Guide to the Human Genome
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Name: LOC100288691 Sequence: fasta or formatted (171aa) NCBI GI: 239744152
Description:

PREDICTED: hypothetical protein XP_002343066

Not currently referenced in the text

Other entries for this name:
alt mRNA {171aa} PREDICTED: similar to hCG2040565
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.6         25           2
 C cysteine            2.9          5           2
 D aspartate           6.4         11           2
 E glutamate           8.8         15           2
 F phenylalanine       0.6          1           1
 G glycine             8.2         14           1
 H histidine           1.2          2           1
 I isoleucine          1.2          2           1
 K lysine             14.0         24           2
 L leucine             2.9          5           1
 M methionine          1.8          3           1
 N asparagine          3.5          6           2
 P proline             8.8         15           2
 Q glutamine           4.7          8           1
 R arginine            7.6         13           2
 S serine              4.7          8           2
 T threonine           3.5          6           1
 V valine              3.5          6           1
 W tryptophan          1.2          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343066 
LOC100288691          1.000   PREDICTED: similar to hCG2040565 
LOC100293829          0.605   PREDICTED: similar to hCG2040565 
LOC729505             0.444   PREDICTED: hypothetical protein 
LOC729505             0.444   PREDICTED: hypothetical protein 
LOC729505             0.444   PREDICTED: hypothetical protein 
HMGN2                 0.432   high-mobility group nucleosomal binding domain 2 [Hom...
LOC648822             0.419   PREDICTED: similar to hCG2040565 
LOC648822             0.419   PREDICTED: similar to hCG2040565 
LOC648822             0.416   PREDICTED: similar to hCG2040565 
LOC100292625          0.401   PREDICTED: similar to hCG2040565 
LOC100291244          0.401   PREDICTED: hypothetical protein XP_002348261 
LOC100287582          0.401   PREDICTED: hypothetical protein XP_002342251 
LOC729687             0.398   PREDICTED: similar to high-mobility group nucleosom...
LOC729687             0.398   PREDICTED: similar to high-mobility group nucleosom...
LOC729687             0.398   PREDICTED: similar to high-mobility group nucleosom...
LOC646049             0.377   PREDICTED: hypothetical protein 
LOC646049             0.377   PREDICTED: hypothetical protein 
LOC646049             0.377   PREDICTED: hypothetical protein 
HMGN4                 0.377   high mobility group nucleosomal binding domain 4 [Ho...
LOC644992             0.374   PREDICTED: hypothetical protein 
LOC644992             0.374   PREDICTED: hypothetical protein 
LOC644992             0.374   PREDICTED: hypothetical protein 
LOC646853             0.365   PREDICTED: similar to high-mobility group nucleosom...
LOC646853             0.365   PREDICTED: similar to high-mobility group nucleosom...
LOC646853             0.365   PREDICTED: similar to high-mobility group nucleosom...
LOC645263             0.313   PREDICTED: hypothetical protein 
LOC645263             0.313   PREDICTED: hypothetical protein 
LOC645263             0.313   PREDICTED: hypothetical protein 
LOC100128372          0.252   PREDICTED: similar to hCG2040192 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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