM+QQ F+LF
Sbjct: 35 NQESLKLLNKLQTLSIQQCLPHRKNFLLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRA 94
Query: 94 EDSSAAWEQSLLEKFSTELYQQLNDLEACVIQEVGVEETPLMNEDFILAVRKYFQRITLY 153
S WE++ EKF +L+QQL LEA + E L +++ L V+ YF+RI Y
Sbjct: 95 NISLDGWEENHTEKFLIQLHQQLEYLEALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDY 154
Query: 154 LMEKKYSPCAWEVVRAEIMRSFSFSTNLKKGLRRK 188
L + YS CAW +V+ EI R F +L + L ++
Sbjct: 155 LENQDYSTCAWAIVQVEISRCLFFVFSLTEKLSKQ 189
>gi|4504603 interferon, beta 1, fibroblast [Homo sapiens]
Length = 187
Score = 97.4 bits (241), Expect = 6e-21
Identities = 50/135 (37%), Positives = 75/135 (55%)
Query: 52 CLKDRHEFRFPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTE 111
CLKDR F PEE QFQK A ++EM+Q F +F + SS W ++++E
Sbjct: 52 CLKDRMNFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLAN 111
Query: 112 LYQQLNDLEACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEI 171
+Y Q+N L+ + +++ E+ L +++Y+ RI YL K+YS CAW +VR EI
Sbjct: 112 VYHQINHLKTVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEI 171
Query: 172 MRSFSFSTNLKKGLR 186
+R+F F L LR
Sbjct: 172 LRNFYFINRLTGYLR 186
>gi|112789564 interferon kappa precursor [Homo sapiens]
Length = 207
Score = 79.7 bits (195), Expect = 1e-15
Identities = 59/195 (30%), Positives = 88/195 (45%), Gaps = 15/195 (7%)
Query: 8 LMVVLVLSYKSICSLGCDLPQTHSLR-NRRALILLAQMGRISPFSCLKDRHEFRFPEEEF 66
L +++ + SL C+L H R + L L+ M P CL++ F P+E
Sbjct: 14 LEILMGIFIAGTLSLDCNLLNVHLRRVTWQNLRHLSSMSNSFPVECLRENIAFELPQEFL 73
Query: 67 DGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLEACVIQE 126
Q K +EM Q FN+FS + + W++ L++ L QQ L C+ ++
Sbjct: 74 QYTQPMKRDIKKAFYEMSLQAFNIFS-QHTFKYWKERHLKQIQIGLDQQAEYLNQCLEED 132
Query: 127 VGV-EETPLMNEDFI------------LAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMR 173
E+ M E+ + L +R+YF RI +L EKKYS CAWE+VR EI R
Sbjct: 133 KNENEDMKEMKENEMKPSEARVPQLSSLELRRYFHRIDNFLKEKKYSDCAWEIVRVEIRR 192
Query: 174 SFSFSTNLKKGLRRK 188
+ RRK
Sbjct: 193 CLYYFYKFTALFRRK 207
>gi|58219054 pro-apoptotic Bcl-2 protein [Homo sapiens]
Length = 163
Score = 29.3 bits (64), Expect = 2.1
Identities = 18/76 (23%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 73 KTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLEACVIQEVGVEET 132
K Q ++L + ++ + +DSS A+E++ L S +L + + + V+ +V + T
Sbjct: 81 KGQTGAILQDTVESLSKTWCAQDSSLAYERAFL-AVSVKLLEYMAHIAPEVVGQVAIPMT 139
Query: 133 PLMNEDFILAVRKYFQ 148
++N + A+R++ Q
Sbjct: 140 GMINGN--QAIREFIQ 153
>gi|34577120 mitochondrial translational release factor 1 [Homo
sapiens]
Length = 445
Score = 28.9 bits (63), Expect = 2.8
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 52 CLKDRHEFRFPEEEFDGH-QFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFST 110
C H +F + D Q + +LH + + + +D+ W+ L+K+
Sbjct: 21 CHIQLHSHQFRQIHLDTRLQVFRQNRNCILHLLSKNWSRRYCHQDTKMLWKHKALQKYME 80
Query: 111 ELYQQLNDLEACVIQEVGVEE 131
L ++ LE C +Q + V E
Sbjct: 81 NLSKEYQTLEQC-LQHIPVNE 100
>gi|239741279 PREDICTED: similar to FLJ00310 protein [Homo sapiens]
Length = 561
Score = 27.7 bits (60), Expect = 6.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 76 AISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTEL 112
A+S+LHE+ + ED S A +Q + EK S L
Sbjct: 62 AVSILHELCVDSLPTLDDEDLSVATKQCVPEKVSEPL 98
>gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [Homo
sapiens]
Length = 1937
Score = 27.7 bits (60), Expect = 6.1
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 80 LHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLEACVIQE 126
L E QQT + E+ ++L K T+L QQ++DLE + QE
Sbjct: 1002 LQETHQQTLDDLQAEEDKV----NILTKAKTKLEQQVDDLEGSLEQE 1044
>gi|8393956 serine (or cysteine) proteinase inhibitor, clade B
(ovalbumin), member 13 [Homo sapiens]
Length = 391
Score = 27.3 bits (59), Expect = 8.0
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 94 EDSSAAWEQSLLEKFSTELYQQLNDLEACVIQEVGVEETPLMNEDFILAVRKYF 147
E++ A +Q +KF TE+ + ND E + + E+T L + ++ V KY+
Sbjct: 77 ENTEAVHQQ--FQKFLTEISKLTNDYELNITNRLFGEKTYLFLQKYLDYVEKYY 128
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.135 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,372,593
Number of Sequences: 37866
Number of extensions: 247961
Number of successful extensions: 689
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 667
Number of HSP's gapped (non-prelim): 23
length of query: 189
length of database: 18,247,518
effective HSP length: 96
effective length of query: 93
effective length of database: 14,612,382
effective search space: 1358951526
effective search space used: 1358951526
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.