Guide to the Human Genome
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Name: LOC100293829 Sequence: fasta or formatted (130aa) NCBI GI: 239755359
Description:

PREDICTED: similar to hCG2040565

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.4         20           2
 C cysteine            2.3          3           2
 D aspartate           6.2          8           1
 E glutamate           6.9          9           1
 F phenylalanine       0.0          0           0
 G glycine             8.5         11           1
 H histidine           0.8          1           1
 I isoleucine          0.8          1           1
 K lysine             18.5         24           2
 L leucine             2.3          3           1
 M methionine          1.5          2           1
 N asparagine          4.6          6           2
 P proline            10.8         14           2
 Q glutamine           3.1          4           1
 R arginine            8.5         11           2
 S serine              3.1          4           1
 T threonine           3.1          4           1
 V valine              3.8          5           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2040565 
LOC100288691          0.819   PREDICTED: similar to hCG2040565 
LOC100288691          0.819   PREDICTED: hypothetical protein XP_002343066 
LOC729505             0.601   PREDICTED: hypothetical protein 
LOC729505             0.601   PREDICTED: hypothetical protein 
LOC729505             0.601   PREDICTED: hypothetical protein 
HMGN2                 0.584   high-mobility group nucleosomal binding domain 2 [Hom...
LOC648822             0.568   PREDICTED: similar to hCG2040565 
LOC648822             0.568   PREDICTED: similar to hCG2040565 
LOC648822             0.564   PREDICTED: similar to hCG2040565 
LOC729687             0.539   PREDICTED: similar to high-mobility group nucleosom...
LOC729687             0.539   PREDICTED: similar to high-mobility group nucleosom...
LOC729687             0.539   PREDICTED: similar to high-mobility group nucleosom...
LOC100292625          0.535   PREDICTED: similar to hCG2040565 
LOC100291244          0.535   PREDICTED: hypothetical protein XP_002348261 
LOC100287582          0.535   PREDICTED: hypothetical protein XP_002342251 
LOC646049             0.510   PREDICTED: hypothetical protein 
LOC646049             0.510   PREDICTED: hypothetical protein 
LOC646049             0.510   PREDICTED: hypothetical protein 
HMGN4                 0.510   high mobility group nucleosomal binding domain 4 [Ho...
LOC644992             0.506   PREDICTED: hypothetical protein 
LOC644992             0.506   PREDICTED: hypothetical protein 
LOC644992             0.506   PREDICTED: hypothetical protein 
LOC646853             0.494   PREDICTED: similar to high-mobility group nucleosom...
LOC646853             0.494   PREDICTED: similar to high-mobility group nucleosom...
LOC646853             0.494   PREDICTED: similar to high-mobility group nucleosom...
LOC645263             0.424   PREDICTED: hypothetical protein 
LOC645263             0.424   PREDICTED: hypothetical protein 
LOC645263             0.424   PREDICTED: hypothetical protein 
LOC100128372          0.342   PREDICTED: similar to hCG2040192 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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