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Search of human proteins with 63082033
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|63082033 hypothetical protein LOC51149 isoform 1 [Homo
sapiens]
(343 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|63082033 hypothetical protein LOC51149 isoform 1 [Homo sapiens] 709 0.0
gi|63082035 hypothetical protein LOC51149 isoform 2 [Homo sapiens] 554 e-158
gi|145199237 transcription elongation factor B polypeptide 3 bin... 41 0.001
gi|28557729 hypothetical protein LOC283687 [Homo sapiens] 39 0.005
gi|27262667 colony stimulating factor 1 isoform a precursor [Hom... 38 0.012
gi|27262661 colony stimulating factor 1 isoform a precursor [Hom... 38 0.012
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 37 0.020
gi|4557733 latent transforming growth factor beta binding protei... 37 0.020
gi|187960090 SMG5 homolog nonsense mediated mRNA decay factor [H... 37 0.020
gi|112821681 G protein-regulated inducer of neurite outgrowth 1 ... 37 0.020
gi|148833506 obscurin, cytoskeletal calmodulin and titin-interac... 37 0.034
gi|150170670 piccolo isoform 2 [Homo sapiens] 35 0.075
gi|150378539 piccolo isoform 1 [Homo sapiens] 35 0.075
gi|62243586 ubiquitin-specific protease 21 [Homo sapiens] 35 0.075
gi|74027267 ubiquitin-specific protease 21 [Homo sapiens] 35 0.075
gi|38569493 potassium voltage-gated channel, subfamily H (eag-re... 35 0.075
gi|55750053 atrophin-1 [Homo sapiens] 35 0.098
gi|55750041 atrophin-1 [Homo sapiens] 35 0.098
gi|145580582 uromodulin-like 1 isoform 2 precursor [Homo sapiens] 35 0.098
gi|151301154 mucin 6, gastric [Homo sapiens] 34 0.17
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 34 0.17
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 34 0.17
gi|7706687 Enah/Vasp-like [Homo sapiens] 34 0.17
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 34 0.17
gi|10863903 thyroid hormone receptor interactor 12 [Homo sapiens] 34 0.22
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 34 0.22
gi|45120119 microtubule associated serine/threonine kinase 1 [Ho... 33 0.28
gi|22748699 hypothetical protein LOC121273 [Homo sapiens] 33 0.28
gi|189011568 adenomatous polyposis coli [Homo sapiens] 33 0.48
gi|189011566 adenomatous polyposis coli [Homo sapiens] 33 0.48
>gi|63082033 hypothetical protein LOC51149 isoform 1 [Homo sapiens]
Length = 343
Score = 709 bits (1831), Expect = 0.0
Identities = 343/343 (100%), Positives = 343/343 (100%)
Query: 1 MASLQRSRVLRCCSCRLFQAHQVKKSVKWTCKACGEKQSFLQAYGEGSGADCRRHVQKLN 60
MASLQRSRVLRCCSCRLFQAHQVKKSVKWTCKACGEKQSFLQAYGEGSGADCRRHVQKLN
Sbjct: 1 MASLQRSRVLRCCSCRLFQAHQVKKSVKWTCKACGEKQSFLQAYGEGSGADCRRHVQKLN 60
Query: 61 LLQGQVSELPLRSLEETVSASEEENVGHQQAGNVKQQEKSQPSESRWLKYLEKDSQELEL 120
LLQGQVSELPLRSLEETVSASEEENVGHQQAGNVKQQEKSQPSESRWLKYLEKDSQELEL
Sbjct: 61 LLQGQVSELPLRSLEETVSASEEENVGHQQAGNVKQQEKSQPSESRWLKYLEKDSQELEL 120
Query: 121 EGTGVCFSKQPSSKMEEPGPRFSQDLPRKRKWSRSTVQPPCSRGVQDSGGSEVAWGPQKG 180
EGTGVCFSKQPSSKMEEPGPRFSQDLPRKRKWSRSTVQPPCSRGVQDSGGSEVAWGPQKG
Sbjct: 121 EGTGVCFSKQPSSKMEEPGPRFSQDLPRKRKWSRSTVQPPCSRGVQDSGGSEVAWGPQKG 180
Query: 181 QAGLTWKVKQGSSPCLQENSADCSAGELRGPGKELWSPIQQVTATSSKWAQFVLPPRKSS 240
QAGLTWKVKQGSSPCLQENSADCSAGELRGPGKELWSPIQQVTATSSKWAQFVLPPRKSS
Sbjct: 181 QAGLTWKVKQGSSPCLQENSADCSAGELRGPGKELWSPIQQVTATSSKWAQFVLPPRKSS 240
Query: 241 HVDSEQPRSLQRDPRPAGPAQAKQGTPRAQASREGLSRPTAAVQLPRATHPVTSGSERPC 300
HVDSEQPRSLQRDPRPAGPAQAKQGTPRAQASREGLSRPTAAVQLPRATHPVTSGSERPC
Sbjct: 241 HVDSEQPRSLQRDPRPAGPAQAKQGTPRAQASREGLSRPTAAVQLPRATHPVTSGSERPC 300
Query: 301 GKTSWDARTPWAEGGPLVLEAQNPRPTRLCDLFITGEDFDDDV 343
GKTSWDARTPWAEGGPLVLEAQNPRPTRLCDLFITGEDFDDDV
Sbjct: 301 GKTSWDARTPWAEGGPLVLEAQNPRPTRLCDLFITGEDFDDDV 343
>gi|63082035 hypothetical protein LOC51149 isoform 2 [Homo sapiens]
Length = 288
Score = 554 bits (1427), Expect = e-158
Identities = 280/343 (81%), Positives = 283/343 (82%), Gaps = 55/343 (16%)
Query: 1 MASLQRSRVLRCCSCRLFQAHQVKKSVKWTCKACGEKQSFLQAYGEGSGADCRRHVQKLN 60
MASLQRSRVLRCCSCRLFQAHQVKKSVKWT C+ +K +
Sbjct: 1 MASLQRSRVLRCCSCRLFQAHQVKKSVKWT---------------------CKACGEKQS 39
Query: 61 LLQGQVSELPLRSLEETVSASEEENVGHQQAGNVKQQEKSQPSESRWLKYLEKDSQELEL 120
LQ EKSQPSESRWLKYLEKDSQELEL
Sbjct: 40 FLQ----------------------------------EKSQPSESRWLKYLEKDSQELEL 65
Query: 121 EGTGVCFSKQPSSKMEEPGPRFSQDLPRKRKWSRSTVQPPCSRGVQDSGGSEVAWGPQKG 180
EGTGVCFSKQPSSKMEEPGPRFSQDLPRKRKWSRSTVQPPCSRGVQDSGGSEVAWGPQKG
Sbjct: 66 EGTGVCFSKQPSSKMEEPGPRFSQDLPRKRKWSRSTVQPPCSRGVQDSGGSEVAWGPQKG 125
Query: 181 QAGLTWKVKQGSSPCLQENSADCSAGELRGPGKELWSPIQQVTATSSKWAQFVLPPRKSS 240
QAGLTWKVKQGSSPCLQENSADCSAGELRGPGKELWSPIQQVTATSSKWAQFVLPPRKSS
Sbjct: 126 QAGLTWKVKQGSSPCLQENSADCSAGELRGPGKELWSPIQQVTATSSKWAQFVLPPRKSS 185
Query: 241 HVDSEQPRSLQRDPRPAGPAQAKQGTPRAQASREGLSRPTAAVQLPRATHPVTSGSERPC 300
HVDSEQPRSLQRDPRPAGPAQAKQGTPRAQASREGLSRPTAAVQLPRATHPVTSGSERPC
Sbjct: 186 HVDSEQPRSLQRDPRPAGPAQAKQGTPRAQASREGLSRPTAAVQLPRATHPVTSGSERPC 245
Query: 301 GKTSWDARTPWAEGGPLVLEAQNPRPTRLCDLFITGEDFDDDV 343
GKTSWDARTPWAEGGPLVLEAQNPRPTRLCDLFITGEDFDDDV
Sbjct: 246 GKTSWDARTPWAEGGPLVLEAQNPRPTRLCDLFITGEDFDDDV 288
>gi|145199237 transcription elongation factor B polypeptide 3
binding protein 1 [Homo sapiens]
Length = 1221
Score = 41.2 bits (95), Expect = 0.001
Identities = 46/192 (23%), Positives = 73/192 (38%), Gaps = 38/192 (19%)
Query: 154 RSTVQPPCSRGVQDSGGSEVAWGPQKGQAGLTWKVKQGSSPCLQENSADCSAGELRGPGK 213
++T QPP G++ GG GL +E + C G+L+ P
Sbjct: 316 KATGQPPSKEGLEAEGG------------GLRET---------KETAVQCDVGDLQPPPA 354
Query: 214 ELWSPIQQVTATSSKWAQFVLPPRKSSHV-------DSEQPRSLQRDP---RPAGPAQAK 263
+ SP Q ++ + P +K + D Q + +D RP +A
Sbjct: 355 KPASPAQVQSSQDGGCPKEGKPKKKKTGAPPAPSCKDGAQGKDKTKDKGRGRPVEKPRAD 414
Query: 264 QGTPRAQASREGLSRPTAAVQLPRATHPV-TSGSERP------CGKTSWDARTPWAEGGP 316
+ P+A + R RP + P + PV TSG RP TS D+R G P
Sbjct: 415 KKGPQASSPRRKAERPEGTKKKPSSATPVATSGKGRPDRPARRPSPTSGDSRPAAGRGPP 474
Query: 317 LVLEAQNPRPTR 328
L+ + + T+
Sbjct: 475 RPLQLPDRKSTK 486
>gi|28557729 hypothetical protein LOC283687 [Homo sapiens]
Length = 130
Score = 39.3 bits (90), Expect = 0.005
Identities = 38/118 (32%), Positives = 43/118 (36%), Gaps = 21/118 (17%)
Query: 211 PGKELWSPIQQVTATSSKWAQFVLPPRKSSHVDSEQPRSLQRDPRPAGPAQAKQGTPRAQ 270
P E WSPIQ + L P +S S QP + R P GP
Sbjct: 4 PASESWSPIQSRIPAYKAVSHLRLLPTANSPSGSNQPTNPNRAQHPEGP----------- 52
Query: 271 ASREGLSRPTAAVQLPRATHPVTSGSERPCGKTSWDARTPWAEGGPLVLEAQNPRPTR 328
SREG + P A P + S RP R P AE GP L RPTR
Sbjct: 53 QSREGATSPVLASLEPPTPTDLPSARARP--------RVP-AESGPGWLHKAR-RPTR 100
>gi|27262667 colony stimulating factor 1 isoform a precursor [Homo
sapiens]
Length = 554
Score = 38.1 bits (87), Expect = 0.012
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 19/98 (19%)
Query: 236 PRKSSHVDSEQPRSLQRDPRPAGPAQAKQGTPRAQASR-EGLSRPTAAVQLPRATHPVTS 294
P+K+ H P +L RDP + G+PR + R +GLS P+ P+ + +S
Sbjct: 384 PQKTDH-----PSALLRDP-------PEPGSPRISSLRPQGLSNPSTLSAQPQLSRSHSS 431
Query: 295 GSERPCG-----KTSWDARTP-WAEGGPLVLEAQNPRP 326
GS P G +++ D R+P EGGP A P P
Sbjct: 432 GSVLPLGELEGRRSTRDRRSPAEPEGGPASEGAARPLP 469
>gi|27262661 colony stimulating factor 1 isoform a precursor [Homo
sapiens]
Length = 554
Score = 38.1 bits (87), Expect = 0.012
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 19/98 (19%)
Query: 236 PRKSSHVDSEQPRSLQRDPRPAGPAQAKQGTPRAQASR-EGLSRPTAAVQLPRATHPVTS 294
P+K+ H P +L RDP + G+PR + R +GLS P+ P+ + +S
Sbjct: 384 PQKTDH-----PSALLRDP-------PEPGSPRISSLRPQGLSNPSTLSAQPQLSRSHSS 431
Query: 295 GSERPCG-----KTSWDARTP-WAEGGPLVLEAQNPRP 326
GS P G +++ D R+P EGGP A P P
Sbjct: 432 GSVLPLGELEGRRSTRDRRSPAEPEGGPASEGAARPLP 469
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [Homo
sapiens]
Length = 3969
Score = 37.4 bits (85), Expect = 0.020
Identities = 46/180 (25%), Positives = 75/180 (41%), Gaps = 47/180 (26%)
Query: 89 QQAGNVKQQEKSQPSESRWLKYLEKDSQELELEGTGVCFSKQPS-SKMEEPGPRFSQDLP 147
+QA VK++EK + + KDS+E + V S++P+ S E+P P+
Sbjct: 1208 KQAKAVKKKEKKSKTSEK------KDSKESSVVKNVVDSSQKPTPSAREDPAPK------ 1255
Query: 148 RKRKWSRSTVQPPCSRGVQDSG--GSEVAWGPQKGQAGLTWKVKQGSSPCLQENSADCSA 205
+S+ +PP + V++ G+ A GP+ KQ ++P +++S S
Sbjct: 1256 ------KSSSEPPPRKPVEEKSEEGNVSAPGPES---------KQATTPASRKSSKQVSQ 1300
Query: 206 GELRGPGKELWSPIQQVTATSSKWAQFVLPPRKS-SHVDSEQPRSLQRDPRPAGPAQAKQ 264
L P P T PPRK +P+ Q P +GP Q+KQ
Sbjct: 1301 PALVIP------PQPPTTG----------PPRKEVPKTTPSEPKKKQPPPPESGPEQSKQ 1344
Score = 30.4 bits (67), Expect = 2.4
Identities = 33/140 (23%), Positives = 51/140 (36%), Gaps = 15/140 (10%)
Query: 216 WSPIQQVTATSSKWAQFVLPP----------RKSSHVDSEQPRSLQR---DPRPAGPAQA 262
W P +V++ S VLPP + + +EQP +++ P+P GP +
Sbjct: 1777 WEP-NKVSSNSGMLPNAVLPPSLDHNYAQWQEREENSHTEQPPLMKKIIPAPKPKGPGEP 1835
Query: 263 KQGTPRAQASREGLSRPTAAVQLPRATHPVTSGSERPCGKTSWDARTPWAEGGPLVLEAQ 322
TP + LS + P P R C + G L+ Q
Sbjct: 1836 DSPTPLHPPTPPILSTDRSREDSPELNPPPGIEDNRQCALCLTYGDDSANDAGRLLYIGQ 1895
Query: 323 NPRPTRLCDLFITGEDFDDD 342
N C L+ + E F+DD
Sbjct: 1896 NEWTHVNCALW-SAEVFEDD 1914
>gi|4557733 latent transforming growth factor beta binding protein 2
[Homo sapiens]
Length = 1821
Score = 37.4 bits (85), Expect = 0.020
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 219 IQQVTATSSKWAQFVLPPRKSSHVDSEQPRSLQRDPRPAGPAQAKQGTPRAQASREGLSR 278
+Q V W PR+ + ++ +P Q+ R PAQ ++ TP Q ++ R
Sbjct: 82 LQPVERAQPGWGS----PRRPTEAEARRPSRAQQSRRVQPPAQTRRSTPLGQ--QQPAPR 135
Query: 279 PTAAVQLPRATHPVTSGSERP 299
AA LPR P SG+ P
Sbjct: 136 TRAAPALPRLGTPQRSGAAPP 156
>gi|187960090 SMG5 homolog nonsense mediated mRNA decay factor [Homo
sapiens]
Length = 1016
Score = 37.4 bits (85), Expect = 0.020
Identities = 52/206 (25%), Positives = 78/206 (37%), Gaps = 40/206 (19%)
Query: 121 EGTGVCFSKQPSSKMEEPGPRFSQDLP------RKRKWSRSTV-----QPP-------CS 162
+GT SK+P K EEP P P + RK+SR + PP S
Sbjct: 416 DGTDEPESKEPVEKEEEPDPEPPPVTPQVGEGRKSRKFSRLSCLRRRRHPPKVGDDSDLS 475
Query: 163 RGVQDSGGSEVAWGPQKGQAGLTWKVKQGSSPCLQENSADCSAGELRGPGKELWSPIQQV 222
G + + A + +G ++ G + E ++ ++ E R S ++ +
Sbjct: 476 EGFESDSSHDSARASEGSDSGSDKSLEGGGTAFDAETDSEMNSQESR-------SDLEDM 528
Query: 223 TATSSKWAQFVLPPRKSSHVDSEQPRSLQRDPRPAGPAQAK-------QGTPRAQASREG 275
+ + PPR SE P SL P GP++A T Q R
Sbjct: 529 EEEEGTRSPTLEPPRGR----SEAPDSLN---GPLGPSEASIASNLQAMSTQMFQTKRCF 581
Query: 276 LSRPT-AAVQLPRATHPVTSGSERPC 300
PT + + L T+P TS S RPC
Sbjct: 582 RLAPTFSNLLLQPTTNPHTSASHRPC 607
>gi|112821681 G protein-regulated inducer of neurite outgrowth 1
[Homo sapiens]
Length = 1008
Score = 37.4 bits (85), Expect = 0.020
Identities = 31/121 (25%), Positives = 45/121 (37%), Gaps = 10/121 (8%)
Query: 73 SLEETVSASEEENVGHQQAGNVKQQEKSQPSESRWLKYLEKDSQ-------ELELEGTGV 125
SLE+T +S + + G+ + E ++ SE R E S + +LE G
Sbjct: 714 SLEKTKPSSSSRQLDRKALGSARSPEGARGSEGRVEPKAEPVSSTEASSLGQKDLEAAGA 773
Query: 126 CFSKQPSSKMEEPGPRFSQDLPRKRKWSRSTVQPPCSRGVQDSGGS---EVAWGPQKGQA 182
S P + PGPR + + W S PP +G VA P Q
Sbjct: 774 ERSPCPEAAAPPPGPRTRDNFTKAPSWEASAPPPPREDAGTQAGAQACVSVAVSPMSPQD 833
Query: 183 G 183
G
Sbjct: 834 G 834
>gi|148833506 obscurin, cytoskeletal calmodulin and titin-interacting
RhoGEF isoform b [Homo sapiens]
Length = 7968
Score = 36.6 bits (83), Expect = 0.034
Identities = 29/102 (28%), Positives = 40/102 (39%), Gaps = 11/102 (10%)
Query: 236 PRKSSHVDSEQPRSLQRD----PRPA----GPAQAKQGTPRAQASREGLSRPTAAVQLPR 287
P +H+ SL+ D PRP+ G AQ P A + P + QLP
Sbjct: 6950 PASGTHLAPGHSHSLEHDSPSTPRPSSEACGEAQRLPSAPSGGAPIRDMGHPQGSKQLPS 7009
Query: 288 AT-HPVTSGSERPCGKTSWDARTPWA--EGGPLVLEAQNPRP 326
HP T+ ERP + W P+ + G E +P P
Sbjct: 7010 TGGHPGTAQPERPSPDSPWGQPAPFCHPKQGSAPQEGCSPHP 7051
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 35.4 bits (80), Expect = 0.075
Identities = 60/262 (22%), Positives = 96/262 (36%), Gaps = 39/262 (14%)
Query: 76 ETVSASEEENVGHQQAGNVKQ-QEKSQPSESRWLKY-LEKDSQELELEGTGVCFSKQPSS 133
+++S+ + E + Q G K Q +Q ++ K L++D+ + + + +
Sbjct: 237 KSISSQQPEKIKSQPPGTGKPIQGPTQTPQTDHAKLPLQRDASRPQTKQADIVRGESVKP 296
Query: 134 KMEEPG-PRFSQDLPRKRKWSRSTVQPPCSRGVQDSGGSEVAWGPQKGQA---GLTWKVK 189
+ P P Q P K PP Q G + GP K A GLT +
Sbjct: 297 SLPSPSKPPIQQPTPGK---------PPA----QQPGHEKSQPGPAKPPAQPSGLTKPLA 343
Query: 190 QGSS---PCLQENSADCSAGELRGPGKELWSPIQQVTATSSKWAQFVLPPRKSSHVDSEQ 246
Q P +Q + GP K P QQ T S+ P K+
Sbjct: 344 QQPGTVKPPVQPPGTTKPPAQPLGPAKP---PAQQ---TGSEKPSSEQPGPKALAQPPGV 397
Query: 247 PRSLQRDPRPAGPAQAKQGTPRAQASREGLSRPTAAVQLPRATHPVTSGSERPCGKTSWD 306
++ + P PA P + GTP+ A + GL P +A P + ++P
Sbjct: 398 GKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQSPA------KAPGPTKTPVQQP-----GP 446
Query: 307 ARTPWAEGGPLVLEAQNPRPTR 328
+ P + GP AQ PT+
Sbjct: 447 GKIPAQQAGPGKTSAQQTGPTK 468
Score = 32.0 bits (71), Expect = 0.83
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 235 PPRK--SSHVDSEQPRSLQ---RDPRPAGPAQAKQGTPRAQASREGLSRPTAAVQLPRAT 289
PP++ S+ S+QP S + + P PA P+ + G+ + + + G ++P+A Q P
Sbjct: 490 PPQQPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSA--QQPSPA 547
Query: 290 HPVTSGSERPCGKT 303
P S +P +T
Sbjct: 548 KPSAQQSTKPVSQT 561
Score = 30.8 bits (68), Expect = 1.8
Identities = 45/221 (20%), Positives = 71/221 (32%), Gaps = 28/221 (12%)
Query: 128 SKQPSSKMEEPGPR--------FSQDLPRKRKWSRSTVQPPCS-----------RGVQDS 168
++QP + +PGP ++ L ++ + VQPP + +
Sbjct: 316 AQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTVKPPVQPPGTTKPPAQPLGPAKPPAQQ 375
Query: 169 GGSEVAWGPQKGQAGLTWKVKQGSSPCLQENSADCSAGELRGPGKELWSPIQQVTATSSK 228
GSE Q G L G +P Q A ++ P P Q A +
Sbjct: 376 TGSEKPSSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQSPAKA-- 433
Query: 229 WAQFVLPPRKSSHVDSEQPRSLQRDPRPAGPAQAKQGTPRAQASR-EGLSRPTAAVQLPR 287
P + V P + G A+Q P S+ G ++P P
Sbjct: 434 ------PGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPA 487
Query: 288 ATHPVTSGSERPCGKTSWDARTPWAEGGPLVLEAQNPRPTR 328
P GS +P + + P + GP Q P T+
Sbjct: 488 KPPPQQPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTK 528
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 35.4 bits (80), Expect = 0.075
Identities = 60/262 (22%), Positives = 96/262 (36%), Gaps = 39/262 (14%)
Query: 76 ETVSASEEENVGHQQAGNVKQ-QEKSQPSESRWLKY-LEKDSQELELEGTGVCFSKQPSS 133
+++S+ + E + Q G K Q +Q ++ K L++D+ + + + +
Sbjct: 237 KSISSQQPEKIKSQPPGTGKPIQGPTQTPQTDHAKLPLQRDASRPQTKQADIVRGESVKP 296
Query: 134 KMEEPG-PRFSQDLPRKRKWSRSTVQPPCSRGVQDSGGSEVAWGPQKGQA---GLTWKVK 189
+ P P Q P K PP Q G + GP K A GLT +
Sbjct: 297 SLPSPSKPPIQQPTPGK---------PPA----QQPGHEKSQPGPAKPPAQPSGLTKPLA 343
Query: 190 QGSS---PCLQENSADCSAGELRGPGKELWSPIQQVTATSSKWAQFVLPPRKSSHVDSEQ 246
Q P +Q + GP K P QQ T S+ P K+
Sbjct: 344 QQPGTVKPPVQPPGTTKPPAQPLGPAKP---PAQQ---TGSEKPSSEQPGPKALAQPPGV 397
Query: 247 PRSLQRDPRPAGPAQAKQGTPRAQASREGLSRPTAAVQLPRATHPVTSGSERPCGKTSWD 306
++ + P PA P + GTP+ A + GL P +A P + ++P
Sbjct: 398 GKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQSPA------KAPGPTKTPVQQP-----GP 446
Query: 307 ARTPWAEGGPLVLEAQNPRPTR 328
+ P + GP AQ PT+
Sbjct: 447 GKIPAQQAGPGKTSAQQTGPTK 468
Score = 32.0 bits (71), Expect = 0.83
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 235 PPRK--SSHVDSEQPRSLQ---RDPRPAGPAQAKQGTPRAQASREGLSRPTAAVQLPRAT 289
PP++ S+ S+QP S + + P PA P+ + G+ + + + G ++P+A Q P
Sbjct: 490 PPQQPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSA--QQPSPA 547
Query: 290 HPVTSGSERPCGKT 303
P S +P +T
Sbjct: 548 KPSAQQSTKPVSQT 561
Score = 30.8 bits (68), Expect = 1.8
Identities = 45/221 (20%), Positives = 71/221 (32%), Gaps = 28/221 (12%)
Query: 128 SKQPSSKMEEPGPR--------FSQDLPRKRKWSRSTVQPPCS-----------RGVQDS 168
++QP + +PGP ++ L ++ + VQPP + +
Sbjct: 316 AQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTVKPPVQPPGTTKPPAQPLGPAKPPAQQ 375
Query: 169 GGSEVAWGPQKGQAGLTWKVKQGSSPCLQENSADCSAGELRGPGKELWSPIQQVTATSSK 228
GSE Q G L G +P Q A ++ P P Q A +
Sbjct: 376 TGSEKPSSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQSPAKA-- 433
Query: 229 WAQFVLPPRKSSHVDSEQPRSLQRDPRPAGPAQAKQGTPRAQASR-EGLSRPTAAVQLPR 287
P + V P + G A+Q P S+ G ++P P
Sbjct: 434 ------PGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPA 487
Query: 288 ATHPVTSGSERPCGKTSWDARTPWAEGGPLVLEAQNPRPTR 328
P GS +P + + P + GP Q P T+
Sbjct: 488 KPPPQQPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTK 528
>gi|62243586 ubiquitin-specific protease 21 [Homo sapiens]
Length = 565
Score = 35.4 bits (80), Expect = 0.075
Identities = 34/105 (32%), Positives = 40/105 (38%), Gaps = 14/105 (13%)
Query: 234 LPPRKSSHVDSEQPRSLQRD----PRPAGPAQAKQGTPRAQASREGLSRPTAAVQLPRAT 289
LPPR + + L R PRP GP +A G P G PT A+ LP T
Sbjct: 52 LPPRPGLPDERLKKLELGRGRTSGPRPRGPLRADHGVP-----LPGSPPPTVALPLPSRT 106
Query: 290 H-----PVTSGSERPCGKTSWDARTPWAEGGPLVLEAQNPRPTRL 329
+ V+SG RP G R G L A P P L
Sbjct: 107 NLARSKSVSSGDLRPMGIALGGHRGTGELGAALSRLALRPEPPTL 151
>gi|74027267 ubiquitin-specific protease 21 [Homo sapiens]
Length = 565
Score = 35.4 bits (80), Expect = 0.075
Identities = 34/105 (32%), Positives = 40/105 (38%), Gaps = 14/105 (13%)
Query: 234 LPPRKSSHVDSEQPRSLQRD----PRPAGPAQAKQGTPRAQASREGLSRPTAAVQLPRAT 289
LPPR + + L R PRP GP +A G P G PT A+ LP T
Sbjct: 52 LPPRPGLPDERLKKLELGRGRTSGPRPRGPLRADHGVP-----LPGSPPPTVALPLPSRT 106
Query: 290 H-----PVTSGSERPCGKTSWDARTPWAEGGPLVLEAQNPRPTRL 329
+ V+SG RP G R G L A P P L
Sbjct: 107 NLARSKSVSSGDLRPMGIALGGHRGTGELGAALSRLALRPEPPTL 151
>gi|38569493 potassium voltage-gated channel, subfamily H
(eag-related), member 3 [Homo sapiens]
Length = 1083
Score = 35.4 bits (80), Expect = 0.075
Identities = 38/135 (28%), Positives = 52/135 (38%), Gaps = 8/135 (5%)
Query: 196 LQENSADCSAGEL--RGPGKELWSPIQQVTATSSKWAQFVLPPRKSSHVDSEQPRSLQRD 253
L+E D G P E SP+ TSS A +L PR++ + +PR R
Sbjct: 728 LEEKETDGEQGPTVSPAPADEPSSPLLSPGCTSSSSAAKLLSPRRT----APRPRLGGRG 783
Query: 254 -PRPAGPAQAKQGTPRAQASREGLSRPTAAVQLPRATHP-VTSGSERPCGKTSWDARTPW 311
P AG +A+ G + EGL P +P P V G E CG
Sbjct: 784 RPGRAGALKAEAGPSAPPRALEGLRLPPMPWNVPPDLSPRVVDGIEDGCGSDQPKFSFRV 843
Query: 312 AEGGPLVLEAQNPRP 326
+ GP + +P P
Sbjct: 844 GQSGPECSSSPSPGP 858
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 35.0 bits (79), Expect = 0.098
Identities = 62/290 (21%), Positives = 103/290 (35%), Gaps = 33/290 (11%)
Query: 53 RRHVQKLNLLQGQVSELPLRSLEETVSASEEENVGHQQAGNVKQQEKSQPSESRWLKYLE 112
R++ +++ G+ E P EE S G + + + EKS+ + + + E
Sbjct: 4 RQNKDSMSMRSGRKKEAP-GPREELRSRGRASPGGVSTSSSDGKAEKSRQTAKK-ARVEE 61
Query: 113 KDSQELELEGTGVCFSKQPSSKMEEPGP-RFSQDLPRKRKWSRSTVQPPCSRGVQDSGGS 171
+ ++ +G S+ S + P + Q+LPR + S S + R + D G S
Sbjct: 62 ASTPKVNKQGRSEEISESESEETNAPKKTKTEQELPRPQ--SPSDLDSLDGRSLNDDGSS 119
Query: 172 EVAWGPQKGQAGLTWKVKQGSSPCLQENSADCSAGELRGPGK-----ELWSPIQQVTATS 226
+ Q ++ GS EN +D S+G +GP + L+ P Q ++
Sbjct: 120 DPRDIDQDNRSTSPSIYSPGSV----ENDSDSSSGLSQGPARPYHPPPLFPPSPQPPDST 175
Query: 227 SKWAQFVLPPRKS-----SHVDSEQPRSLQRDPRPAGPAQAKQ----GT----------P 267
+ + P S H E P S P P Q GT P
Sbjct: 176 PRQPEASFEPHPSVTPTGYHAPMEPPTSRMFQAPPGAPPPHPQLYPGGTGGVLSGPPMGP 235
Query: 268 RAQASREGLSRPTAAVQLPRATHPVTSGSERPCGKTSWDARTPWAEGGPL 317
+ + + P Q P T P++ S G T GG L
Sbjct: 236 KGGGAASSVGGPNGGKQHPPPTTPISVSSSGASGAPPTKPPTTPVGGGNL 285
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 35.0 bits (79), Expect = 0.098
Identities = 62/290 (21%), Positives = 103/290 (35%), Gaps = 33/290 (11%)
Query: 53 RRHVQKLNLLQGQVSELPLRSLEETVSASEEENVGHQQAGNVKQQEKSQPSESRWLKYLE 112
R++ +++ G+ E P EE S G + + + EKS+ + + + E
Sbjct: 4 RQNKDSMSMRSGRKKEAP-GPREELRSRGRASPGGVSTSSSDGKAEKSRQTAKK-ARVEE 61
Query: 113 KDSQELELEGTGVCFSKQPSSKMEEPGP-RFSQDLPRKRKWSRSTVQPPCSRGVQDSGGS 171
+ ++ +G S+ S + P + Q+LPR + S S + R + D G S
Sbjct: 62 ASTPKVNKQGRSEEISESESEETNAPKKTKTEQELPRPQ--SPSDLDSLDGRSLNDDGSS 119
Query: 172 EVAWGPQKGQAGLTWKVKQGSSPCLQENSADCSAGELRGPGK-----ELWSPIQQVTATS 226
+ Q ++ GS EN +D S+G +GP + L+ P Q ++
Sbjct: 120 DPRDIDQDNRSTSPSIYSPGSV----ENDSDSSSGLSQGPARPYHPPPLFPPSPQPPDST 175
Query: 227 SKWAQFVLPPRKS-----SHVDSEQPRSLQRDPRPAGPAQAKQ----GT----------P 267
+ + P S H E P S P P Q GT P
Sbjct: 176 PRQPEASFEPHPSVTPTGYHAPMEPPTSRMFQAPPGAPPPHPQLYPGGTGGVLSGPPMGP 235
Query: 268 RAQASREGLSRPTAAVQLPRATHPVTSGSERPCGKTSWDARTPWAEGGPL 317
+ + + P Q P T P++ S G T GG L
Sbjct: 236 KGGGAASSVGGPNGGKQHPPPTTPISVSSSGASGAPPTKPPTTPVGGGNL 285
>gi|145580582 uromodulin-like 1 isoform 2 precursor [Homo sapiens]
Length = 1446
Score = 35.0 bits (79), Expect = 0.098
Identities = 51/201 (25%), Positives = 71/201 (35%), Gaps = 24/201 (11%)
Query: 138 PGPRFSQDLPRK-RKWSRSTVQPPCSRGVQDSGGSEVAWGPQKGQAGLTWKVK------- 189
P P + Q P + W T +P RG G + V + G+ +V
Sbjct: 590 PSPGYPQGTPAAGQAW---TPEPSPRRG----GSNVVGYDRNNTGKGVEQEVPSTAPGLG 642
Query: 190 --QGSSPCLQENSADCSAGELRGPGKELWSPIQQVTATSSKWAQFVLPPRKSSHVDSEQP 247
QGS + + S G LR SP Q+ T+ S +Q R +SH +S Q
Sbjct: 643 MDQGSPSQVNPSQGSPSQGSLRQESTSQASPSQRSTSQGSP-SQVNPSQRSTSHANSSQG 701
Query: 248 RSLQRDPRPAGPAQAKQGTPRAQASREGLSRPTAAVQLPRATHPVTSGSERPCGKTSWDA 307
Q P P+Q T +A S P+AT S P G T
Sbjct: 702 SPSQGSPSQESPSQG--STSQASPSHRNTIGVIGTTSSPKAT---GSTHSFPPGATDGPL 756
Query: 308 RTPWAEGGPLVLEAQN-PRPT 327
P G ++E + P PT
Sbjct: 757 ALPGQLQGNSIMEPPSWPSPT 777
>gi|151301154 mucin 6, gastric [Homo sapiens]
Length = 2439
Score = 34.3 bits (77), Expect = 0.17
Identities = 46/191 (24%), Positives = 63/191 (32%), Gaps = 43/191 (22%)
Query: 155 STVQPPCSRGVQDSGGSEVAWGPQKGQAGLTWKVKQGSSPCLQENSADCSAGELRGPGKE 214
+T QPP + + +G P G + T + + P N P
Sbjct: 1200 TTPQPPTTPQLPTTGSRPTQVWPMTGTS-TTIGLLSSTGPSPSSNHT---------PASP 1249
Query: 215 LWSPIQQVTATSSKWAQFVLPPRKSSHVDSEQPRSLQRDPRPAGPAQAKQGTPRAQASRE 274
+P+ T TSSK P SS E PR P A QA G P R
Sbjct: 1250 TQTPLLPATLTSSK-------PTASS---GEPPR-----PTTAVTPQATSGLPPTATLRS 1294
Query: 275 GLSRPTAAVQLPRAT----HPVTSGSERPCGKTSWDARTPWAEG--------------GP 316
++PT RAT P T+ + + +T+ TP G G
Sbjct: 1295 TATKPTVTQATTRATASTASPATTSTAQSTTRTTMTLPTPATSGTSPTLPKSTNQELPGT 1354
Query: 317 LVLEAQNPRPT 327
+ PRPT
Sbjct: 1355 TATQTTGPRPT 1365
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 34.3 bits (77), Expect = 0.17
Identities = 37/153 (24%), Positives = 55/153 (35%), Gaps = 15/153 (9%)
Query: 141 RFSQDLPRKRKWSRSTVQPPC--------SRGVQDSGGSEVAWGP------QKGQAGLTW 186
R S PR+R R PP +R DSG A GP ++G G
Sbjct: 397 RSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGK 456
Query: 187 KVKQGSSPCLQENSADCSAGELRGPGKELWSPIQQVTATSSKWAQFVLPPRKSSHVDSEQ 246
+ K+ +++ R G E S + W+ P + S ++
Sbjct: 457 RAKERPPRARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSRSAEKR 516
Query: 247 PRSLQRDPRPAGP-AQAKQGTPRAQASREGLSR 278
P S R P P P ++ K G RA+ S +R
Sbjct: 517 PHSPSRSPSPKKPLSRDKDGEGRARHSEAEATR 549
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 34.3 bits (77), Expect = 0.17
Identities = 39/173 (22%), Positives = 63/173 (36%), Gaps = 12/173 (6%)
Query: 158 QPPCSRGVQDSGGSEVAWGPQKGQAGLTWKVKQGSSPCLQENSADCSAGELRGPGKELWS 217
+PP + G E G A + + +E +A +A RGPG+ +
Sbjct: 1279 RPPWEGADAGAAGGEAGGAGAPGPAEEDGEDEDEDEEEDEEAAAPGAAAGPRGPGRARAA 1338
Query: 218 PIQQVTATSSKWAQFVLPPRKSSHVDSEQPRSLQRDPRPA-----GPAQA---KQGTPR- 268
P+ V +++ A L S +++P + + + G Q TP
Sbjct: 1339 PVPVVVSSADADAARPLRGLLKSPRGADEPEDSELERKRKMVSFHGDVTVYLFDQETPTN 1398
Query: 269 ---AQASREGLSRPTAAVQLPRATHPVTSGSERPCGKTSWDARTPWAEGGPLV 318
QA EG + P+ P HP T G P + + WAE PL+
Sbjct: 1399 ELSVQAPPEGDTDPSTPPAPPTPPHPATPGDGFPSNDSGFGGSFEWAEDFPLL 1451
Score = 29.3 bits (64), Expect = 5.4
Identities = 34/120 (28%), Positives = 47/120 (39%), Gaps = 16/120 (13%)
Query: 156 TVQPPCSRGVQDSGGSEVAWGPQKGQAGLTWKVKQGSSPCLQENSADCSAGELRGPGKEL 215
T++P R ++GG+ A P G+ L GS + G GPG +
Sbjct: 1112 TLEPGTERRAPETGGAPRA--PGAGRLDL------GSGGRAPVGTGTAPGG---GPGSGV 1160
Query: 216 WSPIQQVTATSSKWAQFVLPPRKSSHVDSEQPRSLQRDPRPAGPAQAKQGTPRAQASREG 275
+ V T + LPP + QPR L+ P A P A +G P A SR G
Sbjct: 1161 DAKAGWVDNTRPQPPPPPLPPPPEA-----QPRRLEPAPPRARPEVAPEGEPGAPDSRAG 1215
>gi|7706687 Enah/Vasp-like [Homo sapiens]
Length = 418
Score = 34.3 bits (77), Expect = 0.17
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 247 PRSLQRDPRPAGPAQAKQGTPRAQASREGLSRPTAAVQLPRATHPV-TSGSERPCGKTSW 305
P P P PA QG+ ++S GL+ A +L R P SG P G +
Sbjct: 196 PTGATPPPPPPLPAGGAQGSSHDESSMSGLAAAIAGAKLRRVQRPEDASGGSSPSGTSKS 255
Query: 306 DARTPWAEGG 315
DA + GG
Sbjct: 256 DANRASSGGG 265
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 34.3 bits (77), Expect = 0.17
Identities = 51/263 (19%), Positives = 96/263 (36%), Gaps = 9/263 (3%)
Query: 43 AYGEGSGADCRRHVQKLNLLQGQVSELPLRSLEETVSASEEENVGHQQAGNVKQQEKSQP 102
+Y +GS D +R ++ Q + P + +S + +Q K++++ +
Sbjct: 144 SYVDGSSFDPQRRAREAK----QPAPEPPKPYSLVRESSSSRSPTPKQKKKKKKKDRGRR 199
Query: 103 SESRWLKYLEKDSQELELEGTGVCFSKQPSSKMEEPGPRFSQ-DLPRKRKWSRSTVQPPC 161
SES + K S + + + S+ K P P+ + +KRK SRST P
Sbjct: 200 SESSSPRRERKKSSKKKKHRSE---SESKKRKHRSPTPKSKRKSKDKKRKRSRSTTPAPK 256
Query: 162 SRGVQDSGGSEVAWGPQKGQAGLTWKVKQGSSPCLQENSADCSAGELRGPGKELWSPIQQ 221
SR S ++ A ++ + + L S ++G RG G +S
Sbjct: 257 SRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPASGR-RGEGDAPFSEPGT 315
Query: 222 VTATSSKWAQFVLPPRKSSHVDSEQPRSLQRDPRPAGPAQAKQGTPRAQASREGLSRPTA 281
+ + S + D ++ + + RP+ + P A L+
Sbjct: 316 TSTQRPSSPETATKQPSSPYEDKDKDKKEKSATRPSPSPERSSTGPEPPAPTPLLAERHG 375
Query: 282 AVQLPRATHPVTSGSERPCGKTS 304
P AT P++ P + S
Sbjct: 376 GSPQPLATTPLSQEPVNPPSEAS 398
>gi|10863903 thyroid hormone receptor interactor 12 [Homo sapiens]
Length = 1992
Score = 33.9 bits (76), Expect = 0.22
Identities = 43/154 (27%), Positives = 54/154 (35%), Gaps = 12/154 (7%)
Query: 155 STVQPPCSRGVQDSGGSEVAWGPQKGQAGLTWKVKQGSSPCLQENSADCSAGELRGPGKE 214
ST+ S S S VA G +VKQG S S+ R +E
Sbjct: 191 STITDSSSAASTSSSSSAVASASSTVPPGA--RVKQGKDQNKARRSRSASSPSPRRSSRE 248
Query: 215 LWSPIQQVTATSSK--WAQFVLPPRKSSHVDSEQPRSLQRDPRPAGPA--QAKQGTPRAQ 270
Q T SSK WA P P S + + GP+ QAK + R
Sbjct: 249 ---KEQSKTGGSSKFDWAARFSPKVSLPKTKLSLPGSSKSETSKPGPSGLQAKLASLRKS 305
Query: 271 ASREGLSRPTAAVQLPRATHPVTSGSERPCGKTS 304
+ S P L R+T T+GS C TS
Sbjct: 306 TKKRSESPPAELPSLRRSTRQKTTGS---CASTS 336
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 33.9 bits (76), Expect = 0.22
Identities = 50/197 (25%), Positives = 67/197 (34%), Gaps = 32/197 (16%)
Query: 122 GTGVCFSKQPSSKMEEPGPRFSQDLPRKRKWSRSTVQPPCSRGVQDSGGSEVAWGPQKGQ 181
G C +S + P S+ PR + T+ P S G G+ P KG
Sbjct: 546 GAAPCPPNPANSWVPGLSPGGSRRPPRSPE---RTLSP--SSGYSSQSGTPTL--PPKGL 598
Query: 182 AGLTWKVKQGSSPCLQENSADCSAGELRGPGKELWSPIQQVTATSSKWA----------- 230
AG +SP + LR PG + S + + ++SS A
Sbjct: 599 AG------PPASPGKAQPPKPERVTSLRSPGASVSSSLTSLCSSSSDPAPSDRSGPQILT 652
Query: 231 ----QFVLPPRKSSHVDSEQPRSLQRDPRPAGPAQAKQGT---PRAQASREGLSRPTAAV 283
+FV+PP P S R P PA PA A P + S PT
Sbjct: 653 PLGDRFVIPPHPKVPAPFSPPPSKPRSPNPAAPALAAPAVVPGPVSTTDASPQSPPTPQT 712
Query: 284 QL-PRATHPVTSGSERP 299
L P PV S + P
Sbjct: 713 TLTPLQESPVISKDQSP 729
>gi|45120119 microtubule associated serine/threonine kinase 1 [Homo
sapiens]
Length = 1570
Score = 33.5 bits (75), Expect = 0.28
Identities = 41/150 (27%), Positives = 63/150 (42%), Gaps = 22/150 (14%)
Query: 140 PRFSQDLPRKRKWSRSTVQPPCS------RGVQDSGGSEVAWGPQKGQAGLTWKVK--QG 191
PRFS+ + S+ + P + R G E G ++G GLT + K +G
Sbjct: 709 PRFSKVYSSMEQLSQHEPKTPVAAAGSSKREPSTKGPEEKVAGKREGLGGLTLREKTWRG 768
Query: 192 SSPCLQENSADCSAGELRGPGKELWSPIQQVTATSSKWAQFVLPPRKSSHVDSEQPRSLQ 251
SP ++ SA A L G E P+ +++ + P R S+ + E L+
Sbjct: 769 GSPEIKRFSAS-EASFLEG---EASPPL----GARRRFSALLEPSRFSAPQEDEDEARLR 820
Query: 252 RDPR----PAGPAQAKQGTPRAQASREGLS 277
R PR PAG A+ P+ + EG S
Sbjct: 821 RPPRPSSDPAGSLDAR--APKEETQGEGTS 848
>gi|22748699 hypothetical protein LOC121273 [Homo sapiens]
Length = 127
Score = 33.5 bits (75), Expect = 0.28
Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 11/111 (9%)
Query: 194 PCL-QENSADCSAGELRGPG-KELWSPIQ-QVTATSSKWAQFVLPPRKSSHVDSEQPRSL 250
PC QE + ++ + R +E P + QVT T + W Q + V + + L
Sbjct: 5 PCQDQEQKVEMTSKQQRSTSIEETMRPQEKQVTITETLWDQVLT-------VFKDIQKEL 57
Query: 251 QRDPRPAGPAQAKQGTPRAQASREGLSRPTAAVQLPRATHPVTSGSERPCG 301
Q D R G + TP A R G RP ++ P+ S E+P G
Sbjct: 58 QEDARIRGMSNCSM-TPMTSAPRTGSIRPPDSLMTPKLRRLQFSSGEQPSG 107
>gi|189011568 adenomatous polyposis coli [Homo sapiens]
Length = 2843
Score = 32.7 bits (73), Expect = 0.48
Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 21/133 (15%)
Query: 194 PCLQENSADCSAGELRGPGKEL---WSPIQQVTATSSKWA-----QFVLPP--RKSSHV- 242
P ++ +S+ S +GP + SP + TAT+S + L P R++S +
Sbjct: 2234 PGVRNSSSSTSPVSKKGPPLKTPASKSPSEGQTATTSPRGAKPSVKSELSPVARQTSQIG 2293
Query: 243 -DSEQP-RSLQRDPRPAGPAQAKQGTP-------RAQASREGLSRPTAAVQLPRATHPVT 293
S+ P RS RD P+ PAQ P R G+S P QLPR + P T
Sbjct: 2294 GSSKAPSRSGSRDSTPSRPAQQPLSRPIQSPGRNSISPGRNGISPPNKLSQLPRTSSPST 2353
Query: 294 SGSERP-CGKTSW 305
+ ++ GK S+
Sbjct: 2354 ASTKSSGSGKMSY 2366
>gi|189011566 adenomatous polyposis coli [Homo sapiens]
Length = 2843
Score = 32.7 bits (73), Expect = 0.48
Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 21/133 (15%)
Query: 194 PCLQENSADCSAGELRGPGKEL---WSPIQQVTATSSKWA-----QFVLPP--RKSSHV- 242
P ++ +S+ S +GP + SP + TAT+S + L P R++S +
Sbjct: 2234 PGVRNSSSSTSPVSKKGPPLKTPASKSPSEGQTATTSPRGAKPSVKSELSPVARQTSQIG 2293
Query: 243 -DSEQP-RSLQRDPRPAGPAQAKQGTP-------RAQASREGLSRPTAAVQLPRATHPVT 293
S+ P RS RD P+ PAQ P R G+S P QLPR + P T
Sbjct: 2294 GSSKAPSRSGSRDSTPSRPAQQPLSRPIQSPGRNSISPGRNGISPPNKLSQLPRTSSPST 2353
Query: 294 SGSERP-CGKTSW 305
+ ++ GK S+
Sbjct: 2354 ASTKSSGSGKMSY 2366
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.128 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,344,003
Number of Sequences: 37866
Number of extensions: 876803
Number of successful extensions: 3384
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 197
Number of HSP's that attempted gapping in prelim test: 3250
Number of HSP's gapped (non-prelim): 332
length of query: 343
length of database: 18,247,518
effective HSP length: 103
effective length of query: 240
effective length of database: 14,347,320
effective search space: 3443356800
effective search space used: 3443356800
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.