Guide to the Human Genome
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Name: LOC100289577 Sequence: fasta or formatted (85aa) NCBI GI: 239746289
Description:

PREDICTED: hypothetical protein XP_002343688

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.1         12           3
 C cysteine            1.2          1           1
 D aspartate           3.5          3           1
 E glutamate          11.8         10           2
 F phenylalanine       1.2          1           1
 G glycine            15.3         13           2
 H histidine           2.4          2           1
 I isoleucine          3.5          3           1
 K lysine              1.2          1           1
 L leucine             8.2          7           1
 M methionine          1.2          1           1
 N asparagine          1.2          1           1
 P proline             4.7          4           1
 Q glutamine          10.6          9           2
 R arginine            3.5          3           1
 S serine              2.4          2           1
 T threonine           0.0          0           0
 V valine             12.9         11           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.2          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343688 
LOC100292106          1.000   PREDICTED: hypothetical protein XP_002345244 
LOC100291225          1.000   PREDICTED: hypothetical protein XP_002347989 
NAE1                  0.028   NEDD8 activating enzyme E1 subunit 1 isoform c [Homo...
NAE1                  0.028   NEDD8 activating enzyme E1 subunit 1 isoform b [Homo...
NAE1                  0.028   NEDD8 activating enzyme E1 subunit 1 isoform a 
GOLM1                 0.014   golgi membrane protein 1 
GOLM1                 0.014   golgi membrane protein 1 
GPATCH1               0.014   G patch domain containing 1 
SPTBN2                0.014   spectrin, beta, non-erythrocytic 2 
BCORL1                0.007   BCL6 co-repressor-like 1 
NES                   0.007   nestin 
SRF                   0.007   serum response factor (c-fos serum response element-b...
PTPRN                 0.007   protein tyrosine phosphatase, receptor type, N precur...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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