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Search of human proteins with 6912626
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|6912626 fascin 2 isoform 1 [Homo sapiens]
(492 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|6912626 fascin 2 isoform 1 [Homo sapiens] 1019 0.0
gi|116295251 fascin 2 isoform 2 [Homo sapiens] 1005 0.0
gi|4507115 fascin 1 [Homo sapiens] 566 e-161
gi|9966791 fascin 3 [Homo sapiens] 171 2e-42
gi|4503693 fibroblast growth factor 17 precursor [Homo sapiens] 37 0.041
gi|15147350 fibroblast growth factor 8 isoform A precursor [Homo... 35 0.16
gi|5174439 fibroblast growth factor 8 isoform B precursor [Homo ... 35 0.16
gi|15147348 fibroblast growth factor 8 isoform E precursor [Homo... 35 0.16
gi|15147346 fibroblast growth factor 8 isoform F precursor [Homo... 35 0.16
gi|222352122 hypothetical protein LOC284297 [Homo sapiens] 32 1.0
gi|169169847 PREDICTED: hypothetical protein [Homo sapiens] 32 1.0
gi|169168886 PREDICTED: hypothetical protein [Homo sapiens] 32 1.0
gi|4507587 tumor necrosis factor receptor superfamily, member 7 ... 32 1.0
gi|4826726 fibroblast growth factor 19 precursor [Homo sapiens] 32 1.3
gi|194097386 gamma-aminobutyric acid (GABA) receptor, rho 1 [Hom... 32 1.3
gi|239742988 PREDICTED: hypothetical protein [Homo sapiens] 31 2.9
gi|153266866 gamma-aminobutyric acid (GABA) receptor, rho 2 prec... 30 3.8
gi|4557445 regulator of chromosome condensation and BTB domain c... 30 5.0
gi|112789562 interferon, gamma-inducible protein 16 [Homo sapiens] 29 8.5
gi|115529449 upstream binding transcription factor, RNA polymera... 29 8.5
gi|115529451 upstream binding transcription factor, RNA polymera... 29 8.5
gi|7657671 upstream binding transcription factor, RNA polymerase... 29 8.5
gi|25306287 mitochondrial elongation factor G2 isoform 2 [Homo s... 29 8.5
gi|25306283 mitochondrial elongation factor G2 isoform 3 [Homo s... 29 8.5
gi|19923640 mitochondrial elongation factor G2 isoform 1 [Homo s... 29 8.5
>gi|6912626 fascin 2 isoform 1 [Homo sapiens]
Length = 492
Score = 1019 bits (2634), Expect = 0.0
Identities = 492/492 (100%), Positives = 492/492 (100%)
Query: 1 MPTNGLHQVLKIQFGLVNDTDRYLTAESFGFKVNASAPSLKRKQTWVLEPDPGQGTAVLL 60
MPTNGLHQVLKIQFGLVNDTDRYLTAESFGFKVNASAPSLKRKQTWVLEPDPGQGTAVLL
Sbjct: 1 MPTNGLHQVLKIQFGLVNDTDRYLTAESFGFKVNASAPSLKRKQTWVLEPDPGQGTAVLL 60
Query: 61 RSSHLGRYLSAEEDGRVACEAEQPGRDCRFLVLPQPDGRWVLRSEPHGRFFGGTEDQLSC 120
RSSHLGRYLSAEEDGRVACEAEQPGRDCRFLVLPQPDGRWVLRSEPHGRFFGGTEDQLSC
Sbjct: 61 RSSHLGRYLSAEEDGRVACEAEQPGRDCRFLVLPQPDGRWVLRSEPHGRFFGGTEDQLSC 120
Query: 121 FATAVSPAELWTVHLAIHPQAHLLSVSRRRYVHLCPREDEMAADGDKPWGVDALLTLIFR 180
FATAVSPAELWTVHLAIHPQAHLLSVSRRRYVHLCPREDEMAADGDKPWGVDALLTLIFR
Sbjct: 121 FATAVSPAELWTVHLAIHPQAHLLSVSRRRYVHLCPREDEMAADGDKPWGVDALLTLIFR 180
Query: 181 SRRYCLKSCDSRYLRSDGRLVWEPEPRACYTLEFKAGKLAFKDCDGHYLAPVGPAGTLKA 240
SRRYCLKSCDSRYLRSDGRLVWEPEPRACYTLEFKAGKLAFKDCDGHYLAPVGPAGTLKA
Sbjct: 181 SRRYCLKSCDSRYLRSDGRLVWEPEPRACYTLEFKAGKLAFKDCDGHYLAPVGPAGTLKA 240
Query: 241 GRNTRPGKDELFDLEESHPQVVLVAANHRYVSVRQGVNVSANQDDELDHETFLMQIDQET 300
GRNTRPGKDELFDLEESHPQVVLVAANHRYVSVRQGVNVSANQDDELDHETFLMQIDQET
Sbjct: 241 GRNTRPGKDELFDLEESHPQVVLVAANHRYVSVRQGVNVSANQDDELDHETFLMQIDQET 300
Query: 301 KKCTFYSSTGGYWTLVTHGGIHATATQVSANTMFEMEWRGRRVALKASNGRYVCMKKNGQ 360
KKCTFYSSTGGYWTLVTHGGIHATATQVSANTMFEMEWRGRRVALKASNGRYVCMKKNGQ
Sbjct: 301 KKCTFYSSTGGYWTLVTHGGIHATATQVSANTMFEMEWRGRRVALKASNGRYVCMKKNGQ 360
Query: 361 LAAISDFVGKDEEFTLKLINRPILVLRGLDGFVCHHRGSNQLDTNRSVYDVFHLSFSDGA 420
LAAISDFVGKDEEFTLKLINRPILVLRGLDGFVCHHRGSNQLDTNRSVYDVFHLSFSDGA
Sbjct: 361 LAAISDFVGKDEEFTLKLINRPILVLRGLDGFVCHHRGSNQLDTNRSVYDVFHLSFSDGA 420
Query: 421 YRIRGRDGGFWYTGSHGSVCSDGERAEDFVFEFRERGRLAIRARSGKYLRGGASGLLRAD 480
YRIRGRDGGFWYTGSHGSVCSDGERAEDFVFEFRERGRLAIRARSGKYLRGGASGLLRAD
Sbjct: 421 YRIRGRDGGFWYTGSHGSVCSDGERAEDFVFEFRERGRLAIRARSGKYLRGGASGLLRAD 480
Query: 481 ADAPAGTALWEY 492
ADAPAGTALWEY
Sbjct: 481 ADAPAGTALWEY 492
>gi|116295251 fascin 2 isoform 2 [Homo sapiens]
Length = 516
Score = 1005 bits (2599), Expect = 0.0
Identities = 492/516 (95%), Positives = 492/516 (95%), Gaps = 24/516 (4%)
Query: 1 MPTNGLHQVLKIQFGLVNDTDRYLTAESFGFKVNASAPSLKRKQTWVLEPDPGQGTAVLL 60
MPTNGLHQVLKIQFGLVNDTDRYLTAESFGFKVNASAPSLKRKQTWVLEPDPGQGTAVLL
Sbjct: 1 MPTNGLHQVLKIQFGLVNDTDRYLTAESFGFKVNASAPSLKRKQTWVLEPDPGQGTAVLL 60
Query: 61 RSSHLGRYLSAEEDGRVACEAEQPGRDCRFLVLPQPDGRWVLRSEPHGRFFGGTEDQLSC 120
RSSHLGRYLSAEEDGRVACEAEQPGRDCRFLVLPQPDGRWVLRSEPHGRFFGGTEDQLSC
Sbjct: 61 RSSHLGRYLSAEEDGRVACEAEQPGRDCRFLVLPQPDGRWVLRSEPHGRFFGGTEDQLSC 120
Query: 121 FATAVSPAELWTVHLAIHPQAHLLSVSRRRYVHLCPREDEMAADGDKPWGVDALLTLIFR 180
FATAVSPAELWTVHLAIHPQAHLLSVSRRRYVHLCPREDEMAADGDKPWGVDALLTLIFR
Sbjct: 121 FATAVSPAELWTVHLAIHPQAHLLSVSRRRYVHLCPREDEMAADGDKPWGVDALLTLIFR 180
Query: 181 SRRYCLKSCDSRYLRSDGRLVWEPEPRACYTLEFKAGKLAFKDCDGHYLAPVGPAGTLKA 240
SRRYCLKSCDSRYLRSDGRLVWEPEPRACYTLEFKAGKLAFKDCDGHYLAPVGPAGTLKA
Sbjct: 181 SRRYCLKSCDSRYLRSDGRLVWEPEPRACYTLEFKAGKLAFKDCDGHYLAPVGPAGTLKA 240
Query: 241 GRNTRPGKDELFDLEESHPQVVLVAANHRYVSVRQGVNVSANQDDELDHETFLMQIDQET 300
GRNTRPGKDELFDLEESHPQVVLVAANHRYVSVRQGVNVSANQDDELDHETFLMQIDQET
Sbjct: 241 GRNTRPGKDELFDLEESHPQVVLVAANHRYVSVRQGVNVSANQDDELDHETFLMQIDQET 300
Query: 301 KKCTFYSSTGGYWTLVTHGGIHATATQVSANTMFEMEWRGRRVALKASNGRYVCMKKNGQ 360
KKCTFYSSTGGYWTLVTHGGIHATATQVSANTMFEMEWRGRRVALKASNGRYVCMKKNGQ
Sbjct: 301 KKCTFYSSTGGYWTLVTHGGIHATATQVSANTMFEMEWRGRRVALKASNGRYVCMKKNGQ 360
Query: 361 LAAISDFV------------------------GKDEEFTLKLINRPILVLRGLDGFVCHH 396
LAAISDFV GKDEEFTLKLINRPILVLRGLDGFVCHH
Sbjct: 361 LAAISDFVGPPPRPAWTGKVAGGAAQQTLSPPGKDEEFTLKLINRPILVLRGLDGFVCHH 420
Query: 397 RGSNQLDTNRSVYDVFHLSFSDGAYRIRGRDGGFWYTGSHGSVCSDGERAEDFVFEFRER 456
RGSNQLDTNRSVYDVFHLSFSDGAYRIRGRDGGFWYTGSHGSVCSDGERAEDFVFEFRER
Sbjct: 421 RGSNQLDTNRSVYDVFHLSFSDGAYRIRGRDGGFWYTGSHGSVCSDGERAEDFVFEFRER 480
Query: 457 GRLAIRARSGKYLRGGASGLLRADADAPAGTALWEY 492
GRLAIRARSGKYLRGGASGLLRADADAPAGTALWEY
Sbjct: 481 GRLAIRARSGKYLRGGASGLLRADADAPAGTALWEY 516
>gi|4507115 fascin 1 [Homo sapiens]
Length = 493
Score = 566 bits (1458), Expect = e-161
Identities = 275/494 (55%), Positives = 361/494 (73%), Gaps = 3/494 (0%)
Query: 1 MPTNGLHQVLKIQFGLVNDTDRYLTAESFGFKVNASAPSLKRKQTWVLEPDPGQ-GTAVL 59
M NG + ++IQFGL+N ++YLTAE+FGFKVNASA SLK+KQ W LE P + G+A +
Sbjct: 1 MTANGTAEAVQIQFGLINCGNKYLTAEAFGFKVNASASSLKKKQIWTLEQPPDEAGSAAV 60
Query: 60 LRSSHLGRYLSAEEDGRVACEAEQPGRDCRFLVLPQPDGRWVLRSEPHGRFFGGTEDQLS 119
SHLGRYL+A++DG V CE E PG DCRFL++ DGRW L+SE H R+FGGTED+LS
Sbjct: 61 CLRSHLGRYLAADKDGNVTCEREVPGPDCRFLIVAHDDGRWSLQSEAHRRYFGGTEDRLS 120
Query: 120 CFATAVSPAELWTVHLAIHPQAHLLSVSRRRYVHLCPRE-DEMAADGDKPWGVDALLTLI 178
CFA VSPAE W+VH+A+HPQ ++ SV+R+RY HL R DE+A D D PWGVD+L+TL
Sbjct: 121 CFAQTVSPAEKWSVHIAMHPQVNIYSVTRKRYAHLSARPADEIAVDRDVPWGVDSLITLA 180
Query: 179 FRSRRYCLKSCDSRYLRSDGRLVWEPEPRACYTLEFKAGKLAFKDCDGHYLAPVGPAGTL 238
F+ +RY +++ D R+LR DGRLV PEP YTLEF++GK+AF+DC+G YLAP GP+GTL
Sbjct: 181 FQDQRYSVQTADHRFLRHDGRLVARPEPATGYTLEFRSGKVAFRDCEGRYLAPSGPSGTL 240
Query: 239 KAGRNTRPGKDELFDLEESHPQVVLVAANHRYVSVRQGVNVSANQDDELDHETFLMQIDQ 298
KAG+ T+ GKDELF LE+S QVVL AAN R VS RQG+++SANQD+E D ETF ++ID+
Sbjct: 241 KAGKATKVGKDELFALEQSCAQVVLQAANERNVSTRQGMDLSANQDEETDQETFQLEIDR 300
Query: 299 ETKKCTFYSSTGGYWTLVTHGGIHATATQVSANTMFEMEWRGRRVALKASNGRYVCMKKN 358
+TKKC F + TG YWTL GG+ +TA+ +A+ F++EWR RR+ L+ASNG++V KKN
Sbjct: 301 DTKKCAFRTHTGKYWTLTATGGVQSTASSKNASCYFDIEWRDRRITLRASNGKFVTSKKN 360
Query: 359 GQLAAISDFVGKDEEFTLKLINRPILVLRGLDGFVCHHRGSNQLDTNRSVYDVFHLSFSD 418
GQLAA + G E F +KLINRPI+V RG GF+ + + LD NRS YDVF L F+D
Sbjct: 361 GQLAASVETAGDSELFLMKLINRPIIVFRGEHGFIGCRKVTGTLDANRSSYDVFQLEFND 420
Query: 419 GAYRIRGRDGGFWYTGSHGSVCSDGERAEDFVFEFRERGRLAIRARSGKYLRGGASGLLR 478
GAY I+ G +W GS +V S G+ DF FEF + ++AI+ G+YL+G +G+L+
Sbjct: 421 GAYNIKDSTGKYWTVGSDSAVTSSGDTPVDFFFEFCDYNKVAIKV-GGRYLKGDHAGVLK 479
Query: 479 ADADAPAGTALWEY 492
A A+ +LWEY
Sbjct: 480 ASAETVDPASLWEY 493
>gi|9966791 fascin 3 [Homo sapiens]
Length = 498
Score = 171 bits (432), Expect = 2e-42
Identities = 136/484 (28%), Positives = 209/484 (43%), Gaps = 4/484 (0%)
Query: 12 IQFGLVNDTDRYLTAESFGFKVNASAPSLKRKQTW-VLEPDPGQGTAVLLRSSHLGRYLS 70
++ GL++ YLT E+ V A+A SL R+QTW +L + + AV+ S G YL
Sbjct: 16 LRVGLISWAGTYLTFEACKNTVTATAKSLGRRQTWEILVSNEHETQAVVRLKSVQGLYLL 75
Query: 71 AEEDGRVACEAEQPGRDCRFLVLPQPDGRWVLRSEPHGRFFGGTEDQLSCFATAVSPAEL 130
E DG V + FL+ + +W L+ GR+ + C + +S +
Sbjct: 76 CECDGTVCYGRPRTSHHGCFLLRFHRNSKWTLQCLISGRYLESNGKDVFCTSHVLSAYHM 135
Query: 131 WTVHLAIHPQAHLLSVSRRRYVHLCPREDEMAADGDKPWGVDALLTLIFRSRRYCLKSCD 190
WT A+H L S R Y P + D P + L FR Y L++
Sbjct: 136 WTPRPALHVHVILYSPIHRCYARADPTMGRIWVDAAVPCLEECGFLLHFRDGCYHLETST 195
Query: 191 SRYLRSDGRLVWEPEPRACYTLEFKAGKL-AFKDCDGHYLAPVGPAGTLKAGRNTRPGKD 249
+L RL +P + + ++ + G L A D +G L P G L G N G +
Sbjct: 196 HHFLSHVDRLFSQPSSQTAFHMQVRPGGLVALCDGEGGMLYPQGTHLLLGMGCNPMRG-E 254
Query: 250 ELFDLEESHPQVVLVAANHRYVSVRQGVNVSANQDDELDHETFLMQIDQETKKCTFYSST 309
E F L+ V L + R++SV V A + F + D E+ S+
Sbjct: 255 EWFILQHCPTWVSLRSKTGRFISVIYDGEVRAASERLNRMSLFQFECDSESPTVQLRSAN 314
Query: 310 GGYWTLVTHGGIHATATQVSANTMFEMEWRGRRVALKASNGRYVCMKKNGQLAAISDFVG 369
G Y + H + A + ++T F M W R+ L++ GR++ + N L A G
Sbjct: 315 GYYLSQRRHRAVMADGHPLESDTFFRMHWNCGRIILQSCRGRFLGIAPNSLLMANVILPG 374
Query: 370 KDEEFTLKLINRPILVLRGLDGFVCHHRGSNQLDTNRSVYDVFH-LSFSDGAYRIRGRDG 428
+EEF + NR LVLRG G+V G + + N+ D H L G Y + + G
Sbjct: 375 PNEEFGILFANRSFLVLRGRYGYVGSSSGHDLIQCNQDQPDRIHLLPCRPGIYHFQAQGG 434
Query: 429 GFWYTGSHGSVCSDGERAEDFVFEFRERGRLAIRARSGKYLRGGASGLLRADADAPAGTA 488
FW S G+ G+ A +F E + L + A +G Y+R SG L AD++
Sbjct: 435 SFWSITSFGTFRPWGKFALNFCIELQGSNLLTVLAPNGFYMRADQSGTLLADSEDITREC 494
Query: 489 LWEY 492
+WE+
Sbjct: 495 IWEF 498
>gi|4503693 fibroblast growth factor 17 precursor [Homo sapiens]
Length = 216
Score = 37.0 bits (84), Expect = 0.041
Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 11/112 (9%)
Query: 267 NHRYVSVRQGVNVSANQDDELDHETFLMQIDQETKKCTFYSSTGGYWTLVTHGGIHATAT 326
NH + Q V D+L ++ ++ YS T G VT I ATA
Sbjct: 27 NHPSPNFNQYVRDQGAMTDQLSR--------RQIREYQLYSRTSGKHVQVTGRRISATAE 78
Query: 327 QVS--ANTMFEMEWRGRRVALK-ASNGRYVCMKKNGQLAAISDFVGKDEEFT 375
+ A + E + G RV +K A + +Y+CM K G+L KD FT
Sbjct: 79 DGNKFAKLIVETDTFGSRVRIKGAESEKYICMNKRGKLIGKPSGKSKDCVFT 130
>gi|15147350 fibroblast growth factor 8 isoform A precursor [Homo
sapiens]
Length = 204
Score = 35.0 bits (79), Expect = 0.16
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 306 YSSTGG-YWTLVTHGGIHATATQVS--ANTMFEMEWRGRRVALK-ASNGRYVCMKKNGQL 361
YS T G + ++ + I+A A A + E + G RV ++ A G Y+CM K G+L
Sbjct: 46 YSRTSGKHVQVLANKRINAMAEDGDPFAKLIVETDTFGSRVRVRGAETGLYICMNKKGKL 105
Query: 362 AAISDFVGKDEEFT 375
A S+ GKD FT
Sbjct: 106 IAKSNGKGKDCVFT 119
>gi|5174439 fibroblast growth factor 8 isoform B precursor [Homo
sapiens]
Length = 215
Score = 35.0 bits (79), Expect = 0.16
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 306 YSSTGG-YWTLVTHGGIHATATQVS--ANTMFEMEWRGRRVALK-ASNGRYVCMKKNGQL 361
YS T G + ++ + I+A A A + E + G RV ++ A G Y+CM K G+L
Sbjct: 57 YSRTSGKHVQVLANKRINAMAEDGDPFAKLIVETDTFGSRVRVRGAETGLYICMNKKGKL 116
Query: 362 AAISDFVGKDEEFT 375
A S+ GKD FT
Sbjct: 117 IAKSNGKGKDCVFT 130
>gi|15147348 fibroblast growth factor 8 isoform E precursor [Homo
sapiens]
Length = 233
Score = 35.0 bits (79), Expect = 0.16
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 306 YSSTGG-YWTLVTHGGIHATATQVS--ANTMFEMEWRGRRVALK-ASNGRYVCMKKNGQL 361
YS T G + ++ + I+A A A + E + G RV ++ A G Y+CM K G+L
Sbjct: 75 YSRTSGKHVQVLANKRINAMAEDGDPFAKLIVETDTFGSRVRVRGAETGLYICMNKKGKL 134
Query: 362 AAISDFVGKDEEFT 375
A S+ GKD FT
Sbjct: 135 IAKSNGKGKDCVFT 148
>gi|15147346 fibroblast growth factor 8 isoform F precursor [Homo
sapiens]
Length = 244
Score = 35.0 bits (79), Expect = 0.16
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 306 YSSTGG-YWTLVTHGGIHATATQVS--ANTMFEMEWRGRRVALK-ASNGRYVCMKKNGQL 361
YS T G + ++ + I+A A A + E + G RV ++ A G Y+CM K G+L
Sbjct: 86 YSRTSGKHVQVLANKRINAMAEDGDPFAKLIVETDTFGSRVRVRGAETGLYICMNKKGKL 145
Query: 362 AAISDFVGKDEEFT 375
A S+ GKD FT
Sbjct: 146 IAKSNGKGKDCVFT 159
>gi|222352122 hypothetical protein LOC284297 [Homo sapiens]
Length = 1573
Score = 32.3 bits (72), Expect = 1.0
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 411 VFHLSFSDGAYRIRGRDGGFWYTGSHGSVCSDGERAEDFVFEFRERGRLAIRARSGKYLR 470
+F + +DG R GR W+ G G+VC D D E G +R R GK
Sbjct: 769 LFRVRLADGPNRCAGRLE-VWHAGRWGTVCDDNWDLRDATVACWELGCGKVRPRVGKTHY 827
Query: 471 GGASGLLRAD 480
G +G + D
Sbjct: 828 GPGTGPIWLD 837
>gi|169169847 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 32.3 bits (72), Expect = 1.0
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 422 RIRGRDGGFWYTGSHGSVCSDGERAEDFVFEFRERGRLAIRARSGKYLRGGASGLLRADA 481
R G G W G G + + GER F GR+ +R + +L GA+GL A A
Sbjct: 66 RASGMRVGIWAAG--GGLAAAGERNSVRAVSFSS-GRVGVREEAAGHLAVGAAGLTGAHA 122
Query: 482 DAPAG 486
D G
Sbjct: 123 DLAVG 127
>gi|169168886 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 32.3 bits (72), Expect = 1.0
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 422 RIRGRDGGFWYTGSHGSVCSDGERAEDFVFEFRERGRLAIRARSGKYLRGGASGLLRADA 481
R G G W G G + + GER F GR+ +R + +L GA+GL A A
Sbjct: 66 RASGMRVGIWAAG--GGLAAAGERNSVRAVSFSS-GRVGVREEAAGHLAVGAAGLTGAHA 122
Query: 482 DAPAG 486
D G
Sbjct: 123 DLAVG 127
>gi|4507587 tumor necrosis factor receptor superfamily, member 7
precursor [Homo sapiens]
Length = 260
Score = 32.3 bits (72), Expect = 1.0
Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 13/83 (15%)
Query: 168 PWGVDALLTLIFRSRRYCLKSCDSRYLRSDGRLVWEPEPRACYTLEFKAGKLAFKDCDGH 227
PW + L TL+ S KSC R+ + G+L C E G KDCD H
Sbjct: 6 PWWLCVLGTLVGLSATPAPKSCPERHYWAQGKL-------CCQMCE--PGTFLVKDCDQH 56
Query: 228 YLA----PVGPAGTLKAGRNTRP 246
A P P + +TRP
Sbjct: 57 RKAAQCDPCIPGVSFSPDHHTRP 79
>gi|4826726 fibroblast growth factor 19 precursor [Homo sapiens]
Length = 216
Score = 32.0 bits (71), Expect = 1.3
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 58 VLLRSSHLGRYLSAEEDGRVACEAEQPGRDCRFLVLPQPDGRWVLRSEPH 107
V ++ H RYL DG++ + DC F +PDG V RSE H
Sbjct: 90 VAIKGVHSVRYLCMGADGKMQGLLQYSEEDCAFEEEIRPDGYNVYRSEKH 139
>gi|194097386 gamma-aminobutyric acid (GABA) receptor, rho 1 [Homo
sapiens]
Length = 479
Score = 32.0 bits (71), Expect = 1.3
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 278 NVSANQDDELDHETFLMQIDQETKKCTFYSSTGGY------WTLVTHGGIHATATQVSAN 331
N S D+ + FL+Q T K FYSSTG Y +TL H T A
Sbjct: 234 NDSLKTDERISLSQFLIQEFHTTTKLAFYSSTGWYNRLYINFTLRRHIFFFLLQTYFPAT 293
Query: 332 TMFEMEW 338
M + W
Sbjct: 294 LMVMLSW 300
>gi|239742988 PREDICTED: hypothetical protein [Homo sapiens]
Length = 470
Score = 30.8 bits (68), Expect = 2.9
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 422 RIRGRDGGFWYTGSHGSVCSDGERAEDFVFEFRERGRLAIRARSGKYLRGGASGLLRADA 481
R G G W G G + + GER F GR+ +R + +L GA+GL A A
Sbjct: 264 RASGMRVGIWAAG--GGLAAAGERNSVRAVSFSS-GRVGVREEAAGHLAVGAAGLTGAHA 320
Query: 482 D 482
D
Sbjct: 321 D 321
>gi|153266866 gamma-aminobutyric acid (GABA) receptor, rho 2
precursor [Homo sapiens]
Length = 490
Score = 30.4 bits (67), Expect = 3.8
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 280 SANQDDELDHETFLMQIDQETKKCTFYSSTGGY------WTLVTHGGIHATATQVSANTM 333
S D+++ FL+Q T + FYSSTG Y +TL H T A M
Sbjct: 241 SLKTDEKISLSQFLIQKFHTTSRLAFYSSTGWYNRLYINFTLRRHIFFFLLQTYFPATLM 300
Query: 334 FEMEW 338
+ W
Sbjct: 301 VMLSW 305
>gi|4557445 regulator of chromosome condensation and BTB domain
containing protein 2 [Homo sapiens]
Length = 551
Score = 30.0 bits (66), Expect = 5.0
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 106 PHGRFFGGTEDQLSCFATAVSPAELWTVHLAIHPQAHL 143
PH F T+D +CFAT PA W + L++ P HL
Sbjct: 345 PHLTHFSCTDDVFACFAT---PAVTWRL-LSVEPDDHL 378
>gi|112789562 interferon, gamma-inducible protein 16 [Homo sapiens]
Length = 729
Score = 29.3 bits (64), Expect = 8.5
Identities = 36/156 (23%), Positives = 71/156 (45%), Gaps = 26/156 (16%)
Query: 322 HAT-ATQVS------ANTMFEMEWRGRRVALKASNGRYVCMKKNGQLAAISDFVGKDEEF 374
HAT ATQ NT + ++ G+++ + + Y + + + + +S+ G ++ F
Sbjct: 230 HATVATQTQFFHVKVLNTSLKEKFNGKKIIIISDYLEYDSLLEVNEESTVSE-AGPNQTF 288
Query: 375 TL--KLINRPILVLRGLDGFVCHHRGSNQLDTNRSVYDVFHL-----SFSDGAYRIRGRD 427
+ K+INR L+ +D + H + S + VY VF L + Y I+
Sbjct: 289 EVPNKIINRAKETLK-ID--ILHKQASGNI-----VYGVFMLHKKTVNQKTTIYEIQDDR 340
Query: 428 GGFWYTGS---HGSVCSDGERAEDFVFEFRERGRLA 460
G G+ H C +G++ + F F R++ +++
Sbjct: 341 GKMDVVGTGQCHNIPCEEGDKLQLFCFRLRKKNQMS 376
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 29.3 bits (64), Expect = 8.5
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 15/73 (20%)
Query: 155 CPREDEMAAD-GDKPWGVDALLTLIFRSRRYCLKSCDSRYLRSDGRLVWEPEPRACYTLE 213
CP + EMAA G W + +LTL+ + + S++ ++ + WE
Sbjct: 7 CPTDLEMAAPKGQDRWSQEDMLTLLECMKNNLPSNDSSKFKTTESHMDWE---------- 56
Query: 214 FKAGKLAFKDCDG 226
K+AFKD G
Sbjct: 57 ----KVAFKDFSG 65
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 29.3 bits (64), Expect = 8.5
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 15/73 (20%)
Query: 155 CPREDEMAAD-GDKPWGVDALLTLIFRSRRYCLKSCDSRYLRSDGRLVWEPEPRACYTLE 213
CP + EMAA G W + +LTL+ + + S++ ++ + WE
Sbjct: 7 CPTDLEMAAPKGQDRWSQEDMLTLLECMKNNLPSNDSSKFKTTESHMDWE---------- 56
Query: 214 FKAGKLAFKDCDG 226
K+AFKD G
Sbjct: 57 ----KVAFKDFSG 65
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 29.3 bits (64), Expect = 8.5
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 15/73 (20%)
Query: 155 CPREDEMAAD-GDKPWGVDALLTLIFRSRRYCLKSCDSRYLRSDGRLVWEPEPRACYTLE 213
CP + EMAA G W + +LTL+ + + S++ ++ + WE
Sbjct: 7 CPTDLEMAAPKGQDRWSQEDMLTLLECMKNNLPSNDSSKFKTTESHMDWE---------- 56
Query: 214 FKAGKLAFKDCDG 226
K+AFKD G
Sbjct: 57 ----KVAFKDFSG 65
>gi|25306287 mitochondrial elongation factor G2 isoform 2 [Homo
sapiens]
Length = 732
Score = 29.3 bits (64), Expect = 8.5
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 21/96 (21%)
Query: 362 AAISDFVGKDEEFTLKLINRPILVLRGLDGFVCHHRGSNQLDTNRSVYDVFHLSFSDGAY 421
+++ +G D + +IN PI +R + G + H T R +Y +S
Sbjct: 46 SSLPGLIGNDIKSLHSIINPPIAKIRNI-GIMAHIDAGKTTTTERILY------YSG--- 95
Query: 422 RIRGRDGGFWYTGSHGSVCSDGERAEDFVFEFRERG 457
YT S G V DG+ DF+ + RERG
Sbjct: 96 ----------YTRSLGDV-DDGDTVTDFMAQERERG 120
>gi|25306283 mitochondrial elongation factor G2 isoform 3 [Homo
sapiens]
Length = 513
Score = 29.3 bits (64), Expect = 8.5
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 21/96 (21%)
Query: 362 AAISDFVGKDEEFTLKLINRPILVLRGLDGFVCHHRGSNQLDTNRSVYDVFHLSFSDGAY 421
+++ +G D + +IN PI +R + G + H T R +Y +S
Sbjct: 46 SSLPGLIGNDIKSLHSIINPPIAKIRNI-GIMAHIDAGKTTTTERILY------YSG--- 95
Query: 422 RIRGRDGGFWYTGSHGSVCSDGERAEDFVFEFRERG 457
YT S G V DG+ DF+ + RERG
Sbjct: 96 ----------YTRSLGDV-DDGDTVTDFMAQERERG 120
>gi|19923640 mitochondrial elongation factor G2 isoform 1 [Homo
sapiens]
Length = 779
Score = 29.3 bits (64), Expect = 8.5
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 21/96 (21%)
Query: 362 AAISDFVGKDEEFTLKLINRPILVLRGLDGFVCHHRGSNQLDTNRSVYDVFHLSFSDGAY 421
+++ +G D + +IN PI +R + G + H T R +Y +S
Sbjct: 46 SSLPGLIGNDIKSLHSIINPPIAKIRNI-GIMAHIDAGKTTTTERILY------YSG--- 95
Query: 422 RIRGRDGGFWYTGSHGSVCSDGERAEDFVFEFRERG 457
YT S G V DG+ DF+ + RERG
Sbjct: 96 ----------YTRSLGDV-DDGDTVTDFMAQERERG 120
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,413,172
Number of Sequences: 37866
Number of extensions: 982038
Number of successful extensions: 1854
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1807
Number of HSP's gapped (non-prelim): 34
length of query: 492
length of database: 18,247,518
effective HSP length: 106
effective length of query: 386
effective length of database: 14,233,722
effective search space: 5494216692
effective search space used: 5494216692
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.