Guide to the Human Genome
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Name: VRK2 Sequence: fasta or formatted (508aa) NCBI GI: 194440709
Description:

vaccinia related kinase 2 isoform 1

Referenced in:

Additional Serine / Threonine Protein Kinases

Other entries for this name:
alt mRNA [508aa] vaccinia related kinase 2 isoform 1
alt prot [485aa] vaccinia related kinase 2 isoform 2
alt prot [396aa] vaccinia related kinase 2 isoform 3
alt prot [390aa] vaccinia related kinase 2 isoform 6
alt mRNA [508aa] vaccinia related kinase 2 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         24           2
 C cysteine            1.6          8           2
 D aspartate           4.1         21           2
 E glutamate           6.7         34           2
 F phenylalanine       4.1         21           2
 G glycine             6.3         32           2
 H histidine           2.4         12           1
 I isoleucine          5.1         26           3
 K lysine              9.1         46           2
 L leucine            10.2         52           3
 M methionine          1.6          8           1
 N asparagine          5.1         26           2
 P proline             5.7         29           2
 Q glutamine           5.5         28           1
 R arginine            3.9         20           3
 S serine              7.3         37           2
 T threonine           4.5         23           1
 V valine              5.3         27           2
 W tryptophan          1.6          8           1
 Y tyrosine            5.1         26           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   vaccinia related kinase 2 isoform 1 
VRK2                  1.000   vaccinia related kinase 2 isoform 1 
VRK2                  1.000   vaccinia related kinase 2 isoform 1 
VRK2                  0.952   vaccinia related kinase 2 isoform 2 
VRK2                  0.774   vaccinia related kinase 2 isoform 3 
VRK2                  0.759   vaccinia related kinase 2 isoform 6 
VRK1                  0.316   vaccinia related kinase 1 
VRK3                  0.164   vaccinia related kinase 3 isoform 2 
VRK3                  0.164   vaccinia related kinase 3 isoform 1 
CSNK1E                0.096   casein kinase 1 epsilon 
CSNK1E                0.096   casein kinase 1 epsilon 
CSNK1D                0.095   casein kinase 1, delta isoform 2 
CSNK1D                0.095   casein kinase 1, delta isoform 1 
CSNK1A1               0.086   casein kinase 1, alpha 1 isoform 2 
CSNK1G3               0.081   casein kinase 1, gamma 3 isoform 4 
CSNK1G3               0.081   casein kinase 1, gamma 3 isoform 1 
CSNK1A1L              0.079   casein kinase 1, alpha 1-like 
CSNK1A1               0.078   casein kinase 1, alpha 1 isoform 1 
CSNK1G3               0.077   casein kinase 1, gamma 3 isoform 3 
CSNK1G3               0.077   casein kinase 1, gamma 3 isoform 2 
TTBK1                 0.074   tau tubulin kinase 1 
CSNK1G2               0.074   casein kinase 1, gamma 2 
CSNK1G1               0.071   casein kinase 1, gamma 1 
TTBK2                 0.070   tau tubulin kinase 2 
MAP3K1                0.042   mitogen-activated protein kinase kinase kinase 1 [H...
MAP3K3                0.033   mitogen-activated protein kinase kinase kinase 3 iso...
MAP3K3                0.033   mitogen-activated protein kinase kinase kinase 3 iso...
MAP3K2                0.030   mitogen-activated protein kinase kinase kinase 2 [Ho...
NEK5                  0.030   NIMA-related kinase 5 
AURKA                 0.027   serine/threonine protein kinase 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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