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Search of human proteins with 13775178
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13775178 testis expressed 13B [Homo sapiens]
(312 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13775178 testis expressed 13B [Homo sapiens] 634 0.0
gi|13775180 testis expressed sequence 13A [Homo sapiens] 283 2e-76
gi|169217230 PREDICTED: similar to hCG2044193 [Homo sapiens] 109 4e-24
gi|169216426 PREDICTED: similar to hCG2044193 [Homo sapiens] 109 4e-24
gi|169216870 PREDICTED: hypothetical protein LOC100129520 [Homo ... 109 4e-24
gi|239757898 PREDICTED: similar to testis expressed sequence 13A... 105 5e-23
gi|239752412 PREDICTED: similar to testis expressed sequence 13A... 105 5e-23
gi|169216868 PREDICTED: similar to testis expressed sequence 13A... 105 5e-23
gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo ... 39 0.008
gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo ... 39 0.008
gi|4505531 oxysterol binding protein [Homo sapiens] 36 0.038
gi|48375167 microtubule-associated protein 6 isoform 2 [Homo sap... 33 0.25
gi|48375173 microtubule-associated protein 6 isoform 1 [Homo sap... 33 0.25
gi|27436925 synoviolin 1 isoform a [Homo sapiens] 32 0.55
gi|27436927 synoviolin 1 isoform b [Homo sapiens] 32 0.72
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 32 0.72
gi|60218906 golgi autoantigen, golgin subfamily a, 8F [Homo sapi... 32 0.95
gi|41322923 plectin 1 isoform 11 [Homo sapiens] 32 0.95
gi|41322914 plectin 1 isoform 10 [Homo sapiens] 32 0.95
gi|41322919 plectin 1 isoform 8 [Homo sapiens] 32 0.95
gi|41322910 plectin 1 isoform 7 [Homo sapiens] 32 0.95
gi|41322916 plectin 1 isoform 6 [Homo sapiens] 32 0.95
gi|41322908 plectin 1 isoform 3 [Homo sapiens] 32 0.95
gi|41322912 plectin 1 isoform 2 [Homo sapiens] 32 0.95
gi|47607492 plectin 1 isoform 1 [Homo sapiens] 32 0.95
gi|224493919 zinc finger and SCAN domain containing 18 isoform 2... 31 1.2
gi|224493912 zinc finger and SCAN domain containing 18 isoform 3... 31 1.2
gi|226371704 zinc finger and SCAN domain containing 18 isoform 3... 31 1.2
gi|239756562 PREDICTED: hypothetical protein [Homo sapiens] 31 1.2
gi|239508698 PREDICTED: similar to mucin [Homo sapiens] 31 1.2
>gi|13775178 testis expressed 13B [Homo sapiens]
Length = 312
Score = 634 bits (1636), Expect = 0.0
Identities = 312/312 (100%), Positives = 312/312 (100%)
Query: 1 MALRPEDPSSGFRHGNVVAFIIEKMARHTKGPEFYFENISLSWEEVEDKLRAILEDSEVP 60
MALRPEDPSSGFRHGNVVAFIIEKMARHTKGPEFYFENISLSWEEVEDKLRAILEDSEVP
Sbjct: 1 MALRPEDPSSGFRHGNVVAFIIEKMARHTKGPEFYFENISLSWEEVEDKLRAILEDSEVP 60
Query: 61 SEVKEACTWGSLALGVRFAHRQGQLQNRRVQWLQGFAKLHRSAALVLASNLTELKEQQEM 120
SEVKEACTWGSLALGVRFAHRQGQLQNRRVQWLQGFAKLHRSAALVLASNLTELKEQQEM
Sbjct: 61 SEVKEACTWGSLALGVRFAHRQGQLQNRRVQWLQGFAKLHRSAALVLASNLTELKEQQEM 120
Query: 121 ECNEATFQLQLTETSLAEVQRERDMLRWKLFHAELAPPQGQGQATVFPGLATAGGDWTEG 180
ECNEATFQLQLTETSLAEVQRERDMLRWKLFHAELAPPQGQGQATVFPGLATAGGDWTEG
Sbjct: 121 ECNEATFQLQLTETSLAEVQRERDMLRWKLFHAELAPPQGQGQATVFPGLATAGGDWTEG 180
Query: 181 AGEQEKEAVAAAGAAGGKGEERYAEAGPAPAEVLQGLGGGFRQPLGAIVAGKLHLCGAEG 240
AGEQEKEAVAAAGAAGGKGEERYAEAGPAPAEVLQGLGGGFRQPLGAIVAGKLHLCGAEG
Sbjct: 181 AGEQEKEAVAAAGAAGGKGEERYAEAGPAPAEVLQGLGGGFRQPLGAIVAGKLHLCGAEG 240
Query: 241 ERSQVSTNSHVCLLWAWVHSLTGASSCPAPYLIHILIPMPFVRLLSHTQYTPFTSKGHRT 300
ERSQVSTNSHVCLLWAWVHSLTGASSCPAPYLIHILIPMPFVRLLSHTQYTPFTSKGHRT
Sbjct: 241 ERSQVSTNSHVCLLWAWVHSLTGASSCPAPYLIHILIPMPFVRLLSHTQYTPFTSKGHRT 300
Query: 301 GSNSDAFQLGGL 312
GSNSDAFQLGGL
Sbjct: 301 GSNSDAFQLGGL 312
>gi|13775180 testis expressed sequence 13A [Homo sapiens]
Length = 409
Score = 283 bits (723), Expect = 2e-76
Identities = 153/218 (70%), Positives = 169/218 (77%), Gaps = 12/218 (5%)
Query: 1 MALRPEDPSSGFRHGNVVAFIIEKMARHTKGPEFYFENISLSWEEVEDKLRAILEDSEVP 60
MALRPEDPSSGFRH NVVAFI EKMARHTKGPEFY ENISLSWE+VEDKLRAILEDSEVP
Sbjct: 1 MALRPEDPSSGFRHSNVVAFINEKMARHTKGPEFYLENISLSWEKVEDKLRAILEDSEVP 60
Query: 61 SEVKEACTWGSLALGVRFAHRQGQLQNRRVQWLQGFAKLHRSAALVLASNLTELKEQQEM 120
SEVKEACTWGSLALGVRFAHRQ QLQ RV+WL GFAKLH+SAA LAS+L +L+EQQE
Sbjct: 61 SEVKEACTWGSLALGVRFAHRQAQLQRHRVRWLHGFAKLHKSAAQALASDLKKLREQQET 120
Query: 121 ECNEATFQLQLTETSLAEVQRERDMLRWKLFHAELAPPQGQGQATVFPGLATAGGDWTEG 180
E EA +L++ +TSL EVQ+ERD EL P Q +PGLATAGG TEG
Sbjct: 121 ERKEAASRLRMAQTSLVEVQKERD--------KELVSPHEWEQGAGWPGLATAGGVCTEG 172
Query: 181 AGEQEKE-AVAAAGAAGGKG---EERYAEAGPAPAEVL 214
A E+E+E AVAAAGAAGGKG E+R E AP E +
Sbjct: 173 AAEEEEEAAVAAAGAAGGKGAEEEQRDVEVVAAPVEAM 210
>gi|169217230 PREDICTED: similar to hCG2044193 [Homo sapiens]
Length = 890
Score = 109 bits (272), Expect = 4e-24
Identities = 63/154 (40%), Positives = 88/154 (57%), Gaps = 4/154 (2%)
Query: 1 MALRPEDPSSGFRHGNVVAFIIEKMARHTKGPEFYFENISLSWEEVEDKLRAILEDSEVP 60
MA+ D +SGFRH +V+ FI ++ R+ P FY S W EVED+LRAI+ D VP
Sbjct: 1 MAMNFGDHASGFRHDDVIRFINNEVLRNGGSPAFYTAFRSRPWNEVEDRLRAIVADPRVP 60
Query: 61 SEVKEACTWGSLALGVRFAHRQGQLQNRRVQWLQGFAKLHRSAALVLASNLTELKEQQEM 120
+K ACTW +LAL V+ A RQ + +V WLQG + ++ + L S L +L+ +
Sbjct: 61 RAIKRACTWSALALSVQVAARQQEELLYQVWWLQGHVEECQATSWALTSQLQQLR----L 116
Query: 121 ECNEATFQLQLTETSLAEVQRERDMLRWKLFHAE 154
E E QL LT+ +L +V ERD L +L E
Sbjct: 117 EHEEVATQLHLTQAALQQVLNERDGLCGRLLEVE 150
>gi|169216426 PREDICTED: similar to hCG2044193 [Homo sapiens]
Length = 993
Score = 109 bits (272), Expect = 4e-24
Identities = 63/154 (40%), Positives = 88/154 (57%), Gaps = 4/154 (2%)
Query: 1 MALRPEDPSSGFRHGNVVAFIIEKMARHTKGPEFYFENISLSWEEVEDKLRAILEDSEVP 60
MA+ D +SGFRH +V+ FI ++ R+ P FY S W EVED+LRAI+ D VP
Sbjct: 1 MAMNFGDHASGFRHDDVIRFINNEVLRNGGSPAFYTAFRSRPWNEVEDRLRAIVADPRVP 60
Query: 61 SEVKEACTWGSLALGVRFAHRQGQLQNRRVQWLQGFAKLHRSAALVLASNLTELKEQQEM 120
+K ACTW +LAL V+ A RQ + +V WLQG + ++ + L S L +L+ +
Sbjct: 61 RAIKRACTWSALALSVQVAARQQEELLYQVWWLQGHVEECQATSWALTSQLQQLR----L 116
Query: 121 ECNEATFQLQLTETSLAEVQRERDMLRWKLFHAE 154
E E QL LT+ +L +V ERD L +L E
Sbjct: 117 EHEEVATQLHLTQAALQQVLNERDGLCGRLLEVE 150
>gi|169216870 PREDICTED: hypothetical protein LOC100129520 [Homo
sapiens]
Length = 993
Score = 109 bits (272), Expect = 4e-24
Identities = 63/154 (40%), Positives = 88/154 (57%), Gaps = 4/154 (2%)
Query: 1 MALRPEDPSSGFRHGNVVAFIIEKMARHTKGPEFYFENISLSWEEVEDKLRAILEDSEVP 60
MA+ D +SGFRH +V+ FI ++ R+ P FY S W EVED+LRAI+ D VP
Sbjct: 1 MAMNFGDHASGFRHDDVIRFINNEVLRNGGSPAFYTAFRSRPWNEVEDRLRAIVADPRVP 60
Query: 61 SEVKEACTWGSLALGVRFAHRQGQLQNRRVQWLQGFAKLHRSAALVLASNLTELKEQQEM 120
+K ACTW +LAL V+ A RQ + +V WLQG + ++ + L S L +L+ +
Sbjct: 61 RAIKRACTWSALALSVQVAARQQEELLYQVWWLQGHVEECQATSWALTSQLQQLR----L 116
Query: 121 ECNEATFQLQLTETSLAEVQRERDMLRWKLFHAE 154
E E QL LT+ +L +V ERD L +L E
Sbjct: 117 EHEEVATQLHLTQAALQQVLNERDGLCGRLLEVE 150
>gi|239757898 PREDICTED: similar to testis expressed sequence 13A
[Homo sapiens]
Length = 652
Score = 105 bits (262), Expect = 5e-23
Identities = 62/157 (39%), Positives = 87/157 (55%), Gaps = 4/157 (2%)
Query: 1 MALRPEDPSSGFRHGNVVAFIIEKMARHTKGPEFYFENISLSWEEVEDKLRAILEDSEVP 60
MA+ D +SGFRH +V+ FI ++ GP FY S W EVED L+AI+ DS+VP
Sbjct: 1 MAMNFGDHASGFRHNDVIRFINNEVLMDGSGPAFYVAFRSRPWNEVEDSLQAIVADSQVP 60
Query: 61 SEVKEACTWGSLALGVRFAHRQGQLQNRRVQWLQGFAKLHRSAALVLASNLTELKEQQEM 120
+K ACTW +LAL VR A RQ + V+ LQ A+ ++ + L S L +L+ + E+
Sbjct: 61 RAIKRACTWSALALSVRVATRQREELLHHVRRLQRHAEERQATSWALTSQLQQLRLEHEV 120
Query: 121 ECNEATFQLQLTETSLAEVQRERDMLRWKLFHAELAP 157
A QL L + +L + ERD L +L E P
Sbjct: 121 ----AATQLHLAQAALQQALNERDGLYGRLLQIERFP 153
>gi|239752412 PREDICTED: similar to testis expressed sequence 13A
[Homo sapiens]
Length = 652
Score = 105 bits (262), Expect = 5e-23
Identities = 62/157 (39%), Positives = 87/157 (55%), Gaps = 4/157 (2%)
Query: 1 MALRPEDPSSGFRHGNVVAFIIEKMARHTKGPEFYFENISLSWEEVEDKLRAILEDSEVP 60
MA+ D +SGFRH +V+ FI ++ GP FY S W EVED L+AI+ DS+VP
Sbjct: 1 MAMNFGDHASGFRHNDVIRFINNEVLMDGSGPAFYVAFRSRPWNEVEDSLQAIVADSQVP 60
Query: 61 SEVKEACTWGSLALGVRFAHRQGQLQNRRVQWLQGFAKLHRSAALVLASNLTELKEQQEM 120
+K ACTW +LAL VR A RQ + V+ LQ A+ ++ + L S L +L+ + E+
Sbjct: 61 RAIKRACTWSALALSVRVATRQREELLHHVRRLQRHAEERQATSWALTSQLQQLRLEHEV 120
Query: 121 ECNEATFQLQLTETSLAEVQRERDMLRWKLFHAELAP 157
A QL L + +L + ERD L +L E P
Sbjct: 121 ----AATQLHLAQAALQQALNERDGLYGRLLQIERFP 153
>gi|169216868 PREDICTED: similar to testis expressed sequence 13A
[Homo sapiens]
Length = 714
Score = 105 bits (262), Expect = 5e-23
Identities = 62/157 (39%), Positives = 87/157 (55%), Gaps = 4/157 (2%)
Query: 1 MALRPEDPSSGFRHGNVVAFIIEKMARHTKGPEFYFENISLSWEEVEDKLRAILEDSEVP 60
MA+ D +SGFRH +V+ FI ++ GP FY S W EVED L+AI+ DS+VP
Sbjct: 1 MAMNFGDHASGFRHNDVIRFINNEVLMDGSGPAFYVAFRSRPWNEVEDSLQAIVADSQVP 60
Query: 61 SEVKEACTWGSLALGVRFAHRQGQLQNRRVQWLQGFAKLHRSAALVLASNLTELKEQQEM 120
+K ACTW +LAL VR A RQ + V+ LQ A+ ++ + L S L +L+ + E+
Sbjct: 61 RAIKRACTWSALALSVRVATRQREELLHHVRRLQRHAEERQATSWALTSQLQQLRLEHEV 120
Query: 121 ECNEATFQLQLTETSLAEVQRERDMLRWKLFHAELAP 157
A QL L + +L + ERD L +L E P
Sbjct: 121 ----AATQLHLAQAALQQALNERDGLYGRLLQIERFP 153
>gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo
sapiens]
Length = 5033
Score = 38.5 bits (88), Expect = 0.008
Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 158 PQGQGQATVFPGLATAGGDWTEGAGEQEKEAVAAAGAAGGKGEERYAEAGPAPAEVLQGL 217
P G G G + GD EGAG++E EAV AG G G + GP E GL
Sbjct: 4391 PAGPGGDADGEGASEGAGDAAEGAGDEE-EAVHEAGPGGADGAVAVTDGGPFRPEGAGGL 4449
Query: 218 G 218
G
Sbjct: 4450 G 4450
>gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo
sapiens]
Length = 5038
Score = 38.5 bits (88), Expect = 0.008
Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 158 PQGQGQATVFPGLATAGGDWTEGAGEQEKEAVAAAGAAGGKGEERYAEAGPAPAEVLQGL 217
P G G G + GD EGAG++E EAV AG G G + GP E GL
Sbjct: 4396 PAGPGGDADGEGASEGAGDAAEGAGDEE-EAVHEAGPGGADGAVAVTDGGPFRPEGAGGL 4454
Query: 218 G 218
G
Sbjct: 4455 G 4455
>gi|4505531 oxysterol binding protein [Homo sapiens]
Length = 807
Score = 36.2 bits (82), Expect = 0.038
Identities = 25/67 (37%), Positives = 27/67 (40%)
Query: 153 AELAPPQGQGQATVFPGLATAGGDWTEGAGEQEKEAVAAAGAAGGKGEERYAEAGPAPAE 212
A +A G G G GD G+G VAAA G G A AGPAPA
Sbjct: 15 AAIAALGGGGAGPPVVGGGGGRGDAGPGSGAASGTVVAAAAGGPGPGAGGVAAAGPAPAP 74
Query: 213 VLQGLGG 219
G GG
Sbjct: 75 PTGGSGG 81
>gi|48375167 microtubule-associated protein 6 isoform 2 [Homo
sapiens]
Length = 439
Score = 33.5 bits (75), Expect = 0.25
Identities = 27/65 (41%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 157 PPQGQGQATVFPGLATAGGDWTEGAGEQEKEAVA-AAGAAGGKGEERYAEAGPAPAEVLQ 215
PPQ Q Q + P A A T+ A + E +AVA A G A G ER AGP +
Sbjct: 48 PPQQQAQPALAPPSARAVAIETQPA-QGELDAVARATGPAPGPTGEREPAAGPGRSGPGP 106
Query: 216 GLGGG 220
GLG G
Sbjct: 107 GLGSG 111
>gi|48375173 microtubule-associated protein 6 isoform 1 [Homo
sapiens]
Length = 813
Score = 33.5 bits (75), Expect = 0.25
Identities = 27/65 (41%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 157 PPQGQGQATVFPGLATAGGDWTEGAGEQEKEAVA-AAGAAGGKGEERYAEAGPAPAEVLQ 215
PPQ Q Q + P A A T+ A + E +AVA A G A G ER AGP +
Sbjct: 48 PPQQQAQPALAPPSARAVAIETQPA-QGELDAVARATGPAPGPTGEREPAAGPGRSGPGP 106
Query: 216 GLGGG 220
GLG G
Sbjct: 107 GLGSG 111
>gi|27436925 synoviolin 1 isoform a [Homo sapiens]
Length = 616
Score = 32.3 bits (72), Expect = 0.55
Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Query: 157 PPQGQGQATVFPGLATA-----GGDWTEGAGEQEKEAVAAAGAAGGKGEERYAEAGPAP 210
PP G+A P + A G T AG A AA+ A G G EAGPAP
Sbjct: 396 PPPSSGEAVAPPSTSAALSRPSGAATTTAAGTS---ATAASATASGPGSGSAPEAGPAP 451
>gi|27436927 synoviolin 1 isoform b [Homo sapiens]
Length = 617
Score = 32.0 bits (71), Expect = 0.72
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 157 PPQGQGQATVFPGLATAGGDWTEGAGEQEK---EAVAAAGAAGGKGEERYAEAGPAP 210
PP G+A P + A GA A AA+ A G G EAGPAP
Sbjct: 396 PPPSSGEAVAPPSTSAAALSRPSGAATTTAAGTSATAASATASGPGSGSAPEAGPAP 452
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 32.0 bits (71), Expect = 0.72
Identities = 26/82 (31%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
Query: 153 AELAPPQGQGQATVFPGLATAGGDWTEGAGEQEKEAVAAAGAAGGKGEERYAEAGPAP-- 210
A+ G+ PG A G+ E E+E E AA GAA G A A P P
Sbjct: 1285 ADAGAAGGEAGGAGAPGPAEEDGE-DEDEDEEEDEEAAAPGAAAGPRGPGRARAAPVPVV 1343
Query: 211 -----AEVLQGLGGGFRQPLGA 227
A+ + L G + P GA
Sbjct: 1344 VSSADADAARPLRGLLKSPRGA 1365
>gi|60218906 golgi autoantigen, golgin subfamily a, 8F [Homo
sapiens]
Length = 283
Score = 31.6 bits (70), Expect = 0.95
Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 9/100 (9%)
Query: 117 QQEMECNEATFQLQLTETSLAEVQRERDMLRWKLFHAELAPPQGQGQATVFPGLATAGGD 176
++E+E Q Q+ + L Q R+ K++H P A G AG
Sbjct: 107 RKELERVAGELQAQVEKEELGFFQYYRERCHQKVYHPITKPGGSAKDAAPGGGHHQAG-- 164
Query: 177 WTEGAGEQEKEAVAAAG---AAGG--KGEERYAEAGPAPA 211
G G E EA AAG AAGG KG ++ PA
Sbjct: 165 --PGQGGDEGEAAGAAGDGVAAGGDYKGHSKFLVTAQNPA 202
>gi|41322923 plectin 1 isoform 11 [Homo sapiens]
Length = 4547
Score = 31.6 bits (70), Expect = 0.95
Identities = 39/166 (23%), Positives = 66/166 (39%), Gaps = 22/166 (13%)
Query: 37 ENISLSWEEVEDKLRAILEDSEVPSEVKEACTWGSLALGVRFAHRQGQLQNRRVQWLQGF 96
E + L EE E +LR +EV+ A +AL + +LQ++R + +
Sbjct: 1539 EELRLQAEEAERRLRQ--------AEVERA-RQVQVALETAQRSAEAELQSKRASFAEKT 1589
Query: 97 AKLHRSAALVLASNLTELKEQQEMECNEATFQLQLTETSLAEVQRERDMLRWKLFHAELA 156
A+L RS + + +L+E+ E Q E A + ER++ RW+L E
Sbjct: 1590 AQLERSLQEEHVA-VAQLREEAERRAQ------QQAEAERAREEAERELERWQLKANEAL 1642
Query: 157 PPQGQGQATVFPGLATAGGDWTEGAGEQEKEAVAAAGAAGGKGEER 202
+ Q + + E++KE GK EE+
Sbjct: 1643 RLRLQAEE------VAQQKSLAQAEAEKQKEEAEREARRRGKAEEQ 1682
>gi|41322914 plectin 1 isoform 10 [Homo sapiens]
Length = 4551
Score = 31.6 bits (70), Expect = 0.95
Identities = 39/166 (23%), Positives = 66/166 (39%), Gaps = 22/166 (13%)
Query: 37 ENISLSWEEVEDKLRAILEDSEVPSEVKEACTWGSLALGVRFAHRQGQLQNRRVQWLQGF 96
E + L EE E +LR +EV+ A +AL + +LQ++R + +
Sbjct: 1543 EELRLQAEEAERRLRQ--------AEVERA-RQVQVALETAQRSAEAELQSKRASFAEKT 1593
Query: 97 AKLHRSAALVLASNLTELKEQQEMECNEATFQLQLTETSLAEVQRERDMLRWKLFHAELA 156
A+L RS + + +L+E+ E Q E A + ER++ RW+L E
Sbjct: 1594 AQLERSLQEEHVA-VAQLREEAERRAQ------QQAEAERAREEAERELERWQLKANEAL 1646
Query: 157 PPQGQGQATVFPGLATAGGDWTEGAGEQEKEAVAAAGAAGGKGEER 202
+ Q + + E++KE GK EE+
Sbjct: 1647 RLRLQAEE------VAQQKSLAQAEAEKQKEEAEREARRRGKAEEQ 1686
>gi|41322919 plectin 1 isoform 8 [Homo sapiens]
Length = 4547
Score = 31.6 bits (70), Expect = 0.95
Identities = 39/166 (23%), Positives = 66/166 (39%), Gaps = 22/166 (13%)
Query: 37 ENISLSWEEVEDKLRAILEDSEVPSEVKEACTWGSLALGVRFAHRQGQLQNRRVQWLQGF 96
E + L EE E +LR +EV+ A +AL + +LQ++R + +
Sbjct: 1539 EELRLQAEEAERRLRQ--------AEVERA-RQVQVALETAQRSAEAELQSKRASFAEKT 1589
Query: 97 AKLHRSAALVLASNLTELKEQQEMECNEATFQLQLTETSLAEVQRERDMLRWKLFHAELA 156
A+L RS + + +L+E+ E Q E A + ER++ RW+L E
Sbjct: 1590 AQLERSLQEEHVA-VAQLREEAERRAQ------QQAEAERAREEAERELERWQLKANEAL 1642
Query: 157 PPQGQGQATVFPGLATAGGDWTEGAGEQEKEAVAAAGAAGGKGEER 202
+ Q + + E++KE GK EE+
Sbjct: 1643 RLRLQAEE------VAQQKSLAQAEAEKQKEEAEREARRRGKAEEQ 1682
>gi|41322910 plectin 1 isoform 7 [Homo sapiens]
Length = 4515
Score = 31.6 bits (70), Expect = 0.95
Identities = 39/166 (23%), Positives = 66/166 (39%), Gaps = 22/166 (13%)
Query: 37 ENISLSWEEVEDKLRAILEDSEVPSEVKEACTWGSLALGVRFAHRQGQLQNRRVQWLQGF 96
E + L EE E +LR +EV+ A +AL + +LQ++R + +
Sbjct: 1507 EELRLQAEEAERRLRQ--------AEVERA-RQVQVALETAQRSAEAELQSKRASFAEKT 1557
Query: 97 AKLHRSAALVLASNLTELKEQQEMECNEATFQLQLTETSLAEVQRERDMLRWKLFHAELA 156
A+L RS + + +L+E+ E Q E A + ER++ RW+L E
Sbjct: 1558 AQLERSLQEEHVA-VAQLREEAERRAQ------QQAEAERAREEAERELERWQLKANEAL 1610
Query: 157 PPQGQGQATVFPGLATAGGDWTEGAGEQEKEAVAAAGAAGGKGEER 202
+ Q + + E++KE GK EE+
Sbjct: 1611 RLRLQAEE------VAQQKSLAQAEAEKQKEEAEREARRRGKAEEQ 1650
>gi|41322916 plectin 1 isoform 6 [Homo sapiens]
Length = 4684
Score = 31.6 bits (70), Expect = 0.95
Identities = 39/166 (23%), Positives = 66/166 (39%), Gaps = 22/166 (13%)
Query: 37 ENISLSWEEVEDKLRAILEDSEVPSEVKEACTWGSLALGVRFAHRQGQLQNRRVQWLQGF 96
E + L EE E +LR +EV+ A +AL + +LQ++R + +
Sbjct: 1676 EELRLQAEEAERRLRQ--------AEVERA-RQVQVALETAQRSAEAELQSKRASFAEKT 1726
Query: 97 AKLHRSAALVLASNLTELKEQQEMECNEATFQLQLTETSLAEVQRERDMLRWKLFHAELA 156
A+L RS + + +L+E+ E Q E A + ER++ RW+L E
Sbjct: 1727 AQLERSLQEEHVA-VAQLREEAERRAQ------QQAEAERAREEAERELERWQLKANEAL 1779
Query: 157 PPQGQGQATVFPGLATAGGDWTEGAGEQEKEAVAAAGAAGGKGEER 202
+ Q + + E++KE GK EE+
Sbjct: 1780 RLRLQAEE------VAQQKSLAQAEAEKQKEEAEREARRRGKAEEQ 1819
>gi|41322908 plectin 1 isoform 3 [Homo sapiens]
Length = 4525
Score = 31.6 bits (70), Expect = 0.95
Identities = 39/166 (23%), Positives = 66/166 (39%), Gaps = 22/166 (13%)
Query: 37 ENISLSWEEVEDKLRAILEDSEVPSEVKEACTWGSLALGVRFAHRQGQLQNRRVQWLQGF 96
E + L EE E +LR +EV+ A +AL + +LQ++R + +
Sbjct: 1517 EELRLQAEEAERRLRQ--------AEVERA-RQVQVALETAQRSAEAELQSKRASFAEKT 1567
Query: 97 AKLHRSAALVLASNLTELKEQQEMECNEATFQLQLTETSLAEVQRERDMLRWKLFHAELA 156
A+L RS + + +L+E+ E Q E A + ER++ RW+L E
Sbjct: 1568 AQLERSLQEEHVA-VAQLREEAERRAQ------QQAEAERAREEAERELERWQLKANEAL 1620
Query: 157 PPQGQGQATVFPGLATAGGDWTEGAGEQEKEAVAAAGAAGGKGEER 202
+ Q + + E++KE GK EE+
Sbjct: 1621 RLRLQAEE------VAQQKSLAQAEAEKQKEEAEREARRRGKAEEQ 1660
>gi|41322912 plectin 1 isoform 2 [Homo sapiens]
Length = 4533
Score = 31.6 bits (70), Expect = 0.95
Identities = 39/166 (23%), Positives = 66/166 (39%), Gaps = 22/166 (13%)
Query: 37 ENISLSWEEVEDKLRAILEDSEVPSEVKEACTWGSLALGVRFAHRQGQLQNRRVQWLQGF 96
E + L EE E +LR +EV+ A +AL + +LQ++R + +
Sbjct: 1525 EELRLQAEEAERRLRQ--------AEVERA-RQVQVALETAQRSAEAELQSKRASFAEKT 1575
Query: 97 AKLHRSAALVLASNLTELKEQQEMECNEATFQLQLTETSLAEVQRERDMLRWKLFHAELA 156
A+L RS + + +L+E+ E Q E A + ER++ RW+L E
Sbjct: 1576 AQLERSLQEEHVA-VAQLREEAERRAQ------QQAEAERAREEAERELERWQLKANEAL 1628
Query: 157 PPQGQGQATVFPGLATAGGDWTEGAGEQEKEAVAAAGAAGGKGEER 202
+ Q + + E++KE GK EE+
Sbjct: 1629 RLRLQAEE------VAQQKSLAQAEAEKQKEEAEREARRRGKAEEQ 1668
>gi|47607492 plectin 1 isoform 1 [Homo sapiens]
Length = 4574
Score = 31.6 bits (70), Expect = 0.95
Identities = 39/166 (23%), Positives = 66/166 (39%), Gaps = 22/166 (13%)
Query: 37 ENISLSWEEVEDKLRAILEDSEVPSEVKEACTWGSLALGVRFAHRQGQLQNRRVQWLQGF 96
E + L EE E +LR +EV+ A +AL + +LQ++R + +
Sbjct: 1566 EELRLQAEEAERRLRQ--------AEVERA-RQVQVALETAQRSAEAELQSKRASFAEKT 1616
Query: 97 AKLHRSAALVLASNLTELKEQQEMECNEATFQLQLTETSLAEVQRERDMLRWKLFHAELA 156
A+L RS + + +L+E+ E Q E A + ER++ RW+L E
Sbjct: 1617 AQLERSLQEEHVA-VAQLREEAERRAQ------QQAEAERAREEAERELERWQLKANEAL 1669
Query: 157 PPQGQGQATVFPGLATAGGDWTEGAGEQEKEAVAAAGAAGGKGEER 202
+ Q + + E++KE GK EE+
Sbjct: 1670 RLRLQAEE------VAQQKSLAQAEAEKQKEEAEREARRRGKAEEQ 1709
>gi|224493919 zinc finger and SCAN domain containing 18 isoform 2
[Homo sapiens]
Length = 374
Score = 31.2 bits (69), Expect = 1.2
Identities = 34/96 (35%), Positives = 38/96 (39%), Gaps = 9/96 (9%)
Query: 121 ECNEATFQLQ-LTETSLAEVQRERDMLR--WKLFHAELAPPQGQGQATVFPGLATAGGDW 177
EC EA L L E + R+R + WK FH LA + Q A G
Sbjct: 281 ECGEAFAWLSHLMEHHSSHGGRKRYACQGCWKTFHFSLALAEHQKTHEKEKSYALGGA-- 338
Query: 178 TEGAGEQEKEAVAAAGA-AGGKGEERYAEAGPAPAE 212
G Q A AGA AGG E EA PAP E
Sbjct: 339 ---RGPQPSTREAQAGARAGGPPESVEGEAPPAPPE 371
>gi|224493912 zinc finger and SCAN domain containing 18 isoform 3
[Homo sapiens]
Length = 510
Score = 31.2 bits (69), Expect = 1.2
Identities = 34/96 (35%), Positives = 38/96 (39%), Gaps = 9/96 (9%)
Query: 121 ECNEATFQLQ-LTETSLAEVQRERDMLR--WKLFHAELAPPQGQGQATVFPGLATAGGDW 177
EC EA L L E + R+R + WK FH LA + Q A G
Sbjct: 417 ECGEAFAWLSHLMEHHSSHGGRKRYACQGCWKTFHFSLALAEHQKTHEKEKSYALGGA-- 474
Query: 178 TEGAGEQEKEAVAAAGA-AGGKGEERYAEAGPAPAE 212
G Q A AGA AGG E EA PAP E
Sbjct: 475 ---RGPQPSTREAQAGARAGGPPESVEGEAPPAPPE 507
>gi|226371704 zinc finger and SCAN domain containing 18 isoform 3
[Homo sapiens]
Length = 510
Score = 31.2 bits (69), Expect = 1.2
Identities = 34/96 (35%), Positives = 38/96 (39%), Gaps = 9/96 (9%)
Query: 121 ECNEATFQLQ-LTETSLAEVQRERDMLR--WKLFHAELAPPQGQGQATVFPGLATAGGDW 177
EC EA L L E + R+R + WK FH LA + Q A G
Sbjct: 417 ECGEAFAWLSHLMEHHSSHGGRKRYACQGCWKTFHFSLALAEHQKTHEKEKSYALGGA-- 474
Query: 178 TEGAGEQEKEAVAAAGA-AGGKGEERYAEAGPAPAE 212
G Q A AGA AGG E EA PAP E
Sbjct: 475 ---RGPQPSTREAQAGARAGGPPESVEGEAPPAPPE 507
>gi|239756562 PREDICTED: hypothetical protein [Homo sapiens]
Length = 235
Score = 31.2 bits (69), Expect = 1.2
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 171 ATAGGDWTEGAGEQE----KEAVAAAGAAGGKGEERYAEAGPAPAEVLQGLGGGFRQPLG 226
A A G G G +E K A A A + GGK ++ G A + GGG +P
Sbjct: 143 AAASGAKRRGVGGKEPRRQKPAAAGAKSRGGKSHKKPRRRGQKAAPA-KNSGGGGNKPQK 201
Query: 227 AIVAGKLHLCGAEGER 242
A AG + G G++
Sbjct: 202 AAAAGAKNRGGGGGKK 217
>gi|239508698 PREDICTED: similar to mucin [Homo sapiens]
Length = 265
Score = 31.2 bits (69), Expect = 1.2
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 157 PPQGQGQATVFPGLATAGGDWTEGAGEQEKEAVAAAGAAGGKGEERYAEAGPAPAEVLQG 216
P G GQ G ++ +GA ++E+EA AA A + ++R EA APA G
Sbjct: 43 PAGGTGQRR---GSGSSPSADQQGAQDREEEAAAAPAADQQRAQDREEEAAAAPAPTSSG 99
Query: 217 LGGGFRQP 224
R+P
Sbjct: 100 HRTEKRKP 107
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,027,290
Number of Sequences: 37866
Number of extensions: 623254
Number of successful extensions: 2736
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 2624
Number of HSP's gapped (non-prelim): 190
length of query: 312
length of database: 18,247,518
effective HSP length: 102
effective length of query: 210
effective length of database: 14,385,186
effective search space: 3020889060
effective search space used: 3020889060
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.