Guide to the Human Genome
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Name: CSNK1A1 Sequence: fasta or formatted (365aa) NCBI GI: 68303575
Description:

casein kinase 1, alpha 1 isoform 1

Referenced in:

Additional Serine / Threonine Protein Kinases

Other entries for this name:
alt prot [337aa] casein kinase 1, alpha 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         20           2
 C cysteine            1.4          5           1
 D aspartate           4.7         17           2
 E glutamate           4.9         18           2
 F phenylalanine       4.9         18           1
 G glycine             7.4         27           2
 H histidine           2.2          8           1
 I isoleucine          5.2         19           1
 K lysine              8.8         32           2
 L leucine             9.3         34           2
 M methionine          3.8         14           1
 N asparagine          4.1         15           1
 P proline             3.3         12           1
 Q glutamine           5.8         21           2
 R arginine            6.3         23           2
 S serine              7.4         27           3
 T threonine           5.2         19           1
 V valine              3.8         14           1
 W tryptophan          0.8          3           1
 Y tyrosine            5.2         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   casein kinase 1, alpha 1 isoform 1 
CSNK1A1               0.902   casein kinase 1, alpha 1 isoform 2 
CSNK1A1L              0.830   casein kinase 1, alpha 1-like 
CSNK1E                0.609   casein kinase 1 epsilon 
CSNK1E                0.609   casein kinase 1 epsilon 
CSNK1D                0.606   casein kinase 1, delta isoform 2 
CSNK1D                0.606   casein kinase 1, delta isoform 1 
CSNK1G2               0.416   casein kinase 1, gamma 2 
CSNK1G3               0.416   casein kinase 1, gamma 3 isoform 4 
CSNK1G3               0.416   casein kinase 1, gamma 3 isoform 3 
CSNK1G3               0.416   casein kinase 1, gamma 3 isoform 2 
CSNK1G3               0.416   casein kinase 1, gamma 3 isoform 1 
CSNK1G1               0.415   casein kinase 1, gamma 1 
TTBK1                 0.190   tau tubulin kinase 1 
TTBK2                 0.182   tau tubulin kinase 2 
VRK1                  0.116   vaccinia related kinase 1 
VRK2                  0.110   vaccinia related kinase 2 isoform 3 
VRK2                  0.110   vaccinia related kinase 2 isoform 1 
VRK2                  0.110   vaccinia related kinase 2 isoform 1 
VRK2                  0.110   vaccinia related kinase 2 isoform 1 
VRK2                  0.109   vaccinia related kinase 2 isoform 2 
VRK2                  0.085   vaccinia related kinase 2 isoform 6 
MARK4                 0.053   MAP/microtubule affinity-regulating kinase 4 
CSNK2A2               0.049   casein kinase 2, alpha prime polypeptide 
MARK3                 0.047   MAP/microtubule affinity-regulating kinase 3 isofor...
MARK3                 0.047   MAP/microtubule affinity-regulating kinase 3 isofor...
MARK3                 0.047   MAP/microtubule affinity-regulating kinase 3 isofor...
MARK3                 0.047   MAP/microtubule affinity-regulating kinase 3 isoform...
MARK1                 0.043   MAP/microtubule affinity-regulating kinase 1 
STK4                  0.042   serine/threonine kinase 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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