Guide to the Human Genome
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Name: VRK2 Sequence: fasta or formatted (485aa) NCBI GI: 194440711
Description:

vaccinia related kinase 2 isoform 2

Referenced in:

Additional Serine / Threonine Protein Kinases

Other entries for this name:
alt prot [508aa] vaccinia related kinase 2 isoform 1
alt prot [508aa] vaccinia related kinase 2 isoform 1
alt prot [396aa] vaccinia related kinase 2 isoform 3
alt prot [390aa] vaccinia related kinase 2 isoform 6
alt prot [508aa] vaccinia related kinase 2 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         24           2
 C cysteine            1.6          8           2
 D aspartate           3.9         19           1
 E glutamate           6.6         32           2
 F phenylalanine       4.1         20           2
 G glycine             6.4         31           2
 H histidine           2.5         12           1
 I isoleucine          5.2         25           3
 K lysine              8.7         42           2
 L leucine            10.3         50           3
 M methionine          1.4          7           1
 N asparagine          5.2         25           2
 P proline             4.9         24           1
 Q glutamine           5.8         28           1
 R arginine            3.9         19           3
 S serine              7.6         37           2
 T threonine           4.7         23           1
 V valine              5.4         26           2
 W tryptophan          1.6          8           1
 Y tyrosine            5.2         25           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   vaccinia related kinase 2 isoform 2 
VRK2                  1.000   vaccinia related kinase 2 isoform 1 
VRK2                  1.000   vaccinia related kinase 2 isoform 1 
VRK2                  1.000   vaccinia related kinase 2 isoform 1 
VRK2                  0.797   vaccinia related kinase 2 isoform 6 
VRK2                  0.763   vaccinia related kinase 2 isoform 3 
VRK1                  0.323   vaccinia related kinase 1 
VRK3                  0.164   vaccinia related kinase 3 isoform 2 
VRK3                  0.164   vaccinia related kinase 3 isoform 1 
CSNK1E                0.101   casein kinase 1 epsilon 
CSNK1E                0.101   casein kinase 1 epsilon 
CSNK1D                0.100   casein kinase 1, delta isoform 2 
CSNK1D                0.100   casein kinase 1, delta isoform 1 
CSNK1A1               0.090   casein kinase 1, alpha 1 isoform 2 
CSNK1G3               0.086   casein kinase 1, gamma 3 isoform 4 
CSNK1G3               0.086   casein kinase 1, gamma 3 isoform 1 
CSNK1A1L              0.084   casein kinase 1, alpha 1-like 
CSNK1A1               0.080   casein kinase 1, alpha 1 isoform 1 
CSNK1G3               0.080   casein kinase 1, gamma 3 isoform 3 
CSNK1G3               0.080   casein kinase 1, gamma 3 isoform 2 
TTBK1                 0.077   tau tubulin kinase 1 
CSNK1G2               0.077   casein kinase 1, gamma 2 
CSNK1G1               0.074   casein kinase 1, gamma 1 
TTBK2                 0.073   tau tubulin kinase 2 
MAP3K1                0.044   mitogen-activated protein kinase kinase kinase 1 [H...
MAP3K3                0.035   mitogen-activated protein kinase kinase kinase 3 iso...
MAP3K3                0.035   mitogen-activated protein kinase kinase kinase 3 iso...
MAP3K2                0.032   mitogen-activated protein kinase kinase kinase 2 [Ho...
NEK5                  0.032   NIMA-related kinase 5 
MAP3K4                0.029   mitogen-activated protein kinase kinase kinase 4 iso...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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