Guide to the Human Genome
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Name: CSNK1A1 Sequence: fasta or formatted (337aa) NCBI GI: 68303572
Description:

casein kinase 1, alpha 1 isoform 2

Referenced in:

Additional Serine / Threonine Protein Kinases

Other entries for this name:
alt prot [365aa] casein kinase 1, alpha 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         20           2
 C cysteine            1.2          4           1
 D aspartate           4.7         16           2
 E glutamate           5.0         17           2
 F phenylalanine       5.0         17           1
 G glycine             7.4         25           2
 H histidine           2.4          8           1
 I isoleucine          5.6         19           1
 K lysine              8.9         30           2
 L leucine             9.5         32           2
 M methionine          3.9         13           1
 N asparagine          4.2         14           1
 P proline             3.0         10           1
 Q glutamine           5.6         19           2
 R arginine            6.2         21           2
 S serine              6.2         21           3
 T threonine           5.0         17           1
 V valine              3.6         12           1
 W tryptophan          0.9          3           1
 Y tyrosine            5.6         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   casein kinase 1, alpha 1 isoform 2 
CSNK1A1               0.977   casein kinase 1, alpha 1 isoform 1 
CSNK1A1L              0.921   casein kinase 1, alpha 1-like 
CSNK1E                0.682   casein kinase 1 epsilon 
CSNK1E                0.682   casein kinase 1 epsilon 
CSNK1D                0.679   casein kinase 1, delta isoform 2 
CSNK1D                0.679   casein kinase 1, delta isoform 1 
CSNK1G1               0.464   casein kinase 1, gamma 1 
CSNK1G3               0.464   casein kinase 1, gamma 3 isoform 4 
CSNK1G3               0.464   casein kinase 1, gamma 3 isoform 3 
CSNK1G3               0.464   casein kinase 1, gamma 3 isoform 2 
CSNK1G3               0.464   casein kinase 1, gamma 3 isoform 1 
CSNK1G2               0.460   casein kinase 1, gamma 2 
TTBK1                 0.222   tau tubulin kinase 1 
TTBK2                 0.213   tau tubulin kinase 2 
VRK1                  0.138   vaccinia related kinase 1 
VRK2                  0.133   vaccinia related kinase 2 isoform 3 
VRK2                  0.133   vaccinia related kinase 2 isoform 1 
VRK2                  0.133   vaccinia related kinase 2 isoform 1 
VRK2                  0.133   vaccinia related kinase 2 isoform 1 
VRK2                  0.132   vaccinia related kinase 2 isoform 2 
VRK2                  0.106   vaccinia related kinase 2 isoform 6 
VRK3                  0.070   vaccinia related kinase 3 isoform 2 
VRK3                  0.070   vaccinia related kinase 3 isoform 1 
CSNK2A2               0.068   casein kinase 2, alpha prime polypeptide 
MARK4                 0.065   MAP/microtubule affinity-regulating kinase 4 
MARK3                 0.061   MAP/microtubule affinity-regulating kinase 3 isofor...
MARK3                 0.061   MAP/microtubule affinity-regulating kinase 3 isofor...
MARK3                 0.061   MAP/microtubule affinity-regulating kinase 3 isofor...
MARK3                 0.061   MAP/microtubule affinity-regulating kinase 3 isoform...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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