Guide to the Human Genome
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Name: TSPAN33 Sequence: fasta or formatted (283aa) NCBI GI: 30425534
Description:

tetraspanin 33

Referenced in:

Integrins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         23           2
 C cysteine            4.6         13           2
 D aspartate           4.6         13           2
 E glutamate           2.8          8           2
 F phenylalanine       6.0         17           3
 G glycine             6.4         18           2
 H histidine           1.4          4           1
 I isoleucine          7.1         20           2
 K lysine              3.9         11           2
 L leucine            13.4         38           2
 M methionine          3.2          9           1
 N asparagine          4.9         14           2
 P proline             3.5         10           1
 Q glutamine           5.3         15           2
 R arginine            3.5         10           2
 S serine              6.4         18           1
 T threonine           2.1          6           1
 V valine              7.8         22           2
 W tryptophan          1.4          4           1
 Y tyrosine            3.5         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tetraspanin 33 
TSPAN17               0.379   transmembrane 4 superfamily member 17 isoform b [Hom...
TSPAN17               0.372   transmembrane 4 superfamily member 17 isoform a [Hom...
TSPAN5                0.370   transmembrane 4 superfamily member 9 
TSPAN17               0.363   transmembrane 4 superfamily member 17 isoform c [Hom...
TSPAN14               0.358   tetraspanin 14 isoform 1 
TSPAN15               0.310   transmembrane 4 superfamily member 15 
TSPAN10               0.236   tetraspanin 10 
CD63                  0.192   CD63 antigen isoform A 
CD63                  0.183   CD63 antigen isoform B 
TSPAN7                0.151   tetraspanin 7 
TSPAN4                0.151   tetraspanin 4 isoform a 
TSPAN4                0.151   tetraspanin 4 isoform a 
TSPAN4                0.151   tetraspanin 4 isoform a 
TSPAN4                0.151   tetraspanin 4 isoform a 
TSPAN4                0.151   tetraspanin 4 isoform a 
TSPAN4                0.151   tetraspanin 4 isoform a 
TSPAN9                0.151   tetraspanin 9 
TSPAN14               0.149   tetraspanin 14 isoform 2 
TSPAN8                0.149   transmembrane 4 superfamily member 3 
CD151                 0.145   CD151 antigen 
CD151                 0.145   CD151 antigen 
CD151                 0.145   CD151 antigen 
CD151                 0.145   CD151 antigen 
CD82                  0.143   CD82 antigen isoform 1 
TSPAN6                0.138   transmembrane 4 superfamily member 6 
TSPAN11               0.136   tetraspanin 11 
CD53                  0.125   CD53 antigen 
TSPAN3                0.125   transmembrane 4 superfamily member 8 isoform 1 
CD53                  0.125   CD53 antigen 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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