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Search of human proteins with 13899273
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13899273 transmembrane protein 47 [Homo sapiens]
(181 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13899273 transmembrane protein 47 [Homo sapiens] 370 e-103
gi|31377722 PERP, TP53 apoptosis effector [Homo sapiens] 90 9e-19
gi|4505907 peripheral myelin protein 22 [Homo sapiens] 39 0.003
gi|24430165 peripheral myelin protein 22 [Homo sapiens] 39 0.003
gi|24430163 peripheral myelin protein 22 [Homo sapiens] 39 0.003
gi|6912316 claudin 17 [Homo sapiens] 39 0.003
gi|4503563 epithelial membrane protein 3 [Homo sapiens] 38 0.005
gi|239916002 lens intrinsic membrane protein 2, 19kDa isoform 2 ... 35 0.027
gi|169211272 PREDICTED: germ cell-specific gene 1-like protein 2... 35 0.027
gi|169211660 PREDICTED: germ cell-specific gene 1-like protein 2... 35 0.027
gi|169210878 PREDICTED: germ cell-specific gene 1-like protein 2... 35 0.027
gi|22748765 claudin domain containing 2 [Homo sapiens] 35 0.046
gi|21361300 lens intrinsic membrane protein 2, 19kDa isoform 1 [... 32 0.30
gi|169171977 PREDICTED: hypothetical protein [Homo sapiens] 31 0.51
gi|169171016 PREDICTED: hypothetical protein [Homo sapiens] 31 0.51
gi|239509059 PREDICTED: hypothetical protein [Homo sapiens] 31 0.51
gi|10863887 claudin 1 [Homo sapiens] 31 0.51
gi|124107616 claudin 23 [Homo sapiens] 31 0.51
gi|7305013 lysophosphatidic acid receptor 2 [Homo sapiens] 29 1.9
gi|9966781 claudin 2 [Homo sapiens] 29 2.5
gi|5031865 lipoma HMGIC fusion partner [Homo sapiens] 28 4.3
gi|189011544 ubiquitously transcribed tetratricopeptide repeat, ... 28 5.6
gi|18921093 transient receptor potential cation channel, subfami... 27 9.6
>gi|13899273 transmembrane protein 47 [Homo sapiens]
Length = 181
Score = 370 bits (949), Expect = e-103
Identities = 181/181 (100%), Positives = 181/181 (100%)
Query: 1 MASAGSGMEEVRVSVLTPLKLVGLVCIFLALCLDLGAVLSPAWVTADHQYYLSLWESCRK 60
MASAGSGMEEVRVSVLTPLKLVGLVCIFLALCLDLGAVLSPAWVTADHQYYLSLWESCRK
Sbjct: 1 MASAGSGMEEVRVSVLTPLKLVGLVCIFLALCLDLGAVLSPAWVTADHQYYLSLWESCRK 60
Query: 61 PASLDIWHCESTLSSDWQIATLALLLGGAAIILIAFLVGLISICVGSRRRFYRPVAVMLF 120
PASLDIWHCESTLSSDWQIATLALLLGGAAIILIAFLVGLISICVGSRRRFYRPVAVMLF
Sbjct: 61 PASLDIWHCESTLSSDWQIATLALLLGGAAIILIAFLVGLISICVGSRRRFYRPVAVMLF 120
Query: 121 AAVVLQVCSLVLYPIKFIETVSLKIYHEFNWGYGLAWGATIFSFGGAILYCLNPKNYEDY 180
AAVVLQVCSLVLYPIKFIETVSLKIYHEFNWGYGLAWGATIFSFGGAILYCLNPKNYEDY
Sbjct: 121 AAVVLQVCSLVLYPIKFIETVSLKIYHEFNWGYGLAWGATIFSFGGAILYCLNPKNYEDY 180
Query: 181 Y 181
Y
Sbjct: 181 Y 181
>gi|31377722 PERP, TP53 apoptosis effector [Homo sapiens]
Length = 193
Score = 90.1 bits (222), Expect = 9e-19
Identities = 51/158 (32%), Positives = 80/158 (50%), Gaps = 9/158 (5%)
Query: 30 ALCLDLGAVLSPAWV-TADHQYYLSLWESCRKPASLDIWH---CESTLSSDWQIATLALL 85
A+ D+ A+ W+ ++DH SLW C + + C+S + W A A+L
Sbjct: 22 AIAFDIIALAGRGWLQSSDHGQTSSLWWKCSQEGGGSGSYEEGCQSLMEYAWGRAAAAML 81
Query: 86 LGGAAIILIAFLVGLISICVGSRRRFYRPVAVMLFAAVVLQVCSLVLYPIKFIETVSL-- 143
G I++I F++ ++C F R + +L A V Q+ SLV+YP+K+ +T +L
Sbjct: 82 FCGFIILVICFILSFFALCGPQMLVFLRVIGGLLALAAVFQIISLVIYPVKYTQTFTLHA 141
Query: 144 --KIYHEFNWGYGLAWGATIFSFGGAILYCLNPKNYED 179
+ + +NW YG W ATI G A +C P NYED
Sbjct: 142 NPAVTYIYNWAYGFGWAATIILIGCAFFFCCLP-NYED 178
>gi|4505907 peripheral myelin protein 22 [Homo sapiens]
Length = 160
Score = 38.5 bits (88), Expect = 0.003
Identities = 34/158 (21%), Positives = 73/158 (46%), Gaps = 9/158 (5%)
Query: 19 LKLVGLVCIFLA-LCLDLGAVLSPAWVTADHQYYLSLWESCRKPASLDIWHCESTLSSDW 77
L L+ ++ + +A L L + + W+ + + LW++C +S ++ HC S+ ++W
Sbjct: 3 LLLLSIIVLHVAVLVLLFVSTIVSQWIVGNG-HATDLWQNCSTSSSGNVHHCFSSSPNEW 61
Query: 78 ---QIATLALLLGGAAIILIAFLVGLISICVGSRRRFYRPVAVMLFAAVVLQVCSLVLYP 134
AT+ L + + + L F L ++ G RFY + A + + + + +Y
Sbjct: 62 LQSVQATMILSIIFSILSLFLFFCQLFTLTKGG--RFYITGIFQILAGLCV-MSAAAIYT 118
Query: 135 IKFIETVSLKIYHEFNWGYGLAWGATIFSFGGAILYCL 172
++ E L + + + Y LAW A + ++Y +
Sbjct: 119 VRHPEW-HLNSDYSYGFAYILAWVAFPLALLSGVIYVI 155
>gi|24430165 peripheral myelin protein 22 [Homo sapiens]
Length = 160
Score = 38.5 bits (88), Expect = 0.003
Identities = 34/158 (21%), Positives = 73/158 (46%), Gaps = 9/158 (5%)
Query: 19 LKLVGLVCIFLA-LCLDLGAVLSPAWVTADHQYYLSLWESCRKPASLDIWHCESTLSSDW 77
L L+ ++ + +A L L + + W+ + + LW++C +S ++ HC S+ ++W
Sbjct: 3 LLLLSIIVLHVAVLVLLFVSTIVSQWIVGNG-HATDLWQNCSTSSSGNVHHCFSSSPNEW 61
Query: 78 ---QIATLALLLGGAAIILIAFLVGLISICVGSRRRFYRPVAVMLFAAVVLQVCSLVLYP 134
AT+ L + + + L F L ++ G RFY + A + + + + +Y
Sbjct: 62 LQSVQATMILSIIFSILSLFLFFCQLFTLTKGG--RFYITGIFQILAGLCV-MSAAAIYT 118
Query: 135 IKFIETVSLKIYHEFNWGYGLAWGATIFSFGGAILYCL 172
++ E L + + + Y LAW A + ++Y +
Sbjct: 119 VRHPEW-HLNSDYSYGFAYILAWVAFPLALLSGVIYVI 155
>gi|24430163 peripheral myelin protein 22 [Homo sapiens]
Length = 160
Score = 38.5 bits (88), Expect = 0.003
Identities = 34/158 (21%), Positives = 73/158 (46%), Gaps = 9/158 (5%)
Query: 19 LKLVGLVCIFLA-LCLDLGAVLSPAWVTADHQYYLSLWESCRKPASLDIWHCESTLSSDW 77
L L+ ++ + +A L L + + W+ + + LW++C +S ++ HC S+ ++W
Sbjct: 3 LLLLSIIVLHVAVLVLLFVSTIVSQWIVGNG-HATDLWQNCSTSSSGNVHHCFSSSPNEW 61
Query: 78 ---QIATLALLLGGAAIILIAFLVGLISICVGSRRRFYRPVAVMLFAAVVLQVCSLVLYP 134
AT+ L + + + L F L ++ G RFY + A + + + + +Y
Sbjct: 62 LQSVQATMILSIIFSILSLFLFFCQLFTLTKGG--RFYITGIFQILAGLCV-MSAAAIYT 118
Query: 135 IKFIETVSLKIYHEFNWGYGLAWGATIFSFGGAILYCL 172
++ E L + + + Y LAW A + ++Y +
Sbjct: 119 VRHPEW-HLNSDYSYGFAYILAWVAFPLALLSGVIYVI 155
>gi|6912316 claudin 17 [Homo sapiens]
Length = 224
Score = 38.5 bits (88), Expect = 0.003
Identities = 45/183 (24%), Positives = 75/183 (40%), Gaps = 33/183 (18%)
Query: 18 PLKLVGLVCIFLALCLDLGAVLSPAW---------VTADHQYYLSLWESCRKPASLDIWH 68
PL++ GLV FL + L L P W + + + LW +C + A + +
Sbjct: 5 PLQIAGLVLGFLGMVGTLATTLLPQWRVSAFVGSNIIVFERLWEGLWMNCIRQARVRL-Q 63
Query: 69 CE---STLSSDWQIATL-ALLLGGAAIILIAFLVGLISI----CVGSRRRFYRPVAVMLF 120
C+ S L+ + T AL+ A+ LIA L+G+ + C GS R A +L
Sbjct: 64 CKFYSSLLALPPALETARALMCVAVALSLIALLIGICGMKQVQCTGSNE---RAKAYLLG 120
Query: 121 AAVVLQVCS--LVLYPIKFIETVSLKIYH----------EFNWGYGLAWGATIFSFGGAI 168
+ VL + + VL P+ + + ++ ++ E L W + F G
Sbjct: 121 TSGVLFILTGIFVLIPVSWTANIIIRDFYNPAIHIGQKRELGAALFLGWASAAVLFIGGG 180
Query: 169 LYC 171
L C
Sbjct: 181 LLC 183
>gi|4503563 epithelial membrane protein 3 [Homo sapiens]
Length = 163
Score = 37.7 bits (86), Expect = 0.005
Identities = 32/153 (20%), Positives = 55/153 (35%), Gaps = 1/153 (0%)
Query: 19 LKLVGLVCIFLALCLDLGAVLSPAWVTADHQYYLSLWESCRKPASLDIWHCESTLSSDWQ 78
L LV L L L A L +W T + L+LW C W C + + W
Sbjct: 4 LLLVVSALHILILILLFVATLDKSWWTLPGKESLNLWYDCTWNNDTKTWACSNVSENGWL 63
Query: 79 IATLALLLGGAAIILIAFLVGLISICVGSRRRFYRPVAVMLFAAVVLQVCSLVLYPIKFI 138
A L++ + ++F++ + + R + + V ++Y I
Sbjct: 64 KAVQVLMVLSLILCCLSFILFMFQLYTMRRGGLFYATGLCQLCTSVAVFTGALIYAIHAE 123
Query: 139 ETVSLKIY-HEFNWGYGLAWGATIFSFGGAILY 170
E + F + + LAW A + I+Y
Sbjct: 124 EILEKHPRGGSFGYCFALAWVAFPLALVSGIIY 156
>gi|239916002 lens intrinsic membrane protein 2, 19kDa isoform 2
[Homo sapiens]
Length = 173
Score = 35.4 bits (80), Expect = 0.027
Identities = 36/159 (22%), Positives = 68/159 (42%), Gaps = 20/159 (12%)
Query: 23 GLVCIFLALCLDLGAVLSPAWVTADHQYYLS-------LWESCRKPASLDIWHCESTLSS 75
GL C ++ L + A+ + W+ QY LS LW C + ++ +
Sbjct: 8 GLFCAWVGTILLVVAMATDHWM----QYRLSGSFAHQGLWRYCLGNKC----YLQTDSIA 59
Query: 76 DWQIATLALLLGGAAIILIAFLVGLISIC-VGSRRRFYRPVA--VMLFAAVVLQVCSLVL 132
W AT A ++ A + ++G+++ + R RP + +M F++ + V +L +
Sbjct: 60 YWN-ATRAFMILSALCAISGIIMGIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAI 118
Query: 133 YPIKFIETVSLKIYH-EFNWGYGLAWGATIFSFGGAILY 170
Y + + + F+W Y L W A + +F I Y
Sbjct: 119 YTGVTVSFLGRRFGDWRFSWSYILGWVAVLMTFFAGIFY 157
>gi|169211272 PREDICTED: germ cell-specific gene 1-like protein
2-like [Homo sapiens]
Length = 293
Score = 35.4 bits (80), Expect = 0.027
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 20/128 (15%)
Query: 50 YYLSLWESCRKPASLDIWHCESTLS--SDWQIATLALLLGGAAIILIAFLVGLISICVGS 107
+++ LW+SC + + + C S S + L L +GG + ++ L +I +GS
Sbjct: 88 FHVGLWQSCEESLNGEDEKCRSFRSVVPAEEQGVLWLSIGGEVLDIVLILTS--AILLGS 145
Query: 108 RRRFYRP----------VAVMLFAAVVLQVCSLVLYPIKFIETVSLKIYH------EFNW 151
R P VA+ + A +L + + ++Y F TV+L ++ W
Sbjct: 146 RVSCRSPGFHWLRVDALVAIFMVLAGLLGMVAHMMYTTIFQITVNLGPEDWKPQTWDYGW 205
Query: 152 GYGLAWGA 159
Y LAWG+
Sbjct: 206 SYCLAWGS 213
>gi|169211660 PREDICTED: germ cell-specific gene 1-like protein
2-like [Homo sapiens]
Length = 293
Score = 35.4 bits (80), Expect = 0.027
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 20/128 (15%)
Query: 50 YYLSLWESCRKPASLDIWHCESTLS--SDWQIATLALLLGGAAIILIAFLVGLISICVGS 107
+++ LW+SC + + + C S S + L L +GG + ++ L +I +GS
Sbjct: 88 FHVGLWQSCEESLNGEDEKCRSFRSVVPAEEQGVLWLSIGGEVLDIVLILTS--AILLGS 145
Query: 108 RRRFYRP----------VAVMLFAAVVLQVCSLVLYPIKFIETVSLKIYH------EFNW 151
R P VA+ + A +L + + ++Y F TV+L ++ W
Sbjct: 146 RVSCRSPGFHWLRVDALVAIFMVLAGLLGMVAHMMYTTIFQITVNLGPEDWKPQTWDYGW 205
Query: 152 GYGLAWGA 159
Y LAWG+
Sbjct: 206 SYCLAWGS 213
>gi|169210878 PREDICTED: germ cell-specific gene 1-like protein
2-like [Homo sapiens]
Length = 293
Score = 35.4 bits (80), Expect = 0.027
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 20/128 (15%)
Query: 50 YYLSLWESCRKPASLDIWHCESTLS--SDWQIATLALLLGGAAIILIAFLVGLISICVGS 107
+++ LW+SC + + + C S S + L L +GG + ++ L +I +GS
Sbjct: 88 FHVGLWQSCEESLNGEDEKCRSFRSVVPAEEQGVLWLSIGGEVLDIVLILTS--AILLGS 145
Query: 108 RRRFYRP----------VAVMLFAAVVLQVCSLVLYPIKFIETVSLKIYH------EFNW 151
R P VA+ + A +L + + ++Y F TV+L ++ W
Sbjct: 146 RVSCRSPGFHWLRVDALVAIFMVLAGLLGMVAHMMYTTIFQITVNLGPEDWKPQTWDYGW 205
Query: 152 GYGLAWGA 159
Y LAWG+
Sbjct: 206 SYCLAWGS 213
>gi|22748765 claudin domain containing 2 [Homo sapiens]
Length = 167
Score = 34.7 bits (78), Expect = 0.046
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 12/148 (8%)
Query: 27 IFLALCLDLGAVLSPA--WVTADHQYYLSLWESCRKPASLDIWHCESTLSSDWQIATLAL 84
I L+L ++ VLS A + T + + LW+ C I C++TL+ T+A
Sbjct: 12 ILLSLVANVLMVLSTATNYWTRQQEGHSGLWQECNHGICSSI-PCQTTLA-----VTVAC 65
Query: 85 LLGGAAIILIAFLVGLISICVGSRRRFYRPVAVMLFAAVVLQVCSLVLYPIKFIETVSLK 144
++ + ++ ++GL C + + LF +L + +L+ Y +K + K
Sbjct: 66 MVLAVGVGVVGMVMGLRIRCDEGESLRGQTTSAFLFLGGLLLLTALIGYTVK----NAWK 121
Query: 145 IYHEFNWGYGLAWGATIFSFGGAILYCL 172
F+W Y W A FS + L
Sbjct: 122 NNVFFSWSYFSGWLALPFSILAGFCFLL 149
>gi|21361300 lens intrinsic membrane protein 2, 19kDa isoform 1
[Homo sapiens]
Length = 215
Score = 32.0 bits (71), Expect = 0.30
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 80 ATLALLLGGAAIILIAFLVGLISIC-VGSRRRFYRPVA--VMLFAAVVLQVCSLVLYPIK 136
AT A ++ A + ++G+++ + R RP + +M F++ + V +L +Y
Sbjct: 105 ATRAFMILSALCAISGIIMGIMAFAHQPTFSRISRPFSAGIMFFSSTLFVVLALAIYTGV 164
Query: 137 FIETVSLKIYH-EFNWGYGLAWGATIFSFGGAILY 170
+ + + F+W Y L W A + +F I Y
Sbjct: 165 TVSFLGRRFGDWRFSWSYILGWVAVLMTFFAGIFY 199
>gi|169171977 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 31.2 bits (69), Expect = 0.51
Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 20/130 (15%)
Query: 41 PAWVTADHQYYLSLWESCRKPASLDIWHCESTLSSDWQIATLALLLGGAAIILIAFLVGL 100
P W + DH L C + C SSD + T + AIIL +++G+
Sbjct: 37 PMWPSEDHGS-AGLQLQCSTTGT----SCWGHESSDLRRMTAGFMGMAVAIILFGWIIGV 91
Query: 101 ISICVGSRRRFYRPVAVMLF----AAVVLQVCSLVL--------YPIKFIETVSLKIYHE 148
+ C R + VA +LF ++ +C+ V YP +++ + I H
Sbjct: 92 LGCCWD--RGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYP-RYLYGLPDDISHG 148
Query: 149 FNWGYGLAWG 158
+ W AWG
Sbjct: 149 YGWSMFCAWG 158
>gi|169171016 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 31.2 bits (69), Expect = 0.51
Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 20/130 (15%)
Query: 41 PAWVTADHQYYLSLWESCRKPASLDIWHCESTLSSDWQIATLALLLGGAAIILIAFLVGL 100
P W + DH L C + C SSD + T + AIIL +++G+
Sbjct: 37 PMWPSEDHGS-AGLQLQCSTTGT----SCWGHESSDLRRMTAGFMGMAVAIILFGWIIGV 91
Query: 101 ISICVGSRRRFYRPVAVMLF----AAVVLQVCSLVL--------YPIKFIETVSLKIYHE 148
+ C R + VA +LF ++ +C+ V YP +++ + I H
Sbjct: 92 LGCCWD--RGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYP-RYLYGLPDDISHG 148
Query: 149 FNWGYGLAWG 158
+ W AWG
Sbjct: 149 YGWSMFCAWG 158
>gi|239509059 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 31.2 bits (69), Expect = 0.51
Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 20/130 (15%)
Query: 41 PAWVTADHQYYLSLWESCRKPASLDIWHCESTLSSDWQIATLALLLGGAAIILIAFLVGL 100
P W + DH L C + C SSD + T + AIIL +++G+
Sbjct: 37 PMWPSEDHGS-AGLQLQCSTTGT----SCWGHESSDLRRMTAGFMGMAVAIILFGWIIGV 91
Query: 101 ISICVGSRRRFYRPVAVMLF----AAVVLQVCSLVL--------YPIKFIETVSLKIYHE 148
+ C R + VA +LF ++ +C+ V YP +++ + I H
Sbjct: 92 LGCCWD--RGLMQYVAGLLFLMGGTFCIISLCTCVAGINFELSRYP-RYLYGLPDDISHG 148
Query: 149 FNWGYGLAWG 158
+ W AWG
Sbjct: 149 YGWSMFCAWG 158
>gi|10863887 claudin 1 [Homo sapiens]
Length = 211
Score = 31.2 bits (69), Expect = 0.51
Identities = 49/194 (25%), Positives = 80/194 (41%), Gaps = 38/194 (19%)
Query: 19 LKLVGLVCIFLALCLDLGAVLS---PAW----------VTADHQYYLSLWESCRKPASLD 65
L+L+G + FL +GA++S P W VTA Y LW SC ++
Sbjct: 6 LQLLGFILAFLGW---IGAIVSTALPQWRIYSYAGDNIVTAQAMYE-GLWMSCVSQSTGQ 61
Query: 66 IWHCES-----TLSSDWQIATLALLLGGAAIILIAFLVGLISI----CVGSRRRFYRPVA 116
I C+ LSS Q AT AL++ G + +IA V + + C+ +A
Sbjct: 62 I-QCKVFDSLLNLSSTLQ-ATRALMVVGILLGVIAIFVATVGMKCMKCLEDDEVQKMRMA 119
Query: 117 VMLFAAVVLQVCSLVLYPIKFIETVSLKIY---------HEFNWGYGLAWGA-TIFSFGG 166
V+ A +L ++++ + + + Y +EF W A ++ GG
Sbjct: 120 VIGGAIFLLAGLAILVATAWYGNRIVQEFYDPMTPVNARYEFGQALFTGWAAASLCLLGG 179
Query: 167 AILYCLNPKNYEDY 180
A+L C P+ Y
Sbjct: 180 ALLCCSCPRKTTSY 193
>gi|124107616 claudin 23 [Homo sapiens]
Length = 292
Score = 31.2 bits (69), Expect = 0.51
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 17/135 (12%)
Query: 17 TPLKL-VGLVCIFLALCLDLGAVLSPAW--------VTADHQYYLSLWESCRKPASLDIW 67
TP+ + +G+V L L+L L+P W D + Y LW+ CR+ +S +
Sbjct: 3 TPVVMTLGMVLAPCGLLLNLTGTLAPGWRLVKGFLNQPVDVELYQGLWDMCREQSSRE-- 60
Query: 68 HCESTLSSDWQIATLALLLGGAAII---LIAFLVGLISICVGSRRRFYRPVAVML-FAAV 123
E + W +L A++ L A ++GL+ +G R P V+ + V
Sbjct: 61 -RECGQTDQWGYFEAQPVLVARALMVTSLAATVLGLLLASLGVRCWQDEPNFVLAGLSGV 119
Query: 124 VLQVCSLV-LYPIKF 137
VL V L+ L P+ +
Sbjct: 120 VLFVAGLLGLIPVSW 134
>gi|7305013 lysophosphatidic acid receptor 2 [Homo sapiens]
Length = 351
Score = 29.3 bits (64), Expect = 1.9
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 73 LSSDWQIATLALLLGGAAIILIAFLVGLISIC-VGSRRRFYRPVAVML 119
LSS W+ + ++ G + ++ L L+ I + S RRF++P+ +L
Sbjct: 24 LSSHWRPKDVVVVALGLTVSVLVLLTNLLVIAAIASNRRFHQPIYYLL 71
>gi|9966781 claudin 2 [Homo sapiens]
Length = 230
Score = 28.9 bits (63), Expect = 2.5
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 19 LKLVGLVCIFLALCLDLGAVLSPAWVTADH---------QYYLSLWESCRKPAS----LD 65
L+LVG + L L L A+L P+W T+ + + LW C ++ D
Sbjct: 6 LQLVGYILGLLGLLGTLVAMLLPSWKTSSYVGASIVTAVGFSKGLWMECATHSTGITQCD 65
Query: 66 IWHCESTLSSDWQIATLALLLGGAAIILIAFLVGLISI 103
I+ L +D Q A A+++ +AI +A ++ ++ +
Sbjct: 66 IYSTLLGLPADIQ-AAQAMMVTSSAISSLACIISVVGM 102
>gi|5031865 lipoma HMGIC fusion partner [Homo sapiens]
Length = 200
Score = 28.1 bits (61), Expect = 4.3
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 56 ESCRKPASLDIWHCESTLSSDWQIATLALLLGGAAIILIAFLVGLISICVGS--RRRFYR 113
E C + AS + S++W+I T+ LG ++L+A L L+ CV R R
Sbjct: 66 EECGRYASF-----QGIPSAEWRICTIVTGLGCGLLLLVA-LTALMGCCVSDLISRTVGR 119
Query: 114 PVAVMLFAAVVLQVCSLVLYPI 135
+ F +L LYP+
Sbjct: 120 VAGGIQFLGGLLIGAGCALYPL 141
>gi|189011544 ubiquitously transcribed tetratricopeptide repeat, X
chromosome [Homo sapiens]
Length = 1401
Score = 27.7 bits (60), Expect = 5.6
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 30 ALCLDLGAVLSPAWVTADHQYYLSLWESCRKPASLD--------IWHCESTLS 74
AL LDLG + V A++++ + + +PA + IWHCES S
Sbjct: 976 ALKLDLGLFSTKTLVEANNEHMVEVRTQLLQPADENWDPTGTKKIWHCESNRS 1028
>gi|18921093 transient receptor potential cation channel, subfamily
M, member 6 [Homo sapiens]
Length = 2022
Score = 26.9 bits (58), Expect = 9.6
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 139 ETVSLKIYHEFNWGYGLAWGATIFSFGGAILYCLN 173
ETV++ + F+ G+ L WG F G ++YC++
Sbjct: 914 ETVAIGL---FSAGFVLRWGDPPFHTAGRLIYCID 945
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.328 0.141 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,579,002
Number of Sequences: 37866
Number of extensions: 249612
Number of successful extensions: 758
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 748
Number of HSP's gapped (non-prelim): 24
length of query: 181
length of database: 18,247,518
effective HSP length: 96
effective length of query: 85
effective length of database: 14,612,382
effective search space: 1242052470
effective search space used: 1242052470
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.