Guide to the Human Genome
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Name: LOC646049 Sequence: fasta or formatted (90aa) NCBI GI: 88953166
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {90aa} PREDICTED: hypothetical protein
alt mRNA {90aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.6         14           1
 C cysteine            0.0          0           0
 D aspartate           5.6          5           1
 E glutamate           8.9          8           1
 F phenylalanine       0.0          0           0
 G glycine            12.2         11           1
 H histidine           0.0          0           0
 I isoleucine          0.0          0           0
 K lysine             22.2         20           2
 L leucine             2.2          2           1
 M methionine          2.2          2           1
 N asparagine          4.4          4           2
 P proline            12.2         11           2
 Q glutamine           2.2          2           1
 R arginine            4.4          4           2
 S serine              2.2          2           1
 T threonine           2.2          2           1
 V valine              2.2          2           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.1          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC646049             1.000   PREDICTED: hypothetical protein 
LOC646049             1.000   PREDICTED: hypothetical protein 
HMGN2                 0.846   high-mobility group nucleosomal binding domain 2 [Hom...
LOC729505             0.815   PREDICTED: hypothetical protein 
LOC729505             0.815   PREDICTED: hypothetical protein 
LOC729505             0.815   PREDICTED: hypothetical protein 
LOC729687             0.790   PREDICTED: similar to high-mobility group nucleosom...
LOC729687             0.790   PREDICTED: similar to high-mobility group nucleosom...
LOC729687             0.790   PREDICTED: similar to high-mobility group nucleosom...
LOC100293829          0.765   PREDICTED: similar to hCG2040565 
LOC100288691          0.765   PREDICTED: similar to hCG2040565 
LOC100288691          0.765   PREDICTED: hypothetical protein XP_002343066 
LOC648822             0.728   PREDICTED: similar to hCG2040565 
LOC648822             0.728   PREDICTED: similar to hCG2040565 
LOC648822             0.728   PREDICTED: similar to hCG2040565 
HMGN4                 0.710   high mobility group nucleosomal binding domain 4 [Ho...
LOC646853             0.691   PREDICTED: similar to high-mobility group nucleosom...
LOC646853             0.691   PREDICTED: similar to high-mobility group nucleosom...
LOC646853             0.691   PREDICTED: similar to high-mobility group nucleosom...
LOC644992             0.685   PREDICTED: hypothetical protein 
LOC644992             0.685   PREDICTED: hypothetical protein 
LOC644992             0.685   PREDICTED: hypothetical protein 
LOC100292625          0.673   PREDICTED: similar to hCG2040565 
LOC100291244          0.673   PREDICTED: hypothetical protein XP_002348261 
LOC100287582          0.673   PREDICTED: hypothetical protein XP_002342251 
LOC645263             0.586   PREDICTED: hypothetical protein 
LOC645263             0.586   PREDICTED: hypothetical protein 
LOC645263             0.586   PREDICTED: hypothetical protein 
LOC100128372          0.512   PREDICTED: similar to hCG2040192 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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