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Search of human proteins with 68303647
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|68303647 CUG triplet repeat, RNA binding protein 2 isoform 3
[Homo sapiens]
(508 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|68303647 CUG triplet repeat, RNA binding protein 2 isoform 3 ... 1000 0.0
gi|134152680 CUG triplet repeat, RNA binding protein 2 isoform 2... 959 0.0
gi|134152719 CUG triplet repeat, RNA binding protein 2 isoform 4... 947 0.0
gi|68303645 CUG triplet repeat, RNA binding protein 2 isoform 1 ... 946 0.0
gi|38570081 CUG triplet repeat, RNA-binding protein 1 isoform 2 ... 775 0.0
gi|5729794 CUG triplet repeat, RNA-binding protein 1 isoform 1 [... 774 0.0
gi|71164871 CUG triplet repeat, RNA-binding protein 1 isoform 3 ... 768 0.0
gi|71164894 trinucleotide repeat containing 4 [Homo sapiens] 386 e-107
gi|70780381 bruno-like 6, RNA binding protein [Homo sapiens] 377 e-104
gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo sa... 372 e-103
gi|187761299 bruno-like 4, RNA binding protein isoform 2 [Homo s... 361 e-99
gi|13123778 bruno-like 4, RNA binding protein isoform 1 [Homo sa... 359 3e-99
gi|187761301 bruno-like 4, RNA binding protein isoform 3 [Homo s... 358 8e-99
gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo s... 304 1e-82
gi|225579097 bruno-like 5, RNA binding protein isoform 2 [Homo s... 147 2e-35
gi|115511032 ELAV (embryonic lethal, abnormal vision, Drosophila... 82 9e-16
gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens] 82 1e-15
gi|38201714 ELAV-like 1 [Homo sapiens] 82 1e-15
gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens] 82 1e-15
gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens] 82 1e-15
gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens] 82 1e-15
gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens] 82 1e-15
gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens] 79 1e-14
gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens] 79 1e-14
gi|187960109 RNA binding motif protein 28 [Homo sapiens] 71 3e-12
gi|93277070 RNA binding motif protein 45 [Homo sapiens] 69 8e-12
gi|51317355 RNA binding motif, single stranded interacting prote... 69 1e-11
gi|51317351 RNA binding motif, single stranded interacting prote... 69 1e-11
gi|51317353 RNA binding motif, single stranded interacting prote... 68 2e-11
gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens] 67 3e-11
>gi|68303647 CUG triplet repeat, RNA binding protein 2 isoform 3
[Homo sapiens]
Length = 508
Score = 1000 bits (2585), Expect = 0.0
Identities = 508/508 (100%), Positives = 508/508 (100%)
Query: 1 MRCPKSAVTMRNEELLLSNGTANKMNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELF 60
MRCPKSAVTMRNEELLLSNGTANKMNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELF
Sbjct: 1 MRCPKSAVTMRNEELLLSNGTANKMNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELF 60
Query: 61 EPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKP 120
EPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKP
Sbjct: 61 EPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKP 120
Query: 121 ADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFS 180
ADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFS
Sbjct: 121 ADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFS 180
Query: 181 TRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNL 240
TRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNL
Sbjct: 181 TRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNL 240
Query: 241 TGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATST 300
TGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATST
Sbjct: 241 TGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATST 300
Query: 301 NANPLSTTSSALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAGM 360
NANPLSTTSSALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAGM
Sbjct: 301 NANPLSTTSSALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAGM 360
Query: 361 AALNGGLGATGLTNGTAGTMDALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGP 420
AALNGGLGATGLTNGTAGTMDALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGP
Sbjct: 361 AALNGGLGATGLTNGTAGTMDALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGP 420
Query: 421 EGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 480
EGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAA
Sbjct: 421 EGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 480
Query: 481 IQAMNGFQIGMKRLKVQLKRSKNDSKPY 508
IQAMNGFQIGMKRLKVQLKRSKNDSKPY
Sbjct: 481 IQAMNGFQIGMKRLKVQLKRSKNDSKPY 508
>gi|134152680 CUG triplet repeat, RNA binding protein 2 isoform 2
[Homo sapiens]
Length = 521
Score = 959 bits (2478), Expect = 0.0
Identities = 490/496 (98%), Positives = 490/496 (98%), Gaps = 6/496 (1%)
Query: 19 NGTANKMNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQN 78
NGTANKMNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQN
Sbjct: 26 NGTANKMNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQN 85
Query: 79 PPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGM 138
PPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGM
Sbjct: 86 PPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGM 145
Query: 139 VSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTM 198
VSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTM
Sbjct: 146 VSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTM 205
Query: 199 EGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQAT 258
EGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQAT
Sbjct: 206 EGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQAT 265
Query: 259 SSSNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSP 318
SSSNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSP
Sbjct: 266 SSSNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSP 325
Query: 319 VAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALA------GMAALNGGLGATGL 372
VAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALA GMAALNGGLGATGL
Sbjct: 326 VAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAVAQMLSGMAALNGGLGATGL 385
Query: 373 TNGTAGTMDALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQ 432
TNGTAGTMDALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQ
Sbjct: 386 TNGTAGTMDALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQ 445
Query: 433 EFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMK 492
EFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMK
Sbjct: 446 EFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMK 505
Query: 493 RLKVQLKRSKNDSKPY 508
RLKVQLKRSKNDSKPY
Sbjct: 506 RLKVQLKRSKNDSKPY 521
>gi|134152719 CUG triplet repeat, RNA binding protein 2 isoform 4
[Homo sapiens]
Length = 488
Score = 947 bits (2448), Expect = 0.0
Identities = 484/488 (99%), Positives = 484/488 (99%), Gaps = 4/488 (0%)
Query: 25 MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG 84
MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG
Sbjct: 1 MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG 60
Query: 85 CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCN 144
CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCN
Sbjct: 61 CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCN 120
Query: 145 ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSP 204
ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSP
Sbjct: 121 ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSP 180
Query: 205 IVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLG 264
IVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLG
Sbjct: 181 IVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLG 240
Query: 265 AFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPVAASTP 324
AFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPVAASTP
Sbjct: 241 AFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPVAASTP 300
Query: 325 NSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAG----MAALNGGLGATGLTNGTAGTM 380
NSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAG MAALNGGLGATGLTNGTAGTM
Sbjct: 301 NSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAGTINSMAALNGGLGATGLTNGTAGTM 360
Query: 381 DALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDIL 440
DALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDIL
Sbjct: 361 DALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDIL 420
Query: 441 QMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKR 500
QMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKR
Sbjct: 421 QMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKR 480
Query: 501 SKNDSKPY 508
SKNDSKPY
Sbjct: 481 SKNDSKPY 488
>gi|68303645 CUG triplet repeat, RNA binding protein 2 isoform 1
[Homo sapiens]
Length = 490
Score = 946 bits (2446), Expect = 0.0
Identities = 484/490 (98%), Positives = 484/490 (98%), Gaps = 6/490 (1%)
Query: 25 MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG 84
MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG
Sbjct: 1 MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG 60
Query: 85 CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCN 144
CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCN
Sbjct: 61 CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCN 120
Query: 145 ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSP 204
ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSP
Sbjct: 121 ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSP 180
Query: 205 IVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLG 264
IVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLG
Sbjct: 181 IVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLG 240
Query: 265 AFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPVAASTP 324
AFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPVAASTP
Sbjct: 241 AFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPVAASTP 300
Query: 325 NSTAGAAMNSLTSLGTLQGLAGATVGLNNINALA------GMAALNGGLGATGLTNGTAG 378
NSTAGAAMNSLTSLGTLQGLAGATVGLNNINALA GMAALNGGLGATGLTNGTAG
Sbjct: 301 NSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAVAQMLSGMAALNGGLGATGLTNGTAG 360
Query: 379 TMDALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQD 438
TMDALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQD
Sbjct: 361 TMDALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQD 420
Query: 439 ILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQL 498
ILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQL
Sbjct: 421 ILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQL 480
Query: 499 KRSKNDSKPY 508
KRSKNDSKPY
Sbjct: 481 KRSKNDSKPY 490
>gi|38570081 CUG triplet repeat, RNA-binding protein 1 isoform 2
[Homo sapiens]
Length = 483
Score = 775 bits (2002), Expect = 0.0
Identities = 393/487 (80%), Positives = 435/487 (89%), Gaps = 7/487 (1%)
Query: 25 MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG 84
MNG LDH DQPD DAIKMFVGQ+PR+WSEK+L+ELFE YGAVY+INVLRDRSQNPPQSKG
Sbjct: 1 MNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKG 60
Query: 85 CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCN 144
CCFVTFYTRKAALEAQNALHN+K LPGMHHPIQMKPADSEK+NAVEDRKLFIGM+SKKC
Sbjct: 61 CCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCT 120
Query: 145 ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSP 204
ENDIRVMFS FGQIEECRILRGPDGLSRGCAFVTF+TRAMAQ AIKAMHQ+QTMEGCSSP
Sbjct: 121 ENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP 180
Query: 205 IVVKFADTQKDKEQRRLQQQLAQQMQQLNTAT-WGNLTGLGGLTPQYLALLQQATSSSNL 263
+VVKFADTQKDKEQ+R+ QQL QQMQQ++ A+ WGNL GL L PQYLALLQQ SS NL
Sbjct: 181 MVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALLQQTASSGNL 240
Query: 264 GAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPVAAST 323
S + M G+NA+QLQNLA LAAAA+AAQ + + TNA L+T+SS L LTS A S+
Sbjct: 241 NTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNA--LTTSSSPLSVLTSS-AGSS 297
Query: 324 PNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAGMAALNGGLGATGLTNGTAGTMDAL 383
P+S++ ++N + SLG LQ LAGAT GL N+ +LAGMAALNGGLG++GL+NGT TM+AL
Sbjct: 298 PSSSSSNSVNPIASLGALQTLAGATAGL-NVGSLAGMAALNGGLGSSGLSNGTGSTMEAL 356
Query: 384 TQAYSGIQQYAAAALPTLYSQSLLQQQS--AAGSQKEGPEGANLFIYHLPQEFGDQDILQ 441
TQAYSGIQQYAAAALPTLY+Q+LL QQS AAGSQKEGPEGANLFIYHLPQEFGDQD+LQ
Sbjct: 357 TQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQ 416
Query: 442 MFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRS 501
MFMPFGNV+SAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ+MNGFQIGMKRLKVQLKRS
Sbjct: 417 MFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRS 476
Query: 502 KNDSKPY 508
KNDSKPY
Sbjct: 477 KNDSKPY 483
>gi|5729794 CUG triplet repeat, RNA-binding protein 1 isoform 1
[Homo sapiens]
Length = 482
Score = 774 bits (1999), Expect = 0.0
Identities = 392/487 (80%), Positives = 435/487 (89%), Gaps = 8/487 (1%)
Query: 25 MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG 84
MNG LDH DQPD DAIKMFVGQ+PR+WSEK+L+ELFE YGAVY+INVLRDRSQNPPQSKG
Sbjct: 1 MNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKG 60
Query: 85 CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCN 144
CCFVTFYTRKAALEAQNALHN+K LPGMHHPIQMKPADSEK+NAVEDRKLFIGM+SKKC
Sbjct: 61 CCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCT 120
Query: 145 ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSP 204
ENDIRVMFS FGQIEECRILRGPDGLSRGCAFVTF+TRAMAQ AIKAMHQ+QTMEGCSSP
Sbjct: 121 ENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP 180
Query: 205 IVVKFADTQKDKEQRRLQQQLAQQMQQLNTAT-WGNLTGLGGLTPQYLALLQQATSSSNL 263
+VVKFADTQKDKEQ+R+ QQL QQMQQ++ A+ WGNL GL L PQYLALLQQ SS NL
Sbjct: 181 MVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALLQQTASSGNL 240
Query: 264 GAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPVAAST 323
S + M G+NA+QLQNLA LAAAA+AAQ + + TNA L+T+SS L LTS + S+
Sbjct: 241 NTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNA--LTTSSSPLSVLTS--SGSS 296
Query: 324 PNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAGMAALNGGLGATGLTNGTAGTMDAL 383
P+S++ ++N + SLG LQ LAGAT GL N+ +LAGMAALNGGLG++GL+NGT TM+AL
Sbjct: 297 PSSSSSNSVNPIASLGALQTLAGATAGL-NVGSLAGMAALNGGLGSSGLSNGTGSTMEAL 355
Query: 384 TQAYSGIQQYAAAALPTLYSQSLLQQQS--AAGSQKEGPEGANLFIYHLPQEFGDQDILQ 441
TQAYSGIQQYAAAALPTLY+Q+LL QQS AAGSQKEGPEGANLFIYHLPQEFGDQD+LQ
Sbjct: 356 TQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQ 415
Query: 442 MFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRS 501
MFMPFGNV+SAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ+MNGFQIGMKRLKVQLKRS
Sbjct: 416 MFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRS 475
Query: 502 KNDSKPY 508
KNDSKPY
Sbjct: 476 KNDSKPY 482
>gi|71164871 CUG triplet repeat, RNA-binding protein 1 isoform 3
[Homo sapiens]
Length = 486
Score = 768 bits (1984), Expect = 0.0
Identities = 392/491 (79%), Positives = 435/491 (88%), Gaps = 12/491 (2%)
Query: 25 MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG 84
MNG LDH DQPD DAIKMFVGQ+PR+WSEK+L+ELFE YGAVY+INVLRDRSQNPPQSKG
Sbjct: 1 MNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKG 60
Query: 85 CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCN 144
CCFVTFYTRKAALEAQNALHN+K LPGMHHPIQMKPADSEK+NAVEDRKLFIGM+SKKC
Sbjct: 61 CCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCT 120
Query: 145 ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSP 204
ENDIRVMFS FGQIEECRILRGPDGLSRGCAFVTF+TRAMAQ AIKAMHQ+QTMEGCSSP
Sbjct: 121 ENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP 180
Query: 205 IVVKFADTQKDKEQRRLQQQLAQQMQQLNTAT-WGNLTGLGGLTPQYLA----LLQQATS 259
+VVKFADTQKDKEQ+R+ QQL QQMQQ++ A+ WGNL GL L PQYLA LLQQ S
Sbjct: 181 MVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTAS 240
Query: 260 SSNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPV 319
S NL S + M G+NA+QLQNLA LAAAA+AAQ + + TNA L+T+SS L LTS
Sbjct: 241 SGNLNTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNA--LTTSSSPLSVLTS-- 296
Query: 320 AASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAGMAALNGGLGATGLTNGTAGT 379
+ S+P+S++ ++N + SLG LQ LAGAT GL N+ +LAGMAALNGGLG++GL+NGT T
Sbjct: 297 SGSSPSSSSSNSVNPIASLGALQTLAGATAGL-NVGSLAGMAALNGGLGSSGLSNGTGST 355
Query: 380 MDALTQAYSGIQQYAAAALPTLYSQSLLQQQS--AAGSQKEGPEGANLFIYHLPQEFGDQ 437
M+ALTQAYSGIQQYAAAALPTLY+Q+LL QQS AAGSQKEGPEGANLFIYHLPQEFGDQ
Sbjct: 356 MEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQ 415
Query: 438 DILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQ 497
D+LQMFMPFGNV+SAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ+MNGFQIGMKRLKVQ
Sbjct: 416 DLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 475
Query: 498 LKRSKNDSKPY 508
LKRSKNDSKPY
Sbjct: 476 LKRSKNDSKPY 486
>gi|71164894 trinucleotide repeat containing 4 [Homo sapiens]
Length = 465
Score = 386 bits (992), Expect = e-107
Identities = 230/503 (45%), Positives = 293/503 (58%), Gaps = 70/503 (13%)
Query: 36 DPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKA 95
+PDAIK+FVGQIPR EK+LK +FE +G ++++ V++D+ KGC F+T+ R +
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTG--LHKGCAFLTYCARDS 60
Query: 96 ALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPF 155
AL+AQ+ALH KTLPGM+ PIQ+KPADSE EDRKLF+GM+ K+ + D+R MF PF
Sbjct: 61 ALKAQSALHEQKTLPGMNRPIQVKPADSESRG--EDRKLFVGMLGKQQTDEDVRKMFEPF 118
Query: 156 GQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 215
G I+EC +LRGPDG S+GCAFV F T A AQ AI +H S+T+ G SS +VVKFADT+K+
Sbjct: 119 GTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 178
Query: 216 KEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLGAFSG-----IQ 270
+ RR+QQ Q LG +P L GA+S +Q
Sbjct: 179 RGLRRMQQVATQ---------------LGMFSPIAL----------QFGAYSAYTQALMQ 213
Query: 271 QMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTT--SSALGALTSPVAASTPNSTA 328
Q A + A L+ +A AA + NAN L T + + G T P A+TP S
Sbjct: 214 QQAALVAAHSAYLSPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAI 273
Query: 329 GAAMNSLTSLGTLQGLAGATVGLNNINALAGMAALNGGLGATGLTNGTAGTMDALTQAYS 388
AA+ G+ G + AL A +D L QAY+
Sbjct: 274 PAAL----------GVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYA 323
Query: 389 GIQQYAAAALPTLYS-----------------------QSLLQQQSAAGSQKEGPEGANL 425
G+Q Y AA P YS Q QQQ Q+EGP+G N+
Sbjct: 324 GMQHYTAA-YPAAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNI 382
Query: 426 FIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMN 485
FIYHLPQEF D +ILQMF+PFG+VISAKVF+D+ TN SKCFGFVS+DNP SAQAAIQAMN
Sbjct: 383 FIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMN 442
Query: 486 GFQIGMKRLKVQLKRSKNDSKPY 508
GFQIGMKRLKVQLKR K+ ++PY
Sbjct: 443 GFQIGMKRLKVQLKRPKDANRPY 465
>gi|70780381 bruno-like 6, RNA binding protein [Homo sapiens]
Length = 481
Score = 377 bits (968), Expect = e-104
Identities = 233/486 (47%), Positives = 295/486 (60%), Gaps = 59/486 (12%)
Query: 36 DPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKA 95
D DAIK+FVGQIPR E++LK LFE +G +Y++ VL+DR KGC F+T+ R +
Sbjct: 42 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTG--LHKGCAFLTYCARDS 99
Query: 96 ALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPF 155
AL+AQ+ALH KTLPGM+ PIQ+KPA SE EDRKLF+GM+ K+ E D+R +F PF
Sbjct: 100 ALKAQSALHEQKTLPGMNRPIQVKPAASEGRG--EDRKLFVGMLGKQQGEEDVRRLFQPF 157
Query: 156 GQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 215
G IEEC +LR PDG S+GCAFV F ++ AQ AI+ +H S+TM G SS +VVK ADT ++
Sbjct: 158 GHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIRGLHGSRTMAGASSSLVVKLADTDRE 217
Query: 216 KEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGM 275
+ RR+QQ +A + + A LG A+LQ Q A +
Sbjct: 218 RALRRMQQ-MAGHLGAFHPAP----LPLGACGAYTTAILQH--------------QAALL 258
Query: 276 NALQLQNLATLAAAAAAAQ-TSATSTNANPLSTTSSALGALTSPVAASTPNSTAGAAMNS 334
A Q L +AA AA Q +A S A PL + A+ NS G+
Sbjct: 259 AAAQGPGLGPVAAVAAQMQHVAAFSLVAAPL-------------LPAAAANSPPGSGP-- 303
Query: 335 LTSLGTLQGLAGATVGLNNINALAGMAALNGGLGATGLTNG--------TAGTMDALTQA 386
GTL GL A +G+N L NG G+ L N + G D L QA
Sbjct: 304 ----GTLPGLP-APIGVNGFGPLTPQT--NGQPGSDTLYNNGLSPYPAQSPGVADPLQQA 356
Query: 387 YSGIQQYAAAALPTLY---SQSLLQQQSAAGSQ-KEGPEGANLFIYHLPQEFGDQDILQM 442
Y+G+ YAAA P+ Y S + QQ SA Q +EGPEG NLFIYHLPQEFGD +++Q
Sbjct: 357 YAGMHHYAAA-YPSAYAPVSTAFPQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQT 415
Query: 443 FMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSK 502
F+PFG V+SAKVF+D+ TN SKCFGFVS+DNP SAQ AIQAMNGFQIGMKRLKVQLKR K
Sbjct: 416 FLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPK 475
Query: 503 NDSKPY 508
+ ++PY
Sbjct: 476 DANRPY 481
Score = 43.1 bits (100), Expect = 6e-04
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 28 ALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCF 87
AL + P+ +F+ +P+ + + EL + F P+GAV V DR+ N QSK F
Sbjct: 384 ALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATN--QSKCFGF 441
Query: 88 VTFYTRKAALEAQNALHNIKTLPGMHH-PIQMK-PADSEK 125
V+F +A A A++ + GM +Q+K P D+ +
Sbjct: 442 VSFDNPTSAQTAIQAMNGFQI--GMKRLKVQLKRPKDANR 479
>gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo
sapiens]
Length = 485
Score = 372 bits (956), Expect = e-103
Identities = 239/538 (44%), Positives = 305/538 (56%), Gaps = 86/538 (15%)
Query: 2 RCPKSAVTMRNEELLLSNGTANKMNGALDHSDQPDP----DAIKMFVGQIPRSWSEKELK 57
R +S + ++LL + +G QPD DAIK+FVGQIPR EK+LK
Sbjct: 3 RLTESEARRQQQQLLQPRPSPVGSSGPEPPGGQPDGMKDLDAIKLFVGQIPRHLDEKDLK 62
Query: 58 ELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQ 117
LFE +G +Y++ VL+D KGC F+T+ R +A++AQ ALH KTLPGM PIQ
Sbjct: 63 PLFEQFGRIYELTVLKDPYTG--MHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQ 120
Query: 118 MKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFV 177
+KPADSE S DRKLF+GM++K+ +E D+ +F PFG I+EC +LRGPDG S+GCAFV
Sbjct: 121 VKPADSE-SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFV 179
Query: 178 TFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATW 237
FS+ AQ AI A+H SQTM G SS +VVKFADT K++ RR+QQ + Q
Sbjct: 180 KFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ---------- 229
Query: 238 GNLTGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSA 297
LG LTP L + A A QT+
Sbjct: 230 -----LGILTPSL--------------------------TLPFSPYSAYAQALMQQQTTV 258
Query: 298 TSTNANPLSTTSS-------ALGALTSPVAASTPNSTAGAAMNSLTSLGT--LQGLAGAT 348
ST+ + LS + +GA++ +TP + A + ++S LGT + GL
Sbjct: 259 LSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPA-SGLHSPPLLGTTAVPGLVAPI 317
Query: 349 VGLNNINALAGMAALNGGLGA--TGLTNG-------TAGTMDALTQAYSGIQQY-----A 394
N AG+ GG A T NG + + L A+SG+QQY
Sbjct: 318 T-----NGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAFSGVQQYTAMYPT 372
Query: 395 AAALPTLYS----QSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVI 450
AA P +S LLQQQ Q+EGPEG NLFIYHLPQEFGD ++ QMF+PFGN+I
Sbjct: 373 AAITPIAHSVPQPPPLLQQQ-----QREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNII 427
Query: 451 SAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 508
S+KVF+D+ TN SKCFGFVS+DNP SAQAAIQAMNGFQIGMKRLKVQLKR K+ PY
Sbjct: 428 SSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDPGHPY 485
>gi|187761299 bruno-like 4, RNA binding protein isoform 2 [Homo
sapiens]
Length = 485
Score = 361 bits (926), Expect = e-99
Identities = 228/517 (44%), Positives = 294/517 (56%), Gaps = 83/517 (16%)
Query: 18 SNGTANKMNGALDHSD-------QPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQIN 70
S G+A MNG L HS D DAIK+F+GQIPR+ EK+LK LFE +G +Y++
Sbjct: 26 SPGSAGHMNG-LSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELT 84
Query: 71 VLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAV- 129
VL+DR KGC F+T+ R++AL+AQ+ALH KTLPGM+ PIQ+KPADSE
Sbjct: 85 VLKDRFTG--MHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSS 142
Query: 130 -------EDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTR 182
+DRKLF+GM++K+ +E+D+R +F FG IEEC ILRGPDG S+GCAFV +S+
Sbjct: 143 CLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSH 202
Query: 183 AMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTG 242
A AQ AI A+H SQTM G SS +VVKFADT K++ RR+ QQ+A QM N
Sbjct: 203 AEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRM-QQMAGQMGMFNPMA----IP 257
Query: 243 LGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATL-AAAAAAAQTSATSTN 301
G A+ QQA +++ + MA A Q+Q +A L AAA + TS
Sbjct: 258 FGAYGAYAQAMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGG 317
Query: 302 ANPLSTTSSALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAGMA 361
+ P T+ A+ ++ SP+ + G G N A A
Sbjct: 318 STPPGITAPAVPSIPSPIG--------------------VNGFTGLPPQAN--GQPAAEA 355
Query: 362 ALNGGLGATGLTNGTAGTMDALTQAYSGIQQYAA-AALPTLYSQ---------SLLQQQS 411
G+ + TA D L QAY+G+QQYA AA P Y Q ++ QQ
Sbjct: 356 VFANGIHPYPAQSPTAA--DPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQ- 412
Query: 412 AAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSY 471
Q+EGPEG NLFIYHLPQEFGD +++QMF+P FGFVS+
Sbjct: 413 ----QREGPEGCNLFIYHLPQEFGDAELMQMFLP--------------------FGFVSF 448
Query: 472 DNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 508
DNP SAQ AIQAMNGFQIGMKRLKVQLKR K+ ++PY
Sbjct: 449 DNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 485
>gi|13123778 bruno-like 4, RNA binding protein isoform 1 [Homo
sapiens]
Length = 486
Score = 359 bits (922), Expect = 3e-99
Identities = 230/517 (44%), Positives = 296/517 (57%), Gaps = 82/517 (15%)
Query: 18 SNGTANKMNGALDHSD-------QPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQIN 70
S G+A MNG L HS D DAIK+F+GQIPR+ EK+LK LFE +G +Y++
Sbjct: 26 SPGSAGHMNG-LSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELT 84
Query: 71 VLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAV- 129
VL+DR KGC F+T+ R++AL+AQ+ALH KTLPGM+ PIQ+KPADSE
Sbjct: 85 VLKDRFTG--MHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSS 142
Query: 130 -------EDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTR 182
+DRKLF+GM++K+ +E+D+R +F FG IEEC ILRGPDG S+GCAFV +S+
Sbjct: 143 CLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSH 202
Query: 183 AMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTG 242
A AQ AI A+H SQTM G SS +VVKFADT K++ RR+ QQ+A QM N G
Sbjct: 203 AEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRM-QQMAGQMGMFNPMAIP--FG 259
Query: 243 LGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATL-AAAAAAAQTSATSTN 301
G Q L + QQA +++ + MA A Q+Q +A L AAA + TS
Sbjct: 260 AYGAYAQAL-MQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGG 318
Query: 302 ANPLSTTSSALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAGMA 361
+ P T+ A+ ++ SP+ + G G N A A
Sbjct: 319 STPPGITAPAVPSIPSPIG--------------------VNGFTGLPPQAN--GQPAAEA 356
Query: 362 ALNGGLGATGLTNGTAGTMDALTQAYSGIQQYAA-AALPTLYSQ---------SLLQQQS 411
G+ + TA D L QAY+G+QQYA AA P Y Q ++ QQ
Sbjct: 357 VFANGIHPYPAQSPTAA--DPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQ- 413
Query: 412 AAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSY 471
Q+EGPEG NLFIYHLPQEFGD +++QMF+P FGFVS+
Sbjct: 414 ----QREGPEGCNLFIYHLPQEFGDAELMQMFLP--------------------FGFVSF 449
Query: 472 DNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 508
DNP SAQ AIQAMNGFQIGMKRLKVQLKR K+ ++PY
Sbjct: 450 DNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 486
>gi|187761301 bruno-like 4, RNA binding protein isoform 3 [Homo
sapiens]
Length = 484
Score = 358 bits (918), Expect = 8e-99
Identities = 227/516 (43%), Positives = 292/516 (56%), Gaps = 82/516 (15%)
Query: 18 SNGTANKMNGALDHSD-------QPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQIN 70
S G+A MNG L HS D DAIK+F+GQIPR+ EK+LK LFE +G +Y++
Sbjct: 26 SPGSAGHMNG-LSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELT 84
Query: 71 VLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVE 130
VL+DR KGC F+T+ R++AL+AQ+ALH KTLPGM+ PIQ+KPADSE
Sbjct: 85 VLKDRFTG--MHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSS 142
Query: 131 -------DRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRA 183
RKLF+GM++K+ +E+D+R +F FG IEEC ILRGPDG S+GCAFV +S+ A
Sbjct: 143 CLRQPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHA 202
Query: 184 MAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGL 243
AQ AI A+H SQTM G SS +VVKFADT K++ RR+ QQ+A QM N
Sbjct: 203 EAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRM-QQMAGQMGMFNPMA----IPF 257
Query: 244 GGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATL-AAAAAAAQTSATSTNA 302
G A+ QQA +++ + MA A Q+Q +A L AAA + TS +
Sbjct: 258 GAYGAYAQAMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGS 317
Query: 303 NPLSTTSSALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAGMAA 362
P T+ A+ ++ SP+ + G G N A A
Sbjct: 318 TPPGITAPAVPSIPSPIG--------------------VNGFTGLPPQAN--GQPAAEAV 355
Query: 363 LNGGLGATGLTNGTAGTMDALTQAYSGIQQYAA-AALPTLYSQ---------SLLQQQSA 412
G+ + TA D L QAY+G+QQYA AA P Y Q ++ QQ
Sbjct: 356 FANGIHPYPAQSPTAA--DPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQ-- 411
Query: 413 AGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYD 472
Q+EGPEG NLFIYHLPQEFGD +++QMF+P FGFVS+D
Sbjct: 412 ---QREGPEGCNLFIYHLPQEFGDAELMQMFLP--------------------FGFVSFD 448
Query: 473 NPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 508
NP SAQ AIQAMNGFQIGMKRLKVQLKR K+ ++PY
Sbjct: 449 NPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 484
>gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo
sapiens]
Length = 448
Score = 304 bits (779), Expect = 1e-82
Identities = 208/500 (41%), Positives = 273/500 (54%), Gaps = 86/500 (17%)
Query: 18 SNGTANKMNGALDHSD-------QPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQIN 70
S G+A MNG L HS D DAIK+F+GQIPR+ EK+LK LFE +G +Y++
Sbjct: 26 SPGSAGHMNG-LSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELT 84
Query: 71 VLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVE 130
VL+DR KGC F+T+ R++AL+AQ+ALH KTLPGM+ PIQ+KPADSE E
Sbjct: 85 VLKDRFTG--MHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRG--E 140
Query: 131 DRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIK 190
DRKLF+GM++K+ +E+D+R +F FG IEEC ILRGPDG S+GCAFV +S+ A AQ AI
Sbjct: 141 DRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAIN 200
Query: 191 AMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQY 250
A+H SQTM G SS +VVKFADT K++ RR+QQ +A QM N G G Q
Sbjct: 201 ALHGSQTMPGASSSLVVKFADTDKERTMRRMQQ-MAGQMGMFNPMAIP--FGAYGAYAQA 257
Query: 251 LALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAA-AAAAAQTSATSTNANPLSTTS 309
L + QQA +++ + MA A Q+Q +A L AAA + TS + P T+
Sbjct: 258 L-MQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITA 316
Query: 310 SALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAGMAALNGGLGA 369
A+ ++ SP+ + G G N A + A G+
Sbjct: 317 PAVPSIPSPIGVN--------------------GFTGLPPQANGQPAAEAVFA--NGIHP 354
Query: 370 TGLTNGTAGTMDALTQAYSGIQQYAA-AALPTLYSQSLLQQQSAAGSQKEGPEGANLFIY 428
+ TA D L QAY+G+QQYA AA P Y Q + P+ +
Sbjct: 355 YPAQSPTAA--DPLQQAYAGVQQYAGPAAYPAAYGQ----------ISQAFPQPPPM--- 399
Query: 429 HLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQ 488
+PQ+ + GFVS+DNP SAQ AIQAMNGFQ
Sbjct: 400 -IPQQQRE------------------------------GFVSFDNPASAQTAIQAMNGFQ 428
Query: 489 IGMKRLKVQLKRSKNDSKPY 508
IGMKRLKVQLKR K+ ++PY
Sbjct: 429 IGMKRLKVQLKRPKDANRPY 448
>gi|225579097 bruno-like 5, RNA binding protein isoform 2 [Homo
sapiens]
Length = 320
Score = 147 bits (372), Expect = 2e-35
Identities = 124/350 (35%), Positives = 164/350 (46%), Gaps = 77/350 (22%)
Query: 112 MHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLS 171
M PIQ+KPADSE S DRKLF+GM++K+ +E D+ +F PFG I+EC +LRGPDG S
Sbjct: 1 MARPIQVKPADSE-SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSS 59
Query: 172 RGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQ 231
+GCAFV FS+ AQ AI A+H SQTM G SS +VVKFADT K++ RR+QQ + Q
Sbjct: 60 KGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ---- 115
Query: 232 LNTATWGNLTGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAA 291
LG LTP L + A A
Sbjct: 116 -----------LGILTPSL--------------------------TLPFSPYSAYAQALM 138
Query: 292 AAQTSATSTNANPLSTTSS-------ALGALTSPVAASTPNSTAGAAMNSLTSLGT--LQ 342
QT+ ST+ + LS + +GA++ +TP + A + ++S LGT +
Sbjct: 139 QQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPA-SGLHSPPLLGTTAVP 197
Query: 343 GLAGATVGLNNINALAGMAALNGGLGA--TGLTNG-------TAGTMDALTQAYSGIQQY 393
GL N AG+ GG A T NG + + L A+SG+QQY
Sbjct: 198 GLVAPIT-----NGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAFSGVQQY 252
Query: 394 -----AAAALPTLYS----QSLLQQQSAAGSQKEGPEG--ANLFIYHLPQ 432
AA P +S LLQQQ G + G + L YH Q
Sbjct: 253 TAMYPTAAITPIAHSVPQPPPLLQQQQREGVWRHGADADVPTLRQYHFLQ 302
Score = 64.3 bits (155), Expect = 2e-10
Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 41 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 100
K+FVG + + SE+++ LF+P+G + + VLR + SKGC FV F + A A
Sbjct: 21 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGS---SKGCAFVKFSSHTEAQAAI 77
Query: 101 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMV 139
+ALH +T+PG + +K AD++K + + +G +
Sbjct: 78 HALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQL 116
Score = 45.4 bits (106), Expect = 1e-04
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 409 QQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGF 468
Q A S+ G LF+ L ++ ++D+L++F PFG VI + SK F
Sbjct: 6 QVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAF 64
Query: 469 VSYDNPVSAQAAIQAMNGFQ 488
V + + AQAAI A++G Q
Sbjct: 65 VKFSSHTEAQAAIHALHGSQ 84
>gi|115511032 ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B) [Homo sapiens]
Length = 359
Score = 82.4 bits (202), Expect = 9e-16
Identities = 58/206 (28%), Positives = 99/206 (48%), Gaps = 9/206 (4%)
Query: 23 NKMNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQS 82
N + +D + D + V +P++ +++ELK LF G + ++RD+ QS
Sbjct: 23 NNCSSPVDSGNTEDSKT-NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITG--QS 79
Query: 83 KGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKK 142
G FV + K A +A N L+ ++ +P+ S ++ D L++ + K
Sbjct: 80 LGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS----SASIRDANLYVSGLPKT 135
Query: 143 CNENDIRVMFSPFGQIEECRILRGP-DGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGC 201
+ ++ +FS +G+I RIL G+SRG F+ F R A+ AIK ++ Q G
Sbjct: 136 MTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN-GQKPPGA 194
Query: 202 SSPIVVKFADTQKDKEQRRLQQQLAQ 227
+ PI VKFA+ K + + QL Q
Sbjct: 195 TEPITVKFANNPSQKTNQAILSQLYQ 220
Score = 61.2 bits (147), Expect = 2e-09
Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 411 SAAGSQKEGPEGAN--LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGF 468
S AG G G +F+Y+L + + + QMF PFG V + KV D TN K FGF
Sbjct: 262 SLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGF 321
Query: 469 VSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSK 502
V+ N A AI ++NG+++G + L+V K +K
Sbjct: 322 VTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 355
Score = 56.2 bits (134), Expect = 7e-08
Identities = 28/82 (34%), Positives = 45/82 (54%)
Query: 424 NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQA 483
NL + +LPQ +++ +F G + S K+ DK T S +GFV+Y +P A+ AI
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 484 MNGFQIGMKRLKVQLKRSKNDS 505
+NG ++ K +KV R + S
Sbjct: 100 LNGLRLQTKTIKVSYARPSSAS 121
Score = 54.7 bits (130), Expect = 2e-07
Identities = 20/64 (31%), Positives = 43/64 (67%)
Query: 423 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 482
ANL++ LP+ +++ Q+F +G +I++++ +D+ T +S+ GF+ +D + A+ AI+
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Query: 483 AMNG 486
+NG
Sbjct: 185 GLNG 188
Score = 31.2 bits (69), Expect = 2.3
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 42 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 101
+FV + E L ++F P+GAV + V+RD + N + KG FVT A A
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTN--KCKGFGFVTMTNYDEAAMAIA 335
Query: 102 ALHNIK 107
+L+ +
Sbjct: 336 SLNGYR 341
>gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens]
Length = 380
Score = 82.0 bits (201), Expect = 1e-15
Identities = 62/223 (27%), Positives = 104/223 (46%), Gaps = 19/223 (8%)
Query: 17 LSNG-TANKMNGALDHSDQ----------PDPDAIKMFVGQIPRSWSEKELKELFEPYGA 65
+SNG T+N NG ++ D + V +P++ +++E + LF G
Sbjct: 12 VSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGE 71
Query: 66 VYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEK 125
+ ++RD+ QS G FV + K A +A N L+ ++ +P+
Sbjct: 72 IESCKLVRDKITG--QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS---- 125
Query: 126 SNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGP-DGLSRGCAFVTFSTRAM 184
S ++ D L++ + K + ++ +FS +G+I RIL G+SRG F+ F R
Sbjct: 126 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE 185
Query: 185 AQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQ 227
A+ AIK ++ Q G + PI VKFA+ K + L QL Q
Sbjct: 186 AEEAIKGLN-GQKPSGATEPITVKFANNPSQKSSQALLSQLYQ 227
Score = 58.2 bits (139), Expect = 2e-08
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 425 LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM 484
+F+Y+L + + + Q+F PFG V + KV D TN K FGFV+ N A AI ++
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 485 NGFQIGMKRLKVQLKRSK 502
NG+++G + L+V K +K
Sbjct: 359 NGYRLGDRVLQVSFKTNK 376
Score = 55.5 bits (132), Expect = 1e-07
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 424 NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQA 483
NL + +LPQ ++ +F G + S K+ DK T S +GFV+Y +P A+ AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 484 MNGFQIGMKRLKVQLKRSKNDS 505
+NG ++ K +KV R + S
Sbjct: 107 LNGLRLQTKTIKVSYARPSSAS 128
Score = 55.1 bits (131), Expect = 2e-07
Identities = 23/84 (27%), Positives = 51/84 (60%)
Query: 423 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 482
ANL++ LP+ +++ Q+F +G +I++++ +D+ T +S+ GF+ +D + A+ AI+
Sbjct: 132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191
Query: 483 AMNGFQIGMKRLKVQLKRSKNDSK 506
+NG + + +K + N S+
Sbjct: 192 GLNGQKPSGATEPITVKFANNPSQ 215
Score = 32.3 bits (72), Expect = 1.0
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 42 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 101
+FV + E L +LF P+GAV + V+RD + N + KG FVT A A
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTN--KCKGFGFVTMTNYDEAAMAIA 356
Query: 102 ALHNIK 107
+L+ +
Sbjct: 357 SLNGYR 362
>gi|38201714 ELAV-like 1 [Homo sapiens]
Length = 326
Score = 82.0 bits (201), Expect = 1e-15
Identities = 62/204 (30%), Positives = 94/204 (46%), Gaps = 11/204 (5%)
Query: 26 NGALDHSDQP---DPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQS 82
NG DH + D + V +P++ ++ EL+ LF G V ++RD+ S
Sbjct: 3 NGYEDHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAG--HS 60
Query: 83 KGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKK 142
G FV + T K A A N L+ ++ +P+ S ++D L+I + +
Sbjct: 61 LGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPS----SEVIKDANLYISGLPRT 116
Query: 143 CNENDIRVMFSPFGQIEECRIL-RGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGC 201
+ D+ MFS FG+I R+L GLSRG AF+ F R+ A+ AI + + G
Sbjct: 117 MTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFN-GHKPPGS 175
Query: 202 SSPIVVKFADTQKDKEQRRLQQQL 225
S PI VKFA + L QL
Sbjct: 176 SEPITVKFAANPNQNKNVALLSQL 199
Score = 63.5 bits (153), Expect = 4e-10
Identities = 34/79 (43%), Positives = 49/79 (62%)
Query: 425 LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM 484
+FIY+L Q+ + + QMF PFG V + KV D TN K FGFV+ N A AI ++
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 485 NGFQIGMKRLKVQLKRSKN 503
NG+++G K L+V K +K+
Sbjct: 306 NGYRLGDKILQVSFKTNKS 324
Score = 55.1 bits (131), Expect = 2e-07
Identities = 32/93 (34%), Positives = 49/93 (52%)
Query: 394 AAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAK 453
A L L QS + S A E + ANL+I LP+ +D+ MF FG +I+++
Sbjct: 77 AINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSR 136
Query: 454 VFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNG 486
V +D+ T LS+ F+ +D A+ AI + NG
Sbjct: 137 VLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 53.1 bits (126), Expect = 6e-07
Identities = 27/81 (33%), Positives = 42/81 (51%)
Query: 424 NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQA 483
NL + +LPQ ++ +F G V SAK+ DK S +GFV+Y A+ AI
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 484 MNGFQIGMKRLKVQLKRSKND 504
+NG ++ K +KV R ++
Sbjct: 81 LNGLRLQSKTIKVSYARPSSE 101
Score = 31.6 bits (70), Expect = 1.8
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 42 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 101
+F+ + + E L ++F P+GAV + V+RD + N + KG FVT + A A
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTN--KCKGFGFVTMTNYEEAAMAIA 303
Query: 102 ALHNIK 107
+L+ +
Sbjct: 304 SLNGYR 309
>gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens]
Length = 369
Score = 82.0 bits (201), Expect = 1e-15
Identities = 62/223 (27%), Positives = 104/223 (46%), Gaps = 19/223 (8%)
Query: 17 LSNG-TANKMNGALDHSDQ----------PDPDAIKMFVGQIPRSWSEKELKELFEPYGA 65
+SNG T+N NG ++ D + V +P++ +++E + LF G
Sbjct: 15 VSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGE 74
Query: 66 VYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEK 125
+ ++RD+ QS G FV + K A +A N L+ ++ +P+
Sbjct: 75 IESCKLVRDKITG--QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS---- 128
Query: 126 SNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGP-DGLSRGCAFVTFSTRAM 184
S ++ D L++ + K + ++ +FS +G+I RIL G+SRG F+ F R
Sbjct: 129 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE 188
Query: 185 AQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQ 227
A+ AIK ++ Q G + PI VKFA+ K + L QL Q
Sbjct: 189 AEEAIKGLN-GQKPSGATEPITVKFANNPSQKSSQALLSQLYQ 230
Score = 58.2 bits (139), Expect = 2e-08
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 425 LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM 484
+F+Y+L + + + Q+F PFG V + KV D TN K FGFV+ N A AI ++
Sbjct: 288 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 347
Query: 485 NGFQIGMKRLKVQLKRSK 502
NG+++G + L+V K +K
Sbjct: 348 NGYRLGDRVLQVSFKTNK 365
Score = 55.5 bits (132), Expect = 1e-07
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 424 NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQA 483
NL + +LPQ ++ +F G + S K+ DK T S +GFV+Y +P A+ AI
Sbjct: 50 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 109
Query: 484 MNGFQIGMKRLKVQLKRSKNDS 505
+NG ++ K +KV R + S
Sbjct: 110 LNGLRLQTKTIKVSYARPSSAS 131
Score = 55.1 bits (131), Expect = 2e-07
Identities = 23/84 (27%), Positives = 51/84 (60%)
Query: 423 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 482
ANL++ LP+ +++ Q+F +G +I++++ +D+ T +S+ GF+ +D + A+ AI+
Sbjct: 135 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 194
Query: 483 AMNGFQIGMKRLKVQLKRSKNDSK 506
+NG + + +K + N S+
Sbjct: 195 GLNGQKPSGATEPITVKFANNPSQ 218
Score = 32.3 bits (72), Expect = 1.0
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 42 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 101
+FV + E L +LF P+GAV + V+RD + N + KG FVT A A
Sbjct: 288 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTN--KCKGFGFVTMTNYDEAAMAIA 345
Query: 102 ALHNIK 107
+L+ +
Sbjct: 346 SLNGYR 351
>gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens]
Length = 366
Score = 82.0 bits (201), Expect = 1e-15
Identities = 62/223 (27%), Positives = 104/223 (46%), Gaps = 19/223 (8%)
Query: 17 LSNG-TANKMNGALDHSDQ----------PDPDAIKMFVGQIPRSWSEKELKELFEPYGA 65
+SNG T+N NG ++ D + V +P++ +++E + LF G
Sbjct: 12 VSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGE 71
Query: 66 VYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEK 125
+ ++RD+ QS G FV + K A +A N L+ ++ +P+
Sbjct: 72 IESCKLVRDKITG--QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS---- 125
Query: 126 SNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGP-DGLSRGCAFVTFSTRAM 184
S ++ D L++ + K + ++ +FS +G+I RIL G+SRG F+ F R
Sbjct: 126 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE 185
Query: 185 AQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQ 227
A+ AIK ++ Q G + PI VKFA+ K + L QL Q
Sbjct: 186 AEEAIKGLN-GQKPSGATEPITVKFANNPSQKSSQALLSQLYQ 227
Score = 58.2 bits (139), Expect = 2e-08
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 425 LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM 484
+F+Y+L + + + Q+F PFG V + KV D TN K FGFV+ N A AI ++
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 485 NGFQIGMKRLKVQLKRSK 502
NG+++G + L+V K +K
Sbjct: 345 NGYRLGDRVLQVSFKTNK 362
Score = 55.5 bits (132), Expect = 1e-07
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 424 NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQA 483
NL + +LPQ ++ +F G + S K+ DK T S +GFV+Y +P A+ AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 484 MNGFQIGMKRLKVQLKRSKNDS 505
+NG ++ K +KV R + S
Sbjct: 107 LNGLRLQTKTIKVSYARPSSAS 128
Score = 55.1 bits (131), Expect = 2e-07
Identities = 23/84 (27%), Positives = 51/84 (60%)
Query: 423 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 482
ANL++ LP+ +++ Q+F +G +I++++ +D+ T +S+ GF+ +D + A+ AI+
Sbjct: 132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191
Query: 483 AMNGFQIGMKRLKVQLKRSKNDSK 506
+NG + + +K + N S+
Sbjct: 192 GLNGQKPSGATEPITVKFANNPSQ 215
Score = 32.3 bits (72), Expect = 1.0
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 42 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 101
+FV + E L +LF P+GAV + V+RD + N + KG FVT A A
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTN--KCKGFGFVTMTNYDEAAMAIA 342
Query: 102 ALHNIK 107
+L+ +
Sbjct: 343 SLNGYR 348
>gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens]
Length = 383
Score = 82.0 bits (201), Expect = 1e-15
Identities = 62/223 (27%), Positives = 104/223 (46%), Gaps = 19/223 (8%)
Query: 17 LSNG-TANKMNGALDHSDQ----------PDPDAIKMFVGQIPRSWSEKELKELFEPYGA 65
+SNG T+N NG ++ D + V +P++ +++E + LF G
Sbjct: 29 VSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGE 88
Query: 66 VYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEK 125
+ ++RD+ QS G FV + K A +A N L+ ++ +P+
Sbjct: 89 IESCKLVRDKITG--QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS---- 142
Query: 126 SNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGP-DGLSRGCAFVTFSTRAM 184
S ++ D L++ + K + ++ +FS +G+I RIL G+SRG F+ F R
Sbjct: 143 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE 202
Query: 185 AQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQ 227
A+ AIK ++ Q G + PI VKFA+ K + L QL Q
Sbjct: 203 AEEAIKGLN-GQKPSGATEPITVKFANNPSQKSSQALLSQLYQ 244
Score = 58.2 bits (139), Expect = 2e-08
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 425 LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM 484
+F+Y+L + + + Q+F PFG V + KV D TN K FGFV+ N A AI ++
Sbjct: 302 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 361
Query: 485 NGFQIGMKRLKVQLKRSK 502
NG+++G + L+V K +K
Sbjct: 362 NGYRLGDRVLQVSFKTNK 379
Score = 55.5 bits (132), Expect = 1e-07
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 424 NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQA 483
NL + +LPQ ++ +F G + S K+ DK T S +GFV+Y +P A+ AI
Sbjct: 64 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 123
Query: 484 MNGFQIGMKRLKVQLKRSKNDS 505
+NG ++ K +KV R + S
Sbjct: 124 LNGLRLQTKTIKVSYARPSSAS 145
Score = 55.1 bits (131), Expect = 2e-07
Identities = 23/84 (27%), Positives = 51/84 (60%)
Query: 423 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 482
ANL++ LP+ +++ Q+F +G +I++++ +D+ T +S+ GF+ +D + A+ AI+
Sbjct: 149 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 208
Query: 483 AMNGFQIGMKRLKVQLKRSKNDSK 506
+NG + + +K + N S+
Sbjct: 209 GLNGQKPSGATEPITVKFANNPSQ 232
Score = 32.3 bits (72), Expect = 1.0
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 42 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 101
+FV + E L +LF P+GAV + V+RD + N + KG FVT A A
Sbjct: 302 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTN--KCKGFGFVTMTNYDEAAMAIA 359
Query: 102 ALHNIK 107
+L+ +
Sbjct: 360 SLNGYR 365
>gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens]
Length = 366
Score = 82.0 bits (201), Expect = 1e-15
Identities = 62/223 (27%), Positives = 104/223 (46%), Gaps = 19/223 (8%)
Query: 17 LSNG-TANKMNGALDHSDQ----------PDPDAIKMFVGQIPRSWSEKELKELFEPYGA 65
+SNG T+N NG ++ D + V +P++ +++E + LF G
Sbjct: 12 VSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGE 71
Query: 66 VYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEK 125
+ ++RD+ QS G FV + K A +A N L+ ++ +P+
Sbjct: 72 IESCKLVRDKITG--QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS---- 125
Query: 126 SNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGP-DGLSRGCAFVTFSTRAM 184
S ++ D L++ + K + ++ +FS +G+I RIL G+SRG F+ F R
Sbjct: 126 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE 185
Query: 185 AQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQ 227
A+ AIK ++ Q G + PI VKFA+ K + L QL Q
Sbjct: 186 AEEAIKGLN-GQKPSGATEPITVKFANNPSQKSSQALLSQLYQ 227
Score = 58.2 bits (139), Expect = 2e-08
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 425 LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM 484
+F+Y+L + + + Q+F PFG V + KV D TN K FGFV+ N A AI ++
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 485 NGFQIGMKRLKVQLKRSK 502
NG+++G + L+V K +K
Sbjct: 345 NGYRLGDRVLQVSFKTNK 362
Score = 55.5 bits (132), Expect = 1e-07
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 424 NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQA 483
NL + +LPQ ++ +F G + S K+ DK T S +GFV+Y +P A+ AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 484 MNGFQIGMKRLKVQLKRSKNDS 505
+NG ++ K +KV R + S
Sbjct: 107 LNGLRLQTKTIKVSYARPSSAS 128
Score = 55.1 bits (131), Expect = 2e-07
Identities = 23/84 (27%), Positives = 51/84 (60%)
Query: 423 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 482
ANL++ LP+ +++ Q+F +G +I++++ +D+ T +S+ GF+ +D + A+ AI+
Sbjct: 132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191
Query: 483 AMNGFQIGMKRLKVQLKRSKNDSK 506
+NG + + +K + N S+
Sbjct: 192 GLNGQKPSGATEPITVKFANNPSQ 215
Score = 32.3 bits (72), Expect = 1.0
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 42 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 101
+FV + E L +LF P+GAV + V+RD + N + KG FVT A A
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTN--KCKGFGFVTMTNYDEAAMAIA 342
Query: 102 ALHNIK 107
+L+ +
Sbjct: 343 SLNGYR 348
>gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]
Length = 367
Score = 79.0 bits (193), Expect = 1e-14
Identities = 61/212 (28%), Positives = 99/212 (46%), Gaps = 14/212 (6%)
Query: 17 LSNGTANKMNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRS 76
L NG NGA D S + V +P++ ++ E K LF G + ++RD+
Sbjct: 22 LPNGPLLGTNGATDDSKT------NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKI 75
Query: 77 QNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFI 136
QS G FV + A +A N L+ +K +P+ S ++ D L++
Sbjct: 76 TG--QSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPS----SASIRDANLYV 129
Query: 137 GMVSKKCNENDIRVMFSPFGQIEECRILRGP-DGLSRGCAFVTFSTRAMAQNAIKAMHQS 195
+ K ++ ++ +FS +G+I RIL G+SRG F+ F R A+ AIK ++
Sbjct: 130 SGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
Query: 196 QTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQ 227
+ + G + PI VKFA+ K + L L Q
Sbjct: 190 KPL-GAAEPITVKFANNPSQKTGQALLTHLYQ 220
Score = 67.0 bits (162), Expect = 4e-11
Identities = 92/393 (23%), Positives = 156/393 (39%), Gaps = 76/393 (19%)
Query: 126 SNAVEDRK--LFIGMVSKKCNENDIRVMFSPFGQIEECRILRGP-DGLSRGCAFVTFSTR 182
+ A +D K L + + + +++ + +F G IE C+++R G S G FV +S
Sbjct: 31 NGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDP 90
Query: 183 AMAQNAIKAMH----QSQTME---GCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTA 235
A AI ++ Q++T++ S ++ A+ + + Q+ +M+QL
Sbjct: 91 NDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQK---EMEQL--- 144
Query: 236 TWGNLTGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQ-LQNLATLAAAAAAAQ 294
+ G + + + Q S +G +++ A++ L L AA
Sbjct: 145 ----FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITV 200
Query: 295 TSATSTNANPLSTTSSALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNI 354
A NP T AL + + S+ AG ++ T L L G+ +
Sbjct: 201 KFAN----NPSQKTGQAL---LTHLYQSSARRYAGP-LHHQTQRFRLDNLLNMAYGVKSP 252
Query: 355 NALAGM---AALNG--GLGATGLTNGTAGTMDALTQAYSGIQQYAAAALPTLYSQSLLQQ 409
+L A++G GL GL+ G AG
Sbjct: 253 LSLIARFSPIAIDGMSGLAGVGLSGGAAGA------------------------------ 282
Query: 410 QSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFV 469
G +F+Y+L E + + Q+F PFG V + KV D TN K FGFV
Sbjct: 283 ------------GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFV 330
Query: 470 SYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSK 502
+ N A AI ++NG+++G + L+V K SK
Sbjct: 331 TMTNYDEAAMAIASLNGYRLGERVLQVSFKTSK 363
Score = 56.2 bits (134), Expect = 7e-08
Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 399 PTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDK 458
P L + LL A K NL + +LPQ + +F G++ S K+ DK
Sbjct: 20 PALPNGPLLGTNGATDDSK-----TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDK 74
Query: 459 QTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDS 505
T S +GFV+Y +P A AI +NG ++ K +KV R + S
Sbjct: 75 ITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSAS 121
Score = 32.3 bits (72), Expect = 1.0
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 42 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 101
+FV + E L +LF P+GAV + V+RD + N + KG FVT A A
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTN--KCKGFGFVTMTNYDEAAMAIA 343
Query: 102 ALHNIK 107
+L+ +
Sbjct: 344 SLNGYR 349
>gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]
Length = 360
Score = 79.0 bits (193), Expect = 1e-14
Identities = 61/212 (28%), Positives = 99/212 (46%), Gaps = 14/212 (6%)
Query: 17 LSNGTANKMNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRS 76
L NG NGA D S + V +P++ ++ E K LF G + ++RD+
Sbjct: 22 LPNGPLLGTNGATDDSKT------NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKI 75
Query: 77 QNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFI 136
QS G FV + A +A N L+ +K +P+ S ++ D L++
Sbjct: 76 TG--QSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPS----SASIRDANLYV 129
Query: 137 GMVSKKCNENDIRVMFSPFGQIEECRILRGP-DGLSRGCAFVTFSTRAMAQNAIKAMHQS 195
+ K ++ ++ +FS +G+I RIL G+SRG F+ F R A+ AIK ++
Sbjct: 130 SGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
Query: 196 QTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQ 227
+ + G + PI VKFA+ K + L L Q
Sbjct: 190 KPL-GAAEPITVKFANNPSQKTGQALLTHLYQ 220
Score = 69.7 bits (169), Expect = 6e-12
Identities = 92/390 (23%), Positives = 155/390 (39%), Gaps = 77/390 (19%)
Query: 126 SNAVEDRK--LFIGMVSKKCNENDIRVMFSPFGQIEECRILRGP-DGLSRGCAFVTFSTR 182
+ A +D K L + + + +++ + +F G IE C+++R G S G FV +S
Sbjct: 31 NGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDP 90
Query: 183 AMAQNAIKAMH----QSQTME---GCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTA 235
A AI ++ Q++T++ S ++ A+ + + Q+ +M+QL
Sbjct: 91 NDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQK---EMEQL--- 144
Query: 236 TWGNLTGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQ-LQNLATLAAAAAAAQ 294
+ G + + + Q S +G +++ A++ L L AA
Sbjct: 145 ----FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITV 200
Query: 295 TSATSTNANPLSTTSSALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNI 354
A NP T AL + + S+ AG ++ T L L G+
Sbjct: 201 KFAN----NPSQKTGQAL---LTHLYQSSARRYAGP-LHHQTQRFRLDNLLNMAYGVKRF 252
Query: 355 NALA--GMAALNGGLGATGLTNGTAGTMDALTQAYSGIQQYAAAALPTLYSQSLLQQQSA 412
+ +A GM+ GL GL+ G AG
Sbjct: 253 SPIAIDGMS----GLAGVGLSGGAAGA--------------------------------- 275
Query: 413 AGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYD 472
G +F+Y+L E + + Q+F PFG V + KV D TN K FGFV+
Sbjct: 276 ---------GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMT 326
Query: 473 NPVSAQAAIQAMNGFQIGMKRLKVQLKRSK 502
N A AI ++NG+++G + L+V K SK
Sbjct: 327 NYDEAAMAIASLNGYRLGERVLQVSFKTSK 356
Score = 56.2 bits (134), Expect = 7e-08
Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 399 PTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDK 458
P L + LL A K NL + +LPQ + +F G++ S K+ DK
Sbjct: 20 PALPNGPLLGTNGATDDSK-----TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDK 74
Query: 459 QTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDS 505
T S +GFV+Y +P A AI +NG ++ K +KV R + S
Sbjct: 75 ITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSAS 121
Score = 32.3 bits (72), Expect = 1.0
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 42 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 101
+FV + E L +LF P+GAV + V+RD + N + KG FVT A A
Sbjct: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTN--KCKGFGFVTMTNYDEAAMAIA 336
Query: 102 ALHNIK 107
+L+ +
Sbjct: 337 SLNGYR 342
>gi|187960109 RNA binding motif protein 28 [Homo sapiens]
Length = 759
Score = 70.9 bits (172), Expect = 3e-12
Identities = 53/180 (29%), Positives = 79/180 (43%), Gaps = 28/180 (15%)
Query: 40 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 99
+ +FVG++P S ++L+ELF G V Q V+ ++ SK C + T +
Sbjct: 4 LTLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKG-----SKACRGFGYVTFSMLEDV 58
Query: 100 QNALHNIKTLPGMHHPIQM---------------------KPADSEKSNAVEDRK--LFI 136
Q AL I T G + + K K V D+K L I
Sbjct: 59 QRALKEITTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLII 118
Query: 137 GMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQ 196
+S KC+E+D++ +F+ FG + E I R PDG RG FV F A A+K M+ +
Sbjct: 119 RNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKE 178
Score = 38.5 bits (88), Expect = 0.015
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 126 SNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPD-GLSRGCAFVTFSTRAM 184
S+ E + +FI +S E ++ + FG+++ RI+ PD S+GCAF F T+
Sbjct: 329 SDVNEGKTVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEA 388
Query: 185 AQNAIKA 191
AQ + A
Sbjct: 389 AQKCLLA 395
Score = 37.7 bits (86), Expect = 0.025
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 134 LFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLS-RGCAFVTFSTRAMAQNAIKAM 192
LF+G + + +FS G +++C ++ + RG +VTFS M ++ +A+
Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFS---MLEDVQRAL 62
Query: 193 HQSQTMEGCSSPIVV---KFADTQKDK 216
+ T EGC + V K + K+K
Sbjct: 63 KEITTFEGCKINVTVAKKKLRNKTKEK 89
Score = 34.3 bits (77), Expect = 0.28
Identities = 20/85 (23%), Positives = 39/85 (45%)
Query: 422 GANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAI 481
G LF+ LP + + ++F G V V +K + + FG+V++ Q A+
Sbjct: 3 GLTLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRAL 62
Query: 482 QAMNGFQIGMKRLKVQLKRSKNDSK 506
+ + F+ + V K+ +N +K
Sbjct: 63 KEITTFEGCKINVTVAKKKLRNKTK 87
Score = 34.3 bits (77), Expect = 0.28
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 408 QQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFG 467
+++ A K + A L I +L + + D+ +F FG V+ + K + FG
Sbjct: 99 KKEPKAKKAKVADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNI-PRKPDGKMRGFG 157
Query: 468 FVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSK 506
FV + N + A A++ MN +I + + V +K+ K
Sbjct: 158 FVQFKNLLEAGKALKGMNMKEIKGRTVAVDWAVAKDKYK 196
Score = 31.6 bits (70), Expect = 1.8
Identities = 19/91 (20%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 421 EGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 480
EG +FI +L + ++++ ++ FG + ++ + T SK F + +AQ
Sbjct: 333 EGKTVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKC 392
Query: 481 IQAMN------GFQIGMKRLKVQLKRSKNDS 505
+ A + G ++ ++LKV L +++++
Sbjct: 393 LLAASPENEAGGLKLDGRQLKVDLAVTRDEA 423
Score = 31.6 bits (70), Expect = 1.8
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 42 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA 96
+F+ + E+EL EL + +G + + ++ + SKGC F F T++AA
Sbjct: 337 VFIRNLSFDSEEEELGELLQQFGELKYVRIVLH--PDTEHSKGCAFAQFMTQEAA 389
>gi|93277070 RNA binding motif protein 45 [Homo sapiens]
Length = 474
Score = 69.3 bits (168), Expect = 8e-12
Identities = 59/220 (26%), Positives = 93/220 (42%), Gaps = 21/220 (9%)
Query: 18 SNGTANKMNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQ 77
S+ + +D D+P I + + + E L+E F P+G + I V+RD+
Sbjct: 6 SSASGGGFRPGVDSLDEPPNSRIFLVISKYT---PESVLRERFSPFGDIQDIWVVRDK-- 60
Query: 78 NPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNA---VEDRKL 134
+ +SKG FV F A A +H P PI++ A S S + VED +L
Sbjct: 61 HTKESKGIAFVKFARSSQACRAMEEMHGQCLGPNDTKPIKVFIAQSRSSGSHRDVEDEEL 120
Query: 135 --FIGMVSKKCNENDIRVMFSPFGQIEECRILRGP-DGLSRGCAFVTFSTRAMAQNAIKA 191
M+ K E D+R F +G IE C I++ G S+G +V + +K
Sbjct: 121 TRIFVMIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRY---------LKP 171
Query: 192 MHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQ 231
+Q +E C A+ K+K +Q M+Q
Sbjct: 172 SQAAQAIENCDRSFRAILAE-PKNKASESSEQDYYSNMRQ 210
Score = 34.3 bits (77), Expect = 0.28
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 421 EGANLFIYHLPQEFGDQDIL-QMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQA 479
E N I+ + ++ + +L + F PFG++ V DK T SK FV + A
Sbjct: 22 EPPNSRIFLVISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACR 81
Query: 480 AIQAMNGFQIG---MKRLKVQLKRSKN 503
A++ M+G +G K +KV + +S++
Sbjct: 82 AMEEMHGQCLGPNDTKPIKVFIAQSRS 108
Score = 32.7 bits (73), Expect = 0.80
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 418 EGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSA 477
E P LFI P + +F FGN+I + K G+ Y + +SA
Sbjct: 385 ETPVKERLFIVFNPHPLPLDVLEDIFCRFGNLIEVYLVSGKNV------GYAKYADRISA 438
Query: 478 QAAIQAMNGFQIGMKRLKVQLKRSKND 504
AI ++G + RLKV L S +
Sbjct: 439 NDAIATLHGKILNGVRLKVMLADSPRE 465
>gi|51317355 RNA binding motif, single stranded interacting protein
3 isoform 1 [Homo sapiens]
Length = 437
Score = 68.9 bits (167), Expect = 1e-11
Identities = 76/335 (22%), Positives = 133/335 (39%), Gaps = 38/335 (11%)
Query: 18 SNGTANKMNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQ 77
S T + N + ++S +++ +P ++++L +L +PYG + + D++
Sbjct: 39 SPSTNSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNT 98
Query: 78 NPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIG 137
N Q KG FV F + AA Q A+ ++K + +Q + A ++ + L+I
Sbjct: 99 N--QCKGYGFVDFDSPAAA---QKAVASLKA-----NGVQAQMAKQQEQDPTN---LYIS 145
Query: 138 MVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAI-----KAM 192
+ +E ++ M PFG + RILR +G+SRG F + + I K +
Sbjct: 146 NLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYL 205
Query: 193 HQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLA 252
+ S P++ KFAD + K Q Q N W G +A
Sbjct: 206 KTPPGIPAPSEPLLCKFADGGQKKRQN-------QSKYTQNGRPWPREGEAG------MA 252
Query: 253 LLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLST-TSSA 311
L T++ G +S +A + ++ AA+ + ST+ P
Sbjct: 253 LTYDPTAAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQVQSTSWMPHPPYVMQP 312
Query: 312 LGALTSPVAASTPNSTAGAAMNSLT------SLGT 340
GA+ +P + M LT SLGT
Sbjct: 313 TGAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGT 347
Score = 67.8 bits (164), Expect = 2e-11
Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 5/115 (4%)
Query: 385 QAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFM 444
Q+Y+ A P+ S S +++G Q NL+I LP DQD++++
Sbjct: 26 QSYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSK---TNLYIRGLPPGTTDQDLIKLCQ 82
Query: 445 PFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM--NGFQIGMKRLKVQ 497
P+G ++S K +DK TN K +GFV +D+P +AQ A+ ++ NG Q M + + Q
Sbjct: 83 PYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQ 137
Score = 43.9 bits (102), Expect = 3e-04
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 409 QQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGF 468
Q A Q++ P NL+I +LP +Q++ M PFG+VIS ++ D +S+ GF
Sbjct: 128 QAQMAKQQEQDP--TNLYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGF 184
Query: 469 VSYDNPVSAQAAIQAMNG 486
++ + IQ NG
Sbjct: 185 ARMESTEKCEVVIQHFNG 202
>gi|51317351 RNA binding motif, single stranded interacting protein
3 isoform 2 [Homo sapiens]
Length = 420
Score = 68.9 bits (167), Expect = 1e-11
Identities = 76/335 (22%), Positives = 133/335 (39%), Gaps = 38/335 (11%)
Query: 18 SNGTANKMNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQ 77
S T + N + ++S +++ +P ++++L +L +PYG + + D++
Sbjct: 39 SPSTNSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNT 98
Query: 78 NPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIG 137
N Q KG FV F + AA Q A+ ++K + +Q + A ++ + L+I
Sbjct: 99 N--QCKGYGFVDFDSPAAA---QKAVASLKA-----NGVQAQMAKQQEQDPTN---LYIS 145
Query: 138 MVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAI-----KAM 192
+ +E ++ M PFG + RILR +G+SRG F + + I K +
Sbjct: 146 NLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYL 205
Query: 193 HQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLA 252
+ S P++ KFAD + K Q Q N W G +A
Sbjct: 206 KTPPGIPAPSEPLLCKFADGGQKKRQN-------QSKYTQNGRPWPREGEAG------MA 252
Query: 253 LLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLST-TSSA 311
L T++ G +S +A + ++ AA+ + ST+ P
Sbjct: 253 LTYDPTAAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQVQSTSWMPHPPYVMQP 312
Query: 312 LGALTSPVAASTPNSTAGAAMNSLT------SLGT 340
GA+ +P + M LT SLGT
Sbjct: 313 TGAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGT 347
Score = 67.8 bits (164), Expect = 2e-11
Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 5/115 (4%)
Query: 385 QAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFM 444
Q+Y+ A P+ S S +++G Q NL+I LP DQD++++
Sbjct: 26 QSYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSK---TNLYIRGLPPGTTDQDLIKLCQ 82
Query: 445 PFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM--NGFQIGMKRLKVQ 497
P+G ++S K +DK TN K +GFV +D+P +AQ A+ ++ NG Q M + + Q
Sbjct: 83 PYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQ 137
Score = 43.9 bits (102), Expect = 3e-04
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 409 QQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGF 468
Q A Q++ P NL+I +LP +Q++ M PFG+VIS ++ D +S+ GF
Sbjct: 128 QAQMAKQQEQDP--TNLYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGF 184
Query: 469 VSYDNPVSAQAAIQAMNG 486
++ + IQ NG
Sbjct: 185 ARMESTEKCEVVIQHFNG 202
>gi|51317353 RNA binding motif, single stranded interacting protein
3 isoform 3 [Homo sapiens]
Length = 419
Score = 68.2 bits (165), Expect = 2e-11
Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 384 TQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMF 443
T++Y+ A P+ S S +++G Q NL+I LP DQD++++
Sbjct: 24 TKSYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSK---TNLYIRGLPPGTTDQDLIKLC 80
Query: 444 MPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM--NGFQIGMKRLKVQ 497
P+G ++S K +DK TN K +GFV +D+P +AQ A+ ++ NG Q M + + Q
Sbjct: 81 QPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQ 136
Score = 67.4 bits (163), Expect = 3e-11
Identities = 70/308 (22%), Positives = 128/308 (41%), Gaps = 35/308 (11%)
Query: 18 SNGTANKMNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQ 77
S T + N + ++S +++ +P ++++L +L +PYG + + D++
Sbjct: 38 SPSTNSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNT 97
Query: 78 NPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIG 137
N Q KG FV F + AA Q A+ ++K + +Q + A ++ + L+I
Sbjct: 98 N--QCKGYGFVDFDSPAAA---QKAVASLKA-----NGVQAQMAKQQEQDPTN---LYIS 144
Query: 138 MVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAI-----KAM 192
+ +E ++ M PFG + RILR +G+SRG F + + I K +
Sbjct: 145 NLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYL 204
Query: 193 HQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLA 252
+ S P++ KFAD + K Q Q N W G +A
Sbjct: 205 KTPPGIPAPSEPLLCKFADGGQKKRQN-------QSKYTQNGRPWPREGEAG------MA 251
Query: 253 LLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSA---TSTNANPLS-TT 308
L T++ G +S +A + ++ AA+ + T T +P+S
Sbjct: 252 LTYDPTAAIQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQGAVITPTMDHPMSMQP 311
Query: 309 SSALGALT 316
++ +G LT
Sbjct: 312 ANMMGPLT 319
Score = 43.9 bits (102), Expect = 3e-04
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 409 QQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGF 468
Q A Q++ P NL+I +LP +Q++ M PFG+VIS ++ D +S+ GF
Sbjct: 127 QAQMAKQQEQDP--TNLYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGF 183
Query: 469 VSYDNPVSAQAAIQAMNG 486
++ + IQ NG
Sbjct: 184 ARMESTEKCEVVIQHFNG 201
>gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens]
Length = 375
Score = 67.4 bits (163), Expect = 3e-11
Identities = 56/218 (25%), Positives = 96/218 (44%), Gaps = 15/218 (6%)
Query: 42 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 101
++VG + R +E + +LF G ++ + + N P CFV FY + A A
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPY----CFVEFYEHRDAAAALA 66
Query: 102 ALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEEC 161
A++ K L S+K + +F+G +S + DI+ F+PFG+I +
Sbjct: 67 AMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDA 126
Query: 162 RILRG-PDGLSRGCAFVTFSTRAMAQNAIKAM-------HQSQTMEGCSSPIVVKFADTQ 213
R+++ G S+G FV+F + A+NAI M Q +T P K + +
Sbjct: 127 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPK-STQE 185
Query: 214 KDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYL 251
+ +Q R + + Q + T G + GLT Q +
Sbjct: 186 NNTKQLRFEDVVNQSSPKNCTVYCGGIA--SGLTDQLM 221
Score = 62.4 bits (150), Expect = 9e-10
Identities = 64/254 (25%), Positives = 114/254 (44%), Gaps = 45/254 (17%)
Query: 20 GTANKMNGALDHSDQPDPDA--IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQ 77
G K+N A S Q + +FVG + + +++K F P+G + V++D +
Sbjct: 75 GKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMAT 134
Query: 78 NPPQSKGCCFVTFYTRKAALEAQNAL----------HNIKTLPGMHHPI----------- 116
+SKG FV+FY + L+A+NA+ I+T P
Sbjct: 135 G--KSKGYGFVSFYNK---LDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTK 189
Query: 117 QMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAF 176
Q++ D ++ ++ ++ G ++ + +R FSPFGQI E R+ +G +F
Sbjct: 190 QLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP-----EKGYSF 244
Query: 177 VTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTAT 236
V FST A +AI +++ T+EG VVK ++ + + + QQ++ +
Sbjct: 245 VRFSTHESAAHAIVSVN-GTTIEG----HVVKCYWGKESPD-------MTKNFQQVDYSQ 292
Query: 237 WGNLTGLGGLTPQY 250
WG + + G QY
Sbjct: 293 WGQWSQVYGNPQQY 306
Score = 54.7 bits (130), Expect = 2e-07
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 7/109 (6%)
Query: 394 AAAALPTLYSQSLLQQQ-------SAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPF 446
AAAAL + + +L ++ + + +K+ ++F+ L E +DI F PF
Sbjct: 61 AAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPF 120
Query: 447 GNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLK 495
G + A+V D T SK +GFVS+ N + A+ AI M G +G ++++
Sbjct: 121 GKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 169
Score = 35.8 bits (81), Expect = 0.095
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 425 LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM 484
L++ +L ++ + ILQ+F G S K+ + +N C FV + A AA+ AM
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYC--FVEFYEHRDAAAALAAM 68
Query: 485 NGFQIGMKRLKVQLKRSKNDSK 506
NG +I K +KV + + K
Sbjct: 69 NGRKILGKEVKVNWATTPSSQK 90
Score = 33.5 bits (75), Expect = 0.47
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 417 KEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVS 476
+ P+ ++ + DQ + Q F PFG ++ +VF +K + FV + S
Sbjct: 199 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG------YSFVRFSTHES 252
Query: 477 AQAAIQAMNGFQI 489
A AI ++NG I
Sbjct: 253 AAHAIVSVNGTTI 265
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.127 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,997,019
Number of Sequences: 37866
Number of extensions: 691118
Number of successful extensions: 5633
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 202
Number of HSP's that attempted gapping in prelim test: 3891
Number of HSP's gapped (non-prelim): 1484
length of query: 508
length of database: 18,247,518
effective HSP length: 107
effective length of query: 401
effective length of database: 14,195,856
effective search space: 5692538256
effective search space used: 5692538256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.