Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 63054864
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|63054864 phosphoprotein associated with glycosphingolipid
microdomains 1 [Homo sapiens]
(432 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|63054864 phosphoprotein associated with glycosphingolipid mic... 863 0.0
gi|146229340 mutated in colorectal cancers isoform 1 [Homo sapiens] 40 0.004
gi|150170670 piccolo isoform 2 [Homo sapiens] 39 0.007
gi|150378539 piccolo isoform 1 [Homo sapiens] 39 0.007
gi|55741677 SET domain containing 1A [Homo sapiens] 39 0.012
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 39 0.012
gi|16332372 cell division cycle 2-like 1 (PITSLRE proteins) isof... 38 0.016
gi|16332370 cell division cycle 2-like 1 (PITSLRE proteins) isof... 38 0.016
gi|16332364 cell division cycle 2-like 1 (PITSLRE proteins) isof... 38 0.016
gi|16332362 cell division cycle 2-like 1 (PITSLRE proteins) isof... 38 0.016
gi|16332358 cell division cycle 2-like 1 (PITSLRE proteins) isof... 38 0.016
gi|148763345 cell division cycle 2-like 2 isoform 4 [Homo sapiens] 37 0.027
gi|148763347 cell division cycle 2-like 2 isoform 1 [Homo sapiens] 37 0.027
gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens] 37 0.027
gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens] 37 0.027
gi|38372901 Sp1 transcription factor isoform a [Homo sapiens] 37 0.035
gi|218751903 Sp1 transcription factor isoform b [Homo sapiens] 37 0.035
gi|4505129 mutated in colorectal cancers isoform 2 [Homo sapiens] 37 0.035
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens] 37 0.045
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa... 37 0.045
gi|16332360 cell division cycle 2-like 1 (PITSLRE proteins) isof... 37 0.045
gi|23111062 splicing factor, arginine/serine-rich 8 [Homo sapiens] 36 0.059
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot... 36 0.078
gi|169166499 PREDICTED: similar to ribonucleic acid binding prot... 36 0.078
gi|113415498 PREDICTED: similar to ribonucleic acid binding prot... 36 0.078
gi|88973230 PREDICTED: similar to ribonucleic acid binding prote... 36 0.078
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens] 36 0.078
gi|23111036 sorting nexin 1 isoform c [Homo sapiens] 35 0.10
gi|23111034 sorting nexin 1 isoform a [Homo sapiens] 35 0.10
gi|42518068 trans-golgi network protein 2 [Homo sapiens] 35 0.10
>gi|63054864 phosphoprotein associated with glycosphingolipid
microdomains 1 [Homo sapiens]
Length = 432
Score = 863 bits (2229), Expect = 0.0
Identities = 432/432 (100%), Positives = 432/432 (100%)
Query: 1 MGPAGSLLGSGQMQITLWGSLAAVAIFFVITFLIFLCSSCDREKKPRQHSGDHENLMNVP 60
MGPAGSLLGSGQMQITLWGSLAAVAIFFVITFLIFLCSSCDREKKPRQHSGDHENLMNVP
Sbjct: 1 MGPAGSLLGSGQMQITLWGSLAAVAIFFVITFLIFLCSSCDREKKPRQHSGDHENLMNVP 60
Query: 61 SDKEMFSRSVTSLATDAPASSEQNGALTNGDILSEDSTLTCMQHYEEVQTSASDLLDSQD 120
SDKEMFSRSVTSLATDAPASSEQNGALTNGDILSEDSTLTCMQHYEEVQTSASDLLDSQD
Sbjct: 61 SDKEMFSRSVTSLATDAPASSEQNGALTNGDILSEDSTLTCMQHYEEVQTSASDLLDSQD 120
Query: 121 STGKPKCHQSRELPRIPPESAVDTMLTARSVDGDQGLGMEGPYEVLKDSSSQENMVEDCL 180
STGKPKCHQSRELPRIPPESAVDTMLTARSVDGDQGLGMEGPYEVLKDSSSQENMVEDCL
Sbjct: 121 STGKPKCHQSRELPRIPPESAVDTMLTARSVDGDQGLGMEGPYEVLKDSSSQENMVEDCL 180
Query: 181 YETVKEIKEVAAAAHLEKGHSGKAKSTSASKELPGPQTEGKAEFAEYASVDRNKKCRQSV 240
YETVKEIKEVAAAAHLEKGHSGKAKSTSASKELPGPQTEGKAEFAEYASVDRNKKCRQSV
Sbjct: 181 YETVKEIKEVAAAAHLEKGHSGKAKSTSASKELPGPQTEGKAEFAEYASVDRNKKCRQSV 240
Query: 241 NVESILGNSCDPEEEAPPPVPVKLLDENENLQEKEGGEAEESATDTTSETNKRFSSLSYK 300
NVESILGNSCDPEEEAPPPVPVKLLDENENLQEKEGGEAEESATDTTSETNKRFSSLSYK
Sbjct: 241 NVESILGNSCDPEEEAPPPVPVKLLDENENLQEKEGGEAEESATDTTSETNKRFSSLSYK 300
Query: 301 SREEDPTLTEEEISAMYSSVNKPGQLVNKSGQSLTVPESTYTSIQGDPQRSPSSCNDLYA 360
SREEDPTLTEEEISAMYSSVNKPGQLVNKSGQSLTVPESTYTSIQGDPQRSPSSCNDLYA
Sbjct: 301 SREEDPTLTEEEISAMYSSVNKPGQLVNKSGQSLTVPESTYTSIQGDPQRSPSSCNDLYA 360
Query: 361 TVKDFEKTPNSTLPPAGRPSEEPEPDYEAIQTLNREEEKATLGTNGHHGLVPKENDYESI 420
TVKDFEKTPNSTLPPAGRPSEEPEPDYEAIQTLNREEEKATLGTNGHHGLVPKENDYESI
Sbjct: 361 TVKDFEKTPNSTLPPAGRPSEEPEPDYEAIQTLNREEEKATLGTNGHHGLVPKENDYESI 420
Query: 421 SDLQQGRDITRL 432
SDLQQGRDITRL
Sbjct: 421 SDLQQGRDITRL 432
>gi|146229340 mutated in colorectal cancers isoform 1 [Homo sapiens]
Length = 1019
Score = 40.0 bits (92), Expect = 0.004
Identities = 65/284 (22%), Positives = 110/284 (38%), Gaps = 22/284 (7%)
Query: 83 QNGALTNGDILSEDSTLTCMQHYEEVQTSASDLLDSQDSTGKPKCHQSRELPRIPPESAV 142
Q GA NG I +D T MQ E++ DL D++ K ++++
Sbjct: 79 QLGADENGKISFQDFTRCRMQLVREIRKEEVDLSAKSDNSCTKKLRDRIASWPTSSDNSL 138
Query: 143 DTMLTAR-SVDGDQGLGMEGPYEVLKDSSSQENMVEDCLYETVKEIKEVAAAAHLEKGHS 201
+ AR S + D G +V S+ Q+ L E AA H S
Sbjct: 139 GALSAARESWEYDSGARDLQSPDVQSQSALQK------LLEYGGSSLHQQAALHKLLTQS 192
Query: 202 GKAKSTSASKELPGPQTEGKAEFAEYAS--VDRNKKCRQSVNVESILGNSCDPEEEAPPP 259
++ L T A A V+ NK+ +Q+ +L +
Sbjct: 193 PHIGNSVGGSYLELANTLHSAALASLKGDIVELNKRLQQTERERDLLEKKLAKAQCEQS- 251
Query: 260 VPVKLLDENENLQEKEGGEAEESATDTTS---ETNKRFSSLSYKSREEDPTLTE--EEIS 314
L+ E+E++QE+ EE T+ S E NK+ L + E+ +E E+S
Sbjct: 252 ---HLMREHEDVQERTTLRYEERITELHSVIAELNKKIDRLQGTTIREEDEYSELRSELS 308
Query: 315 AMYSSVNKPGQLVNKSGQSLTVPESTYTSIQGDPQRSPSSCNDL 358
VN+ + +++ S+++PE+ T + D +C+DL
Sbjct: 309 QSQHEVNEDSRSMDQDQTSVSIPENQSTMVTAD----MDNCSDL 348
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 39.3 bits (90), Expect = 0.007
Identities = 50/244 (20%), Positives = 98/244 (40%), Gaps = 22/244 (9%)
Query: 162 PYEVLKDSSSQENMVEDCLYETVKEIKEVAAAAHLEKGHSGKAKSTSASKELPGPQTEGK 221
P V +SSSQ+ V + K+ +EV A EK K K T + +++P T +
Sbjct: 1136 PMPVPTESSSQKTAVPPQVKLVKKQEQEVKTEA--EKVILEKVKETLSMEKIPPMVTTDQ 1193
Query: 222 AEFAEYASVDRNKKCRQSVNVESILGNSCDPEEEAPPPVPVKLLDENENLQEKEGGEAEE 281
+ E + ++++K +E+ P P KL+ E E ++ +E E
Sbjct: 1194 KQ--EESKLEKDKASAL--------------QEKKPLPEEKKLIPEEEKIRSEEKKPLLE 1237
Query: 282 SATDTTSETNKRFSSLSYKSREEDPTLTEEEISAMYSSVNKPGQLVNKSGQSLTVPESTY 341
T + + + E+ L + ++ + G++ K+ Q P++
Sbjct: 1238 EKKPTPEDKKLLPEAKTSAPEEQKHDLLKSQVQIAEEKLE--GRVAPKTVQEGKQPQTKM 1295
Query: 342 TSI-QGDPQRSPSSCNDLYATVKDFEKTPNSTLPPAGRP-SEEPEPDYEAIQTLNREEEK 399
+ G PQ P + T+K+ + P + P P E+ E + + T + ++ K
Sbjct: 1296 EGLPSGTPQSLPKEDDKTTKTIKEQPQPPCTAKPDQVEPGKEKTEKEDDKSDTSSSQQPK 1355
Query: 400 ATLG 403
+ G
Sbjct: 1356 SPQG 1359
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 39.3 bits (90), Expect = 0.007
Identities = 50/244 (20%), Positives = 98/244 (40%), Gaps = 22/244 (9%)
Query: 162 PYEVLKDSSSQENMVEDCLYETVKEIKEVAAAAHLEKGHSGKAKSTSASKELPGPQTEGK 221
P V +SSSQ+ V + K+ +EV A EK K K T + +++P T +
Sbjct: 1136 PMPVPTESSSQKTAVPPQVKLVKKQEQEVKTEA--EKVILEKVKETLSMEKIPPMVTTDQ 1193
Query: 222 AEFAEYASVDRNKKCRQSVNVESILGNSCDPEEEAPPPVPVKLLDENENLQEKEGGEAEE 281
+ E + ++++K +E+ P P KL+ E E ++ +E E
Sbjct: 1194 KQ--EESKLEKDKASAL--------------QEKKPLPEEKKLIPEEEKIRSEEKKPLLE 1237
Query: 282 SATDTTSETNKRFSSLSYKSREEDPTLTEEEISAMYSSVNKPGQLVNKSGQSLTVPESTY 341
T + + + E+ L + ++ + G++ K+ Q P++
Sbjct: 1238 EKKPTPEDKKLLPEAKTSAPEEQKHDLLKSQVQIAEEKLE--GRVAPKTVQEGKQPQTKM 1295
Query: 342 TSI-QGDPQRSPSSCNDLYATVKDFEKTPNSTLPPAGRP-SEEPEPDYEAIQTLNREEEK 399
+ G PQ P + T+K+ + P + P P E+ E + + T + ++ K
Sbjct: 1296 EGLPSGTPQSLPKEDDKTTKTIKEQPQPPCTAKPDQVEPGKEKTEKEDDKSDTSSSQQPK 1355
Query: 400 ATLG 403
+ G
Sbjct: 1356 SPQG 1359
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 38.5 bits (88), Expect = 0.012
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 13/128 (10%)
Query: 267 ENENLQEKEGGEAEESATDTTSETNKRFSSLSYKSREEDPTLTEEEISAMYSSVNKPGQL 326
EN++ + E + S++ ++S ++ SS S +S ED EEE A S + P +
Sbjct: 1026 ENDSTSDSESSSSSSSSSSSSSSSSSSSSSSSSESSSEDE--EEEERPAALPSASPPPRE 1083
Query: 327 V---NKSGQSLTVPESTYTS-IQGDPQRSPSSCNDLYATVKDFEKTPNSTL----PPAGR 378
V + + VPE S + P++ S T E P++ L PPAG
Sbjct: 1084 VPVPTPAPVEVPVPERVAGSPVTPLPEQEASPARPAGPTE---ESPPSAPLRPPEPPAGP 1140
Query: 379 PSEEPEPD 386
P+ P PD
Sbjct: 1141 PAPAPRPD 1148
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 38.5 bits (88), Expect = 0.012
Identities = 48/225 (21%), Positives = 93/225 (41%), Gaps = 12/225 (5%)
Query: 182 ETVKEIKEVAAAAHLEKGHSGKAKSTSASKELPGPQTEGKAEFAEYASVDRNKKCRQSVN 241
E E + V A + ++ S+++ P+ EG+A+ E V+ + V
Sbjct: 1843 EAQPESEGVEAPEAEGDAQEAEGEAQPESEDVEAPEAEGEAQ-PESEDVE-TPEAEWEVQ 1900
Query: 242 VESILGNSCDPEEEAPPPVP-VKLLD-ENENLQEKEGGEA---EESATDTTSETNKRFSS 296
ES + + E+EA P V+ L+ E E+ E EG EA EE+A + +T
Sbjct: 1901 PESEGAEAPEAEKEAQPETESVEALETEGEDEPESEGAEAQEAEEAAQEAEGQTQPESEV 1960
Query: 297 LSYKSREEDPTLTEEEISAMYSSV---NKPGQLVNKSGQSLTVPESTYTSIQGDPQRSPS 353
+ + EE+ E++ A+ V G+ +S + + PE+ + + + P
Sbjct: 1961 IESQEAEEEAQPESEDVEALEVEVETQEAEGEAQPES-EDVEAPEAEGEMQEAEEEAQPE 2019
Query: 354 SCNDLYATVKDFEKTPNSTLPPAGRPSEEPEPDYEAIQTLNREEE 398
S + + A K + + + +P+ + ++ EEE
Sbjct: 2020 S-DGVEAQPKSEGEEAQEVEGETQKTEGDAQPESDGVEAPEAEEE 2063
Score = 31.2 bits (69), Expect = 1.9
Identities = 55/274 (20%), Positives = 106/274 (38%), Gaps = 26/274 (9%)
Query: 90 GDILSEDSTLTCMQHYEEVQTSASDLLDSQDSTGKPKCHQSRELPRIPPESAVDTMLTAR 149
GD+ E+ C + + A + + + S L ++ + + +
Sbjct: 1248 GDL--ENQQQCCFPTFLNARACACATNEDEAERDSEEQRASSNLEQLAENTVQEEVQLEE 1305
Query: 150 SVDGDQGLGMEGPYEVLKDSSSQENMVEDCLY-ETVKEIK------EVAAAAHLEK--GH 200
+ +G +G G++ L+++ ++E + E+ + E KE + E A +E+ G
Sbjct: 1306 TKEGTEGEGLQEEAVQLEETKTEEGLQEEGVQLEETKETEGEGQQEEEAQLEEIEETGGE 1365
Query: 201 SGKAKSTSASKELPGPQTEGKAEFAEYASVDRNKKCRQSVNVESILGNSCDPEEEAPPPV 260
+ + + GP+ + E E + SV+ + + EA P
Sbjct: 1366 GLQEEGVQLEEVKEGPEGGLQGEALEEGLKEEGLPEEGSVHGQEL--------SEASSP- 1416
Query: 261 PVKLLDENENLQEKEGGEAEESATDTTSETNKRFSSLSYKSREEDPTLTEEEI-SAMYSS 319
K E++ +QE+E G A SA +E + + E DP+ +E + S +
Sbjct: 1417 DGKGSQEDDPVQEEEAGRASASAEPCPAEGTEEPTEPPSHLSETDPSASERQSGSQLEPG 1476
Query: 320 VNKPGQLVNKSGQSLTVPESTYTSIQGDPQRSPS 353
+ KP GQ T + T QG +RS S
Sbjct: 1477 LEKPPG-ATMMGQEHTQAQPT----QGAAERSSS 1505
>gi|16332372 cell division cycle 2-like 1 (PITSLRE proteins) isoform
9 [Homo sapiens]
Length = 771
Score = 38.1 bits (87), Expect = 0.016
Identities = 57/272 (20%), Positives = 103/272 (37%), Gaps = 38/272 (13%)
Query: 167 KDSSSQENMVEDCLYETVKEIKEVAAAAH--LEKGHSGKAKSTSASKELPGPQTE----- 219
++ +E E+ E +E + +A H + + +S K K++ S+ P P E
Sbjct: 178 REQKERERRAEERRKE--REARREVSAHHRTMREDYSDKVKASHWSRSPPRPPRERFELG 235
Query: 220 -GK--------------AEFAEYASVDRNKKCRQSVNVESILGNSCDPEEEAPPPVPVKL 264
G+ ++ + + +R +S + ES G+ + EEE
Sbjct: 236 DGRKPVKEEKMEERDLLSDLQDISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGST 295
Query: 265 LDENENLQEKEGGEAEESATDTTSETNKRFSSLSYKSREEDPTLTEEEISAMYSSVNKPG 324
+E+E +E+E E EE+ +++ + + +S + ED EE + + V
Sbjct: 296 SEESEEEEEEEEEEEEETGSNSEEASEQSAEEVSEEEMSED----EERENENHLLVVPES 351
Query: 325 QLVNKSGQSLTVPESTYTSIQGDPQRSPSSCNDLYATVKDFEKTPNSTLPPAGRPSEEPE 384
+ SG+S E +G PQ S + D P P+ +
Sbjct: 352 RFDRDSGESEEAEEEVG---EGTPQSSALTEGDYVPDSPALSPIELKQELPKYLPALQGC 408
Query: 385 PDYEAIQTLNREEEKATLGTNGHHGLVPKEND 416
E Q LNR EE G +G+V + D
Sbjct: 409 RSVEEFQCLNRIEE-------GTYGVVYRAKD 433
>gi|16332370 cell division cycle 2-like 1 (PITSLRE proteins) isoform
8 [Homo sapiens]
Length = 780
Score = 38.1 bits (87), Expect = 0.016
Identities = 57/272 (20%), Positives = 103/272 (37%), Gaps = 38/272 (13%)
Query: 167 KDSSSQENMVEDCLYETVKEIKEVAAAAH--LEKGHSGKAKSTSASKELPGPQTE----- 219
++ +E E+ E +E + +A H + + +S K K++ S+ P P E
Sbjct: 187 REQKERERRAEERRKE--REARREVSAHHRTMREDYSDKVKASHWSRSPPRPPRERFELG 244
Query: 220 -GK--------------AEFAEYASVDRNKKCRQSVNVESILGNSCDPEEEAPPPVPVKL 264
G+ ++ + + +R +S + ES G+ + EEE
Sbjct: 245 DGRKPVKEEKMEERDLLSDLQDISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGST 304
Query: 265 LDENENLQEKEGGEAEESATDTTSETNKRFSSLSYKSREEDPTLTEEEISAMYSSVNKPG 324
+E+E +E+E E EE+ +++ + + +S + ED EE + + V
Sbjct: 305 SEESEEEEEEEEEEEEETGSNSEEASEQSAEEVSEEEMSED----EERENENHLLVVPES 360
Query: 325 QLVNKSGQSLTVPESTYTSIQGDPQRSPSSCNDLYATVKDFEKTPNSTLPPAGRPSEEPE 384
+ SG+S E +G PQ S + D P P+ +
Sbjct: 361 RFDRDSGESEEAEEEVG---EGTPQSSALTEGDYVPDSPALSPIELKQELPKYLPALQGC 417
Query: 385 PDYEAIQTLNREEEKATLGTNGHHGLVPKEND 416
E Q LNR EE G +G+V + D
Sbjct: 418 RSVEEFQCLNRIEE-------GTYGVVYRAKD 442
>gi|16332364 cell division cycle 2-like 1 (PITSLRE proteins) isoform
5 [Homo sapiens]
Length = 748
Score = 38.1 bits (87), Expect = 0.016
Identities = 57/272 (20%), Positives = 103/272 (37%), Gaps = 38/272 (13%)
Query: 167 KDSSSQENMVEDCLYETVKEIKEVAAAAH--LEKGHSGKAKSTSASKELPGPQTE----- 219
++ +E E+ E +E + +A H + + +S K K++ S+ P P E
Sbjct: 155 REQKERERRAEERRKE--REARREVSAHHRTMREDYSDKVKASHWSRSPPRPPRERFELG 212
Query: 220 -GK--------------AEFAEYASVDRNKKCRQSVNVESILGNSCDPEEEAPPPVPVKL 264
G+ ++ + + +R +S + ES G+ + EEE
Sbjct: 213 DGRKPVKEEKMEERDLLSDLQDISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGST 272
Query: 265 LDENENLQEKEGGEAEESATDTTSETNKRFSSLSYKSREEDPTLTEEEISAMYSSVNKPG 324
+E+E +E+E E EE+ +++ + + +S + ED EE + + V
Sbjct: 273 SEESEEEEEEEEEEEEETGSNSEEASEQSAEEVSEEEMSED----EERENENHLLVVPES 328
Query: 325 QLVNKSGQSLTVPESTYTSIQGDPQRSPSSCNDLYATVKDFEKTPNSTLPPAGRPSEEPE 384
+ SG+S E +G PQ S + D P P+ +
Sbjct: 329 RFDRDSGESEEAEEEVG---EGTPQSSALTEGDYVPDSPALSPIELKQELPKYLPALQGC 385
Query: 385 PDYEAIQTLNREEEKATLGTNGHHGLVPKEND 416
E Q LNR EE G +G+V + D
Sbjct: 386 RSVEEFQCLNRIEE-------GTYGVVYRAKD 410
>gi|16332362 cell division cycle 2-like 1 (PITSLRE proteins) isoform
4 [Homo sapiens]
Length = 737
Score = 38.1 bits (87), Expect = 0.016
Identities = 57/272 (20%), Positives = 103/272 (37%), Gaps = 38/272 (13%)
Query: 167 KDSSSQENMVEDCLYETVKEIKEVAAAAH--LEKGHSGKAKSTSASKELPGPQTE----- 219
++ +E E+ E +E + +A H + + +S K K++ S+ P P E
Sbjct: 144 REQKERERRAEERRKE--REARREVSAHHRTMREDYSDKVKASHWSRSPPRPPRERFELG 201
Query: 220 -GK--------------AEFAEYASVDRNKKCRQSVNVESILGNSCDPEEEAPPPVPVKL 264
G+ ++ + + +R +S + ES G+ + EEE
Sbjct: 202 DGRKPVKEEKMEERDLLSDLQDISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGST 261
Query: 265 LDENENLQEKEGGEAEESATDTTSETNKRFSSLSYKSREEDPTLTEEEISAMYSSVNKPG 324
+E+E +E+E E EE+ +++ + + +S + ED EE + + V
Sbjct: 262 SEESEEEEEEEEEEEEETGSNSEEASEQSAEEVSEEEMSED----EERENENHLLVVPES 317
Query: 325 QLVNKSGQSLTVPESTYTSIQGDPQRSPSSCNDLYATVKDFEKTPNSTLPPAGRPSEEPE 384
+ SG+S E +G PQ S + D P P+ +
Sbjct: 318 RFDRDSGESEEAEEEVG---EGTPQSSALTEGDYVPDSPALSPIELKQELPKYLPALQGC 374
Query: 385 PDYEAIQTLNREEEKATLGTNGHHGLVPKEND 416
E Q LNR EE G +G+V + D
Sbjct: 375 RSVEEFQCLNRIEE-------GTYGVVYRAKD 399
>gi|16332358 cell division cycle 2-like 1 (PITSLRE proteins) isoform
2 [Homo sapiens]
Length = 782
Score = 38.1 bits (87), Expect = 0.016
Identities = 57/272 (20%), Positives = 103/272 (37%), Gaps = 38/272 (13%)
Query: 167 KDSSSQENMVEDCLYETVKEIKEVAAAAH--LEKGHSGKAKSTSASKELPGPQTE----- 219
++ +E E+ E +E + +A H + + +S K K++ S+ P P E
Sbjct: 189 REQKERERRAEERRKE--REARREVSAHHRTMREDYSDKVKASHWSRSPPRPPRERFELG 246
Query: 220 -GK--------------AEFAEYASVDRNKKCRQSVNVESILGNSCDPEEEAPPPVPVKL 264
G+ ++ + + +R +S + ES G+ + EEE
Sbjct: 247 DGRKPVKEEKMEERDLLSDLQDISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGST 306
Query: 265 LDENENLQEKEGGEAEESATDTTSETNKRFSSLSYKSREEDPTLTEEEISAMYSSVNKPG 324
+E+E +E+E E EE+ +++ + + +S + ED EE + + V
Sbjct: 307 SEESEEEEEEEEEEEEETGSNSEEASEQSAEEVSEEEMSED----EERENENHLLVVPES 362
Query: 325 QLVNKSGQSLTVPESTYTSIQGDPQRSPSSCNDLYATVKDFEKTPNSTLPPAGRPSEEPE 384
+ SG+S E +G PQ S + D P P+ +
Sbjct: 363 RFDRDSGESEEAEEEVG---EGTPQSSALTEGDYVPDSPALSPIELKQELPKYLPALQGC 419
Query: 385 PDYEAIQTLNREEEKATLGTNGHHGLVPKEND 416
E Q LNR EE G +G+V + D
Sbjct: 420 RSVEEFQCLNRIEE-------GTYGVVYRAKD 444
>gi|148763345 cell division cycle 2-like 2 isoform 4 [Homo sapiens]
Length = 770
Score = 37.4 bits (85), Expect = 0.027
Identities = 60/279 (21%), Positives = 107/279 (38%), Gaps = 52/279 (18%)
Query: 167 KDSSSQENMVEDCLYETVKEIKEVAAAAH--LEKGHSGKAKSTSASKELPGPQTE----- 219
++ +E E+ E +E + +A H + + +S K K++ S+ P P E
Sbjct: 177 REQKERERRAEERRKE--REARREVSAHHRTMREDYSDKVKASHWSRSPPRPPRERFELG 234
Query: 220 -GK--------------AEFAEYASVDRNKKCRQSVNVESILGNSCDPEEEAPPPVPVKL 264
G+ ++ + + +R +S + ES G+ + EEE
Sbjct: 235 DGRKPVKEEKMEERDLLSDLQDISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGST 294
Query: 265 LDENENLQEKEGGEAEESATDTTSETNKRFSSLSYKSREEDPTLTEEEISAMYSSVNKPG 324
+E+E +E+E E EE+ +++ + + +S + ED EE + + V
Sbjct: 295 SEESEEEEEEEEEEEEETGSNSEEASEQSAEEVSEEEMSED----EERENENHLLVVPES 350
Query: 325 QLVNKSGQSLTVPESTYTSIQGDPQRSPSSCNDLYATVKDFEKTPNSTLP-------PAG 377
+ SG+S E +G PQ S T D+ + LP P
Sbjct: 351 RFDRDSGESEEAEEEVG---EGTPQSSA-------LTEGDYVPDSPALLPIELKQELPKY 400
Query: 378 RPSEEPEPDYEAIQTLNREEEKATLGTNGHHGLVPKEND 416
P+ + E Q LNR EE G +G+V + D
Sbjct: 401 LPALQGCRSVEEFQCLNRIEE-------GTYGVVYRAKD 432
>gi|148763347 cell division cycle 2-like 2 isoform 1 [Homo sapiens]
Length = 780
Score = 37.4 bits (85), Expect = 0.027
Identities = 60/279 (21%), Positives = 107/279 (38%), Gaps = 52/279 (18%)
Query: 167 KDSSSQENMVEDCLYETVKEIKEVAAAAH--LEKGHSGKAKSTSASKELPGPQTE----- 219
++ +E E+ E +E + +A H + + +S K K++ S+ P P E
Sbjct: 187 REQKERERRAEERRKE--REARREVSAHHRTMREDYSDKVKASHWSRSPPRPPRERFELG 244
Query: 220 -GK--------------AEFAEYASVDRNKKCRQSVNVESILGNSCDPEEEAPPPVPVKL 264
G+ ++ + + +R +S + ES G+ + EEE
Sbjct: 245 DGRKPVKEEKMEERDLLSDLQDISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGST 304
Query: 265 LDENENLQEKEGGEAEESATDTTSETNKRFSSLSYKSREEDPTLTEEEISAMYSSVNKPG 324
+E+E +E+E E EE+ +++ + + +S + ED EE + + V
Sbjct: 305 SEESEEEEEEEEEEEEETGSNSEEASEQSAEEVSEEEMSED----EERENENHLLVVPES 360
Query: 325 QLVNKSGQSLTVPESTYTSIQGDPQRSPSSCNDLYATVKDFEKTPNSTLP-------PAG 377
+ SG+S E +G PQ S T D+ + LP P
Sbjct: 361 RFDRDSGESEEAEEEVG---EGTPQSSA-------LTEGDYVPDSPALLPIELKQELPKY 410
Query: 378 RPSEEPEPDYEAIQTLNREEEKATLGTNGHHGLVPKEND 416
P+ + E Q LNR EE G +G+V + D
Sbjct: 411 LPALQGCRSVEEFQCLNRIEE-------GTYGVVYRAKD 442
>gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]
Length = 2454
Score = 37.4 bits (85), Expect = 0.027
Identities = 77/379 (20%), Positives = 135/379 (35%), Gaps = 53/379 (13%)
Query: 37 CSSCDREKKPRQHSGDHENLMNVPSDKEMFSRSVTSLATDAPASSEQN-------GALTN 89
C+S D+ K R + NL + + KE+ S S +S DA SSE N +
Sbjct: 1084 CNSSDKRLK-RIELRERRNLSSKRNTKEIQSGSSSS---DAEESSEDNKKKKQRTSSKKK 1139
Query: 90 GDILSEDS-----TLTCMQHYEEVQTSASDLLDS-QDSTGKPKCHQSRELPRIPPESAVD 143
I+ E T T + + +S+SD+ D Q+S G+ + + P + +
Sbjct: 1140 AVIVKEKKRNSLRTSTKRKQADITSSSSSDIEDDDQNSIGEGSSDEQKIKP-VTENLVLS 1198
Query: 144 TMLTARSVDGDQGLGMEGPYEVLKDSSSQE---NMVEDCLYETVK-EIKEVAAAAHLEKG 199
+ GD+ L P V D + + + L E +K + + ++
Sbjct: 1199 SHTGFCQSSGDEALSKSVPVTVDDDDDDNDPENRIAKKMLLEEIKANLSSDEDGSSDDEP 1258
Query: 200 HSGKAKSTSASKELPGPQTEGKAEFAEYASVDRNKKCRQSVNVESILGNSCDPEEEAPPP 259
GK ++ ++E PG +++ + VN ES D EE P
Sbjct: 1259 EEGKKRTGKQNEENPG-----------------DEEAKNQVNSES----DSDSEESKKPR 1297
Query: 260 VPVKLLDENENLQEKEGGEAEESATDTTSETNKRFSSLSYKSREEDPTLTEEEISAMYSS 319
+LL + + E GE +++ E R ED E +S S
Sbjct: 1298 YRHRLLRHKLTVSDGESGEEKKTKPKEHKEVKGRNRRKVSSEDSEDSDFQESGVSEEVSE 1357
Query: 320 VNKPGQLVNKSGQSLTVPESTYTSIQGDPQRSPSSCNDLYATVKDFEKTPNSTLPPAGRP 379
+ +S + + E+ + Q +R +K E + + +
Sbjct: 1358 SEDEQRPRTRSAKKAELEENQRSYKQKKKRR----------RIKVQEDSSSENKSNSEEE 1407
Query: 380 SEEPEPDYEAIQTLNREEE 398
EE E + E + EEE
Sbjct: 1408 EEEKEEEEEEEEEEEEEEE 1426
>gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]
Length = 2492
Score = 37.4 bits (85), Expect = 0.027
Identities = 77/379 (20%), Positives = 135/379 (35%), Gaps = 53/379 (13%)
Query: 37 CSSCDREKKPRQHSGDHENLMNVPSDKEMFSRSVTSLATDAPASSEQN-------GALTN 89
C+S D+ K R + NL + + KE+ S S +S DA SSE N +
Sbjct: 1122 CNSSDKRLK-RIELRERRNLSSKRNTKEIQSGSSSS---DAEESSEDNKKKKQRTSSKKK 1177
Query: 90 GDILSEDS-----TLTCMQHYEEVQTSASDLLDS-QDSTGKPKCHQSRELPRIPPESAVD 143
I+ E T T + + +S+SD+ D Q+S G+ + + P + +
Sbjct: 1178 AVIVKEKKRNSLRTSTKRKQADITSSSSSDIEDDDQNSIGEGSSDEQKIKP-VTENLVLS 1236
Query: 144 TMLTARSVDGDQGLGMEGPYEVLKDSSSQE---NMVEDCLYETVK-EIKEVAAAAHLEKG 199
+ GD+ L P V D + + + L E +K + + ++
Sbjct: 1237 SHTGFCQSSGDEALSKSVPVTVDDDDDDNDPENRIAKKMLLEEIKANLSSDEDGSSDDEP 1296
Query: 200 HSGKAKSTSASKELPGPQTEGKAEFAEYASVDRNKKCRQSVNVESILGNSCDPEEEAPPP 259
GK ++ ++E PG +++ + VN ES D EE P
Sbjct: 1297 EEGKKRTGKQNEENPG-----------------DEEAKNQVNSES----DSDSEESKKPR 1335
Query: 260 VPVKLLDENENLQEKEGGEAEESATDTTSETNKRFSSLSYKSREEDPTLTEEEISAMYSS 319
+LL + + E GE +++ E R ED E +S S
Sbjct: 1336 YRHRLLRHKLTVSDGESGEEKKTKPKEHKEVKGRNRRKVSSEDSEDSDFQESGVSEEVSE 1395
Query: 320 VNKPGQLVNKSGQSLTVPESTYTSIQGDPQRSPSSCNDLYATVKDFEKTPNSTLPPAGRP 379
+ +S + + E+ + Q +R +K E + + +
Sbjct: 1396 SEDEQRPRTRSAKKAELEENQRSYKQKKKRR----------RIKVQEDSSSENKSNSEEE 1445
Query: 380 SEEPEPDYEAIQTLNREEE 398
EE E + E + EEE
Sbjct: 1446 EEEKEEEEEEEEEEEEEEE 1464
>gi|38372901 Sp1 transcription factor isoform a [Homo sapiens]
Length = 785
Score = 37.0 bits (84), Expect = 0.035
Identities = 36/156 (23%), Positives = 63/156 (40%), Gaps = 21/156 (13%)
Query: 33 LIFLCSSCDREKKPRQHSGDHENLMNVPSDKEMFSRS------------VTSLATDAPAS 80
L L ++C R + P ++S + + E+ + ++S + P S
Sbjct: 61 LALLAATCSRIESPNENSNNSQGPSQSGGTGELDLTATQLSQGANGWQIISSSSGATPTS 120
Query: 81 SEQNGALTNGDILSEDSTLTCMQHYEEVQTSASDLLDSQDSTGKPKCHQSRELPRIPPES 140
EQ+G+ TNG SE S + + V +A +L + Q TG LP + P
Sbjct: 121 KEQSGSSTNGSNGSESSKNRTVSGGQYVVAAAPNLQNQQVLTG---------LPGVMPNI 171
Query: 141 AVDTMLTARSVDGDQGLGMEGPYEVLKDSSSQENMV 176
+ ++VDG Q +V +D S Q ++
Sbjct: 172 QYQVIPQFQTVDGQQLQFAATGAQVQQDGSGQIQII 207
>gi|218751903 Sp1 transcription factor isoform b [Homo sapiens]
Length = 778
Score = 37.0 bits (84), Expect = 0.035
Identities = 36/156 (23%), Positives = 63/156 (40%), Gaps = 21/156 (13%)
Query: 33 LIFLCSSCDREKKPRQHSGDHENLMNVPSDKEMFSRS------------VTSLATDAPAS 80
L L ++C R + P ++S + + E+ + ++S + P S
Sbjct: 54 LALLAATCSRIESPNENSNNSQGPSQSGGTGELDLTATQLSQGANGWQIISSSSGATPTS 113
Query: 81 SEQNGALTNGDILSEDSTLTCMQHYEEVQTSASDLLDSQDSTGKPKCHQSRELPRIPPES 140
EQ+G+ TNG SE S + + V +A +L + Q TG LP + P
Sbjct: 114 KEQSGSSTNGSNGSESSKNRTVSGGQYVVAAAPNLQNQQVLTG---------LPGVMPNI 164
Query: 141 AVDTMLTARSVDGDQGLGMEGPYEVLKDSSSQENMV 176
+ ++VDG Q +V +D S Q ++
Sbjct: 165 QYQVIPQFQTVDGQQLQFAATGAQVQQDGSGQIQII 200
>gi|4505129 mutated in colorectal cancers isoform 2 [Homo sapiens]
Length = 829
Score = 37.0 bits (84), Expect = 0.035
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 9/100 (9%)
Query: 264 LLDENENLQEKEGGEAEESATDTTS---ETNKRFSSLSYKSREEDPTLTE--EEISAMYS 318
L+ E+E++QE+ EE T+ S E NK+ L + E+ +E E+S
Sbjct: 63 LMREHEDVQERTTLRYEERITELHSVIAELNKKIDRLQGTTIREEDEYSELRSELSQSQH 122
Query: 319 SVNKPGQLVNKSGQSLTVPESTYTSIQGDPQRSPSSCNDL 358
VN+ + +++ S+++PE+ T + D +C+DL
Sbjct: 123 EVNEDSRSMDQDQTSVSIPENQSTMVTAD----MDNCSDL 158
>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
Length = 1301
Score = 36.6 bits (83), Expect = 0.045
Identities = 57/381 (14%), Positives = 134/381 (35%), Gaps = 7/381 (1%)
Query: 38 SSCDREKKPRQHSGDHENLMNVPSDKEMFSRSVTSLATDAPASSEQNGALTNGDILSEDS 97
SS + +S D+ N + + + S +S ++D+ SS+ + + + D S DS
Sbjct: 917 SSNSSDSSESSNSSDNSNSSDSSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSDS 976
Query: 98 TLTCMQHYEEVQTSASDLLDSQDSTGKPKCHQSRELPRIPPESAVDTMLTARSVDGDQGL 157
+ + + +SD DS DS+ S + ++ D+ ++ S +
Sbjct: 977 SDSSNSSDSSDSSDSSDSSDSSDSSNSSDSSDSSD--SSDSSNSSDSSNSSDSSNSSDSS 1034
Query: 158 GMEGPYEVLKDSSSQENMVEDCLYETVKEIKEVAAAAHLEKGHSGKAKSTSASKELPGPQ 217
+ S S ++ ++ ++ + S + +S S +
Sbjct: 1035 DSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSESSDSSDSSNSS 1094
Query: 218 TEGKAEFAEYASVDRNKKCRQSVNVESILGNSCDPEEEAPPPVPVKLLDENENLQEKEGG 277
+ + +S + + S +S D + + D +++ + +
Sbjct: 1095 DSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSSDSSESSDSS 1154
Query: 278 EAEESATDTTSETNKRFSSLSYKSREEDPTLTEEEISAMYSSVNKPGQLVNKSGQSLTVP 337
++ +S+ + S + S S S D + + + + SS + + S S
Sbjct: 1155 DSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSS 1214
Query: 338 ESTYTSIQGDPQRSPSSCNDLYATVKDFEKTPNSTLPPAGRPSEEPEPDYEAIQTLNREE 397
+S+ +S D S S D + +S+ S + ++ N E
Sbjct: 1215 DSSDSSDSSDSSDSSDSNES-----SDSSDSSDSSDSSNSSDSSDSSDSSDSTSDSNDES 1269
Query: 398 EKATLGTNGHHGLVPKENDYE 418
+ + NG++ ++D E
Sbjct: 1270 DSQSKSGNGNNNGSDSDSDSE 1290
Score = 32.7 bits (73), Expect = 0.66
Identities = 55/313 (17%), Positives = 117/313 (37%), Gaps = 22/313 (7%)
Query: 50 SGDHENLMNVPSDKEMFSRSVTSLATDAPASSEQNGALTNGDILSEDSTLTCMQHYEEVQ 109
S D + + S + + S +S ++D+ SSE + + + D S DS+ + + +
Sbjct: 668 SSDSSDSSDSSSSSDSSNSSDSSDSSDSSNSSESSDSSDSSDSDSSDSSDSSNSNSSDSD 727
Query: 110 TSASDLLDSQDSTGKPKCHQSRELPRIPPES-AVDTMLTARSVDGDQGLGMEGPYEVLKD 168
+S S DS DS+ S + S + D+ ++ S D D
Sbjct: 728 SSNSS--DSSDSSNSSDSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDS----------SD 775
Query: 169 SSSQENMVEDCLYETVKEIKEVAAAAHLEKGHSGKAKSTSASKELPGPQTEGKAEFAEYA 228
SS N + + + + ++ + +S + +S S + + + ++
Sbjct: 776 SSDSSNSSDSNDSSNSSDSSDSSNSS--DSSNSSDSSDSSDSSDSDSSNSSDSSNSSD-- 831
Query: 229 SVDRNKKCRQSVNVESILGNSCDPEEEAPPPVPVKLLDENENLQEKEGGEAEES-----A 283
S D + S + +S G+ D + D +++ + ++ +S +
Sbjct: 832 SSDSSNSSDSSDSSDSSDGSDSDSSNRSDSSNSSDSSDSSDSSNSSDSSDSSDSNESSNS 891
Query: 284 TDTTSETNKRFSSLSYKSREEDPTLTEEEISAMYSSVNKPGQLVNKSGQSLTVPESTYTS 343
+D++ +N S S S D + + + SS + + S S +S+ +S
Sbjct: 892 SDSSDSSNSSDSDSSDSSNSSDSSDSSNSSDSSESSNSSDNSNSSDSSNSSDSSDSSDSS 951
Query: 344 IQGDPQRSPSSCN 356
D S S N
Sbjct: 952 NSSDSSNSSDSSN 964
Score = 32.7 bits (73), Expect = 0.66
Identities = 52/317 (16%), Positives = 110/317 (34%), Gaps = 11/317 (3%)
Query: 38 SSCDREKKPRQHSGDHENLMNVPSDKEMFSRSVTSLATDAPASSEQNGALTNGDILSEDS 97
SS + S D N + S +S ++D+ SS+ + + + D S +S
Sbjct: 764 SSDSSDSSDSSDSSDSSNSSDSNDSSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSDSSNS 823
Query: 98 TLTCMQHYEEVQTSASDLLDSQDSTGKPKCHQSRELPRIPPESAVDTMLTARSVDGDQGL 157
+ + +++SD DS DS+ S + D+ ++ S D
Sbjct: 824 SDSSNSSDSSDSSNSSDSSDSSDSSDGSDSDSSNRSDSSNSSDSSDSSDSSNSSDSSDS- 882
Query: 158 GMEGPYEVLKDSSSQENMVEDCLYETVKEIKEVAAAAHLEKGHSGKAKSTSASKELPGPQ 217
DSS N + ++ ++ + S + S S +
Sbjct: 883 SDSNESSNSSDSSDSSNSSDSDSSDSSNSSDSSDSSNSSDSSESSNSSDNSNSSDSSNSS 942
Query: 218 TEGKAEFAEYASVDRNKKCRQSVNVESILGNSCDPEEEAPPPVPVKLLDENENLQEKEGG 277
+ + +S D + S + +S NS D + + + +++ +
Sbjct: 943 DSSDSSDSSNSS-DSSNSSDSSNSSDSSDSNSSDSSDSS---------NSSDSSDSSDSS 992
Query: 278 EAEESATDTTSETNKRFSSLSYKSREEDPTLTEEEISAMYSSVNKPGQLVNKSGQSLTVP 337
++ +S+ + S + S S S D + + + ++ SS + + S S
Sbjct: 993 DSSDSSDSSNSSDSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSSDSSDSSDSSDSSDSS 1052
Query: 338 ESTYTSIQGDPQRSPSS 354
+S+ +S D S S
Sbjct: 1053 DSSNSSDSSDSSDSSDS 1069
>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
sapiens]
Length = 699
Score = 36.6 bits (83), Expect = 0.045
Identities = 43/225 (19%), Positives = 84/225 (37%), Gaps = 7/225 (3%)
Query: 190 VAAAAHLEKGHSGKAKSTSASKELPGPQTEGKAEFAEYASVDRNKKCRQSVNVESILGNS 249
VA A + S S+ +E+ GP + A A+ + K ++ S +S
Sbjct: 74 VAKKAKKKASSSDSEDSSEEEEEVQGPPAKKAAVPAKRVGLPPGKAAAKASESSSSEESS 133
Query: 250 CDPEEEAPPPVPVKLLDENENLQEKEGGEAEESATDTTSETNKRFSSLSYKSREEDPTLT 309
D +EE PV+ + Q K + A + S+++ SS + + P +T
Sbjct: 134 DDDDEEDQKKQPVQ---KGVKPQAKAAKAPPKKAKSSDSDSDS--SSEDEPPKNQKPKIT 188
Query: 310 EEEISAMYSSVNKPGQLVNK--SGQSLTVPESTYTSIQGDPQRSPSSCNDLYATVKDFEK 367
+ A + KP + K +G++ + S+ +S D + TV +
Sbjct: 189 PVTVKAQTKAPPKPARAAPKIANGKAASSSSSSSSSSSSDDSEEEKAAATPKKTVPKKQV 248
Query: 368 TPNSTLPPAGRPSEEPEPDYEAIQTLNREEEKATLGTNGHHGLVP 412
+ + A P+ + ++ E++K G + VP
Sbjct: 249 VAKAPVKAATTPTRKSSSSEDSSSDEEEEQKKPMKNKPGPYSSVP 293
Score = 35.0 bits (79), Expect = 0.13
Identities = 76/374 (20%), Positives = 136/374 (36%), Gaps = 46/374 (12%)
Query: 59 VPSDKEMFSRSVTSLATDAPASSEQNGALT------NGDILSEDSTLTCMQHYEEVQTSA 112
+ + K S S +S ++ + S E+ A T ++++ + +S
Sbjct: 209 IANGKAASSSSSSSSSSSSDDSEEEKAAATPKKTVPKKQVVAKAPVKAATTPTRKSSSSE 268
Query: 113 SDLLDSQDSTGKPKCHQSRELPRIPPESAVDTMLTARSVDGDQGLGMEGPYEVLKDSSSQ 172
D ++ KP ++ +PP SA + + + + + P E +DSS +
Sbjct: 269 DSSSDEEEEQKKPMKNKPGPYSSVPPPSAPPPKKSLGTQPPKKAVEKQQPVESSEDSSDE 328
Query: 173 ENMVEDCLYETVKEIKEVAAAAHLEKGHSGKAKSTSASKELPGPQTEGKAEFAEYASVDR 232
+ + E K + + K K + S+S +E ++ A +
Sbjct: 329 SDSSSE---EEKKPPTKAVVSKATTKPPPAKKAAESSSDSSDSDSSEDDEAPSKPAGTTK 385
Query: 233 NKKCRQSVNVESILGNSCDPEEEAPPPVPV----KLL----DENENLQEKEGGEAEES-- 282
N S N ++ S + A P PV KLL D + + +E E E++
Sbjct: 386 N-----SSNKPAVTTKSPAVKPAAAPKQPVGGGQKLLTRKADSSSSEEESSSSEEEKTKK 440
Query: 283 --ATDTTSETNKRFSSLSYK----------SREEDPTLTEEEISAMYSSVNKPGQLVNKS 330
AT T K SL K S + + EEE S+V K Q V
Sbjct: 441 MVATTKPKATAKAALSLPAKQAPQGSRDSSSDSDSSSSEEEEEKTSKSAVKKKPQKVAGG 500
Query: 331 GQSLTVPESTYTSIQGDPQRSPSSCNDLYATVKDFEK-----TPNSTLPPAGRPSEEPEP 385
P ++ +G + S SS +D ++ ++ EK +P P A S
Sbjct: 501 ----AAPSKPASAKKGKAESSNSSSSD-DSSEEEEEKLKGKGSPRPQAPKANGTSALTAQ 555
Query: 386 DYEAIQTLNREEEK 399
+ +A + EEE+
Sbjct: 556 NGKAAKNSEEEEEE 569
>gi|16332360 cell division cycle 2-like 1 (PITSLRE proteins) isoform
3 [Homo sapiens]
Length = 526
Score = 36.6 bits (83), Expect = 0.045
Identities = 43/195 (22%), Positives = 75/195 (38%), Gaps = 14/195 (7%)
Query: 222 AEFAEYASVDRNKKCRQSVNVESILGNSCDPEEEAPPPVPVKLLDENENLQEKEGGEAEE 281
++ + + +R +S + ES G+ + EEE +E+E +E+E E EE
Sbjct: 8 SDLQDISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEE 67
Query: 282 SATDTTSETNKRFSSLSYKSREEDPTLTEEEISAMYSSVNKPGQLVNKSGQSLTVPESTY 341
+ +++ + + +S + ED EE + + V + SG+S E
Sbjct: 68 TGSNSEEASEQSAEEVSEEEMSED----EERENENHLLVVPESRFDRDSGESEEAEEEVG 123
Query: 342 TSIQGDPQRSPSSCNDLYATVKDFEKTPNSTLPPAGRPSEEPEPDYEAIQTLNREEEKAT 401
+G PQ S + D P P+ + E Q LNR EE
Sbjct: 124 ---EGTPQSSALTEGDYVPDSPALSPIELKQELPKYLPALQGCRSVEEFQCLNRIEE--- 177
Query: 402 LGTNGHHGLVPKEND 416
G +G+V + D
Sbjct: 178 ----GTYGVVYRAKD 188
>gi|23111062 splicing factor, arginine/serine-rich 8 [Homo sapiens]
Length = 951
Score = 36.2 bits (82), Expect = 0.059
Identities = 60/238 (25%), Positives = 96/238 (40%), Gaps = 46/238 (19%)
Query: 153 GDQGLGMEGPYEVLKDSSSQE--NMVEDCLYETVKEIKEVAAAAHLEKGHSGKAKSTSAS 210
GD + P E DS+ ++ + ED E E+ A SG K S+S
Sbjct: 512 GDSMQAVSAPEEAPTDSAPEKPSDAGEDGAPEDAAEVGARAG--------SGGKKEASSS 563
Query: 211 KELPGPQTEGKAEFAEYASVDRNKKCRQSVNVESILGNSCDPEEEAPPPVPVKLLDENEN 270
K +P +GK A +A + K ++ N P E+ VKL D++++
Sbjct: 564 KTVP----DGKLVKASFAPISFAIKAKE---------NDLLPLEKNR----VKLDDDSDD 606
Query: 271 LQE-KEGGEAEESATDTTSETNKRFSSLSYKSREEDPTLTEEEISAMYSSVNKPGQLVNK 329
+E KEG E+ SA +T N + E+ P LT+EE+ A + +L
Sbjct: 607 DEESKEGQESSSSAANT----NPAVAPPCVVVEEKKPQLTQEELEAKQAKQKLEDRLAAA 662
Query: 330 SGQSL--TVPESTYTSIQGDPQRSPSSCNDLYATVKDFEKTPNSTLP--PAGRPSEEP 383
+ + L ES +Q + +R + F +T + LP AG+ E P
Sbjct: 663 AREKLAQASKESKEKQLQAERKRKAAL----------FLQTLKNPLPEAEAGKIEESP 710
>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 35.8 bits (81), Expect = 0.078
Identities = 48/171 (28%), Positives = 67/171 (39%), Gaps = 13/171 (7%)
Query: 240 VNVESILG---NSCDPEEEAPPPVPVK-LLDENENLQEKEGGEAEESATDTTS--ETNKR 293
V +S+LG N+ AP P K DE + K+ G +ES+ +T KR
Sbjct: 6 VKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKR 65
Query: 294 FS----SLSYKSREEDPTLTEEEISAMYSSVNKPGQLVNKSGQSLTVPESTYTSIQGDPQ 349
S S S +SR + + S SS + ++SG S T S+ +S G P
Sbjct: 66 HSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSP- 124
Query: 350 RSPS-SCNDLYATVKDFEKTPNSTLPPAGRPSEEPEPDYEAIQTLNREEEK 399
SPS +D + K P R S P+P I L R K
Sbjct: 125 -SPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTK 174
>gi|169166499 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 35.8 bits (81), Expect = 0.078
Identities = 48/171 (28%), Positives = 67/171 (39%), Gaps = 13/171 (7%)
Query: 240 VNVESILG---NSCDPEEEAPPPVPVK-LLDENENLQEKEGGEAEESATDTTS--ETNKR 293
V +S+LG N+ AP P K DE + K+ G +ES+ +T KR
Sbjct: 6 VKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKR 65
Query: 294 FS----SLSYKSREEDPTLTEEEISAMYSSVNKPGQLVNKSGQSLTVPESTYTSIQGDPQ 349
S S S +SR + + S SS + ++SG S T S+ +S G P
Sbjct: 66 HSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSP- 124
Query: 350 RSPS-SCNDLYATVKDFEKTPNSTLPPAGRPSEEPEPDYEAIQTLNREEEK 399
SPS +D + K P R S P+P I L R K
Sbjct: 125 -SPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTK 174
>gi|113415498 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 35.8 bits (81), Expect = 0.078
Identities = 48/171 (28%), Positives = 67/171 (39%), Gaps = 13/171 (7%)
Query: 240 VNVESILG---NSCDPEEEAPPPVPVK-LLDENENLQEKEGGEAEESATDTTS--ETNKR 293
V +S+LG N+ AP P K DE + K+ G +ES+ +T KR
Sbjct: 6 VKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKR 65
Query: 294 FS----SLSYKSREEDPTLTEEEISAMYSSVNKPGQLVNKSGQSLTVPESTYTSIQGDPQ 349
S S S +SR + + S SS + ++SG S T S+ +S G P
Sbjct: 66 HSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSP- 124
Query: 350 RSPS-SCNDLYATVKDFEKTPNSTLPPAGRPSEEPEPDYEAIQTLNREEEK 399
SPS +D + K P R S P+P I L R K
Sbjct: 125 -SPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTK 174
>gi|88973230 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 3 [Homo sapiens]
Length = 305
Score = 35.8 bits (81), Expect = 0.078
Identities = 48/171 (28%), Positives = 67/171 (39%), Gaps = 13/171 (7%)
Query: 240 VNVESILG---NSCDPEEEAPPPVPVK-LLDENENLQEKEGGEAEESATDTTS--ETNKR 293
V +S+LG N+ AP P K DE + K+ G +ES+ +T KR
Sbjct: 6 VKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKR 65
Query: 294 FS----SLSYKSREEDPTLTEEEISAMYSSVNKPGQLVNKSGQSLTVPESTYTSIQGDPQ 349
S S S +SR + + S SS + ++SG S T S+ +S G P
Sbjct: 66 HSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSP- 124
Query: 350 RSPS-SCNDLYATVKDFEKTPNSTLPPAGRPSEEPEPDYEAIQTLNREEEK 399
SPS +D + K P R S P+P I L R K
Sbjct: 125 -SPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTK 174
>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
Length = 1020
Score = 35.8 bits (81), Expect = 0.078
Identities = 32/148 (21%), Positives = 59/148 (39%), Gaps = 16/148 (10%)
Query: 164 EVLKDSSSQENMVEDCLYETVKEIKEVAAAAHLEKGHSGKAKSTSASKELPGPQTEGKAE 223
E KDS +E ++ V+E KE A E K + K++P P+ E A+
Sbjct: 854 EEKKDSKKEEAPKKEAPKPKVEEKKEPAVEKPKESKVEAKKEEAEDKKKVPTPEKEAPAK 913
Query: 224 FAEYASVDRNKKCRQSVNVESILGNSCDPEEEAPPPVPVKLLDENENLQEKEGGEAEESA 283
V + K ++ V + +E + P + E ++ +E++ + EE
Sbjct: 914 ----VEVKEDAKPKEKTEVAKKEPDDAKAKEPSKPAEKKEAAPEKKDTKEEKAKKPEEKP 969
Query: 284 TDTTSETNKRFSSLSYKSREEDPTLTEE 311
K++E+D TL++E
Sbjct: 970 KTEA------------KAKEDDKTLSKE 985
>gi|23111036 sorting nexin 1 isoform c [Homo sapiens]
Length = 474
Score = 35.4 bits (80), Expect = 0.10
Identities = 34/152 (22%), Positives = 56/152 (36%), Gaps = 14/152 (9%)
Query: 247 GNSCDPEEEAPPPVPVKLLDENENLQEKEGGEAEESATDTTSETNKRFSSLSYKSREEDP 306
G C E PPP P E E G +E A D+ +E F+ + S+ + P
Sbjct: 5 GGGCSASERLPPPFPGL-----EPESEGAAGGSEPEAGDSDTEGEDIFTGAAVVSKHQSP 59
Query: 307 TLTEEEISAMYSSVNKPGQLVNKSGQSLTVPESTYTSIQGDPQRSPSSCNDLYATVKDFE 366
+T + S K + + Q P+ + + + N K
Sbjct: 60 KITTSLLPINNGS--KENGIHEEQDQE---PQDLFADATVELSLDSTQNNQK----KVLA 110
Query: 367 KTPNSTLPPAGRPSEEPEPDYEAIQTLNREEE 398
KT S P S +P+P YE ++ +E++
Sbjct: 111 KTLISLPPQEATNSSKPQPTYEELEEEEQEDQ 142
>gi|23111034 sorting nexin 1 isoform a [Homo sapiens]
Length = 522
Score = 35.4 bits (80), Expect = 0.10
Identities = 34/152 (22%), Positives = 56/152 (36%), Gaps = 14/152 (9%)
Query: 247 GNSCDPEEEAPPPVPVKLLDENENLQEKEGGEAEESATDTTSETNKRFSSLSYKSREEDP 306
G C E PPP P E E G +E A D+ +E F+ + S+ + P
Sbjct: 5 GGGCSASERLPPPFPGL-----EPESEGAAGGSEPEAGDSDTEGEDIFTGAAVVSKHQSP 59
Query: 307 TLTEEEISAMYSSVNKPGQLVNKSGQSLTVPESTYTSIQGDPQRSPSSCNDLYATVKDFE 366
+T + S K + + Q P+ + + + N K
Sbjct: 60 KITTSLLPINNGS--KENGIHEEQDQE---PQDLFADATVELSLDSTQNNQK----KVLA 110
Query: 367 KTPNSTLPPAGRPSEEPEPDYEAIQTLNREEE 398
KT S P S +P+P YE ++ +E++
Sbjct: 111 KTLISLPPQEATNSSKPQPTYEELEEEEQEDQ 142
>gi|42518068 trans-golgi network protein 2 [Homo sapiens]
Length = 437
Score = 35.4 bits (80), Expect = 0.10
Identities = 38/192 (19%), Positives = 68/192 (35%), Gaps = 12/192 (6%)
Query: 245 ILGNSCDPEEEAPPPVPVKLLDENENLQEKEGGEAEESATDTTSETNKRFSSLSYKSREE 304
+L +EEA + + +L ++ GG + T + + SS ++ E+
Sbjct: 20 LLATESVKQEEAGVRPSAGNVSTHPSLSQRPGGSTKSHPEPQTPKDSPSKSSAEAQTPED 79
Query: 305 DPTLTEEEISAMYSSVNKPGQ-------LVNKSGQSLTVPESTYTSIQGDPQRSPSSCND 357
P + E S NK G +KSG + + + + Q S
Sbjct: 80 TPNKSGAEAKTQKDSSNKSGAEAKTQKGSTSKSGSEAQTTKDSTSKSHPELQTPKDSTGK 139
Query: 358 LYATVKDFEKTPNSTLPPAGRPSEEPEPDYEAIQTLNREEEKATLGTNGHHGLVPKENDY 417
A + E +PN + A + P QT K +G G PK+
Sbjct: 140 SGAEAQTPEDSPNRSGAEAKTQKDSPSKSGSEAQTTKDVPNK-----SGADGQTPKDGSS 194
Query: 418 ESISDLQQGRDI 429
+S ++ Q +D+
Sbjct: 195 KSGAEDQTPKDV 206
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.305 0.124 0.345
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,697,607
Number of Sequences: 37866
Number of extensions: 929902
Number of successful extensions: 3243
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 180
Number of HSP's that attempted gapping in prelim test: 3020
Number of HSP's gapped (non-prelim): 329
length of query: 432
length of database: 18,247,518
effective HSP length: 105
effective length of query: 327
effective length of database: 14,271,588
effective search space: 4666809276
effective search space used: 4666809276
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.