Guide to the Human Genome
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Name: CD82 Sequence: fasta or formatted (242aa) NCBI GI: 67782354
Description:

CD82 antigen isoform 2

Referenced in:

Integrins

Other entries for this name:
alt prot [267aa] CD82 antigen isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         12           1
 C cysteine            4.5         11           2
 D aspartate           3.7          9           1
 E glutamate           6.6         16           2
 F phenylalanine       4.5         11           2
 G glycine             9.9         24           2
 H histidine           1.2          3           1
 I isoleucine          6.2         15           2
 K lysine              4.1         10           1
 L leucine            10.3         25           2
 M methionine          3.3          8           1
 N asparagine          4.1         10           1
 P proline             2.5          6           1
 Q glutamine           3.7          9           1
 R arginine            3.3          8           1
 S serine              7.9         19           4
 T threonine           2.9          7           1
 V valine              9.9         24           1
 W tryptophan          2.5          6           1
 Y tyrosine            3.7          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CD82 antigen isoform 2 
CD82                  0.971   CD82 antigen isoform 1 
CD37                  0.267   CD37 antigen isoform A 
TSPAN9                0.185   tetraspanin 9 
TSPAN19               0.168   tetraspanin 19 
TSPAN5                0.168   transmembrane 4 superfamily member 9 
TSPAN4                0.164   tetraspanin 4 isoform a 
TSPAN4                0.164   tetraspanin 4 isoform a 
TSPAN4                0.164   tetraspanin 4 isoform a 
TSPAN4                0.164   tetraspanin 4 isoform a 
TSPAN4                0.164   tetraspanin 4 isoform a 
TSPAN4                0.164   tetraspanin 4 isoform a 
CD151                 0.160   CD151 antigen 
CD151                 0.160   CD151 antigen 
CD151                 0.160   CD151 antigen 
CD151                 0.160   CD151 antigen 
TSPAN8                0.158   transmembrane 4 superfamily member 3 
TSPAN11               0.156   tetraspanin 11 
TSPAN17               0.156   transmembrane 4 superfamily member 17 isoform a [Hom...
TSPAN17               0.152   transmembrane 4 superfamily member 17 isoform c [Hom...
TSPAN17               0.152   transmembrane 4 superfamily member 17 isoform b [Hom...
CD53                  0.149   CD53 antigen 
CD53                  0.149   CD53 antigen 
CD37                  0.147   CD37 antigen isoform B 
TSPAN7                0.145   tetraspanin 7 
TSPAN3                0.145   transmembrane 4 superfamily member 8 isoform 2 [Homo...
TSPAN33               0.128   tetraspanin 33 
CD9                   0.128   CD9 antigen 
TSPAN1                0.126   tetraspan 1 
TSPAN14               0.124   tetraspanin 14 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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