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Search of human proteins with 13569960
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13569960 interferon stimulated exonuclease gene 20kDa-like 2
[Homo sapiens]
(353 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13569960 interferon stimulated exonuclease gene 20kDa-like 2 ... 721 0.0
gi|194239666 interferon stimulated exonuclease gene 20kDa-like 1... 228 5e-60
gi|6857800 interferon stimulated exonuclease [Homo sapiens] 152 6e-37
gi|76781492 XPMC2 prevents mitotic catastrophe 2 homolog [Homo s... 138 7e-33
gi|222136615 exonuclease NEF-sp isoform 2 [Homo sapiens] 69 6e-12
gi|222136613 exonuclease NEF-sp isoform 1 [Homo sapiens] 69 6e-12
gi|145199237 transcription elongation factor B polypeptide 3 bin... 68 1e-11
gi|239743602 PREDICTED: hypothetical protein XP_002342903 [Homo ... 67 3e-11
gi|239743600 PREDICTED: hypothetical protein XP_002342902 [Homo ... 67 3e-11
gi|239743598 PREDICTED: hypothetical protein XP_002342901 [Homo ... 67 3e-11
gi|239743596 PREDICTED: hypothetical protein XP_002342900 [Homo ... 67 3e-11
gi|239743594 PREDICTED: hypothetical protein XP_002342913, parti... 67 3e-11
gi|126273519 exonuclease GOR [Homo sapiens] 67 3e-11
gi|188536114 PAN2 polyA specific ribonuclease subunit homolog is... 52 8e-07
gi|188536112 PAN2 polyA specific ribonuclease subunit homolog is... 52 8e-07
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa... 39 0.007
gi|188536004 zinc finger protein 469 [Homo sapiens] 38 0.012
gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens] 38 0.016
gi|5031749 high-mobility group nucleosomal binding domain 2 [Hom... 37 0.020
gi|169163639 PREDICTED: hypothetical protein [Homo sapiens] 36 0.046
gi|88954992 PREDICTED: hypothetical protein [Homo sapiens] 36 0.046
gi|88953166 PREDICTED: hypothetical protein [Homo sapiens] 36 0.046
gi|33667044 ABI gene family, member 3 (NESH) binding protein [Ho... 36 0.046
gi|169165669 PREDICTED: similar to high-mobility group nucleosom... 35 0.078
gi|113415254 PREDICTED: similar to high-mobility group nucleosom... 35 0.078
gi|113414676 PREDICTED: similar to high-mobility group nucleosom... 35 0.078
gi|239755359 PREDICTED: similar to hCG2040565 [Homo sapiens] 35 0.10
gi|239749851 PREDICTED: similar to hCG2040565 [Homo sapiens] 35 0.10
gi|239744152 PREDICTED: hypothetical protein XP_002343066 [Homo ... 35 0.10
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 35 0.10
>gi|13569960 interferon stimulated exonuclease gene 20kDa-like 2
[Homo sapiens]
Length = 353
Score = 721 bits (1862), Expect = 0.0
Identities = 353/353 (100%), Positives = 353/353 (100%)
Query: 1 MSTLLLNLDFGEPPPKKALEGNAKHRNFVKKRRLLERRGFLSKKNQPPSKAPKLHSEPSK 60
MSTLLLNLDFGEPPPKKALEGNAKHRNFVKKRRLLERRGFLSKKNQPPSKAPKLHSEPSK
Sbjct: 1 MSTLLLNLDFGEPPPKKALEGNAKHRNFVKKRRLLERRGFLSKKNQPPSKAPKLHSEPSK 60
Query: 61 KGETPTVDGTWKTPSFPKKKTAASSNGSGQPLDKKAAVSWLTPAPSKKADSVAAKVDLLG 120
KGETPTVDGTWKTPSFPKKKTAASSNGSGQPLDKKAAVSWLTPAPSKKADSVAAKVDLLG
Sbjct: 61 KGETPTVDGTWKTPSFPKKKTAASSNGSGQPLDKKAAVSWLTPAPSKKADSVAAKVDLLG 120
Query: 121 EFQSALPKINSHPTRSQKKSSQKKSSKKNHPQKNAPQNSTQAHSENKCSGASQKLPRKMV 180
EFQSALPKINSHPTRSQKKSSQKKSSKKNHPQKNAPQNSTQAHSENKCSGASQKLPRKMV
Sbjct: 121 EFQSALPKINSHPTRSQKKSSQKKSSKKNHPQKNAPQNSTQAHSENKCSGASQKLPRKMV 180
Query: 181 AIDCEMVGTGPKGHVSSLARCSIVNYNGDVLYDEYILPPCHIVDYRTRWSGIRKQHMVNA 240
AIDCEMVGTGPKGHVSSLARCSIVNYNGDVLYDEYILPPCHIVDYRTRWSGIRKQHMVNA
Sbjct: 181 AIDCEMVGTGPKGHVSSLARCSIVNYNGDVLYDEYILPPCHIVDYRTRWSGIRKQHMVNA 240
Query: 241 TPFKIARGQILKILTGKIVVGHAIHNDFKALQYFHPKSLTRDTSHIPPLNRKADCPENAT 300
TPFKIARGQILKILTGKIVVGHAIHNDFKALQYFHPKSLTRDTSHIPPLNRKADCPENAT
Sbjct: 241 TPFKIARGQILKILTGKIVVGHAIHNDFKALQYFHPKSLTRDTSHIPPLNRKADCPENAT 300
Query: 301 MSLKHLTKKLLNRDIQVGKSGHSSVEDAQATMELYKLVEVEWEEHLARNPPTD 353
MSLKHLTKKLLNRDIQVGKSGHSSVEDAQATMELYKLVEVEWEEHLARNPPTD
Sbjct: 301 MSLKHLTKKLLNRDIQVGKSGHSSVEDAQATMELYKLVEVEWEEHLARNPPTD 353
>gi|194239666 interferon stimulated exonuclease gene 20kDa-like 1
[Homo sapiens]
Length = 325
Score = 228 bits (582), Expect = 5e-60
Identities = 110/179 (61%), Positives = 139/179 (77%)
Query: 171 ASQKLPRKMVAIDCEMVGTGPKGHVSSLARCSIVNYNGDVLYDEYILPPCHIVDYRTRWS 230
AS LP K VAIDCEMVGTGP+G VS LARCSIV+Y+G+VLYD+YI P I DYRTRWS
Sbjct: 102 ASGPLPSKCVAIDCEMVGTGPRGRVSELARCSIVSYHGNVLYDKYIRPEMPIADYRTRWS 161
Query: 231 GIRKQHMVNATPFKIARGQILKILTGKIVVGHAIHNDFKALQYFHPKSLTRDTSHIPPLN 290
GI +QHM A PF++A+ +ILK+L GK+VVGHA+HNDF+AL+Y HP+S TRDT+++P
Sbjct: 162 GITRQHMRKAVPFQVAQKEILKLLKGKVVVGHALHNDFQALKYVHPRSQTRDTTYVPNFL 221
Query: 291 RKADCPENATMSLKHLTKKLLNRDIQVGKSGHSSVEDAQATMELYKLVEVEWEEHLARN 349
+ A +SLK L +LL++ IQVG+ GHSSVEDA MELY+LVEV+WE+ AR+
Sbjct: 222 SEPGLHTRARVSLKDLALQLLHKKIQVGQHGHSSVEDATTAMELYRLVEVQWEQQEARS 280
>gi|6857800 interferon stimulated exonuclease [Homo sapiens]
Length = 181
Score = 152 bits (383), Expect = 6e-37
Identities = 84/161 (52%), Positives = 112/161 (69%), Gaps = 1/161 (0%)
Query: 177 RKMVAIDCEMVGTGPKGHVSSLARCSIVNYNGDVLYDEYILPPCHIVDYRTRWSGIRKQH 236
R++VA+DCEMVG GP S LARCS+VN +G VLYD++I P I DYRTR SG+ QH
Sbjct: 5 REVVAMDCEMVGLGPHRE-SGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQH 63
Query: 237 MVNATPFKIARGQILKILTGKIVVGHAIHNDFKALQYFHPKSLTRDTSHIPPLNRKADCP 296
MV ATPF +AR +IL++L GK+VVGH + +DF+AL+ DTS L R+A
Sbjct: 64 MVGATPFAVARLEILQLLKGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLD 123
Query: 297 ENATMSLKHLTKKLLNRDIQVGKSGHSSVEDAQATMELYKL 337
+SL+ L+++LL++ IQ GHSSVEDA+ATMELY++
Sbjct: 124 HCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQI 164
>gi|76781492 XPMC2 prevents mitotic catastrophe 2 homolog [Homo
sapiens]
Length = 422
Score = 138 bits (348), Expect = 7e-33
Identities = 98/314 (31%), Positives = 156/314 (49%), Gaps = 29/314 (9%)
Query: 50 KAPKLHSEPSKKGETPTVDGTWKTPSFPKKKTAASSNGSGQPLDKKAAVSWLTPAPSKKA 109
K PK+ + +KK +P V G + P+ ++ + S SG +D++A V T A +
Sbjct: 98 KKPKIIQQ-NKKETSPQVKGE-EMPAGKDQEASRGSVPSGSKMDRRAPVP-RTKASGTEH 154
Query: 110 DSVAAKVDLLGEFQSALPKINSHPTRSQKKSSQKKSSKKN---------------HPQKN 154
+ K G+ I H R K+++ ++++ P+
Sbjct: 155 NKKGTKERTNGDIVPERGDIE-HKKRKAKEAAPAPPTEEDIWFDDVDPADIEAAIGPEAA 213
Query: 155 APQNSTQAHSENKCSGASQKLPR-----KMVAIDCEMVGTGPKGHVSSLARCSIVNYNGD 209
SE S + K + +A+DCEMVG GPKG S AR SIVN G
Sbjct: 214 KIARKQLGQSEGSVSLSLVKEQAFGGLTRALALDCEMVGVGPKGEESMAARVSIVNQYGK 273
Query: 210 VLYDEYILPPCHIVDYRTRWSGIRKQHMVNATPFKIARGQILKILTGKIVVGHAIHNDFK 269
+YD+Y+ P + DYRT SGIR +++ ++ + ++ ++L G+I+VGHA+HND K
Sbjct: 274 CVYDKYVKPTEPVTDYRTAVSGIRPENLKQGEELEVVQKEVAEMLKGRILVGHALHNDLK 333
Query: 270 ALQYFHPKSLTRDTSHIPPLNRKADCPENATMSLKHLTKKLLNRDIQVGKSGHSSVEDAQ 329
L HPK RDT P + ++ SL+ L++K+L +QV ++ H S++DAQ
Sbjct: 334 VLFLDHPKKKIRDTQKYKPFKSQV---KSGRPSLRLLSEKILG--LQVQQAEHCSIQDAQ 388
Query: 330 ATMELYKLVEVEWE 343
A M LY +V+ EWE
Sbjct: 389 AAMRLYVMVKKEWE 402
>gi|222136615 exonuclease NEF-sp isoform 2 [Homo sapiens]
Length = 743
Score = 68.9 bits (167), Expect = 6e-12
Identities = 56/173 (32%), Positives = 88/173 (50%), Gaps = 19/173 (10%)
Query: 167 KCSGA-SQKLPRKMVAIDCEMVGTGPKGHVSSLARCSIVNYNGDVLYDEYILPPCHIVDY 225
KC+G+ + P + +DCEM T KG L R S+V G + DE + P I+DY
Sbjct: 217 KCNGSIADNSP--LFGLDCEMCLTS-KGR--ELTRISLVAEGGCCVMDELVKPENKILDY 271
Query: 226 RTRWSGIRKQHMVN--ATPFKIARGQILKIL-TGKIVVGHAIHNDFKALQYFHPKSLTRD 282
T +SGI K+ ++N T K + Q+ +L ++VGH++ D +AL+ HP +
Sbjct: 272 LTSFSGITKK-ILNPVTTKLKDVQRQLKALLPPDAVLVGHSLDLDLRALKMIHPYVIDTS 330
Query: 283 TSHIPPLNRKADCPENATMSLKHLTKKLLNRDIQV-GKSGHSSVEDAQATMEL 334
++ R+ LK L K +L +DIQ + GH + EDA+ +EL
Sbjct: 331 LLYVREQGRR--------FKLKFLAKVILGKDIQCPDRLGHDATEDARTILEL 375
>gi|222136613 exonuclease NEF-sp isoform 1 [Homo sapiens]
Length = 774
Score = 68.9 bits (167), Expect = 6e-12
Identities = 56/173 (32%), Positives = 88/173 (50%), Gaps = 19/173 (10%)
Query: 167 KCSGA-SQKLPRKMVAIDCEMVGTGPKGHVSSLARCSIVNYNGDVLYDEYILPPCHIVDY 225
KC+G+ + P + +DCEM T KG L R S+V G + DE + P I+DY
Sbjct: 217 KCNGSIADNSP--LFGLDCEMCLTS-KGR--ELTRISLVAEGGCCVMDELVKPENKILDY 271
Query: 226 RTRWSGIRKQHMVN--ATPFKIARGQILKIL-TGKIVVGHAIHNDFKALQYFHPKSLTRD 282
T +SGI K+ ++N T K + Q+ +L ++VGH++ D +AL+ HP +
Sbjct: 272 LTSFSGITKK-ILNPVTTKLKDVQRQLKALLPPDAVLVGHSLDLDLRALKMIHPYVIDTS 330
Query: 283 TSHIPPLNRKADCPENATMSLKHLTKKLLNRDIQV-GKSGHSSVEDAQATMEL 334
++ R+ LK L K +L +DIQ + GH + EDA+ +EL
Sbjct: 331 LLYVREQGRR--------FKLKFLAKVILGKDIQCPDRLGHDATEDARTILEL 375
>gi|145199237 transcription elongation factor B polypeptide 3 binding
protein 1 [Homo sapiens]
Length = 1221
Score = 67.8 bits (164), Expect = 1e-11
Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 11/156 (7%)
Query: 181 AIDCEMVGTGPKGHVSSLARCSIVNYNGDVLYDEYILPPCHIVDYRTRWSGIRKQHMVN- 239
A+DCEM T + L R ++V+ + V+YD ++ P IVDY TR+SG+ + + +
Sbjct: 1062 ALDCEMSYTT---YGLELTRVTVVDTDVHVVYDTFVKPDNEIVDYNTRFSGVTEADLADT 1118
Query: 240 ATPFKIARGQILKILTG-KIVVGHAIHNDFKALQYFHPKSLTRDTSHIPPLNRKADCPEN 298
+ + + +L + + I++GH++ +D AL+ H S DTS + P + P
Sbjct: 1119 SVTLRDVQAVLLSMFSADTILIGHSLESDLLALKVIH--STVVDTSVLFP--HRLGLPYK 1174
Query: 299 ATMSLKHLTKKLLNRDIQVGKSGHSSVEDAQATMEL 334
SL++L L + IQ GHSS EDA A M L
Sbjct: 1175 --RSLRNLMADYLRQIIQDNVDGHSSSEDAGACMHL 1208
>gi|239743602 PREDICTED: hypothetical protein XP_002342903 [Homo
sapiens]
Length = 675
Score = 66.6 bits (161), Expect = 3e-11
Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 17/159 (10%)
Query: 181 AIDCEMVGTGPKGHVSSLARCSIVNYNGDVLYDEYILPPCHIVDYRTRWSGIRKQHMVNA 240
A+DCEM T H L R ++V+ + V+YD ++ P IVDY TR+SG+ + +
Sbjct: 503 ALDCEMCYTT---HGLELTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKT 559
Query: 241 TPFKIARGQILKILTG-----KIVVGHAIHNDFKALQYFHPKSLTRDTSHIPPLNRKADC 295
+ I Q+ IL I++GH++ +D AL+ H S DT+ + P
Sbjct: 560 S---ITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIH--STVVDTAVLFP--HYLGF 612
Query: 296 PENATMSLKHLTKKLLNRDIQVGKSGHSSVEDAQATMEL 334
P SL++L L + IQ + GH+S EDA A ++L
Sbjct: 613 PYK--RSLRNLAADYLAQIIQDSQDGHNSSEDANACLQL 649
>gi|239743600 PREDICTED: hypothetical protein XP_002342902 [Homo
sapiens]
Length = 675
Score = 66.6 bits (161), Expect = 3e-11
Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 17/159 (10%)
Query: 181 AIDCEMVGTGPKGHVSSLARCSIVNYNGDVLYDEYILPPCHIVDYRTRWSGIRKQHMVNA 240
A+DCEM T H L R ++V+ + V+YD ++ P IVDY TR+SG+ + +
Sbjct: 503 ALDCEMCYTT---HGLELTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKT 559
Query: 241 TPFKIARGQILKILTG-----KIVVGHAIHNDFKALQYFHPKSLTRDTSHIPPLNRKADC 295
+ I Q+ IL I++GH++ +D AL+ H S DT+ + P
Sbjct: 560 S---ITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIH--STVVDTAVLFP--HYLGF 612
Query: 296 PENATMSLKHLTKKLLNRDIQVGKSGHSSVEDAQATMEL 334
P SL++L L + IQ + GH+S EDA A ++L
Sbjct: 613 PYK--RSLRNLAADYLAQIIQDSQDGHNSSEDANACLQL 649
>gi|239743598 PREDICTED: hypothetical protein XP_002342901 [Homo
sapiens]
Length = 675
Score = 66.6 bits (161), Expect = 3e-11
Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 17/159 (10%)
Query: 181 AIDCEMVGTGPKGHVSSLARCSIVNYNGDVLYDEYILPPCHIVDYRTRWSGIRKQHMVNA 240
A+DCEM T H L R ++V+ + V+YD ++ P IVDY TR+SG+ + +
Sbjct: 503 ALDCEMCYTT---HGLELTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKT 559
Query: 241 TPFKIARGQILKILTG-----KIVVGHAIHNDFKALQYFHPKSLTRDTSHIPPLNRKADC 295
+ I Q+ IL I++GH++ +D AL+ H S DT+ + P
Sbjct: 560 S---ITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIH--STVVDTAVLFP--HYLGF 612
Query: 296 PENATMSLKHLTKKLLNRDIQVGKSGHSSVEDAQATMEL 334
P SL++L L + IQ + GH+S EDA A ++L
Sbjct: 613 PYK--RSLRNLAADYLAQIIQDSQDGHNSSEDANACLQL 649
>gi|239743596 PREDICTED: hypothetical protein XP_002342900 [Homo
sapiens]
Length = 675
Score = 66.6 bits (161), Expect = 3e-11
Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 17/159 (10%)
Query: 181 AIDCEMVGTGPKGHVSSLARCSIVNYNGDVLYDEYILPPCHIVDYRTRWSGIRKQHMVNA 240
A+DCEM T H L R ++V+ + V+YD ++ P IVDY TR+SG+ + +
Sbjct: 503 ALDCEMCYTT---HGLELTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKT 559
Query: 241 TPFKIARGQILKILTG-----KIVVGHAIHNDFKALQYFHPKSLTRDTSHIPPLNRKADC 295
+ I Q+ IL I++GH++ +D AL+ H S DT+ + P
Sbjct: 560 S---ITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIH--STVVDTAVLFP--HYLGF 612
Query: 296 PENATMSLKHLTKKLLNRDIQVGKSGHSSVEDAQATMEL 334
P SL++L L + IQ + GH+S EDA A ++L
Sbjct: 613 PYK--RSLRNLAADYLAQIIQDSQDGHNSSEDANACLQL 649
>gi|239743594 PREDICTED: hypothetical protein XP_002342913, partial
[Homo sapiens]
Length = 552
Score = 66.6 bits (161), Expect = 3e-11
Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 17/159 (10%)
Query: 181 AIDCEMVGTGPKGHVSSLARCSIVNYNGDVLYDEYILPPCHIVDYRTRWSGIRKQHMVNA 240
A+DCEM T H L R ++V+ + V+YD ++ P IVDY TR+SG+ + +
Sbjct: 380 ALDCEMCYTT---HGLELTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKT 436
Query: 241 TPFKIARGQILKILTG-----KIVVGHAIHNDFKALQYFHPKSLTRDTSHIPPLNRKADC 295
+ I Q+ IL I++GH++ +D AL+ H S DT+ + P
Sbjct: 437 S---ITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIH--STVVDTAVLFP--HYLGF 489
Query: 296 PENATMSLKHLTKKLLNRDIQVGKSGHSSVEDAQATMEL 334
P SL++L L + IQ + GH+S EDA A ++L
Sbjct: 490 PYK--RSLRNLAADYLAQIIQDSQDGHNSSEDANACLQL 526
>gi|126273519 exonuclease GOR [Homo sapiens]
Length = 675
Score = 66.6 bits (161), Expect = 3e-11
Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 17/159 (10%)
Query: 181 AIDCEMVGTGPKGHVSSLARCSIVNYNGDVLYDEYILPPCHIVDYRTRWSGIRKQHMVNA 240
A+DCEM T H L R ++V+ + V+YD ++ P IVDY TR+SG+ + +
Sbjct: 503 ALDCEMCYTT---HGLELTRVTVVDADMRVVYDTFVKPDNEIVDYNTRFSGVTEADVAKT 559
Query: 241 TPFKIARGQILKILTG-----KIVVGHAIHNDFKALQYFHPKSLTRDTSHIPPLNRKADC 295
+ I Q+ IL I++GH++ +D AL+ H S DT+ + P
Sbjct: 560 S---ITLPQVQAILLSFFSAQTILIGHSLESDLLALKLIH--STVVDTAVLFP--HYLGF 612
Query: 296 PENATMSLKHLTKKLLNRDIQVGKSGHSSVEDAQATMEL 334
P SL++L L + IQ + GH+S EDA A ++L
Sbjct: 613 PYK--RSLRNLAADYLAQIIQDSQDGHNSSEDASACLQL 649
>gi|188536114 PAN2 polyA specific ribonuclease subunit homolog isoform
2 [Homo sapiens]
Length = 1202
Score = 52.0 bits (123), Expect = 8e-07
Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 23/169 (13%)
Query: 183 DCEMVGTGPKGHVS----SLARCSIVNYNGD----VLYDEYILPPCHIVDYRTRWSGIRK 234
+ E+ G K + S+AR + V G D+YI +VDY T++SGI+
Sbjct: 988 EAELRSDGTKSTIKPSQMSVARITCVRGQGPNEGIPFIDDYISTQEQVVDYLTQYSGIKP 1047
Query: 235 QHM---VNATPFKIARGQILKIL----TGKIVVGHAIHNDFKALQYFHPKSLTRDTSHIP 287
+ +++ + LK+ G VGH + DF+ + PK DT ++
Sbjct: 1048 GDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFVGHGLQKDFRVINLMVPKDQVLDTVYLF 1107
Query: 288 PLNRKADCPENATMSLKHLTKKLLNRDIQVGKSGHSSVEDAQATMELYK 336
+ RK +SL+ L L D+++ H S+EDA+ ++LY+
Sbjct: 1108 HMPRK------RMISLRFLAWYFL--DLKIQGETHDSIEDARTALQLYR 1148
>gi|188536112 PAN2 polyA specific ribonuclease subunit homolog isoform
1 [Homo sapiens]
Length = 1198
Score = 52.0 bits (123), Expect = 8e-07
Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 23/169 (13%)
Query: 183 DCEMVGTGPKGHVS----SLARCSIVNYNGD----VLYDEYILPPCHIVDYRTRWSGIRK 234
+ E+ G K + S+AR + V G D+YI +VDY T++SGI+
Sbjct: 984 EAELRSDGTKSTIKPSQMSVARITCVRGQGPNEGIPFIDDYISTQEQVVDYLTQYSGIKP 1043
Query: 235 QHM---VNATPFKIARGQILKIL----TGKIVVGHAIHNDFKALQYFHPKSLTRDTSHIP 287
+ +++ + LK+ G VGH + DF+ + PK DT ++
Sbjct: 1044 GDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFVGHGLQKDFRVINLMVPKDQVLDTVYLF 1103
Query: 288 PLNRKADCPENATMSLKHLTKKLLNRDIQVGKSGHSSVEDAQATMELYK 336
+ RK +SL+ L L D+++ H S+EDA+ ++LY+
Sbjct: 1104 HMPRK------RMISLRFLAWYFL--DLKIQGETHDSIEDARTALQLYR 1144
>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
sapiens]
Length = 699
Score = 38.9 bits (89), Expect = 0.007
Identities = 48/195 (24%), Positives = 77/195 (39%), Gaps = 44/195 (22%)
Query: 13 PPPKKALEGNAKHRNFVKKRRLLERRGFLSKKNQPPSKAPKLHSEPSKKGETPTVDGTWK 72
PPPKK+L G + V+K++ +E ++ S SE KK T V
Sbjct: 298 PPPKKSL-GTQPPKKAVEKQQPVE-------SSEDSSDESDSSSEEEKKPPTKAVVSKAT 349
Query: 73 TPSFPKKKTAASSN------------------GSGQPLDKKAAVSWLTPAPSKKADSVAA 114
T P KK A SS+ G+ + K AV+ +PA A A
Sbjct: 350 TKPPPAKKAAESSSDSSDSDSSEDDEAPSKPAGTTKNSSNKPAVTTKSPAVKPAA---AP 406
Query: 115 KVDLLGEFQSALPKINSHPTRSQKKSSQKKSSKK---------------NHPQKNAPQNS 159
K + G + K +S + + SS+++ +KK + P K APQ S
Sbjct: 407 KQPVGGGQKLLTRKADSSSSEEESSSSEEEKTKKMVATTKPKATAKAALSLPAKQAPQGS 466
Query: 160 TQAHSENKCSGASQK 174
+ S++ S + ++
Sbjct: 467 RDSSSDSDSSSSEEE 481
Score = 29.6 bits (65), Expect = 4.3
Identities = 42/183 (22%), Positives = 68/183 (37%), Gaps = 36/183 (19%)
Query: 13 PPPKKALEGNAKHRNFVKKRRLLERRGFLSKKNQPPSKAPKLHSEPSKKGETPTVDGTWK 72
PP KKA E ++ + S+ ++ PSK S K T K
Sbjct: 353 PPAKKAAESSSDSSDSDS-----------SEDDEAPSKPAGTTKNSSNKPAVTTKSPAVK 401
Query: 73 TPSFPKK----------------KTAASSNGSGQPLDKKAAVSWLTPAPSKKADSVAAKV 116
+ PK+ + S+ S + KK + A +K A S+ AK
Sbjct: 402 PAAAPKQPVGGGQKLLTRKADSSSSEEESSSSEEEKTKKMVATTKPKATAKAALSLPAKQ 461
Query: 117 DLLGEFQSALPKINSHPTRSQKKSSQKKSSKKNHPQKNA-------PQNSTQAHSENKCS 169
G S+ +S ++K+S KS+ K PQK A P ++ + +E+ S
Sbjct: 462 APQGSRDSSSDSDSSSSEEEEEKTS--KSAVKKKPQKVAGGAAPSKPASAKKGKAESSNS 519
Query: 170 GAS 172
+S
Sbjct: 520 SSS 522
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 38.1 bits (87), Expect = 0.012
Identities = 47/175 (26%), Positives = 56/175 (32%), Gaps = 30/175 (17%)
Query: 48 PSKAPKLHSEPSKK------GETPTVDGTWKTPSFPKKKTAASSNGSGQPLDKKAAVSWL 101
PSKA K P K GE P+ PK K SS GSG P
Sbjct: 3661 PSKALKFPVHPRKAVGSLAPGELARGTENGMKPATPKAKPGPSSQGSGSPRPGTKTGGGS 3720
Query: 102 TPAP-SKKADSVAAKVDLLGEFQSALPKINSHPTRSQKKSSQK----------------- 143
P P S + S A F S P P R+Q KS K
Sbjct: 3721 QPQPASGQLQSETATTPAKPSFPSRSPAPERLPARAQAKSCTKGPREAGEQGPHGSLGPK 3780
Query: 144 ----KSSKKNHPQKNAPQNSTQAHSENKCSGASQKLPR--KMVAIDCEMVGTGPK 192
S+K+ Q P S S + A K PR + A ++ T PK
Sbjct: 3781 EKGESSTKRKKGQVPGPARSESVGSFGRAPSAPDKPPRTPRKQATPSRVLPTKPK 3835
>gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens]
Length = 1163
Score = 37.7 bits (86), Expect = 0.016
Identities = 46/186 (24%), Positives = 72/186 (38%), Gaps = 20/186 (10%)
Query: 43 KKNQPPS----KAPKLHSEPSKKGETPTVDGTWKTPSFPKKKTAASSNGSGQPLDKKAAV 98
K+ +PP P+ H+ ++K + V K + AS + + DK +A
Sbjct: 732 KETEPPKGEKKNVPEKHTREAQKQASEKVSNKGKRKHKNEDDNRASESKKPKTEDKNSAG 791
Query: 99 SWLTPAPSKKADSVAAKVDLL----GEFQSALPKINSHPTRSQ---KKSSQKKSSKKNHP 151
+ S A + DLL G S PK H +R + + SS K SS N
Sbjct: 792 HKPSSNRESSKQSAAKEKDLLPSPAGPVPSKDPK-TEHGSRKRTISQSSSLKSSSNSNKE 850
Query: 152 ----QKNAPQNSTQAHSENKCSGASQKLPRKMVAIDCEMVGTGPKGHVSSLARCSIV--- 204
KN+ S Q +E K S +S+++ K + + P S R +V
Sbjct: 851 TSGSSKNSSSTSKQKKTEGKTSSSSKEVKEKAPSSSSNCPPSAPTLDSSKPRRTKLVFDD 910
Query: 205 -NYNGD 209
NY+ D
Sbjct: 911 RNYSAD 916
Score = 29.6 bits (65), Expect = 4.3
Identities = 31/154 (20%), Positives = 63/154 (40%), Gaps = 10/154 (6%)
Query: 16 KKALEGNAKHRNFVKKRRLLERRGF--LSKKNQPPSKAPKLHSEPSKKGETPTVDGTWKT 73
K + + N K + R E++ + SK +Q + + + S E+ ++ + +T
Sbjct: 606 KGSRKPNIKKESKSSPRPTAEKKKYKSTSKSSQKSREIIETDTSSSDSDESESLPPSSQT 665
Query: 74 PSFPKKKTAASSNGSGQPLDKKAAVSWLTPAPSKKADSVAAKVDLLGEFQSALPKINSH- 132
P +P+ S + D +P K+ S ++ D + + KI+ +
Sbjct: 666 PKYPESNRTPVKPSSVEEEDSFFRQRMFSPMEEKELLSPLSEPD---DRYPLIVKIDLNL 722
Query: 133 ----PTRSQKKSSQKKSSKKNHPQKNAPQNSTQA 162
P + K++ K KKN P+K+ + QA
Sbjct: 723 LTRIPGKPYKETEPPKGEKKNVPEKHTREAQKQA 756
>gi|5031749 high-mobility group nucleosomal binding domain 2 [Homo
sapiens]
Length = 90
Score = 37.4 bits (85), Expect = 0.020
Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 8/74 (10%)
Query: 15 PKKALEGNAKHRNFVKKRRLLERRGFLSKKNQPPSKAPKLHSEPSKKGETPTVDGTWKTP 74
PK+ EG+AK K R LS K PP PK P+KKGE K P
Sbjct: 2 PKRKAEGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGE--------KVP 53
Query: 75 SFPKKKTAASSNGS 88
K K A G+
Sbjct: 54 KGKKGKADAGKEGN 67
>gi|169163639 PREDICTED: hypothetical protein [Homo sapiens]
Length = 90
Score = 36.2 bits (82), Expect = 0.046
Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 15 PKKALEGNAKHRNFVKKRRLLERRGFLSKKNQPPSKAPKLHSEPSKKGETPTVDGTWKTP 74
PK+ EG+AK K R LS K PP+ PK P+KKGE K P
Sbjct: 2 PKRKGEGDAKGDKAKVKNEPQRRPMRLSAKPAPPTPEPKPEKAPAKKGE--------KVP 53
Query: 75 SFPKKKTAASSNGS 88
K K A G+
Sbjct: 54 KGKKGKAYAGKEGN 67
>gi|88954992 PREDICTED: hypothetical protein [Homo sapiens]
Length = 90
Score = 36.2 bits (82), Expect = 0.046
Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 15 PKKALEGNAKHRNFVKKRRLLERRGFLSKKNQPPSKAPKLHSEPSKKGETPTVDGTWKTP 74
PK+ EG+AK K R LS K PP+ PK P+KKGE K P
Sbjct: 2 PKRKGEGDAKGDKAKVKNEPQRRPMRLSAKPAPPTPEPKPEKAPAKKGE--------KVP 53
Query: 75 SFPKKKTAASSNGS 88
K K A G+
Sbjct: 54 KGKKGKAYAGKEGN 67
>gi|88953166 PREDICTED: hypothetical protein [Homo sapiens]
Length = 90
Score = 36.2 bits (82), Expect = 0.046
Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 15 PKKALEGNAKHRNFVKKRRLLERRGFLSKKNQPPSKAPKLHSEPSKKGETPTVDGTWKTP 74
PK+ EG+AK K R LS K PP+ PK P+KKGE K P
Sbjct: 2 PKRKGEGDAKGDKAKVKNEPQRRPMRLSAKPAPPTPEPKPEKAPAKKGE--------KVP 53
Query: 75 SFPKKKTAASSNGS 88
K K A G+
Sbjct: 54 KGKKGKAYAGKEGN 67
>gi|33667044 ABI gene family, member 3 (NESH) binding protein [Homo
sapiens]
Length = 1075
Score = 36.2 bits (82), Expect = 0.046
Identities = 38/144 (26%), Positives = 56/144 (38%), Gaps = 16/144 (11%)
Query: 32 RRLLERRGFLSKKNQP--PSKAPKLHSEPSKKGETPTVDGTWKTPSFPKKKTA------- 82
R L + R L+ P P K ++ + P + TP T PS PK++
Sbjct: 424 RTLEQPRATLAPSETPFVPQKL-EIFTSPEMQPTTPAPQQTTSIPSTPKRRPRPKPPRTK 482
Query: 83 ---ASSNGSGQP-LDKKAAVSWLTPAPSK-KADSVAAKVDLLGEFQSALPKINSHPTRSQ 137
+S G+ P + K +W TPAP K + S+ K+ L E P P
Sbjct: 483 PERTTSAGTITPKISKSPEPTWTTPAPGKTQFISLKPKIPLSPEVTHTKPAPKQTPRAPP 542
Query: 138 K-KSSQKKSSKKNHPQKNAPQNST 160
K K+S + + P PQ T
Sbjct: 543 KPKTSPRPRIPQTQPVPKVPQRVT 566
>gi|169165669 PREDICTED: similar to high-mobility group
nucleosomal binding domain 2 [Homo sapiens]
Length = 90
Score = 35.4 bits (80), Expect = 0.078
Identities = 25/74 (33%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 15 PKKALEGNAKHRNFVKKRRLLERRGFLSKKNQPPSKAPKLHSEPSKKGETPTVDGTWKTP 74
PK+ EG+ K K R LS K PP PK P+KKGE K P
Sbjct: 2 PKRKAEGDTKRDKAKVKDEPQRRSVRLSAKPAPPKPEPKPKKAPAKKGE--------KVP 53
Query: 75 SFPKKKTAASSNGS 88
K K A G+
Sbjct: 54 KGKKGKADAGEEGN 67
>gi|113415254 PREDICTED: similar to high-mobility group
nucleosomal binding domain 2 [Homo sapiens]
Length = 90
Score = 35.4 bits (80), Expect = 0.078
Identities = 25/74 (33%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 15 PKKALEGNAKHRNFVKKRRLLERRGFLSKKNQPPSKAPKLHSEPSKKGETPTVDGTWKTP 74
PK+ EG+ K K R LS K PP PK P+KKGE K P
Sbjct: 2 PKRKAEGDTKRDKAKVKDEPQRRSVRLSAKPAPPKPEPKPKKAPAKKGE--------KVP 53
Query: 75 SFPKKKTAASSNGS 88
K K A G+
Sbjct: 54 KGKKGKADAGEEGN 67
>gi|113414676 PREDICTED: similar to high-mobility group
nucleosomal binding domain 2 [Homo sapiens]
Length = 90
Score = 35.4 bits (80), Expect = 0.078
Identities = 25/74 (33%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 15 PKKALEGNAKHRNFVKKRRLLERRGFLSKKNQPPSKAPKLHSEPSKKGETPTVDGTWKTP 74
PK+ EG+ K K R LS K PP PK P+KKGE K P
Sbjct: 2 PKRKAEGDTKRDKAKVKDEPQRRSVRLSAKPAPPKPEPKPKKAPAKKGE--------KVP 53
Query: 75 SFPKKKTAASSNGS 88
K K A G+
Sbjct: 54 KGKKGKADAGEEGN 67
>gi|239755359 PREDICTED: similar to hCG2040565 [Homo sapiens]
Length = 130
Score = 35.0 bits (79), Expect = 0.10
Identities = 20/49 (40%), Positives = 25/49 (51%)
Query: 15 PKKALEGNAKHRNFVKKRRLLERRGFLSKKNQPPSKAPKLHSEPSKKGE 63
PK+ EG+AK K + R LS K PP PK + P+KKGE
Sbjct: 40 PKRKAEGDAKGDKAKVKDKPQRRSMRLSAKPAPPKPEPKPKNAPAKKGE 88
>gi|239749851 PREDICTED: similar to hCG2040565 [Homo sapiens]
Length = 171
Score = 35.0 bits (79), Expect = 0.10
Identities = 20/49 (40%), Positives = 25/49 (51%)
Query: 15 PKKALEGNAKHRNFVKKRRLLERRGFLSKKNQPPSKAPKLHSEPSKKGE 63
PK+ EG+AK K + R LS K PP PK + P+KKGE
Sbjct: 81 PKRKAEGDAKGDKAKVKDKPQRRSMRLSAKPAPPKPEPKPKNAPAKKGE 129
>gi|239744152 PREDICTED: hypothetical protein XP_002343066 [Homo
sapiens]
Length = 171
Score = 35.0 bits (79), Expect = 0.10
Identities = 20/49 (40%), Positives = 25/49 (51%)
Query: 15 PKKALEGNAKHRNFVKKRRLLERRGFLSKKNQPPSKAPKLHSEPSKKGE 63
PK+ EG+AK K + R LS K PP PK + P+KKGE
Sbjct: 81 PKRKAEGDAKGDKAKVKDKPQRRSMRLSAKPAPPKPEPKPKNAPAKKGE 129
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 35.0 bits (79), Expect = 0.10
Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 16/112 (14%)
Query: 48 PSKAPKLHSEPSKKGETPTVDGTWKTPSFPKKKTAASSNGSGQPLDKKAAVSWLTPAPSK 107
P AP L EP E P G +G P A PA K
Sbjct: 344 PESAPTLRVEPPSPPEGPPNPGP----------DGGKQDGEAPPAGPCA------PATDK 387
Query: 108 KADSVAAKVDLLGEFQSALPKINSHPTRSQKKSSQKKSSKKNHPQKNAPQNS 159
+ V A D+ F +A+P+ ++ P + ++ + S ++ P+++ P+ +
Sbjct: 388 AEEVVCAPEDVASPFPTAIPEGDTTPPETDPAATSEAPSARDGPERSVPKEA 439
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.128 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,301,227
Number of Sequences: 37866
Number of extensions: 702687
Number of successful extensions: 2777
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 132
Number of HSP's that attempted gapping in prelim test: 2610
Number of HSP's gapped (non-prelim): 284
length of query: 353
length of database: 18,247,518
effective HSP length: 103
effective length of query: 250
effective length of database: 14,347,320
effective search space: 3586830000
effective search space used: 3586830000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.