Search of human proteins with 68509928

Search of human proteins with 68509928

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|68509928 myelin basic protein isoform 3 [Homo sapiens]
         (171 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|68509940 Golli-mbp isoform 1 [Homo sapiens]                        359   e-100
gi|68509928 myelin basic protein isoform 3 [Homo sapiens]             359   e-100
gi|68509930 myelin basic protein isoform 1 [Homo sapiens]             345   1e-95
gi|68509932 myelin basic protein isoform 4 [Homo sapiens]             328   1e-90
gi|4505123 myelin basic protein isoform 2 [Homo sapiens]              314   3e-86
gi|68509938 Golli-mbp isoform 2 [Homo sapiens]                        126   1e-29
gi|60097902 filaggrin [Homo sapiens]                                   36   0.018
gi|169216092 PREDICTED: similar to hCG2038853 [Homo sapiens]           33   0.092
gi|169215887 PREDICTED: similar to hCG2038853 [Homo sapiens]           33   0.092
gi|169215666 PREDICTED: similar to hCG2038853 [Homo sapiens]           33   0.092
gi|148806908 fibronectin type III domain containing 1 [Homo sapi...    32   0.35 
gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3...    32   0.35 
gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1...    32   0.35 
gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4...    32   0.35 
gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2 [...    32   0.35 
gi|158854042 hypothetical protein LOC222183 [Homo sapiens]             31   0.46 
gi|212549553 interleukin enhancer binding factor 3 isoform d [Ho...    30   0.78 
gi|24234750 interleukin enhancer binding factor 3 isoform a [Hom...    30   0.78 
gi|239754772 PREDICTED: hypothetical protein [Homo sapiens]            30   1.0  
gi|239749310 PREDICTED: hypothetical protein XP_002346992 [Homo ...    30   1.0  
gi|239743404 PREDICTED: hypothetical protein XP_002342840 [Homo ...    30   1.0  
gi|239509103 PREDICTED: hypothetical protein [Homo sapiens]            30   1.0  
gi|169646441 GDP dissociation inhibitor 2 isoform 2 [Homo sapiens]     30   1.0  
gi|6598323 GDP dissociation inhibitor 2 isoform 1 [Homo sapiens]       30   1.0  
gi|57864582 hornerin [Homo sapiens]                                    29   1.7  
gi|7662018 PHD finger protein 3 [Homo sapiens]                         29   1.7  
gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting ...    29   2.3  
gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting ...    29   2.3  
gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting ...    29   2.3  
gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting ...    29   2.3  

>gi|68509940 Golli-mbp isoform 1 [Homo sapiens]
          Length = 304

 Score =  359 bits (922), Expect = e-100
 Identities = 171/171 (100%), Positives = 171/171 (100%)

Query: 1   MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKD 60
           MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKD
Sbjct: 134 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKD 193

Query: 61  SHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGKGRGLSLSRFSWGAE 120
           SHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGKGRGLSLSRFSWGAE
Sbjct: 194 SHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGKGRGLSLSRFSWGAE 253

Query: 121 GQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSGSPMARR 171
           GQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSGSPMARR
Sbjct: 254 GQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSGSPMARR 304


>gi|68509928 myelin basic protein isoform 3 [Homo sapiens]
          Length = 171

 Score =  359 bits (922), Expect = e-100
 Identities = 171/171 (100%), Positives = 171/171 (100%)

Query: 1   MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKD 60
           MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKD
Sbjct: 1   MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKD 60

Query: 61  SHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGKGRGLSLSRFSWGAE 120
           SHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGKGRGLSLSRFSWGAE
Sbjct: 61  SHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGKGRGLSLSRFSWGAE 120

Query: 121 GQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSGSPMARR 171
           GQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSGSPMARR
Sbjct: 121 GQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSGSPMARR 171


>gi|68509930 myelin basic protein isoform 1 [Homo sapiens]
          Length = 197

 Score =  345 bits (885), Expect = 1e-95
 Identities = 171/197 (86%), Positives = 171/197 (86%), Gaps = 26/197 (13%)

Query: 1   MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGK- 59
           MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGK 
Sbjct: 1   MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV 60

Query: 60  -------------------------DSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI 94
                                    DSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI
Sbjct: 61  PWLKPGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI 120

Query: 95  VTPRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKI 154
           VTPRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKI
Sbjct: 121 VTPRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKI 180

Query: 155 FKLGGRDSRSGSPMARR 171
           FKLGGRDSRSGSPMARR
Sbjct: 181 FKLGGRDSRSGSPMARR 197


>gi|68509932 myelin basic protein isoform 4 [Homo sapiens]
          Length = 160

 Score =  328 bits (841), Expect = 1e-90
 Identities = 160/171 (93%), Positives = 160/171 (93%), Gaps = 11/171 (6%)

Query: 1   MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKD 60
           MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKD
Sbjct: 1   MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKD 60

Query: 61  SHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGKGRGLSLSRFSWGAE 120
           SHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGK           GAE
Sbjct: 61  SHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGK-----------GAE 109

Query: 121 GQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSGSPMARR 171
           GQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSGSPMARR
Sbjct: 110 GQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSGSPMARR 160


>gi|4505123 myelin basic protein isoform 2 [Homo sapiens]
          Length = 186

 Score =  314 bits (804), Expect = 3e-86
 Identities = 160/197 (81%), Positives = 160/197 (81%), Gaps = 37/197 (18%)

Query: 1   MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSG-- 58
           MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSG  
Sbjct: 1   MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV 60

Query: 59  ------------------------KDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI 94
                                   KDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI
Sbjct: 61  PWLKPGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNI 120

Query: 95  VTPRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKI 154
           VTPRTPPPSQGK           GAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKI
Sbjct: 121 VTPRTPPPSQGK-----------GAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKI 169

Query: 155 FKLGGRDSRSGSPMARR 171
           FKLGGRDSRSGSPMARR
Sbjct: 170 FKLGGRDSRSGSPMARR 186


>gi|68509938 Golli-mbp isoform 2 [Homo sapiens]
          Length = 197

 Score =  126 bits (316), Expect = 1e-29
 Identities = 60/61 (98%), Positives = 60/61 (98%)

Query: 1   MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKD 60
           MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGK 
Sbjct: 134 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV 193

Query: 61  S 61
           S
Sbjct: 194 S 194


>gi|60097902 filaggrin [Homo sapiens]
          Length = 4061

 Score = 35.8 bits (81), Expect = 0.018
 Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 33/171 (19%)

Query: 3    SQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKDSH 62
            ++  P +RHGS++  +A +  H+  G   R   + + DS  R   G +     G  +DS 
Sbjct: 1349 ARSSPGERHGSRHQQSADSSRHS--GIGHRQASSAVRDSGHRGSSGSQVTNSEGHSEDSD 1406

Query: 63   HPARTAHYGSLP-QKSH-----GRTQDENPVVHFFKNIVTP---------RTPPPSQGK- 106
              + +AH  + P Q+SH     G++ + +     F   V+          +T P + G+ 
Sbjct: 1407 TQSVSAHGQAGPHQQSHKESARGQSGESSGRSRSFLYQVSSHEQSESTHGQTAPSTGGRQ 1466

Query: 107  ----GRGLSLSRFSWGAEGQ-----RPGFGYGGRASDY------KSAHKGF 142
                 +  + SR S   +GQ      PG   GGR   Y      +S H G+
Sbjct: 1467 GSRHEQARNSSRHSASQDGQDTIRGHPGSSRGGRQGSYHEQSVDRSGHSGY 1517



 Score = 33.9 bits (76), Expect = 0.070
 Identities = 50/203 (24%), Positives = 69/203 (33%), Gaps = 39/203 (19%)

Query: 3    SQKRPSQRHGSKYLATASTMDHARHGFLPRH------RDTGILDSIGRFFGGDRGAPKRG 56
            ++  P +RHGS++  +A   D +RH  +PR       RD+G   S G       G  +  
Sbjct: 1025 ARSSPGERHGSRHQQSA---DSSRHSGIPRRQASSAVRDSGHWGSSGSQASDSEGHSEES 1081

Query: 57   -----SGKDSHHPARTAHYGSLPQKSHGR------------TQDENPVVHFFKNIVTPRT 99
                 SG     P + +H  S    S GR            T +++   H      T R 
Sbjct: 1082 DTQSVSGHGQDGPHQQSHQESARDWSGGRSGRSGSFIYQVSTHEQSESAHGRTRTSTGRR 1141

Query: 100  PPPSQGKGRGLSLSRFSWGAEGQ-----RPGFGYGGRASDY------KSAHKGFKGVDAQ 148
                  + R    SR S   EGQ      PG   GGR   +      +S H G       
Sbjct: 1142 QGSHHEQAR--DSSRHSASQEGQDTIRAHPGSRRGGRQGSHHEQSVDRSGHSGSHHSHTT 1199

Query: 149  GTLSKIFKLGGRDSRSGSPMARR 171
                     G   SRS S   R+
Sbjct: 1200 SQGRSDASHGQSGSRSASRQTRK 1222



 Score = 30.8 bits (68), Expect = 0.59
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 5/78 (6%)

Query: 3    SQKRPSQRHGSKYLATASTMDHARHGFLPR-HRDTGILDSIGRFFGGDRGAPKRGSGKDS 61
            ++  P +RHGS++  +A   D +RH  +PR    + + DS      G + +   G  ++S
Sbjct: 3294 ARSSPGERHGSRHQQSA---DSSRHSGIPRGQASSAVRDSRHWGSSGSQASDSEGHSEES 3350

Query: 62   HHPARTAHYGSLP-QKSH 78
               + + H  + P Q+SH
Sbjct: 3351 DTQSVSGHGQAGPHQQSH 3368



 Score = 28.1 bits (61), Expect = 3.9
 Identities = 38/175 (21%), Positives = 71/175 (40%), Gaps = 17/175 (9%)

Query: 4   QKRPSQRH-GSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKDSH 62
           Q     RH GS++   +S  D +RH  + + + +G   S  +     + +  +G  +DS 
Sbjct: 576 QSGDGTRHSGSRHHEASSQADSSRHSQVGQGQSSGPRTSRNQGSSVSQDSDSQGHSEDSE 635

Query: 63  HPARTA---HYGSLPQKS-----HGRTQDENPVVHFFKNIVTPRT---PPPSQGKGRGLS 111
             + +A   H+GS  ++S     H R+  E+   H      + ++      +   G+  S
Sbjct: 636 RWSGSASRNHHGSAQEQSRDGSRHPRSHHEDRAGHGHSADSSRKSGTRHTQNSSSGQAAS 695

Query: 112 LSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTLSKIFKLGGRDSRSGS 166
               +  + G+R G  +  +++D  S H G       G  S   +  G    SGS
Sbjct: 696 SHEQARSSAGERHGSRHQLQSAD-SSRHSG----TGHGQASSAVRDSGHRGSSGS 745



 Score = 28.1 bits (61), Expect = 3.9
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 8/90 (8%)

Query: 8    SQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKDSHHPART 67
            S+  GS +   +S  D +RH  + + + +G   S  R     + +   G  +DS   + +
Sbjct: 2203 SRHSGSHHHEASSWADSSRHSLVGQGQSSGPRTSRPRGSSVSQDSDSEGHSEDSERRSGS 2262

Query: 68   A---HYGSLPQKS-----HGRTQDENPVVH 89
            A   H+GS  ++S     H R+  E+   H
Sbjct: 2263 ASRNHHGSAQEQSRDGSRHPRSHHEDRAGH 2292



 Score = 28.1 bits (61), Expect = 3.9
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 9    QRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKDSHHPARTA 68
            +RHGS +  +A +  H+  G       + + DS  R + G + +   G  +DS   + +A
Sbjct: 2652 ERHGSHHQQSADSSRHSGIGH--GQASSAVRDSGHRGYSGSQASDNEGHSEDSDTQSVSA 2709

Query: 69   H-YGSLPQKSH 78
            H      Q+SH
Sbjct: 2710 HGQAGSHQQSH 2720



 Score = 28.1 bits (61), Expect = 3.9
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 9    QRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKDSHHPARTA 68
            +RHGS +  +A +  H+  G       + + DS  R + G + +   G  +DS   + +A
Sbjct: 2976 ERHGSHHQQSADSSRHSGIGH--GQASSAVRDSGHRGYSGSQASDNEGHSEDSDTQSVSA 3033

Query: 69   H-YGSLPQKSH 78
            H      Q+SH
Sbjct: 3034 HGQAGSHQQSH 3044


>gi|169216092 PREDICTED: similar to hCG2038853 [Homo sapiens]
          Length = 191

 Score = 33.5 bits (75), Expect = 0.092
 Identities = 40/139 (28%), Positives = 51/139 (36%), Gaps = 21/139 (15%)

Query: 50  RGA-PKRGSGKDSHHP--------ARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRT- 99
           RGA P    GK+  HP        AR      L     G T    P        +TPR  
Sbjct: 38  RGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASE--SGPLTPRKG 95

Query: 100 ---PPPSQGKGR-----GLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTL 151
               P + G GR     G +  R   G EG R G+  G R S      KG +G D +G  
Sbjct: 96  ASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPRGAA 155

Query: 152 SKIFKLGGRDSRSGSPMAR 170
             +   GG  +   +P+ R
Sbjct: 156 GDV-GFGGAGTGPETPLGR 173


>gi|169215887 PREDICTED: similar to hCG2038853 [Homo sapiens]
          Length = 191

 Score = 33.5 bits (75), Expect = 0.092
 Identities = 40/139 (28%), Positives = 51/139 (36%), Gaps = 21/139 (15%)

Query: 50  RGA-PKRGSGKDSHHP--------ARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRT- 99
           RGA P    GK+  HP        AR      L     G T    P        +TPR  
Sbjct: 38  RGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASE--SGPLTPRKG 95

Query: 100 ---PPPSQGKGR-----GLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTL 151
               P + G GR     G +  R   G EG R G+  G R S      KG +G D +G  
Sbjct: 96  ASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPRGAA 155

Query: 152 SKIFKLGGRDSRSGSPMAR 170
             +   GG  +   +P+ R
Sbjct: 156 GDV-GFGGAGTGPETPLGR 173


>gi|169215666 PREDICTED: similar to hCG2038853 [Homo sapiens]
          Length = 191

 Score = 33.5 bits (75), Expect = 0.092
 Identities = 40/139 (28%), Positives = 51/139 (36%), Gaps = 21/139 (15%)

Query: 50  RGA-PKRGSGKDSHHP--------ARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRT- 99
           RGA P    GK+  HP        AR      L     G T    P        +TPR  
Sbjct: 38  RGAKPSNLWGKEGGHPVVPKAQVKARGGWGEGLELGGSGPTGKARPASE--SGPLTPRKG 95

Query: 100 ---PPPSQGKGR-----GLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQGTL 151
               P + G GR     G +  R   G EG R G+  G R S      KG +G D +G  
Sbjct: 96  ASHTPEAPGVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPRGAA 155

Query: 152 SKIFKLGGRDSRSGSPMAR 170
             +   GG  +   +P+ R
Sbjct: 156 GDV-GFGGAGTGPETPLGR 173


>gi|148806908 fibronectin type III domain containing 1 [Homo
           sapiens]
          Length = 1894

 Score = 31.6 bits (70), Expect = 0.35
 Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 6   RPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGD--RGAPKRGSGKDSHH 63
           RP  RHG   +A   T   AR   LPR      +D  G         GAP   S   +HH
Sbjct: 567 RPPSRHGHSVVAPGRTAVRARMPALPRREG---VDKPGFSLATQPRPGAPPSASASPAHH 623

Query: 64  PAR--TAHYGSLP 74
            +   T+H  SLP
Sbjct: 624 ASTQGTSHRPSLP 636


>gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3
           [Homo sapiens]
          Length = 535

 Score = 31.6 bits (70), Expect = 0.35
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 11/50 (22%)

Query: 97  PRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVD 146
           PR PPP +G+GRG           G R G+GY      Y+  +  + G D
Sbjct: 342 PRMPPPIRGRGRG-----------GGRGGYGYPPDYYGYEDYYDDYYGYD 380


>gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1
           [Homo sapiens]
          Length = 636

 Score = 31.6 bits (70), Expect = 0.35
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 11/50 (22%)

Query: 97  PRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVD 146
           PR PPP +G+GRG           G R G+GY      Y+  +  + G D
Sbjct: 443 PRMPPPIRGRGRG-----------GGRGGYGYPPDYYGYEDYYDDYYGYD 481


>gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4
           [Homo sapiens]
          Length = 532

 Score = 31.6 bits (70), Expect = 0.35
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 11/50 (22%)

Query: 97  PRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVD 146
           PR PPP +G+GRG           G R G+GY      Y+  +  + G D
Sbjct: 339 PRMPPPIRGRGRG-----------GGRGGYGYPPDYYGYEDYYDDYYGYD 377


>gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2
           [Homo sapiens]
          Length = 633

 Score = 31.6 bits (70), Expect = 0.35
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 11/50 (22%)

Query: 97  PRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVD 146
           PR PPP +G+GRG           G R G+GY      Y+  +  + G D
Sbjct: 440 PRMPPPIRGRGRG-----------GGRGGYGYPPDYYGYEDYYDDYYGYD 478


>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
          Length = 653

 Score = 31.2 bits (69), Expect = 0.46
 Identities = 35/140 (25%), Positives = 47/140 (33%), Gaps = 11/140 (7%)

Query: 3   SQKRPSQRHGSKYLATASTMDHARHG-----FLPRHRDTGILDSIGRFFGGDRGAPKRGS 57
           S  R S RH S    + S   H           P+HRD G      R  G    +P  GS
Sbjct: 247 SPGRRSHRHSSGSSHSPSLSSHYSDSRSPSRLSPKHRDEGRKTGSQRSSGSRSPSPSGGS 306

Query: 58  G-----KDSHHPARTAHYGSLPQKSHG-RTQDENPVVHFFKNIVTPRTPPPSQGKGRGLS 111
           G     ++     R+  +G  P  +H    +  +P              PP++GK     
Sbjct: 307 GWGSPQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSP 366

Query: 112 LSRFSWGAEGQRPGFGYGGR 131
            S  S    G R   G G R
Sbjct: 367 RSAPSSQGRGGRAAGGAGRR 386


>gi|212549553 interleukin enhancer binding factor 3 isoform d [Homo
           sapiens]
          Length = 898

 Score = 30.4 bits (67), Expect = 0.78
 Identities = 27/102 (26%), Positives = 37/102 (36%), Gaps = 13/102 (12%)

Query: 43  GRFFGGDRG----APKRGSGKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPR 98
           G ++ GD       PK    K  H   +   YGS  Q   G+ Q  N      ++  +  
Sbjct: 718 GSYYQGDNYNSPVPPKHAGKKQPHGGQQKPSYGSGYQSHQGQQQSYN------QSPYSNY 771

Query: 99  TPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHK 140
            PP  + KG       +S+      PG   GG  SDY    K
Sbjct: 772 GPPQGKQKGYNHGQGSYSYSNSYNSPG---GGGGSDYNYESK 810


>gi|24234750 interleukin enhancer binding factor 3 isoform a [Homo
           sapiens]
          Length = 894

 Score = 30.4 bits (67), Expect = 0.78
 Identities = 27/102 (26%), Positives = 37/102 (36%), Gaps = 13/102 (12%)

Query: 43  GRFFGGDRG----APKRGSGKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPR 98
           G ++ GD       PK    K  H   +   YGS  Q   G+ Q  N      ++  +  
Sbjct: 714 GSYYQGDNYNSPVPPKHAGKKQPHGGQQKPSYGSGYQSHQGQQQSYN------QSPYSNY 767

Query: 99  TPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHK 140
            PP  + KG       +S+      PG   GG  SDY    K
Sbjct: 768 GPPQGKQKGYNHGQGSYSYSNSYNSPG---GGGGSDYNYESK 806


>gi|239754772 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 95

 Score = 30.0 bits (66), Expect = 1.0
 Identities = 27/82 (32%), Positives = 32/82 (39%), Gaps = 10/82 (12%)

Query: 98  RTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQG-------- 149
           R P   Q +GR     R + G  G  PGF  GGR +  K    G  GV   G        
Sbjct: 15  RRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDK-GRPGSPGVPGGGGAEAWGPR 73

Query: 150 TLSKIFKLGGRDSRSGS-PMAR 170
             S+    G RD   G+ P AR
Sbjct: 74  AASRTRLAGSRDGEGGTDPSAR 95


>gi|239749310 PREDICTED: hypothetical protein XP_002346992 [Homo
           sapiens]
          Length = 95

 Score = 30.0 bits (66), Expect = 1.0
 Identities = 27/82 (32%), Positives = 32/82 (39%), Gaps = 10/82 (12%)

Query: 98  RTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQG-------- 149
           R P   Q +GR     R + G  G  PGF  GGR +  K    G  GV   G        
Sbjct: 15  RRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDK-GRPGSPGVPGGGGAEAWGPR 73

Query: 150 TLSKIFKLGGRDSRSGS-PMAR 170
             S+    G RD   G+ P AR
Sbjct: 74  AASRTRLAGSRDGEGGTDPSAR 95


>gi|239743404 PREDICTED: hypothetical protein XP_002342840 [Homo
           sapiens]
          Length = 95

 Score = 30.0 bits (66), Expect = 1.0
 Identities = 27/82 (32%), Positives = 32/82 (39%), Gaps = 10/82 (12%)

Query: 98  RTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQG-------- 149
           R P   Q +GR     R + G  G  PGF  GGR +  K    G  GV   G        
Sbjct: 15  RRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDK-GRPGSPGVPGGGGAEAWGPR 73

Query: 150 TLSKIFKLGGRDSRSGS-PMAR 170
             S+    G RD   G+ P AR
Sbjct: 74  AASRTRLAGSRDGEGGTDPSAR 95


>gi|239509103 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 95

 Score = 30.0 bits (66), Expect = 1.0
 Identities = 27/82 (32%), Positives = 32/82 (39%), Gaps = 10/82 (12%)

Query: 98  RTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGVDAQG-------- 149
           R P   Q +GR     R + G  G  PGF  GGR +  K    G  GV   G        
Sbjct: 15  RRPRQRQHRGRERRTRRDAQGPRGGGPGFRAGGRRTPDK-GRPGSPGVPGGGGAEAWGPR 73

Query: 150 TLSKIFKLGGRDSRSGS-PMAR 170
             S+    G RD   G+ P AR
Sbjct: 74  AASRTRLAGSRDGEGGTDPSAR 95


>gi|169646441 GDP dissociation inhibitor 2 isoform 2 [Homo sapiens]
          Length = 400

 Score = 30.0 bits (66), Expect = 1.0
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 7/52 (13%)

Query: 57  SGKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGKGR 108
           +GK   H  R  +YG       G +    P+   +K    P +PP S G+GR
Sbjct: 26  NGKKVLHMDRNPYYG-------GESASITPLEDLYKRFKIPGSPPESMGRGR 70


>gi|6598323 GDP dissociation inhibitor 2 isoform 1 [Homo sapiens]
          Length = 445

 Score = 30.0 bits (66), Expect = 1.0
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 7/52 (13%)

Query: 57  SGKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGKGR 108
           +GK   H  R  +YG       G +    P+   +K    P +PP S G+GR
Sbjct: 26  NGKKVLHMDRNPYYG-------GESASITPLEDLYKRFKIPGSPPESMGRGR 70


>gi|57864582 hornerin [Homo sapiens]
          Length = 2850

 Score = 29.3 bits (64), Expect = 1.7
 Identities = 32/141 (22%), Positives = 43/141 (30%), Gaps = 10/141 (7%)

Query: 8   SQRHGSKYLATAS----TMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKDSHH 63
           S  H S Y    S    +  H +HG        G             G    GS +   H
Sbjct: 471 SSEHSSGYTQHGSGSGHSSGHGQHGSRSGQSSRGERQGSSAGSSSSYGQHGSGSRQSLGH 530

Query: 64  PARTAHYGSLPQKSHGR-----TQDENPVVHFFKNIVTPRTPPPSQGKGRGLSLSRFSWG 118
               +  G  P  S GR      Q  +   H + +  +    P   G G    L      
Sbjct: 531 SRHGSGSGQSPSPSRGRHESGSRQSSSYGPHGYGSGRSSSRGPYESGSGHSSGLGHQE-S 589

Query: 119 AEGQRPGFGYGGRASDYKSAH 139
             GQ  G+G  G +S + S H
Sbjct: 590 RSGQSSGYGQHGSSSGHSSTH 610



 Score = 28.5 bits (62), Expect = 3.0
 Identities = 38/153 (24%), Positives = 51/153 (33%), Gaps = 29/153 (18%)

Query: 3   SQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKD-- 60
           S  R S  HG +   +  +  H RHG    H  +      G  +   RG  + GSG+   
Sbjct: 288 SGSRQSLGHGRQGSGSRQSPSHVRHGSGSGHSSSHGQHGSGSSYSYSRGHYESGSGQTSG 347

Query: 61  --------------SHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGK 106
                         S H + + H  S  Q  HG T  +        +     +   S   
Sbjct: 348 FGQHESGSGQSSGYSKHGSGSGHSSS--QGQHGSTSGQAS-----SSGQHGSSSRQSSSY 400

Query: 107 GRGLSLSRFSWG------AEGQRPGFGYGGRAS 133
           G+  S SR S G        GQ PG G  G  S
Sbjct: 401 GQHESASRHSSGRGQHSSGSGQSPGHGQRGSGS 433



 Score = 27.7 bits (60), Expect = 5.0
 Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 27/139 (19%)

Query: 2    ASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKDS 61
            + Q   S++HGS   ++ S+  + +HG       +G   S+G    G  G+   GSG+ S
Sbjct: 964  SGQSSRSEQHGS---SSGSSSSYGQHG-------SGSRQSLGH---GQHGS---GSGQ-S 1006

Query: 62   HHPARTAH-YGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGKGRGLSLSRFSWGAE 120
              P+R  H  GS    S+G  +  +          +    P   G G    L        
Sbjct: 1007 PSPSRGRHGSGSGQSSSYGPYRSGSGW--------SSSRGPYESGSGHSSGLGHRE-SRS 1057

Query: 121  GQRPGFGYGGRASDYKSAH 139
            GQ  G+G  G +S + S H
Sbjct: 1058 GQSSGYGQHGSSSGHSSTH 1076



 Score = 27.7 bits (60), Expect = 5.0
 Identities = 37/143 (25%), Positives = 53/143 (37%), Gaps = 35/143 (24%)

Query: 2    ASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGR----FFGGDRGAPKRGS 57
            + Q    +RHGS   ++ S+  + +HG       +G   S+G        G   +P RG 
Sbjct: 1434 SGQSSRGERHGS---SSGSSSSYGQHG-------SGSRQSLGHGQHGSGSGQSPSPSRGR 1483

Query: 58   -GKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGKGRGLSLSRFS 116
             G  S   +  + YGS    S  R   E+   H             S G G   S S   
Sbjct: 1484 HGSGSGQSSSYSPYGSGSGWSSSRGPYESGSSH-------------SSGLGHRESRS--- 1527

Query: 117  WGAEGQRPGFGYGGRASDYKSAH 139
                GQ  G+G  G +S + S H
Sbjct: 1528 ----GQSSGYGQHGSSSGHSSTH 1546



 Score = 27.3 bits (59), Expect = 6.6
 Identities = 37/143 (25%), Positives = 53/143 (37%), Gaps = 35/143 (24%)

Query: 2    ASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGR----FFGGDRGAPKRGS 57
            + Q    +RHGS   ++ S+  + +HG       +G   S+G        G   +P RG 
Sbjct: 2374 SGQSSRGERHGS---SSGSSSSYGQHG-------SGSRQSLGHGQHGSGSGQSPSPSRGR 2423

Query: 58   -GKDSHHPARTAHYGSLPQKSHGRTQDENPVVHFFKNIVTPRTPPPSQGKGRGLSLSRFS 116
             G  S   +  + YGS    S  R   E+   H             S G G   S S   
Sbjct: 2424 HGSGSGQSSSYSPYGSGSGWSSSRGPYESGSGH-------------SSGLGHRESRS--- 2467

Query: 117  WGAEGQRPGFGYGGRASDYKSAH 139
                GQ  G+G  G +S + S H
Sbjct: 2468 ----GQSSGYGQHGSSSGHSSTH 2486


>gi|7662018 PHD finger protein 3 [Homo sapiens]
          Length = 2039

 Score = 29.3 bits (64), Expect = 1.7
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 49  DRGAPKRGSGKDSHHPARTAHYGSLPQKSHGRTQDENPVV 88
           D+     G  K+ HHPA+T H     QK   + Q + P +
Sbjct: 598 DKSHAHPGCLKEPHHPAQTGHVSHSSQKQCHKPQQQAPAM 637


>gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 6 [Homo sapiens]
          Length = 562

 Score = 28.9 bits (63), Expect = 2.3
 Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 27/89 (30%)

Query: 97  PRTPPPSQGKGRGLSLSRFSWGAEGQRP------------GFGYGGRASDYKSAHKGFKG 144
           P  PPP++G+GRG        G  G  P            G+ Y      Y+  + G++ 
Sbjct: 437 PHMPPPTRGRGRG------GRGGYGYPPDYYGYEDYYDYYGYDYHNYRGGYEDPYYGYED 490

Query: 145 --VDAQGTLSKIFKLGGRDSRSGSPMARR 171
             V A+G        GGR +R  +P   R
Sbjct: 491 FQVGARGR-------GGRGARGAAPSRGR 512


>gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 3 [Homo sapiens]
          Length = 527

 Score = 28.9 bits (63), Expect = 2.3
 Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 27/89 (30%)

Query: 97  PRTPPPSQGKGRGLSLSRFSWGAEGQRP------------GFGYGGRASDYKSAHKGFKG 144
           P  PPP++G+GRG        G  G  P            G+ Y      Y+  + G++ 
Sbjct: 402 PHMPPPTRGRGRG------GRGGYGYPPDYYGYEDYYDYYGYDYHNYRGGYEDPYYGYED 455

Query: 145 --VDAQGTLSKIFKLGGRDSRSGSPMARR 171
             V A+G        GGR +R  +P   R
Sbjct: 456 FQVGARGR-------GGRGARGAAPSRGR 477


>gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 2 [Homo sapiens]
          Length = 464

 Score = 28.9 bits (63), Expect = 2.3
 Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 27/89 (30%)

Query: 97  PRTPPPSQGKGRGLSLSRFSWGAEGQRP------------GFGYGGRASDYKSAHKGFKG 144
           P  PPP++G+GRG        G  G  P            G+ Y      Y+  + G++ 
Sbjct: 339 PHMPPPTRGRGRG------GRGGYGYPPDYYGYEDYYDYYGYDYHNYRGGYEDPYYGYED 392

Query: 145 --VDAQGTLSKIFKLGGRDSRSGSPMARR 171
             V A+G        GGR +R  +P   R
Sbjct: 393 FQVGARGR-------GGRGARGAAPSRGR 414


>gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 4 [Homo sapiens]
          Length = 588

 Score = 28.9 bits (63), Expect = 2.3
 Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 27/89 (30%)

Query: 97  PRTPPPSQGKGRGLSLSRFSWGAEGQRP------------GFGYGGRASDYKSAHKGFKG 144
           P  PPP++G+GRG        G  G  P            G+ Y      Y+  + G++ 
Sbjct: 402 PHMPPPTRGRGRG------GRGGYGYPPDYYGYEDYYDYYGYDYHNYRGGYEDPYYGYED 455

Query: 145 --VDAQGTLSKIFKLGGRDSRSGSPMARR 171
             V A+G        GGR +R  +P   R
Sbjct: 456 FQVGARGR-------GGRGARGAAPSRGR 477


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.135    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,049,379
Number of Sequences: 37866
Number of extensions: 430445
Number of successful extensions: 1134
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 1090
Number of HSP's gapped (non-prelim): 83
length of query: 171
length of database: 18,247,518
effective HSP length: 95
effective length of query: 76
effective length of database: 14,650,248
effective search space: 1113418848
effective search space used: 1113418848
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.