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Search of human proteins with 68509932
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|68509932 myelin basic protein isoform 4 [Homo sapiens]
(160 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|68509932 myelin basic protein isoform 4 [Homo sapiens] 337 3e-93
gi|68509940 Golli-mbp isoform 1 [Homo sapiens] 328 1e-90
gi|68509928 myelin basic protein isoform 3 [Homo sapiens] 328 1e-90
gi|4505123 myelin basic protein isoform 2 [Homo sapiens] 322 7e-89
gi|68509930 myelin basic protein isoform 1 [Homo sapiens] 314 2e-86
gi|68509938 Golli-mbp isoform 2 [Homo sapiens] 126 9e-30
gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3... 35 0.036
gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1... 35 0.036
gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4... 35 0.036
gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2 [... 35 0.036
gi|60097902 filaggrin [Homo sapiens] 33 0.14
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 33 0.14
gi|148806908 fibronectin type III domain containing 1 [Homo sapi... 32 0.30
gi|21618325 forkhead box E1 [Homo sapiens] 30 0.68
gi|169216092 PREDICTED: similar to hCG2038853 [Homo sapiens] 30 0.88
gi|169215887 PREDICTED: similar to hCG2038853 [Homo sapiens] 30 0.88
gi|169215666 PREDICTED: similar to hCG2038853 [Homo sapiens] 30 0.88
gi|194097354 G1 to S phase transition 1 isoform 2 [Homo sapiens] 30 1.2
gi|194018520 G1 to S phase transition 1 isoform 1 [Homo sapiens] 30 1.2
gi|19920317 cytoskeleton-associated protein 4 [Homo sapiens] 29 1.5
gi|7662018 PHD finger protein 3 [Homo sapiens] 29 1.5
gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens] 29 1.5
gi|7662238 apoptotic chromatin condensation inducer 1 [Homo sapi... 29 2.0
gi|61743948 abl-interactor 1 isoform d [Homo sapiens] 29 2.0
gi|61743946 abl-interactor 1 isoform c [Homo sapiens] 29 2.0
gi|61743944 abl-interactor 1 isoform b [Homo sapiens] 29 2.0
gi|169646441 GDP dissociation inhibitor 2 isoform 2 [Homo sapiens] 28 2.6
gi|6598323 GDP dissociation inhibitor 2 isoform 1 [Homo sapiens] 28 2.6
gi|56788370 pleckstrin and Sec7 domain containing 4 [Homo sapiens] 28 2.6
gi|57864582 hornerin [Homo sapiens] 28 3.4
>gi|68509932 myelin basic protein isoform 4 [Homo sapiens]
Length = 160
Score = 337 bits (863), Expect = 3e-93
Identities = 160/160 (100%), Positives = 160/160 (100%)
Query: 1 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKD 60
MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKD
Sbjct: 1 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKD 60
Query: 61 SHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGKGAEGQRPGFGYGGR 120
SHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGKGAEGQRPGFGYGGR
Sbjct: 61 SHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGKGAEGQRPGFGYGGR 120
Query: 121 ASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSGSPMARR 160
ASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSGSPMARR
Sbjct: 121 ASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSGSPMARR 160
>gi|68509940 Golli-mbp isoform 1 [Homo sapiens]
Length = 304
Score = 328 bits (841), Expect = 1e-90
Identities = 160/171 (93%), Positives = 160/171 (93%), Gaps = 11/171 (6%)
Query: 1 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKD 60
MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKD
Sbjct: 134 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKD 193
Query: 61 SHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGK-----------GAE 109
SHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGK GAE
Sbjct: 194 SHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGKGRGLSLSRFSWGAE 253
Query: 110 GQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSGSPMARR 160
GQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSGSPMARR
Sbjct: 254 GQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSGSPMARR 304
>gi|68509928 myelin basic protein isoform 3 [Homo sapiens]
Length = 171
Score = 328 bits (841), Expect = 1e-90
Identities = 160/171 (93%), Positives = 160/171 (93%), Gaps = 11/171 (6%)
Query: 1 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKD 60
MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKD
Sbjct: 1 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKD 60
Query: 61 SHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGK-----------GAE 109
SHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGK GAE
Sbjct: 61 SHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGKGRGLSLSRFSWGAE 120
Query: 110 GQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSGSPMARR 160
GQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSGSPMARR
Sbjct: 121 GQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSGSPMARR 171
>gi|4505123 myelin basic protein isoform 2 [Homo sapiens]
Length = 186
Score = 322 bits (826), Expect = 7e-89
Identities = 160/186 (86%), Positives = 160/186 (86%), Gaps = 26/186 (13%)
Query: 1 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGK- 59
MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGK
Sbjct: 1 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV 60
Query: 60 -------------------------DSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI 94
DSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI
Sbjct: 61 PWLKPGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI 120
Query: 95 VTPRTPPPSQGKGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSG 154
VTPRTPPPSQGKGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSG
Sbjct: 121 VTPRTPPPSQGKGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSG 180
Query: 155 SPMARR 160
SPMARR
Sbjct: 181 SPMARR 186
>gi|68509930 myelin basic protein isoform 1 [Homo sapiens]
Length = 197
Score = 314 bits (804), Expect = 2e-86
Identities = 160/197 (81%), Positives = 160/197 (81%), Gaps = 37/197 (18%)
Query: 1 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSG-- 58
MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSG
Sbjct: 1 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV 60
Query: 59 ------------------------KDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI 94
KDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI
Sbjct: 61 PWLKPGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI 120
Query: 95 VTPRTPPPSQGK-----------GAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKI 143
VTPRTPPPSQGK GAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKI
Sbjct: 121 VTPRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKI 180
Query: 144 FKLGGRDSRSGSPMARR 160
FKLGGRDSRSGSPMARR
Sbjct: 181 FKLGGRDSRSGSPMARR 197
>gi|68509938 Golli-mbp isoform 2 [Homo sapiens]
Length = 197
Score = 126 bits (316), Expect = 9e-30
Identities = 60/61 (98%), Positives = 60/61 (98%)
Query: 1 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKD 60
MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGK
Sbjct: 134 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV 193
Query: 61 S 61
S
Sbjct: 194 S 194
>gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3
[Homo sapiens]
Length = 535
Score = 34.7 bits (78), Expect = 0.036
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 97 PRTPPPSQGKGAEGQRPGFGYGGRASDYKSAHKGFKGVD 135
PR PPP +G+G G R G+GY Y+ + + G D
Sbjct: 342 PRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYGYD 380
Score = 26.6 bits (57), Expect = 9.8
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 100 PPPSQGKGAEGQRPGFGYGGRASDY--KSAHKGFKGVDAQGTLSKIFKLGGRDSRSGSPM 157
PPP +G+GA R GY R + +G +G AQ + + G R +R G+
Sbjct: 414 PPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSR-GSRGNRGGNVG 472
Query: 158 ARR 160
+R
Sbjct: 473 GKR 475
>gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1
[Homo sapiens]
Length = 636
Score = 34.7 bits (78), Expect = 0.036
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 97 PRTPPPSQGKGAEGQRPGFGYGGRASDYKSAHKGFKGVD 135
PR PPP +G+G G R G+GY Y+ + + G D
Sbjct: 443 PRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYGYD 481
Score = 26.6 bits (57), Expect = 9.8
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 100 PPPSQGKGAEGQRPGFGYGGRASDY--KSAHKGFKGVDAQGTLSKIFKLGGRDSRSGSPM 157
PPP +G+GA R GY R + +G +G AQ + + G R +R G+
Sbjct: 515 PPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSR-GSRGNRGGNVG 573
Query: 158 ARR 160
+R
Sbjct: 574 GKR 576
>gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4
[Homo sapiens]
Length = 532
Score = 34.7 bits (78), Expect = 0.036
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 97 PRTPPPSQGKGAEGQRPGFGYGGRASDYKSAHKGFKGVD 135
PR PPP +G+G G R G+GY Y+ + + G D
Sbjct: 339 PRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYGYD 377
Score = 26.6 bits (57), Expect = 9.8
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 100 PPPSQGKGAEGQRPGFGYGGRASDY--KSAHKGFKGVDAQGTLSKIFKLGGRDSRSGSPM 157
PPP +G+GA R GY R + +G +G AQ + + G R +R G+
Sbjct: 411 PPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSR-GSRGNRGGNVG 469
Query: 158 ARR 160
+R
Sbjct: 470 GKR 472
>gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2
[Homo sapiens]
Length = 633
Score = 34.7 bits (78), Expect = 0.036
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 97 PRTPPPSQGKGAEGQRPGFGYGGRASDYKSAHKGFKGVD 135
PR PPP +G+G G R G+GY Y+ + + G D
Sbjct: 440 PRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYGYD 478
Score = 26.6 bits (57), Expect = 9.8
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 100 PPPSQGKGAEGQRPGFGYGGRASDY--KSAHKGFKGVDAQGTLSKIFKLGGRDSRSGSPM 157
PPP +G+GA R GY R + +G +G AQ + + G R +R G+
Sbjct: 512 PPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSR-GSRGNRGGNVG 570
Query: 158 ARR 160
+R
Sbjct: 571 GKR 573
>gi|60097902 filaggrin [Homo sapiens]
Length = 4061
Score = 32.7 bits (73), Expect = 0.14
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 3 SQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKDSH 62
++ P +RHGS++ +A + H+ G R + + DS R G + G +DS
Sbjct: 1349 ARSSPGERHGSRHQQSADSSRHS--GIGHRQASSAVRDSGHRGSSGSQVTNSEGHSEDSD 1406
Query: 63 HPARTAHYGSLP-QKSH 78
+ +AH + P Q+SH
Sbjct: 1407 TQSVSAHGQAGPHQQSH 1423
Score = 31.6 bits (70), Expect = 0.30
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 3 SQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRF-FGGDRGAPKRGSGKDS 61
++ P +RHGS++ +A D +RH +PR + + + G + G + + G ++S
Sbjct: 1025 ARSSPGERHGSRHQQSA---DSSRHSGIPRRQASSAVRDSGHWGSSGSQASDSEGHSEES 1081
Query: 62 HHPARTAHYGSLP-QKSH 78
+ + H P Q+SH
Sbjct: 1082 DTQSVSGHGQDGPHQQSH 1099
Score = 30.8 bits (68), Expect = 0.52
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 3 SQKRPSQRHGSKYLATASTMDHARHGFLPR-HRDTGILDSIGRFFGGDRGAPKRGSGKDS 61
++ P +RHGS++ +A D +RH +PR + + DS G + + G ++S
Sbjct: 3294 ARSSPGERHGSRHQQSA---DSSRHSGIPRGQASSAVRDSRHWGSSGSQASDSEGHSEES 3350
Query: 62 HHPARTAHYGSLP-QKSH 78
+ + H + P Q+SH
Sbjct: 3351 DTQSVSGHGQAGPHQQSH 3368
Score = 28.1 bits (61), Expect = 3.4
Identities = 41/175 (23%), Positives = 69/175 (39%), Gaps = 28/175 (16%)
Query: 4 QKRPSQRH-GSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKDSH 62
Q RH GS++ +S D +RH + + + +G S + + + +G +DS
Sbjct: 576 QSGDGTRHSGSRHHEASSQADSSRHSQVGQGQSSGPRTSRNQGSSVSQDSDSQGHSEDSE 635
Query: 63 HPARTA---HYGSLPQKS-----HGRTQDENPVVH-----FFKNIVTPRTPPPSQGKGAE 109
+ +A H+GS ++S H R+ E+ H + T T S G+ A
Sbjct: 636 RWSGSASRNHHGSAQEQSRDGSRHPRSHHEDRAGHGHSADSSRKSGTRHTQNSSSGQAAS 695
Query: 110 ---------GQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSGS 155
G+R G + +++D S H G G S + G SGS
Sbjct: 696 SHEQARSSAGERHGSRHQLQSAD-SSRHSG----TGHGQASSAVRDSGHRGSSGS 745
Score = 28.1 bits (61), Expect = 3.4
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 8 SQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKDSHHPART 67
S+ GS + +S D +RH + + + +G S R + + G +DS + +
Sbjct: 2203 SRHSGSHHHEASSWADSSRHSLVGQGQSSGPRTSRPRGSSVSQDSDSEGHSEDSERRSGS 2262
Query: 68 A---HYGSLPQKS-----HGRTQDENPVVH 89
A H+GS ++S H R+ E+ H
Sbjct: 2263 ASRNHHGSAQEQSRDGSRHPRSHHEDRAGH 2292
Score = 28.1 bits (61), Expect = 3.4
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 9 QRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKDSHHPARTA 68
+RHGS + +A + H+ G + + DS R + G + + G +DS + +A
Sbjct: 2652 ERHGSHHQQSADSSRHSGIGH--GQASSAVRDSGHRGYSGSQASDNEGHSEDSDTQSVSA 2709
Query: 69 H-YGSLPQKSH 78
H Q+SH
Sbjct: 2710 HGQAGSHQQSH 2720
Score = 28.1 bits (61), Expect = 3.4
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 9 QRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKDSHHPARTA 68
+RHGS + +A + H+ G + + DS R + G + + G +DS + +A
Sbjct: 2976 ERHGSHHQQSADSSRHSGIGH--GQASSAVRDSGHRGYSGSQASDNEGHSEDSDTQSVSA 3033
Query: 69 H-YGSLPQKSH 78
H Q+SH
Sbjct: 3034 HGQAGSHQQSH 3044
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 32.7 bits (73), Expect = 0.14
Identities = 34/134 (25%), Positives = 48/134 (35%), Gaps = 14/134 (10%)
Query: 3 SQKRPSQRHGSKYLATASTMDHARHG-----FLPRHRDTGILDSIGRFFGGDRGAPKRGS 57
S R S RH S + S H P+HRD G R G +P GS
Sbjct: 247 SPGRRSHRHSSGSSHSPSLSSHYSDSRSPSRLSPKHRDEGRKTGSQRSSGSRSPSPSGGS 306
Query: 58 G-----KDSHHPARTAHYGSLPQKSHG-RTQDENPVVHFFKNIVTPRTPPPSQGKGAEGQ 111
G ++ R+ +G P +H + +P PP++GK +
Sbjct: 307 GWGSPQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSP 366
Query: 112 R---PGFGYGGRAS 122
R G GGRA+
Sbjct: 367 RSAPSSQGRGGRAA 380
>gi|148806908 fibronectin type III domain containing 1 [Homo
sapiens]
Length = 1894
Score = 31.6 bits (70), Expect = 0.30
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 6 RPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGD--RGAPKRGSGKDSHH 63
RP RHG +A T AR LPR +D G GAP S +HH
Sbjct: 567 RPPSRHGHSVVAPGRTAVRARMPALPRREG---VDKPGFSLATQPRPGAPPSASASPAHH 623
Query: 64 PAR--TAHYGSLP 74
+ T+H SLP
Sbjct: 624 ASTQGTSHRPSLP 636
>gi|21618325 forkhead box E1 [Homo sapiens]
Length = 373
Score = 30.4 bits (67), Expect = 0.68
Identities = 23/68 (33%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 91 FKNIVTPRTPPPSQGKGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRD 150
F + P T Q G G RP S Y +A+ G G QG S IF GR
Sbjct: 249 FASAGAPATTTGYQPAGCTGARPA-----NPSAYAAAYAGPDGAYPQGAGSAIFAAAGRL 303
Query: 151 SRSGSPMA 158
+ SP A
Sbjct: 304 AGPASPPA 311
>gi|169216092 PREDICTED: similar to hCG2038853 [Homo sapiens]
Length = 191
Score = 30.0 bits (66), Expect = 0.88
Identities = 29/113 (25%), Positives = 41/113 (36%), Gaps = 4/113 (3%)
Query: 47 GGDRGAPKRGSGKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGK 106
G G GSG + P+K T + V F+ T P +
Sbjct: 65 GWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRA--- 121
Query: 107 GAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSGSPMAR 159
G EG R G+ G R S KG +G D +G + GG + +P+ R
Sbjct: 122 GTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDV-GFGGAGTGPETPLGR 173
>gi|169215887 PREDICTED: similar to hCG2038853 [Homo sapiens]
Length = 191
Score = 30.0 bits (66), Expect = 0.88
Identities = 29/113 (25%), Positives = 41/113 (36%), Gaps = 4/113 (3%)
Query: 47 GGDRGAPKRGSGKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGK 106
G G GSG + P+K T + V F+ T P +
Sbjct: 65 GWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRA--- 121
Query: 107 GAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSGSPMAR 159
G EG R G+ G R S KG +G D +G + GG + +P+ R
Sbjct: 122 GTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDV-GFGGAGTGPETPLGR 173
>gi|169215666 PREDICTED: similar to hCG2038853 [Homo sapiens]
Length = 191
Score = 30.0 bits (66), Expect = 0.88
Identities = 29/113 (25%), Positives = 41/113 (36%), Gaps = 4/113 (3%)
Query: 47 GGDRGAPKRGSGKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGK 106
G G GSG + P+K T + V F+ T P +
Sbjct: 65 GWGEGLELGGSGPTGKARPASESGPLTPRKGASHTPEAPGVGRAFRVQGTACQRPRA--- 121
Query: 107 GAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSGSPMAR 159
G EG R G+ G R S KG +G D +G + GG + +P+ R
Sbjct: 122 GTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDV-GFGGAGTGPETPLGR 173
>gi|194097354 G1 to S phase transition 1 isoform 2 [Homo sapiens]
Length = 636
Score = 29.6 bits (65), Expect = 1.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 97 PRTPPPSQGKGAEGQRPGFGYGGRASDYKSAHK 129
P PPP G A G G GGRA+ +S+ +
Sbjct: 93 PAAPPPPAGGAANNHGAGSGAGGRAAPVESSQE 125
>gi|194018520 G1 to S phase transition 1 isoform 1 [Homo sapiens]
Length = 637
Score = 29.6 bits (65), Expect = 1.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 97 PRTPPPSQGKGAEGQRPGFGYGGRASDYKSAHK 129
P PPP G A G G GGRA+ +S+ +
Sbjct: 93 PAAPPPPAGGAANNHGAGSGAGGRAAPVESSQE 125
>gi|19920317 cytoskeleton-associated protein 4 [Homo sapiens]
Length = 602
Score = 29.3 bits (64), Expect = 1.5
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 97 PRTPPPSQGKGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLG 147
P+ P +Q G G R G G GG++S SA A + S +LG
Sbjct: 55 PQQHPQNQAHGKGGHRGGGGGGGKSSSSSSASAAAAAAAASSSASCSRRLG 105
>gi|7662018 PHD finger protein 3 [Homo sapiens]
Length = 2039
Score = 29.3 bits (64), Expect = 1.5
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 49 DRGAPKRGSGKDSHHPARTAHYGSLPQKSHGRTQDENPVV 88
D+ G K+ HHPA+T H QK + Q + P +
Sbjct: 598 DKSHAHPGCLKEPHHPAQTGHVSHSSQKQCHKPQQQAPAM 637
>gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens]
Length = 1603
Score = 29.3 bits (64), Expect = 1.5
Identities = 27/102 (26%), Positives = 38/102 (37%), Gaps = 7/102 (6%)
Query: 57 SGKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIV--TPRTPPPSQGKGAEGQRPG 114
S + + P R A YG P S R + P + + + +P T PP A P
Sbjct: 916 SARQTFPPGRAASYGLTPAASDCRAAETFPKLVPPPSAMARSPTTHPP-----ANTYLPQ 970
Query: 115 FGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSGSP 156
+G G + K F G D + F G +S SP
Sbjct: 971 YGGYGAGQSVFAPTKPFTGQDCANSKDCSFAYGSGNSLPASP 1012
>gi|7662238 apoptotic chromatin condensation inducer 1 [Homo
sapiens]
Length = 1341
Score = 28.9 bits (63), Expect = 2.0
Identities = 31/127 (24%), Positives = 46/127 (36%), Gaps = 18/127 (14%)
Query: 49 DRGAPKRGSGKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFF---KNIVT--------- 96
+RG+PK+ +++ PA T S Q SH E+ +H K VT
Sbjct: 726 ERGSPKKCEAEEAEPPAATQPQTSETQTSH---LPESERIHHTVEEKEEVTMDTSENRPE 782
Query: 97 ---PRTPPPSQGKGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRS 153
P P P + + RP S K FK + + +K G D+
Sbjct: 783 NDVPEPPMPIADQVSNDDRPEGSVEDEEKKESSLPKSFKRKISVVSATKGVPAGNSDTEG 842
Query: 154 GSPMARR 160
G P +R
Sbjct: 843 GQPGRKR 849
>gi|61743948 abl-interactor 1 isoform d [Homo sapiens]
Length = 476
Score = 28.9 bits (63), Expect = 2.0
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 62 HHPARTAHYGSLPQKSHGRT-----QDENPVVHFFKNIVTPRTPPPSQGKGAEGQRPGFG 116
H P RTA P+ G + ++ + I P PP+ G A G PG
Sbjct: 219 HSPGRTASLNQRPRTHSGSSGGSGSRENSGSSSIGIPIAVPTPSPPTIGPAAPGSAPGSQ 278
Query: 117 YG 118
YG
Sbjct: 279 YG 280
>gi|61743946 abl-interactor 1 isoform c [Homo sapiens]
Length = 452
Score = 28.9 bits (63), Expect = 2.0
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 62 HHPARTAHYGSLPQKSHGRT-----QDENPVVHFFKNIVTPRTPPPSQGKGAEGQRPGFG 116
H P RTA P+ G + ++ + I P PP+ G A G PG
Sbjct: 224 HSPGRTASLNQRPRTHSGSSGGSGSRENSGSSSIGIPIAVPTPSPPTIGPAAPGSAPGSQ 283
Query: 117 YG 118
YG
Sbjct: 284 YG 285
>gi|61743944 abl-interactor 1 isoform b [Homo sapiens]
Length = 481
Score = 28.9 bits (63), Expect = 2.0
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 62 HHPARTAHYGSLPQKSHGRT-----QDENPVVHFFKNIVTPRTPPPSQGKGAEGQRPGFG 116
H P RTA P+ G + ++ + I P PP+ G A G PG
Sbjct: 224 HSPGRTASLNQRPRTHSGSSGGSGSRENSGSSSIGIPIAVPTPSPPTIGPAAPGSAPGSQ 283
Query: 117 YG 118
YG
Sbjct: 284 YG 285
>gi|169646441 GDP dissociation inhibitor 2 isoform 2 [Homo sapiens]
Length = 400
Score = 28.5 bits (62), Expect = 2.6
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 57 SGKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGKGAE 109
+GK H R +YG G + P+ +K P +PP S G+G +
Sbjct: 26 NGKKVLHMDRNPYYG-------GESASITPLEDLYKRFKIPGSPPESMGRGRD 71
>gi|6598323 GDP dissociation inhibitor 2 isoform 1 [Homo sapiens]
Length = 445
Score = 28.5 bits (62), Expect = 2.6
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 57 SGKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGKGAE 109
+GK H R +YG G + P+ +K P +PP S G+G +
Sbjct: 26 NGKKVLHMDRNPYYG-------GESASITPLEDLYKRFKIPGSPPESMGRGRD 71
>gi|56788370 pleckstrin and Sec7 domain containing 4 [Homo sapiens]
Length = 1056
Score = 28.5 bits (62), Expect = 2.6
Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 4/110 (3%)
Query: 7 PSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKDSHHPAR 66
P +H S + T+D ++ L D S+ + G+ APK G S AR
Sbjct: 470 PQLQHHSSGILPKWTLDASQSSLL--ETDGEQPSSLKKKEAGE--APKPGEEVKSEGTAR 525
Query: 67 TAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGKGAEGQRPGFG 116
A G + H + + + + P +P P EGQRP G
Sbjct: 526 PAETGDVQPDIHLTSAEHENLRTPMNSSWLPGSPMPQAQSPEEGQRPPAG 575
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 28.1 bits (61), Expect = 3.4
Identities = 35/136 (25%), Positives = 51/136 (37%), Gaps = 32/136 (23%)
Query: 2 ASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGR----FFGGDRGAPKRGS 57
+ Q +RHGS ++ S+ + +HG +G S+G G +P RG
Sbjct: 1434 SGQSSRGERHGS---SSGSSSSYGQHG-------SGSRQSLGHGQHGSGSGQSPSPSRGR 1483
Query: 58 -GKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGKG----AEGQR 112
G S + + YGS S R E+ H S G G GQ
Sbjct: 1484 HGSGSGQSSSYSPYGSGSGWSSSRGPYESGSSH-------------SSGLGHRESRSGQS 1530
Query: 113 PGFGYGGRASDYKSAH 128
G+G G +S + S H
Sbjct: 1531 SGYGQHGSSSGHSSTH 1546
Score = 27.7 bits (60), Expect = 4.4
Identities = 35/136 (25%), Positives = 51/136 (37%), Gaps = 32/136 (23%)
Query: 2 ASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGR----FFGGDRGAPKRGS 57
+ Q +RHGS ++ S+ + +HG +G S+G G +P RG
Sbjct: 2374 SGQSSRGERHGS---SSGSSSSYGQHG-------SGSRQSLGHGQHGSGSGQSPSPSRGR 2423
Query: 58 -GKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGKG----AEGQR 112
G S + + YGS S R E+ H S G G GQ
Sbjct: 2424 HGSGSGQSSSYSPYGSGSGWSSSRGPYESGSGH-------------SSGLGHRESRSGQS 2470
Query: 113 PGFGYGGRASDYKSAH 128
G+G G +S + S H
Sbjct: 2471 SGYGQHGSSSGHSSTH 2486
Score = 27.3 bits (59), Expect = 5.7
Identities = 30/140 (21%), Positives = 46/140 (32%), Gaps = 10/140 (7%)
Query: 3 SQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKDS- 61
S R S HG + + + H RHG H + G + RG + GSG+ S
Sbjct: 288 SGSRQSLGHGRQGSGSRQSPSHVRHGSGSGHSSSHGQHGSGSSYSYSRGHYESGSGQTSG 347
Query: 62 --HHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGKGAEGQRPGFGYGG 119
H + + + G + H + S G+ R YG
Sbjct: 348 FGQHESGSGQSSGYSKHGSGSGHSSSQGQH-----GSTSGQASSSGQHGSSSRQSSSYGQ 402
Query: 120 RASDYKSAHKGFKGVDAQGT 139
S S H +G + G+
Sbjct: 403 HES--ASRHSSGRGQHSSGS 420
Score = 27.3 bits (59), Expect = 5.7
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
Query: 57 SGKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGKGAEGQRPGFG 116
SG+ S + + GS + + H + ++P PS+G+ G R
Sbjct: 498 SGQSSRGERQGSSAGSSSSYGQHGSGSRQSLGHSRHGSGSGQSPSPSRGRHESGSRQSSS 557
Query: 117 YGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSG 154
YG Y S +G G+ LG ++SRSG
Sbjct: 558 YGPHG--YGSGRSSSRGPYESGS-GHSSGLGHQESRSG 592
Score = 26.9 bits (58), Expect = 7.5
Identities = 42/163 (25%), Positives = 60/163 (36%), Gaps = 34/163 (20%)
Query: 2 ASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGR----FFGGDRGAPKRGS 57
+ Q ++HGS ++ S+ + +HG +G S+G G +P RG
Sbjct: 1904 SGQSSRGEQHGS---SSGSSSSYGQHG-------SGSRQSLGHGQHGSGSGQSPSPSRGR 1953
Query: 58 -GKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGKG----AEGQR 112
G S + YGS S R E+ H S G G GQ
Sbjct: 1954 HGSGSGQSSSYGPYGSGSGWSSSRGPYESGSGH-------------SSGLGHRESRSGQS 2000
Query: 113 PGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSGS 155
G+G G +S + S H G G A G S + G +S S
Sbjct: 2001 SGYGQHGSSSGHSSTH-GQHG-SASGQSSSCGQHGASSGQSSS 2041
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.135 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,635,097
Number of Sequences: 37866
Number of extensions: 410211
Number of successful extensions: 1275
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 1201
Number of HSP's gapped (non-prelim): 118
length of query: 160
length of database: 18,247,518
effective HSP length: 94
effective length of query: 66
effective length of database: 14,688,114
effective search space: 969415524
effective search space used: 969415524
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.