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Search of human proteins with 66363688
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|66363688 NEDD8 activating enzyme E1 subunit 1 isoform c
[Homo sapiens]
(445 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|66363688 NEDD8 activating enzyme E1 subunit 1 isoform c [Homo... 894 0.0
gi|66363686 NEDD8 activating enzyme E1 subunit 1 isoform b [Homo... 894 0.0
gi|4502169 NEDD8 activating enzyme E1 subunit 1 isoform a [Homo ... 894 0.0
gi|4885585 SUMO1 activating enzyme subunit 1 isoform a [Homo sap... 48 2e-05
gi|150417996 ubiquitin-activating enzyme E1-like 2 [Homo sapiens] 48 2e-05
gi|7705473 SUMO1 activating enzyme subunit 1 isoform a [Homo sap... 47 3e-05
gi|23510338 ubiquitin-activating enzyme E1 [Homo sapiens] 39 0.010
gi|23510340 ubiquitin-activating enzyme E1 [Homo sapiens] 39 0.010
gi|71274148 pleckstrin homology domain containing, family G (wit... 32 1.2
gi|170763513 ATP/GTP binding protein 1 [Homo sapiens] 31 2.0
gi|111548666 SNF2 histone linker PHD RING helicase isoform a [Ho... 31 2.6
gi|27436873 SNF2 histone linker PHD RING helicase isoform b [Hom... 31 2.6
gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens] 30 4.4
gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens] 30 4.4
gi|38373673 synaptonemal complex protein 2 [Homo sapiens] 30 4.4
gi|44890065 hypothetical protein LOC6936 [Homo sapiens] 29 7.5
gi|8923009 non-SMC element 4 homolog A [Homo sapiens] 29 7.5
gi|239757293 PREDICTED: hypothetical protein XP_002345244 [Homo ... 29 9.9
gi|239751798 PREDICTED: hypothetical protein XP_002347989 [Homo ... 29 9.9
gi|239746289 PREDICTED: hypothetical protein XP_002343688 [Homo ... 29 9.9
gi|62526045 zinc finger protein 638 [Homo sapiens] 29 9.9
gi|21626468 zinc finger protein 638 [Homo sapiens] 29 9.9
>gi|66363688 NEDD8 activating enzyme E1 subunit 1 isoform c [Homo
sapiens]
Length = 445
Score = 894 bits (2311), Expect = 0.0
Identities = 445/445 (100%), Positives = 445/445 (100%)
Query: 1 MEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIP 60
MEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIP
Sbjct: 1 MEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIP 60
Query: 61 LLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHFQSYDLDHMEKKDH 120
LLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHFQSYDLDHMEKKDH
Sbjct: 61 LLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHFQSYDLDHMEKKDH 120
Query: 121 SHTPWIVIIAKYLAQWYSETNGRIPKTYKEKEDFRDLIRQGILKNENGAPEDEENFEEAI 180
SHTPWIVIIAKYLAQWYSETNGRIPKTYKEKEDFRDLIRQGILKNENGAPEDEENFEEAI
Sbjct: 121 SHTPWIVIIAKYLAQWYSETNGRIPKTYKEKEDFRDLIRQGILKNENGAPEDEENFEEAI 180
Query: 181 KNVNTALNTTQIPSSIEDIFNDDRCINITKQTPSFWILARALKEFVAKEGQGNLPVRGTI 240
KNVNTALNTTQIPSSIEDIFNDDRCINITKQTPSFWILARALKEFVAKEGQGNLPVRGTI
Sbjct: 181 KNVNTALNTTQIPSSIEDIFNDDRCINITKQTPSFWILARALKEFVAKEGQGNLPVRGTI 240
Query: 241 PDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAF 300
PDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAF
Sbjct: 241 PDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAF 300
Query: 301 LRVVRCRSLAEEYGLDTINKDEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQ 360
LRVVRCRSLAEEYGLDTINKDEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQ
Sbjct: 301 LRVVRCRSLAEEYGLDTINKDEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQ 360
Query: 361 VEEDIGKLKSCLTGFLQEYGLSVMVKDDYVHEFCRYGAAEPHTIAAFLGGAAAQEVIKII 420
VEEDIGKLKSCLTGFLQEYGLSVMVKDDYVHEFCRYGAAEPHTIAAFLGGAAAQEVIKII
Sbjct: 361 VEEDIGKLKSCLTGFLQEYGLSVMVKDDYVHEFCRYGAAEPHTIAAFLGGAAAQEVIKII 420
Query: 421 TKQFVIFNNTYIYSGMSQTSATFQL 445
TKQFVIFNNTYIYSGMSQTSATFQL
Sbjct: 421 TKQFVIFNNTYIYSGMSQTSATFQL 445
>gi|66363686 NEDD8 activating enzyme E1 subunit 1 isoform b [Homo
sapiens]
Length = 528
Score = 894 bits (2311), Expect = 0.0
Identities = 445/445 (100%), Positives = 445/445 (100%)
Query: 1 MEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIP 60
MEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIP
Sbjct: 84 MEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIP 143
Query: 61 LLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHFQSYDLDHMEKKDH 120
LLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHFQSYDLDHMEKKDH
Sbjct: 144 LLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHFQSYDLDHMEKKDH 203
Query: 121 SHTPWIVIIAKYLAQWYSETNGRIPKTYKEKEDFRDLIRQGILKNENGAPEDEENFEEAI 180
SHTPWIVIIAKYLAQWYSETNGRIPKTYKEKEDFRDLIRQGILKNENGAPEDEENFEEAI
Sbjct: 204 SHTPWIVIIAKYLAQWYSETNGRIPKTYKEKEDFRDLIRQGILKNENGAPEDEENFEEAI 263
Query: 181 KNVNTALNTTQIPSSIEDIFNDDRCINITKQTPSFWILARALKEFVAKEGQGNLPVRGTI 240
KNVNTALNTTQIPSSIEDIFNDDRCINITKQTPSFWILARALKEFVAKEGQGNLPVRGTI
Sbjct: 264 KNVNTALNTTQIPSSIEDIFNDDRCINITKQTPSFWILARALKEFVAKEGQGNLPVRGTI 323
Query: 241 PDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAF 300
PDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAF
Sbjct: 324 PDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAF 383
Query: 301 LRVVRCRSLAEEYGLDTINKDEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQ 360
LRVVRCRSLAEEYGLDTINKDEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQ
Sbjct: 384 LRVVRCRSLAEEYGLDTINKDEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQ 443
Query: 361 VEEDIGKLKSCLTGFLQEYGLSVMVKDDYVHEFCRYGAAEPHTIAAFLGGAAAQEVIKII 420
VEEDIGKLKSCLTGFLQEYGLSVMVKDDYVHEFCRYGAAEPHTIAAFLGGAAAQEVIKII
Sbjct: 444 VEEDIGKLKSCLTGFLQEYGLSVMVKDDYVHEFCRYGAAEPHTIAAFLGGAAAQEVIKII 503
Query: 421 TKQFVIFNNTYIYSGMSQTSATFQL 445
TKQFVIFNNTYIYSGMSQTSATFQL
Sbjct: 504 TKQFVIFNNTYIYSGMSQTSATFQL 528
>gi|4502169 NEDD8 activating enzyme E1 subunit 1 isoform a [Homo
sapiens]
Length = 534
Score = 894 bits (2311), Expect = 0.0
Identities = 445/445 (100%), Positives = 445/445 (100%)
Query: 1 MEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIP 60
MEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIP
Sbjct: 90 MEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIP 149
Query: 61 LLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHFQSYDLDHMEKKDH 120
LLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHFQSYDLDHMEKKDH
Sbjct: 150 LLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHFQSYDLDHMEKKDH 209
Query: 121 SHTPWIVIIAKYLAQWYSETNGRIPKTYKEKEDFRDLIRQGILKNENGAPEDEENFEEAI 180
SHTPWIVIIAKYLAQWYSETNGRIPKTYKEKEDFRDLIRQGILKNENGAPEDEENFEEAI
Sbjct: 210 SHTPWIVIIAKYLAQWYSETNGRIPKTYKEKEDFRDLIRQGILKNENGAPEDEENFEEAI 269
Query: 181 KNVNTALNTTQIPSSIEDIFNDDRCINITKQTPSFWILARALKEFVAKEGQGNLPVRGTI 240
KNVNTALNTTQIPSSIEDIFNDDRCINITKQTPSFWILARALKEFVAKEGQGNLPVRGTI
Sbjct: 270 KNVNTALNTTQIPSSIEDIFNDDRCINITKQTPSFWILARALKEFVAKEGQGNLPVRGTI 329
Query: 241 PDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAF 300
PDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAF
Sbjct: 330 PDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAF 389
Query: 301 LRVVRCRSLAEEYGLDTINKDEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQ 360
LRVVRCRSLAEEYGLDTINKDEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQ
Sbjct: 390 LRVVRCRSLAEEYGLDTINKDEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQ 449
Query: 361 VEEDIGKLKSCLTGFLQEYGLSVMVKDDYVHEFCRYGAAEPHTIAAFLGGAAAQEVIKII 420
VEEDIGKLKSCLTGFLQEYGLSVMVKDDYVHEFCRYGAAEPHTIAAFLGGAAAQEVIKII
Sbjct: 450 VEEDIGKLKSCLTGFLQEYGLSVMVKDDYVHEFCRYGAAEPHTIAAFLGGAAAQEVIKII 509
Query: 421 TKQFVIFNNTYIYSGMSQTSATFQL 445
TKQFVIFNNTYIYSGMSQTSATFQL
Sbjct: 510 TKQFVIFNNTYIYSGMSQTSATFQL 534
>gi|4885585 SUMO1 activating enzyme subunit 1 isoform a [Homo
sapiens]
Length = 346
Score = 48.1 bits (113), Expect = 2e-05
Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 272 VAKLLQSIGQAPESISEKELKLLCSNSAFLR--VVRCRSLAEEYGLDTINKDEIISSMDN 329
VAK+ Q + P++ K KL S + ++ VV C + E +D + ++ +++
Sbjct: 181 VAKVSQGVEDGPDT---KRAKLDSSETTMVKKKVVFC-PVKEALEVDW-SSEKAKAALKR 235
Query: 330 PDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSVMVKDDY 389
++ Y +L+ + +F +GR P Y EED L L G+S D
Sbjct: 236 TTSD---YFLLQVLLKFRTDKGRDPSSDTY--EEDSELLLQIRNDVLDSLGIS---PDLL 287
Query: 390 VHEFCRYGAAEPHTIAAFLGGAAAQEVIKIITKQFVIFNNTYIYSGM 436
+F RY +E + A +GG AQE++K ++++ NN + + GM
Sbjct: 288 PEDFVRYCFSEMAPVCAVVGGILAQEIVKALSQRDPPHNNFFFFDGM 334
>gi|150417996 ubiquitin-activating enzyme E1-like 2 [Homo sapiens]
Length = 1052
Score = 48.1 bits (113), Expect = 2e-05
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 323 IISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLS 382
+I NP+ + ++ + A+D+F ++ R P V Q E++ KL + ++ L+E
Sbjct: 312 LIVDFSNPEAPLEIHTAMLALDQFQEKYSRKPNVGCQQDSEELLKLATSISETLEE---K 368
Query: 383 VMVKDDYVHEFCRYGAAEPHTIAAFLGGAAAQEVIKIITKQF 424
V D VH +AA +GG A+QEV+K +T +F
Sbjct: 369 PDVNADIVHWLSWTAQGFLSPLAAAVGGVASQEVLKAVTGKF 410
>gi|7705473 SUMO1 activating enzyme subunit 1 isoform a [Homo
sapiens]
Length = 346
Score = 47.4 bits (111), Expect = 3e-05
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 337 YLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSVMVKDDYVHEFCRY 396
Y +L+ + +F +GR P Y EED L L G+S D +F RY
Sbjct: 240 YFLLQVLLKFRTDKGRDPSSDTY--EEDSELLLQIRNDVLDSLGIS---PDLLPEDFVRY 294
Query: 397 GAAEPHTIAAFLGGAAAQEVIKIITKQFVIFNNTYIYSGM 436
+E + A +GG AQE++K ++++ NN + + GM
Sbjct: 295 CFSEMAPVCAVVGGILAQEIVKALSQRDPPHNNFFFFDGM 334
Score = 29.3 bits (64), Expect = 7.5
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
Query: 1 MEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIP 60
+E Q LN V V+ E++ SFF +F V T +++ + + I
Sbjct: 96 LERAQNLNPMVD---VKVDTEDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQICHKNSIK 152
Query: 61 LLICRTYGLVGYMRIIIKEHPVIESHPDNA 90
+G GY + EH +E D A
Sbjct: 153 FFTGDAFGYHGYTFANLGEHEFVEEETDVA 182
>gi|23510338 ubiquitin-activating enzyme E1 [Homo sapiens]
Length = 1058
Score = 38.9 bits (89), Expect = 0.010
Identities = 42/220 (19%), Positives = 87/220 (39%), Gaps = 22/220 (10%)
Query: 223 KEFVAKEGQGNLPVRGTIPDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQA 282
+E + + G P+ + + D+ + + R + + V +++ G
Sbjct: 204 EEMILTDSNGEQPLSAMVSMVTKDNPGVVTCLDEARHGFESGDFVSFSEVQGMVELNGNQ 263
Query: 283 PESISEKELKLL-------CSNSAFLRVVRCRSLAEEYGLDTINKDEIISSMDNPDNEIV 335
P E+K+L C S F +R +++ I+ +++S+ PD +
Sbjct: 264 P-----MEIKVLGPYTFSICDTSNFSDYIRGGIVSQVKVPKKISFKSLVASLAEPDFVVT 318
Query: 336 ----------LYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSVMV 385
L++ +A+ +F Q GR P N + ++ L + +
Sbjct: 319 DFAKFSRPAQLHIGFQALHQFCAQHGRPPRPRNEEDAAELVALAQAVNARALPAVQQNNL 378
Query: 386 KDDYVHEFCRYGAAEPHTIAAFLGGAAAQEVIKIITKQFV 425
+D + + A + I AF+GG AAQEV+K + +F+
Sbjct: 379 DEDLIRKLAYVAAGDLAPINAFIGGLAAQEVMKACSGKFM 418
>gi|23510340 ubiquitin-activating enzyme E1 [Homo sapiens]
Length = 1058
Score = 38.9 bits (89), Expect = 0.010
Identities = 42/220 (19%), Positives = 87/220 (39%), Gaps = 22/220 (10%)
Query: 223 KEFVAKEGQGNLPVRGTIPDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQA 282
+E + + G P+ + + D+ + + R + + V +++ G
Sbjct: 204 EEMILTDSNGEQPLSAMVSMVTKDNPGVVTCLDEARHGFESGDFVSFSEVQGMVELNGNQ 263
Query: 283 PESISEKELKLL-------CSNSAFLRVVRCRSLAEEYGLDTINKDEIISSMDNPDNEIV 335
P E+K+L C S F +R +++ I+ +++S+ PD +
Sbjct: 264 P-----MEIKVLGPYTFSICDTSNFSDYIRGGIVSQVKVPKKISFKSLVASLAEPDFVVT 318
Query: 336 ----------LYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSVMV 385
L++ +A+ +F Q GR P N + ++ L + +
Sbjct: 319 DFAKFSRPAQLHIGFQALHQFCAQHGRPPRPRNEEDAAELVALAQAVNARALPAVQQNNL 378
Query: 386 KDDYVHEFCRYGAAEPHTIAAFLGGAAAQEVIKIITKQFV 425
+D + + A + I AF+GG AAQEV+K + +F+
Sbjct: 379 DEDLIRKLAYVAAGDLAPINAFIGGLAAQEVMKACSGKFM 418
>gi|71274148 pleckstrin homology domain containing, family G (with
RhoGef domain) member 1 [Homo sapiens]
Length = 1385
Score = 32.0 bits (71), Expect = 1.2
Identities = 31/149 (20%), Positives = 64/149 (42%), Gaps = 26/149 (17%)
Query: 158 IRQGILKNENGAPE---DEENFEEAIKNVNTA-LNTTQIPSSIEDIFNDDRCINITKQTP 213
IRQ + + E DE++++ + + +++ LN+T++ C + T P
Sbjct: 538 IRQALFPSRRSPQENEDDEDDYQMFVPSFSSSDLNSTRL------------CEDSTSSRP 585
Query: 214 SFWILARALKEFVAKEGQGNLPVR--------GTIPDMIADSGKYIKLQNVYREKAKKDA 265
W + + E G+ VR T P I S + +LQN + + +++
Sbjct: 586 CSWHMGQM--ESTETSSSGHRIVRRASSAGESNTCPPEIGTSDRTRELQNSPKTEGQEEM 643
Query: 266 AAVGNHVAKLLQSIGQAPESISEKELKLL 294
G+ + + I ++IS ++LKL+
Sbjct: 644 TPFGSSIELTIDDIDHVYDNISYEDLKLM 672
>gi|170763513 ATP/GTP binding protein 1 [Homo sapiens]
Length = 1186
Score = 31.2 bits (69), Expect = 2.0
Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 15/116 (12%)
Query: 84 ESHPDNALEDLRL-DKPFPELREHFQSYDLDHMEKKDHSHTPWI--VIIAKYLAQWYSET 140
+ P +EDL++ + FPEL + FQ YDL E K + I+ + S
Sbjct: 369 QQEPGRTIEDLKMYEHLFPELVDDFQDYDLISKEPKPFVFEGKVRGPIVVPTAGEETSGN 428
Query: 141 NGRIPKTY------------KEKEDFRDLIRQGILKNENGAPEDEENFEEAIKNVN 184
+G + K ++K F DL ++ I N+ + + I +V+
Sbjct: 429 SGNLRKVVMKENISSKGDEGEKKSTFMDLAKEDIKDNDRTLQQQPGDQNRTISSVH 484
>gi|111548666 SNF2 histone linker PHD RING helicase isoform a [Homo
sapiens]
Length = 1687
Score = 30.8 bits (68), Expect = 2.6
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 21/78 (26%)
Query: 65 RTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHFQS--------------- 109
R + M ++I HP I L D RL++ +LREH+ S
Sbjct: 1077 RLHATHNLMELLIARHPGIPP----TLRDGRLEEEAKQLREHYMSKCNTEVAEAQQALYP 1132
Query: 110 --YDLDHMEKKDHSHTPW 125
+ +++K HS++PW
Sbjct: 1133 VQQTIHELQRKIHSNSPW 1150
>gi|27436873 SNF2 histone linker PHD RING helicase isoform b [Homo
sapiens]
Length = 1659
Score = 30.8 bits (68), Expect = 2.6
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 21/78 (26%)
Query: 65 RTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHFQS--------------- 109
R + M ++I HP I L D RL++ +LREH+ S
Sbjct: 1077 RLHATHNLMELLIARHPGIPP----TLRDGRLEEEAKQLREHYMSKCNTEVAEAQQALYP 1132
Query: 110 --YDLDHMEKKDHSHTPW 125
+ +++K HS++PW
Sbjct: 1133 VQQTIHELQRKIHSNSPW 1150
>gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]
Length = 3907
Score = 30.0 bits (66), Expect = 4.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 146 KTYKEKEDFRDLIRQGILKNENGAPEDEENFEEAIKNVNTAL 187
+ Y+E + +L+RQ ++ ED+E +E IK +N L
Sbjct: 1596 RQYQEHQQATELLRQAHMRQMERQREDQEQLQEEIKRLNRQL 1637
>gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens]
Length = 3899
Score = 30.0 bits (66), Expect = 4.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 146 KTYKEKEDFRDLIRQGILKNENGAPEDEENFEEAIKNVNTAL 187
+ Y+E + +L+RQ ++ ED+E +E IK +N L
Sbjct: 1596 RQYQEHQQATELLRQAHMRQMERQREDQEQLQEEIKRLNRQL 1637
>gi|38373673 synaptonemal complex protein 2 [Homo sapiens]
Length = 1530
Score = 30.0 bits (66), Expect = 4.4
Identities = 21/99 (21%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 129 IAKYLAQWYSETNGRIP-KTYKEKEDFRDLIRQGILKNENGAPEDEENFEEAIKNVNTAL 187
I K + + E R+P K K K++++DL + + +EN +N+++ +
Sbjct: 999 ITKKMDKTIPEGRIRLPRKATKTKKNYKDLSNSESECEQEFSHSFKENIPVKEENIHSRM 1058
Query: 188 NTTQIPSSIEDIFNDDRCINITKQTPSFWILARALKEFV 226
T ++P + +F C K+ W + LK+ +
Sbjct: 1059 KTVKLPKKQQKVF----CAETEKELSKQWKNSSLLKDAI 1093
>gi|44890065 hypothetical protein LOC6936 [Homo sapiens]
Length = 781
Score = 29.3 bits (64), Expect = 7.5
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 36 VVVATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDL 94
++ T +P T + LW+ PL +T L+ + R+I++EH E+ + +DL
Sbjct: 553 IINKTIIPRLTDF--VEFLWD---PLSTSQTTSLITHCRVILEEHSTCENEVSKSRQDL 606
>gi|8923009 non-SMC element 4 homolog A [Homo sapiens]
Length = 385
Score = 29.3 bits (64), Expect = 7.5
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 256 VYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRVVRCRSLAEEYGL 315
++ E ++ A + H L +G EK +L S+F + +L G+
Sbjct: 120 LFNEVSRAREAVLDAHFLVLASDLG------IEKAKQLRSDLSSFDMLRYVETLLTHMGV 173
Query: 316 DTINKDEIISSMDNPDNEIVLY 337
+ + +E+I D+PD E ++Y
Sbjct: 174 NPLEAEELIRDEDSPDFEFIVY 195
>gi|239757293 PREDICTED: hypothetical protein XP_002345244 [Homo
sapiens]
Length = 85
Score = 28.9 bits (63), Expect = 9.9
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 261 AKKDAAAVGNHVAKLLQSIGQA 282
A++DAAAVG H+A +Q + QA
Sbjct: 58 AEEDAAAVGGHIAGFVQEVRQA 79
>gi|239751798 PREDICTED: hypothetical protein XP_002347989 [Homo
sapiens]
Length = 85
Score = 28.9 bits (63), Expect = 9.9
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 261 AKKDAAAVGNHVAKLLQSIGQA 282
A++DAAAVG H+A +Q + QA
Sbjct: 58 AEEDAAAVGGHIAGFVQEVRQA 79
>gi|239746289 PREDICTED: hypothetical protein XP_002343688 [Homo
sapiens]
Length = 85
Score = 28.9 bits (63), Expect = 9.9
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 261 AKKDAAAVGNHVAKLLQSIGQA 282
A++DAAAVG H+A +Q + QA
Sbjct: 58 AEEDAAAVGGHIAGFVQEVRQA 79
>gi|62526045 zinc finger protein 638 [Homo sapiens]
Length = 1978
Score = 28.9 bits (63), Expect = 9.9
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 150 EKEDFRDLIRQGILKNENGAPEDEENFEEAIKNVNTALNTTQIPSSIEDIFNDDRCIN 207
E+ED + Q ++ + E+E N EE +KN N+ +++++ + D CI+
Sbjct: 1606 EEEDAAAHLAQALVTVDEVIDEEELNMEEMVKNSNSLF-------TLDELIDQDDCIS 1656
>gi|21626468 zinc finger protein 638 [Homo sapiens]
Length = 1978
Score = 28.9 bits (63), Expect = 9.9
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 150 EKEDFRDLIRQGILKNENGAPEDEENFEEAIKNVNTALNTTQIPSSIEDIFNDDRCIN 207
E+ED + Q ++ + E+E N EE +KN N+ +++++ + D CI+
Sbjct: 1606 EEEDAAAHLAQALVTVDEVIDEEELNMEEMVKNSNSLF-------TLDELIDQDDCIS 1656
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,691,579
Number of Sequences: 37866
Number of extensions: 749844
Number of successful extensions: 1584
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1559
Number of HSP's gapped (non-prelim): 31
length of query: 445
length of database: 18,247,518
effective HSP length: 105
effective length of query: 340
effective length of database: 14,271,588
effective search space: 4852339920
effective search space used: 4852339920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.