Guide to the Human Genome
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Name: PAG1 Sequence: fasta or formatted (432aa) NCBI GI: 63054864
Description:

phosphoprotein associated with glycosphingolipid microdomains 1

Referenced in:

Non-Receptor Tyrosine Kinase Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         28           4
 C cysteine            1.9          8           1
 D aspartate           6.0         26           1
 E glutamate          11.3         49           3
 F phenylalanine       1.9          8           2
 G glycine             6.5         28           2
 H histidine           1.9          8           2
 I isoleucine          3.0         13           1
 K lysine              5.8         25           2
 L leucine             8.1         35           2
 M methionine          2.1          9           1
 N asparagine          4.2         18           1
 P proline             6.5         28           3
 Q glutamine           4.6         20           2
 R arginine            3.5         15           1
 S serine             12.0         52           3
 T threonine           6.9         30           2
 V valine              4.9         21           1
 W tryptophan          0.2          1           1
 Y tyrosine            2.3         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phosphoprotein associated with glycosphingolipid mic... 
MCC                   0.018   mutated in colorectal cancers isoform 1 
PCLO                  0.017   piccolo isoform 2 
PCLO                  0.017   piccolo isoform 1 
SETD1A                0.017   SET domain containing 1A 
RP1L1                 0.017   retinitis pigmentosa 1-like 1 
CDC2L1                0.016   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.016   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.016   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.016   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.016   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L2                0.014   cell division cycle 2-like 2 isoform 4 
CDC2L2                0.014   cell division cycle 2-like 2 isoform 1 
ATRX                  0.014   transcriptional regulator ATRX isoform 2 
ATRX                  0.014   transcriptional regulator ATRX isoform 1 
SP1                   0.014   Sp1 transcription factor isoform a 
SP1                   0.014   Sp1 transcription factor isoform b 
MCC                   0.014   mutated in colorectal cancers isoform 2 
DSPP                  0.014   dentin sialophosphoprotein preproprotein 
NOLC1                 0.014   nucleolar and coiled-body phosphoprotein 1 
CDC2L1                0.014   cell division cycle 2-like 1 (PITSLRE proteins) isof...
SFRS8                 0.013   splicing factor, arginine/serine-rich 8 
LOC643446             0.013   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.013   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.013   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.013   PREDICTED: similar to ribonucleic acid binding prote...
NEFH                  0.013   neurofilament, heavy polypeptide 200kDa 
SNX1                  0.012   sorting nexin 1 isoform c 
SNX1                  0.012   sorting nexin 1 isoform a 
TGOLN2                0.012   trans-golgi network protein 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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