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Search of human proteins with 63148618
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|63148618 seven in absentia homolog 1 isoform a [Homo
sapiens]
(282 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|55749557 seven in absentia homolog 1 isoform b [Homo sapiens] 594 e-170
gi|63148618 seven in absentia homolog 1 isoform a [Homo sapiens] 594 e-170
gi|31982899 seven in absentia homolog 2 [Homo sapiens] 463 e-131
gi|110578665 seven in absentia homolog 3 [Homo sapiens] 186 2e-47
gi|87241872 ring finger protein 151 [Homo sapiens] 49 5e-06
gi|45594312 TNF receptor-associated factor 7 [Homo sapiens] 43 3e-04
gi|193788634 cysteine/histidine-rich 1 isoform 1 [Homo sapiens] 43 3e-04
gi|11545910 livin inhibitor of apoptosis isoform beta [Homo sapi... 42 5e-04
gi|21536421 livin inhibitor of apoptosis isoform alpha [Homo sap... 42 5e-04
gi|21264330 mindbomb homolog 2 [Homo sapiens] 42 6e-04
gi|30023818 tripartite motif protein 50A [Homo sapiens] 42 8e-04
gi|8923898 zinc finger protein 313 [Homo sapiens] 40 0.002
gi|57529737 PDZ domain containing ring finger 3 [Homo sapiens] 40 0.003
gi|4507961 zinc finger protein 36, C3H type, homolog [Homo sapiens] 37 0.015
gi|239755644 PREDICTED: tripartite motif-containing 77 [Homo sap... 37 0.015
gi|239750143 PREDICTED: tripartite motif-containing 77 [Homo sap... 37 0.015
gi|239744448 PREDICTED: hypothetical protein XP_002343148 [Homo ... 37 0.015
gi|225903455 tripartite motif-containing 77 [Homo sapiens] 37 0.015
gi|30520320 ring finger protein 166 [Homo sapiens] 37 0.019
gi|21359963 ring finger and WD repeat domain 2 isoform a [Homo s... 36 0.033
gi|50233824 ring finger and WD repeat domain 2 isoform d24 [Homo... 36 0.033
gi|4502141 baculoviral IAP repeat-containing protein 2 [Homo sap... 35 0.057
gi|51479192 ring finger protein 1 [Homo sapiens] 35 0.057
gi|22027630 TNF receptor-associated factor 6 [Homo sapiens] 35 0.074
gi|4759254 TNF receptor-associated factor 6 [Homo sapiens] 35 0.074
gi|30348954 mindbomb homolog 1 [Homo sapiens] 35 0.074
gi|222446607 SH3 domain containing ring finger 2 [Homo sapiens] 35 0.074
gi|22027622 TNF receptor-associated factor 4 [Homo sapiens] 35 0.074
gi|33946285 baculoviral IAP repeat-containing protein 3 [Homo sa... 35 0.097
gi|4502139 baculoviral IAP repeat-containing protein 3 [Homo sap... 35 0.097
>gi|55749557 seven in absentia homolog 1 isoform b [Homo sapiens]
Length = 313
Score = 594 bits (1532), Expect = e-170
Identities = 282/282 (100%), Positives = 282/282 (100%)
Query: 1 MSRQTATALPTGTSKCPPSQRVPALTGTTASNNDLASLFECPVCFDYVLPPILQCQSGHL 60
MSRQTATALPTGTSKCPPSQRVPALTGTTASNNDLASLFECPVCFDYVLPPILQCQSGHL
Sbjct: 32 MSRQTATALPTGTSKCPPSQRVPALTGTTASNNDLASLFECPVCFDYVLPPILQCQSGHL 91
Query: 61 VCSNCRPKLTCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEKADHEEL 120
VCSNCRPKLTCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEKADHEEL
Sbjct: 92 VCSNCRPKLTCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEKADHEEL 151
Query: 121 CEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPGAVDWVM 180
CEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPGAVDWVM
Sbjct: 152 CEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPGAVDWVM 211
Query: 181 MQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATP 240
MQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATP
Sbjct: 212 MQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATP 271
Query: 241 RSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTISMC 282
RSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTISMC
Sbjct: 272 RSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTISMC 313
>gi|63148618 seven in absentia homolog 1 isoform a [Homo sapiens]
Length = 282
Score = 594 bits (1532), Expect = e-170
Identities = 282/282 (100%), Positives = 282/282 (100%)
Query: 1 MSRQTATALPTGTSKCPPSQRVPALTGTTASNNDLASLFECPVCFDYVLPPILQCQSGHL 60
MSRQTATALPTGTSKCPPSQRVPALTGTTASNNDLASLFECPVCFDYVLPPILQCQSGHL
Sbjct: 1 MSRQTATALPTGTSKCPPSQRVPALTGTTASNNDLASLFECPVCFDYVLPPILQCQSGHL 60
Query: 61 VCSNCRPKLTCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEKADHEEL 120
VCSNCRPKLTCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEKADHEEL
Sbjct: 61 VCSNCRPKLTCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEKADHEEL 120
Query: 121 CEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPGAVDWVM 180
CEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPGAVDWVM
Sbjct: 121 CEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPGAVDWVM 180
Query: 181 MQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATP 240
MQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATP
Sbjct: 181 MQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATP 240
Query: 241 RSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTISMC 282
RSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTISMC
Sbjct: 241 RSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTISMC 282
>gi|31982899 seven in absentia homolog 2 [Homo sapiens]
Length = 324
Score = 463 bits (1192), Expect = e-131
Identities = 221/286 (77%), Positives = 248/286 (86%), Gaps = 8/286 (2%)
Query: 5 TATALPTGTSKCPPSQRVPALTG-------TTASNNDLASLFECPVCFDYVLPPILQCQS 57
T +A G+S P + V + G + +++L SLFECPVCFDYVLPPILQCQ+
Sbjct: 37 TISAAGPGSSAVPAAAAVISGPGGGGGAGPVSPQHHELTSLFECPVCFDYVLPPILQCQA 96
Query: 58 GHLVCSNCRPKLTCCPTCRGPLG-SIRNLAMEKVANSVLFPCKYASSGCEITLPHTEKAD 116
GHLVC+ CR KL+CCPTCRG L SIRNLAMEKVA++VLFPCKYA++GC +TL HTEK +
Sbjct: 97 GHLVCNQCRQKLSCCPTCRGALTPSIRNLAMEKVASAVLFPCKYATTGCSLTLHHTEKPE 156
Query: 117 HEELCEFRPYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPGAV 176
HE++CE+RPYSCPCPGASCKWQGSL+AVM HLMH HKSITTLQGEDIVFLATDINLPGAV
Sbjct: 157 HEDICEYRPYSCPCPGASCKWQGSLEAVMSHLMHAHKSITTLQGEDIVFLATDINLPGAV 216
Query: 177 DWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTW 236
DWVMMQSCFG HFMLVLEKQEKY+GHQQFFAIV LIGTRKQAENFAYRLELNG+RRRLTW
Sbjct: 217 DWVMMQSCFGHHFMLVLEKQEKYEGHQQFFAIVLLIGTRKQAENFAYRLELNGNRRRLTW 276
Query: 237 EATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTISMC 282
EATPRSIH+G+A AIMNSDCLVFDT+IA LFA+NGNLGINVTIS C
Sbjct: 277 EATPRSIHDGVAAAIMNSDCLVFDTAIAHLFADNGNLGINVTISTC 322
>gi|110578665 seven in absentia homolog 3 [Homo sapiens]
Length = 269
Score = 186 bits (473), Expect = 2e-47
Identities = 86/156 (55%), Positives = 115/156 (73%), Gaps = 1/156 (0%)
Query: 125 PYSCPCPGASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPGAVDWVMMQSC 184
P C CP SC+W+G L+ V+PHL H+ + LQG +IVFLATD++LP DW++M SC
Sbjct: 104 PCLCMCPLFSCQWEGRLEVVVPHLRQIHR-VDILQGAEIVFLATDMHLPAPADWIIMHSC 162
Query: 185 FGFHFMLVLEKQEKYDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIH 244
G HF+LVL KQE+++GH QFFA + LIGT QA+ F YRLELN + RRL WEATPRS+
Sbjct: 163 LGHHFLLVLRKQERHEGHPQFFATMMLIGTPTQADCFTYRLELNRNHRRLKWEATPRSVL 222
Query: 245 EGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTIS 280
E + + I + DCLV +TS+AQLF++NG+L I + I+
Sbjct: 223 ECVDSVITDGDCLVLNTSLAQLFSDNGSLAIGIAIT 258
>gi|87241872 ring finger protein 151 [Homo sapiens]
Length = 245
Score = 48.9 bits (115), Expect = 5e-06
Identities = 34/122 (27%), Positives = 50/122 (40%), Gaps = 12/122 (9%)
Query: 37 SLFECPVCFDYVLPPI-LQCQSGHLVCSNC----RPKLTCCPTCRGPLGSIRNLAMEKVA 91
S F C VC + P L C H+ C C + CP CR + + + M K+
Sbjct: 16 SNFVCSVCHGVLKRPARLPCS--HIFCKKCILRWLARQKTCPCCRKEVKRKKVVHMNKLR 73
Query: 92 NSV---LFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQGSLDAVMPHL 148
++ CK A +GC +T P + H++ C F +CP G C Q + H
Sbjct: 74 KTIGRLEVKCKNADAGCIVTCPLAHRKGHQDSCPFELTACPNEG--CTSQVPRGTLAEHR 131
Query: 149 MH 150
H
Sbjct: 132 QH 133
>gi|45594312 TNF receptor-associated factor 7 [Homo sapiens]
Length = 670
Score = 43.1 bits (100), Expect = 3e-04
Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 21/111 (18%)
Query: 41 CPVCFDYVLPPILQCQSGHLVCSNCRPKLTCCPTCRGPLGSI-RNLAMEKVANSVLFPCK 99
C +C P++ GH C C K CP L + N+A+ + + C+
Sbjct: 131 CQLCCSVFKDPVITT-CGHTFCRRCALKSEKCPVDNVKLTVVVNNIAVAEQIGELFIHCR 189
Query: 100 YASS---------------GCEITLPHTEKADHEELCEFRPYSCP----CP 131
+ GC T+ + + DHE C++RP CP CP
Sbjct: 190 HGCRVAGSGKPPIFEVDPRGCPFTIKLSARKDHEGSCDYRPVRCPNNPSCP 240
>gi|193788634 cysteine/histidine-rich 1 isoform 1 [Homo sapiens]
Length = 362
Score = 43.1 bits (100), Expect = 3e-04
Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 18/107 (16%)
Query: 55 CQSGHLVCSNC----------RPKLTCCPTCRGPLGS---IRNLAMEKVANSVLFPCKYA 101
C +GHL+C+ C + + CP CR + RNLA+EK + + C +
Sbjct: 83 CTNGHLMCAGCFIHLLADARLKEEQATCPNCRCEISKSLCCRNLAVEKAVSELPSECGF- 141
Query: 102 SSGCEITLPHTEKADHE-ELCEFRPYSCPCPGASCKWQGSLDAVMPH 147
C P + H+ E C+ R C C W G + H
Sbjct: 142 ---CLRQFPRSLLERHQKEECQDRVTQCKYKRIGCPWHGPFHELTVH 185
>gi|11545910 livin inhibitor of apoptosis isoform beta [Homo
sapiens]
Length = 280
Score = 42.4 bits (98), Expect = 5e-04
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 41 CPVCFDYVLPPILQCQSGHLVCSNCRPKLTCCPTCRGPLGS 81
C VC D + I+ GHLVC+ C P L CP CR P+ S
Sbjct: 234 CKVCLDRAVS-IVFVPCGHLVCAECAPGLQLCPICRAPVRS 273
>gi|21536421 livin inhibitor of apoptosis isoform alpha [Homo
sapiens]
Length = 298
Score = 42.4 bits (98), Expect = 5e-04
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 41 CPVCFDYVLPPILQCQSGHLVCSNCRPKLTCCPTCRGPLGS 81
C VC D + I+ GHLVC+ C P L CP CR P+ S
Sbjct: 252 CKVCLDRAVS-IVFVPCGHLVCAECAPGLQLCPICRAPVRS 291
>gi|21264330 mindbomb homolog 2 [Homo sapiens]
Length = 1013
Score = 42.0 bits (97), Expect = 6e-04
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 17 PPSQRVPALTGTTASNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKLTCCPTCR 76
PP Q V L + + CP+C D + + QC GH C+ C L+ CP CR
Sbjct: 948 PPRQLVEELQ---SRYRQMEERITCPICIDSHIRLVFQC--GHGACAPCGSALSACPICR 1002
Query: 77 GPL 79
P+
Sbjct: 1003 QPI 1005
>gi|30023818 tripartite motif protein 50A [Homo sapiens]
Length = 487
Score = 41.6 bits (96), Expect = 8e-04
Identities = 39/190 (20%), Positives = 72/190 (37%), Gaps = 24/190 (12%)
Query: 34 DLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKLTC-------CPTCRGPL---GSIR 83
+L +CP+C + P++ Q GH C C L+C CP CR + S+
Sbjct: 9 ELEDWLQCPICLEVFKEPLM-LQCGHSYCKGCLVSLSCHLDAELRCPVCRQAVDGSSSLP 67
Query: 84 NLAMEKVANSVLFPCKYASSGC---EITLPHTEKADHEELC---------EFRPYSCPCP 131
N+++ +V ++ P C L + D E +C + P + P
Sbjct: 68 NVSLARVIEALRLPGDPEPKVCVHHRNPLSLFCEKDQELICGLCGLLGSHQHHPVT-PVS 126
Query: 132 GASCKWQGSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFML 191
+ + L A++ L + K + L + + +N WV+ + H ++
Sbjct: 127 TVYSRMKEELAALISELKQEQKKVDELIAKLVNNRTRIVNESDVFSWVIRREFQELHHLV 186
Query: 192 VLEKQEKYDG 201
EK +G
Sbjct: 187 DEEKARCLEG 196
>gi|8923898 zinc finger protein 313 [Homo sapiens]
Length = 228
Score = 40.0 bits (92), Expect = 0.002
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 30 ASNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNC-----RPKLTCCPTCRGPLG-SIR 83
A+ D F CPVC + P+ Q GH+ CS C +PK C CR L +R
Sbjct: 18 AAEADPLGRFTCPVCLEVYEKPV-QVPCGHVFCSACLQECLKPKKPVCGVCRSALAPGVR 76
Query: 84 NLAMEKVANSVLFPC 98
+ +E+ S C
Sbjct: 77 AVELERQIESTETSC 91
>gi|57529737 PDZ domain containing ring finger 3 [Homo sapiens]
Length = 1066
Score = 39.7 bits (91), Expect = 0.003
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 9/105 (8%)
Query: 32 NNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCR-----PKLTCCPTCRGPLGSIRN-- 84
+ D+ +C +C + P L GH+ C+ C + +C CRG L +
Sbjct: 9 DGDVDPDLKCALCHKVLEDP-LTTPCGHVFCAGCVLPWVVQEGSCPARCRGRLSAKELNH 67
Query: 85 -LAMEKVANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSC 128
L ++++ + C YA+ GC + + +H E C+F P C
Sbjct: 68 VLPLKRLILKLDIKCAYATRGCGRVVKLQQLPEHLERCDFAPARC 112
>gi|4507961 zinc finger protein 36, C3H type, homolog [Homo sapiens]
Length = 326
Score = 37.4 bits (85), Expect = 0.015
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 15/110 (13%)
Query: 7 TALPTGTSKCPPSQRVPALTGTTASNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCR 66
+ LP+G PP P L G + S++ + P D L P + +
Sbjct: 188 SGLPSGRRTSPPP---PGLAGPSLSSSSFSPSSSPPPPGDLPLSPSAFSAAPGTPLARRD 244
Query: 67 PKLTCCPTCR--------GPLGS-IRNLAMEKVANSVLFPCKYASSGCEI 107
P CCP+CR GPLG +R +++ + + P +YASSG +
Sbjct: 245 PTPVCCPSCRRATPISVWGPLGGLVRTPSVQSLGSD---PDEYASSGSSL 291
>gi|239755644 PREDICTED: tripartite motif-containing 77 [Homo
sapiens]
Length = 455
Score = 37.4 bits (85), Expect = 0.015
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 13/85 (15%)
Query: 41 CPVCFDYVLPPILQCQSGHLVCSNCRPKL-------TCCPTCRGPLGSI---RNLAMEK- 89
C +C DY+ P+ C GH CS C L CCP CR + R + EK
Sbjct: 15 CSICTDYLTDPVTIC-CGHRFCSPCLCLLWEDTLTPNCCPVCREISQQMYFKRIIFAEKQ 73
Query: 90 -VANSVLFPCKYASSGCEITLPHTE 113
+ PC+ +SS I H E
Sbjct: 74 VIPTRESVPCQLSSSAMLICRRHQE 98
>gi|239750143 PREDICTED: tripartite motif-containing 77 [Homo
sapiens]
Length = 455
Score = 37.4 bits (85), Expect = 0.015
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 13/85 (15%)
Query: 41 CPVCFDYVLPPILQCQSGHLVCSNCRPKL-------TCCPTCRGPLGSI---RNLAMEK- 89
C +C DY+ P+ C GH CS C L CCP CR + R + EK
Sbjct: 15 CSICTDYLTDPVTIC-CGHRFCSPCLCLLWEDTLTPNCCPVCREISQQMYFKRIIFAEKQ 73
Query: 90 -VANSVLFPCKYASSGCEITLPHTE 113
+ PC+ +SS I H E
Sbjct: 74 VIPTRESVPCQLSSSAMLICRRHQE 98
>gi|239744448 PREDICTED: hypothetical protein XP_002343148 [Homo
sapiens]
Length = 450
Score = 37.4 bits (85), Expect = 0.015
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 13/85 (15%)
Query: 41 CPVCFDYVLPPILQCQSGHLVCSNCRPKL-------TCCPTCRGPLGSI---RNLAMEK- 89
C +C DY+ P+ C GH CS C L CCP CR + R + EK
Sbjct: 15 CSICTDYLTDPVTIC-CGHRFCSPCLCLLWEDTLTPNCCPVCREISQQMYFKRIIFAEKQ 73
Query: 90 -VANSVLFPCKYASSGCEITLPHTE 113
+ PC+ +SS I H E
Sbjct: 74 VIPTRESVPCQLSSSAMLICRRHQE 98
>gi|225903455 tripartite motif-containing 77 [Homo sapiens]
Length = 450
Score = 37.4 bits (85), Expect = 0.015
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 13/85 (15%)
Query: 41 CPVCFDYVLPPILQCQSGHLVCSNCRPKL-------TCCPTCRGPLGSI---RNLAMEK- 89
C +C DY+ P+ C GH CS C L CCP CR + R + EK
Sbjct: 15 CSICTDYLTDPVTIC-CGHRFCSPCLCLLWEDTLTPNCCPVCREISQQMYFKRIIFAEKQ 73
Query: 90 -VANSVLFPCKYASSGCEITLPHTE 113
+ PC+ +SS I H E
Sbjct: 74 VIPTRESVPCQLSSSAMLICRRHQE 98
>gi|30520320 ring finger protein 166 [Homo sapiens]
Length = 237
Score = 37.0 bits (84), Expect = 0.019
Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 13/110 (11%)
Query: 20 QRVPALTGTTASNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNC-RPKL----TCCPT 74
QR P G ++ L + + CP+C + P+ GH C C +P L CP
Sbjct: 13 QRQPP-AGPAGGDSGLEAQYTCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPSPLCPL 71
Query: 75 CRGPLGS---IRNLAMEKVANSVLFPCKYASSGCEITLPHTEKADHEELC 121
CR P + +EK +S PC+ GC + + H C
Sbjct: 72 CRLPFDPKKVDKATHVEKQLSSYKAPCR----GCNKKVTLAKMRVHISSC 117
>gi|21359963 ring finger and WD repeat domain 2 isoform a [Homo
sapiens]
Length = 731
Score = 36.2 bits (82), Expect = 0.033
Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 7/112 (6%)
Query: 5 TATALPTGTSKCPPSQRVPALTGTTASNNDLASLFECPVCFDYVLPPILQCQSGHLVCSN 64
++++L +G+ K P P G S D ++ F CP+CFD ++ + GH C
Sbjct: 102 SSSSLGSGSRKRP--LLAPLCNGLINSYEDKSNDFVCPICFD-MIEEAYMTKCGHSFCYK 158
Query: 65 CRPKL----TCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHT 112
C + CP C + +I +L + N ++ K L H+
Sbjct: 159 CIHQSLEDNNRCPKCNYVVDNIDHLYPNFLVNELILKQKQRFEEKRFKLDHS 210
>gi|50233824 ring finger and WD repeat domain 2 isoform d24 [Homo
sapiens]
Length = 707
Score = 36.2 bits (82), Expect = 0.033
Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 7/112 (6%)
Query: 5 TATALPTGTSKCPPSQRVPALTGTTASNNDLASLFECPVCFDYVLPPILQCQSGHLVCSN 64
++++L +G+ K P P G S D ++ F CP+CFD ++ + GH C
Sbjct: 102 SSSSLGSGSRKRP--LLAPLCNGLINSYEDKSNDFVCPICFD-MIEEAYMTKCGHSFCYK 158
Query: 65 CRPKL----TCCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHT 112
C + CP C + +I +L + N ++ K L H+
Sbjct: 159 CIHQSLEDNNRCPKCNYVVDNIDHLYPNFLVNELILKQKQRFEEKRFKLDHS 210
>gi|4502141 baculoviral IAP repeat-containing protein 2 [Homo
sapiens]
Length = 618
Score = 35.4 bits (80), Expect = 0.057
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 41 CPVCFDYVLPPILQCQSGHLV-CSNCRPKLTCCPTCRGPL-GSIR 83
C VC D + + GHLV C C P L CP CRG + G++R
Sbjct: 571 CKVCMDKEVSVVF-IPCGHLVVCQECAPSLRKCPICRGIIKGTVR 614
>gi|51479192 ring finger protein 1 [Homo sapiens]
Length = 406
Score = 35.4 bits (80), Expect = 0.057
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 18 PSQRVPALTGTTASNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNC-----RPKLTCC 72
P + + T S L S CP+C D + + + H CS+C R C
Sbjct: 25 PQEAIMDGTEIAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKEC 84
Query: 73 PTCRGPLGSIRNL 85
PTCR L S R+L
Sbjct: 85 PTCRKKLVSKRSL 97
>gi|22027630 TNF receptor-associated factor 6 [Homo sapiens]
Length = 522
Score = 35.0 bits (79), Expect = 0.074
Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 23/109 (21%)
Query: 35 LASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKLTCCPTCRGPLGSIRNLAMEKVANSV 94
L S +ECP+C L +Q GH C C K + P+ + E + +
Sbjct: 64 LESKYECPICL-MALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDN------EILLENQ 116
Query: 95 LFPCKYA------------SSGC--EITLPHTEKADHEELCEFRPYSCP 129
LFP +A + GC ++ L H E DH+ CEF CP
Sbjct: 117 LFPDNFAKREILSLMVKCPNEGCLHKMELRHLE--DHQAHCEFALMDCP 163
>gi|4759254 TNF receptor-associated factor 6 [Homo sapiens]
Length = 522
Score = 35.0 bits (79), Expect = 0.074
Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 23/109 (21%)
Query: 35 LASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKLTCCPTCRGPLGSIRNLAMEKVANSV 94
L S +ECP+C L +Q GH C C K + P+ + E + +
Sbjct: 64 LESKYECPICL-MALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDN------EILLENQ 116
Query: 95 LFPCKYA------------SSGC--EITLPHTEKADHEELCEFRPYSCP 129
LFP +A + GC ++ L H E DH+ CEF CP
Sbjct: 117 LFPDNFAKREILSLMVKCPNEGCLHKMELRHLE--DHQAHCEFALMDCP 163
>gi|30348954 mindbomb homolog 1 [Homo sapiens]
Length = 1006
Score = 35.0 bits (79), Expect = 0.074
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 34 DLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKLTCCPTCR 76
D+ CPVC D + I C GH C C +++ CP CR
Sbjct: 956 DIKEQTMCPVCLDRLKNMIFLC--GHGTCQLCGDRMSECPICR 996
Score = 29.6 bits (65), Expect = 3.1
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 32 NNDLASLFECPVCFDYVLPPILQCQSGHL-VCSNCRPKLTCCPTCRGPLGSIRNL----- 85
+ND +L EC VC D + L GH+ CS C P++ C C+ + S +
Sbjct: 810 SNDSETLEECMVCSD-MKRDTLFGPCGHIATCSLCSPRVKKCLICKEQVQSRTKIEECVV 868
Query: 86 AMEKVANSVLFPCKYASSGCE 106
+K A + PC + + CE
Sbjct: 869 CSDKKAAVLFQPCGHMCA-CE 888
>gi|222446607 SH3 domain containing ring finger 2 [Homo sapiens]
Length = 729
Score = 35.0 bits (79), Expect = 0.074
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 10/55 (18%)
Query: 35 LASLFECPVCFDY--VLPPILQCQSGHLVCSNCRPKL------TCCPTCRGPLGS 81
L L ECPVCF+ V +L CQ H C C ++ CP CR P+ S
Sbjct: 6 LLDLLECPVCFEKLDVTAKVLPCQ--HTFCKPCLQRVFKAHKELRCPECRTPVFS 58
>gi|22027622 TNF receptor-associated factor 4 [Homo sapiens]
Length = 470
Score = 35.0 bits (79), Expect = 0.074
Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 10/101 (9%)
Query: 41 CPVCFDYVLPPILQCQSGHLVCSNCRPKLTC-----CPTCRGPLGSIRNLAMEKVANSVL 95
CP+C + P+ GH C C + CP + PL + ++ VL
Sbjct: 18 CPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPLDYAKIYPDPELEVQVL 77
Query: 96 ---FPCKYASSGCEITLPHTEKADHEELCEFRPYSCP--CP 131
C ++ GC + P H C F CP CP
Sbjct: 78 GLPIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVIPCPNRCP 118
>gi|33946285 baculoviral IAP repeat-containing protein 3 [Homo
sapiens]
Length = 604
Score = 34.7 bits (78), Expect = 0.097
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 41 CPVCFDYVLPPILQCQSGHLV-CSNCRPKLTCCPTCRGPL-GSIR 83
C VC D + I+ GHLV C +C P L CP CR + G++R
Sbjct: 557 CKVCMDKEVS-IVFIPCGHLVVCKDCAPSLRKCPICRSTIKGTVR 600
>gi|4502139 baculoviral IAP repeat-containing protein 3 [Homo
sapiens]
Length = 604
Score = 34.7 bits (78), Expect = 0.097
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 41 CPVCFDYVLPPILQCQSGHLV-CSNCRPKLTCCPTCRGPL-GSIR 83
C VC D + I+ GHLV C +C P L CP CR + G++R
Sbjct: 557 CKVCMDKEVS-IVFIPCGHLVVCKDCAPSLRKCPICRSTIKGTVR 600
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.135 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,731,497
Number of Sequences: 37866
Number of extensions: 526415
Number of successful extensions: 1653
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 1609
Number of HSP's gapped (non-prelim): 138
length of query: 282
length of database: 18,247,518
effective HSP length: 101
effective length of query: 181
effective length of database: 14,423,052
effective search space: 2610572412
effective search space used: 2610572412
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.