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Search of human proteins with 62865649
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|62865649 rififylin [Homo sapiens]
(363 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|62865649 rififylin [Homo sapiens] 755 0.0
gi|17432433 rififylin [Homo sapiens] 755 0.0
gi|37595539 ring finger protein 34 isoform 1 [Homo sapiens] 280 1e-75
gi|37595537 ring finger protein 34 isoform 2 [Homo sapiens] 280 1e-75
gi|4502141 baculoviral IAP repeat-containing protein 2 [Homo sap... 60 2e-09
gi|33946285 baculoviral IAP repeat-containing protein 3 [Homo sa... 59 9e-09
gi|4502139 baculoviral IAP repeat-containing protein 3 [Homo sap... 59 9e-09
gi|44680139 baculoviral IAP repeat-containing 8 [Homo sapiens] 58 1e-08
gi|32528299 baculoviral IAP repeat-containing protein 4 [Homo sa... 58 2e-08
gi|217416388 neuralized homolog 1B [Homo sapiens] 55 1e-07
gi|171542821 mitochondrial ubiquitin ligase activator of NFKB 1 ... 55 1e-07
gi|11545910 livin inhibitor of apoptosis isoform beta [Homo sapi... 51 2e-06
gi|21536421 livin inhibitor of apoptosis isoform alpha [Homo sap... 51 2e-06
gi|38788243 myosin regulatory light chain interacting protein [H... 50 4e-06
gi|30348954 mindbomb homolog 1 [Homo sapiens] 49 7e-06
gi|223278368 neuralized-like [Homo sapiens] 48 2e-05
gi|53729363 leucine rich repeat and sterile alpha motif containi... 48 2e-05
gi|53729361 leucine rich repeat and sterile alpha motif containi... 48 2e-05
gi|53729359 leucine rich repeat and sterile alpha motif containi... 48 2e-05
gi|45387949 ring finger and SPRY domain containing 1 [Homo sapiens] 47 3e-05
gi|47716512 mex-3 homolog B [Homo sapiens] 45 8e-05
gi|5729765 cell growth regulator with ring finger domain 1 [Homo... 45 8e-05
gi|21264330 mindbomb homolog 2 [Homo sapiens] 45 1e-04
gi|165905613 ring finger and KH domain containing 1 [Homo sapiens] 44 2e-04
gi|148229134 ring finger and KH domain containing 2 [Homo sapiens] 44 2e-04
gi|147902746 MEX3A protein [Homo sapiens] 44 2e-04
gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens] 43 4e-04
gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens] 43 4e-04
gi|214010238 mahogunin, ring finger 1 isoform 4 [Homo sapiens] 43 5e-04
gi|214010236 mahogunin, ring finger 1 isoform 3 [Homo sapiens] 43 5e-04
>gi|62865649 rififylin [Homo sapiens]
Length = 363
Score = 755 bits (1950), Expect = 0.0
Identities = 363/363 (100%), Positives = 363/363 (100%)
Query: 1 MWATCCNWFCLDGQPEEVPPPQGARMQAYSNPGYSSFPSPTGLEPSCKSCGAHFANTARK 60
MWATCCNWFCLDGQPEEVPPPQGARMQAYSNPGYSSFPSPTGLEPSCKSCGAHFANTARK
Sbjct: 1 MWATCCNWFCLDGQPEEVPPPQGARMQAYSNPGYSSFPSPTGLEPSCKSCGAHFANTARK 60
Query: 61 QTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFRATAFQREELMKMKVKDLRDYLSLHDIST 120
QTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFRATAFQREELMKMKVKDLRDYLSLHDIST
Sbjct: 61 QTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFRATAFQREELMKMKVKDLRDYLSLHDIST 120
Query: 121 EMCREKEELVLLVLGQQPVISQEDRTRASTLSPDFPEQQAFLTQPHSSMVPPTSPNLPSS 180
EMCREKEELVLLVLGQQPVISQEDRTRASTLSPDFPEQQAFLTQPHSSMVPPTSPNLPSS
Sbjct: 121 EMCREKEELVLLVLGQQPVISQEDRTRASTLSPDFPEQQAFLTQPHSSMVPPTSPNLPSS 180
Query: 181 SAQATSVPPAQVQENQQANGHVSQDQEEPVYLESVARVPAEDETQSIDSEDSFVPGRRAS 240
SAQATSVPPAQVQENQQANGHVSQDQEEPVYLESVARVPAEDETQSIDSEDSFVPGRRAS
Sbjct: 181 SAQATSVPPAQVQENQQANGHVSQDQEEPVYLESVARVPAEDETQSIDSEDSFVPGRRAS 240
Query: 241 LSDLTDLEDIEGLTVRQLKEILARNFVNYKGCCEKWELMERVTRLYKDQKGLQHLVSGAE 300
LSDLTDLEDIEGLTVRQLKEILARNFVNYKGCCEKWELMERVTRLYKDQKGLQHLVSGAE
Sbjct: 241 LSDLTDLEDIEGLTVRQLKEILARNFVNYKGCCEKWELMERVTRLYKDQKGLQHLVSGAE 300
Query: 301 DQNGGAVPSGLEENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAVHV 360
DQNGGAVPSGLEENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAVHV
Sbjct: 301 DQNGGAVPSGLEENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAVHV 360
Query: 361 FRS 363
FRS
Sbjct: 361 FRS 363
>gi|17432433 rififylin [Homo sapiens]
Length = 363
Score = 755 bits (1950), Expect = 0.0
Identities = 363/363 (100%), Positives = 363/363 (100%)
Query: 1 MWATCCNWFCLDGQPEEVPPPQGARMQAYSNPGYSSFPSPTGLEPSCKSCGAHFANTARK 60
MWATCCNWFCLDGQPEEVPPPQGARMQAYSNPGYSSFPSPTGLEPSCKSCGAHFANTARK
Sbjct: 1 MWATCCNWFCLDGQPEEVPPPQGARMQAYSNPGYSSFPSPTGLEPSCKSCGAHFANTARK 60
Query: 61 QTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFRATAFQREELMKMKVKDLRDYLSLHDIST 120
QTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFRATAFQREELMKMKVKDLRDYLSLHDIST
Sbjct: 61 QTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFRATAFQREELMKMKVKDLRDYLSLHDIST 120
Query: 121 EMCREKEELVLLVLGQQPVISQEDRTRASTLSPDFPEQQAFLTQPHSSMVPPTSPNLPSS 180
EMCREKEELVLLVLGQQPVISQEDRTRASTLSPDFPEQQAFLTQPHSSMVPPTSPNLPSS
Sbjct: 121 EMCREKEELVLLVLGQQPVISQEDRTRASTLSPDFPEQQAFLTQPHSSMVPPTSPNLPSS 180
Query: 181 SAQATSVPPAQVQENQQANGHVSQDQEEPVYLESVARVPAEDETQSIDSEDSFVPGRRAS 240
SAQATSVPPAQVQENQQANGHVSQDQEEPVYLESVARVPAEDETQSIDSEDSFVPGRRAS
Sbjct: 181 SAQATSVPPAQVQENQQANGHVSQDQEEPVYLESVARVPAEDETQSIDSEDSFVPGRRAS 240
Query: 241 LSDLTDLEDIEGLTVRQLKEILARNFVNYKGCCEKWELMERVTRLYKDQKGLQHLVSGAE 300
LSDLTDLEDIEGLTVRQLKEILARNFVNYKGCCEKWELMERVTRLYKDQKGLQHLVSGAE
Sbjct: 241 LSDLTDLEDIEGLTVRQLKEILARNFVNYKGCCEKWELMERVTRLYKDQKGLQHLVSGAE 300
Query: 301 DQNGGAVPSGLEENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAVHV 360
DQNGGAVPSGLEENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAVHV
Sbjct: 301 DQNGGAVPSGLEENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAVHV 360
Query: 361 FRS 363
FRS
Sbjct: 361 FRS 363
>gi|37595539 ring finger protein 34 isoform 1 [Homo sapiens]
Length = 373
Score = 280 bits (716), Expect = 1e-75
Identities = 167/385 (43%), Positives = 224/385 (58%), Gaps = 42/385 (10%)
Query: 1 MWATCCNWF-------CLDGQPEEVPPPQGARMQAYSNPGYSSFPSPTGLEPS--CKSCG 51
MWA+CC + GQ G + NP +S++P P+ CK+CG
Sbjct: 9 MWASCCGLLNEVMGTGAVRGQQSAFAGATGP-FRFTPNPEFSTYPPAATEGPNIVCKACG 67
Query: 52 AHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFRATAFQREELMKMKVKDLRD 111
F+ +K C DCKK+FC CS N R C C + TAFQR +LM++KVKDLR
Sbjct: 68 LSFSVFRKKHVCCDCKKDFCSVCSVLQEN-LRRCSTCHLLQETAFQRPQLMRLKVKDLRQ 126
Query: 112 YLSLHDISTEMCREKEELVLLVLGQQPVISQEDRTRASTLSPDFPEQQAFLTQPHSSMVP 171
YL L +I + CREKE+LV LVL + S++D S+L+ + +F T+ S
Sbjct: 127 YLILRNIPIDTCREKEDLVDLVLCHHGLGSEDDMD-TSSLNSSRSQTSSFFTRSFFSNY- 184
Query: 172 PTSPNLPSSSAQ---------ATSVPPAQVQENQQANGHVSQDQEEPVYLESVARVPAED 222
T+P+ SS Q + S PAQVQ ++ + + D ++ + AED
Sbjct: 185 -TAPSATMSSFQGELMDGDQTSRSGVPAQVQ-SEITSANTEDDDDDDDEDDDDEEENAED 242
Query: 223 ETQSIDSEDSFVPGRRASLSDLTDLEDIEGLTVRQLKEILARNFVNYKGCCEKWELMERV 282
+ E RASLSDL+ L+D+EG++VRQLKEILARNFVNY GCCEKWEL+E+V
Sbjct: 243 RNPGLSKERV-----RASLSDLSSLDDVEGMSVRQLKEILARNFVNYSGCCEKWELVEKV 297
Query: 283 TRLYKD----QKGLQHLVSGAEDQNGGAVPSGLEENLCKICMDSPIDCVLLECGHMVTCT 338
RLYK+ QK + +++ +++LC+ICMD+ IDCVLLECGHMVTCT
Sbjct: 298 NRLYKENEENQKSYGERLQLQDEE---------DDSLCRICMDAVIDCVLLECGHMVTCT 348
Query: 339 KCGKRMNECPICRQYVIRAVHVFRS 363
KCGKRM+ECPICRQYV+RAVHVF+S
Sbjct: 349 KCGKRMSECPICRQYVVRAVHVFKS 373
>gi|37595537 ring finger protein 34 isoform 2 [Homo sapiens]
Length = 372
Score = 280 bits (716), Expect = 1e-75
Identities = 167/385 (43%), Positives = 224/385 (58%), Gaps = 42/385 (10%)
Query: 1 MWATCCNWF-------CLDGQPEEVPPPQGARMQAYSNPGYSSFPSPTGLEPS--CKSCG 51
MWA+CC + GQ G + NP +S++P P+ CK+CG
Sbjct: 8 MWASCCGLLNEVMGTGAVRGQQSAFAGATGP-FRFTPNPEFSTYPPAATEGPNIVCKACG 66
Query: 52 AHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFRATAFQREELMKMKVKDLRD 111
F+ +K C DCKK+FC CS N R C C + TAFQR +LM++KVKDLR
Sbjct: 67 LSFSVFRKKHVCCDCKKDFCSVCSVLQEN-LRRCSTCHLLQETAFQRPQLMRLKVKDLRQ 125
Query: 112 YLSLHDISTEMCREKEELVLLVLGQQPVISQEDRTRASTLSPDFPEQQAFLTQPHSSMVP 171
YL L +I + CREKE+LV LVL + S++D S+L+ + +F T+ S
Sbjct: 126 YLILRNIPIDTCREKEDLVDLVLCHHGLGSEDDMD-TSSLNSSRSQTSSFFTRSFFSNY- 183
Query: 172 PTSPNLPSSSAQ---------ATSVPPAQVQENQQANGHVSQDQEEPVYLESVARVPAED 222
T+P+ SS Q + S PAQVQ ++ + + D ++ + AED
Sbjct: 184 -TAPSATMSSFQGELMDGDQTSRSGVPAQVQ-SEITSANTEDDDDDDDEDDDDEEENAED 241
Query: 223 ETQSIDSEDSFVPGRRASLSDLTDLEDIEGLTVRQLKEILARNFVNYKGCCEKWELMERV 282
+ E RASLSDL+ L+D+EG++VRQLKEILARNFVNY GCCEKWEL+E+V
Sbjct: 242 RNPGLSKERV-----RASLSDLSSLDDVEGMSVRQLKEILARNFVNYSGCCEKWELVEKV 296
Query: 283 TRLYKD----QKGLQHLVSGAEDQNGGAVPSGLEENLCKICMDSPIDCVLLECGHMVTCT 338
RLYK+ QK + +++ +++LC+ICMD+ IDCVLLECGHMVTCT
Sbjct: 297 NRLYKENEENQKSYGERLQLQDEE---------DDSLCRICMDAVIDCVLLECGHMVTCT 347
Query: 339 KCGKRMNECPICRQYVIRAVHVFRS 363
KCGKRM+ECPICRQYV+RAVHVF+S
Sbjct: 348 KCGKRMSECPICRQYVVRAVHVFKS 372
>gi|4502141 baculoviral IAP repeat-containing protein 2 [Homo
sapiens]
Length = 618
Score = 60.5 bits (145), Expect = 2e-09
Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 14/102 (13%)
Query: 269 YKGCCEKWELMERVTRLYKD---QKGLQHLVSGAEDQNGGAVPSGL----EENLCKICMD 321
+K C L E + LYK+ K ++++ + ED +G ++ L EE CK+CMD
Sbjct: 524 FKNC-----LKEIDSTLYKNLFVDKNMKYIPT--EDVSGLSLEEQLRRLQEERTCKVCMD 576
Query: 322 SPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAVHVFRS 363
+ V + CGH+V C +C + +CPICR + V F S
Sbjct: 577 KEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTFLS 618
>gi|33946285 baculoviral IAP repeat-containing protein 3 [Homo
sapiens]
Length = 604
Score = 58.5 bits (140), Expect = 9e-09
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 312 EENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAVHVFRS 363
EE CK+CMD + V + CGH+V C C + +CPICR + V F S
Sbjct: 553 EERTCKVCMDKEVSIVFIPCGHLVVCKDCAPSLRKCPICRSTIKGTVRTFLS 604
>gi|4502139 baculoviral IAP repeat-containing protein 3 [Homo
sapiens]
Length = 604
Score = 58.5 bits (140), Expect = 9e-09
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 312 EENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAVHVFRS 363
EE CK+CMD + V + CGH+V C C + +CPICR + V F S
Sbjct: 553 EERTCKVCMDKEVSIVFIPCGHLVVCKDCAPSLRKCPICRSTIKGTVRTFLS 604
>gi|44680139 baculoviral IAP repeat-containing 8 [Homo sapiens]
Length = 236
Score = 58.2 bits (139), Expect = 1e-08
Identities = 24/52 (46%), Positives = 32/52 (61%)
Query: 312 EENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAVHVFRS 363
EE LCKICMD I V + CGH+VTC +C + ++ CP+C + VF S
Sbjct: 185 EEKLCKICMDRHIAVVFIPCGHLVTCKQCAEAVDRCPMCSAVIDFKQRVFMS 236
>gi|32528299 baculoviral IAP repeat-containing protein 4 [Homo
sapiens]
Length = 497
Score = 57.8 bits (138), Expect = 2e-08
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 312 EENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAVHVFRS 363
EE LCKICMD I V + CGH+VTC +C + +++CP+C + +F S
Sbjct: 446 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFMS 497
>gi|217416388 neuralized homolog 1B [Homo sapiens]
Length = 555
Score = 55.1 bits (131), Expect = 1e-07
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 308 PSGLEENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNE-----CPICRQYVIRAVHVFR 362
P+G++ C +C D +D V+ CGHM C CG R+ CPICR+ + + ++R
Sbjct: 495 PAGIKNGECTVCFDGEVDTVIYTCGHMCLCHSCGLRLKRQARACCPICRRPIKDVIKIYR 554
>gi|171542821 mitochondrial ubiquitin ligase activator of NFKB 1
[Homo sapiens]
Length = 352
Score = 55.1 bits (131), Expect = 1e-07
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 313 ENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNE---CPICRQYVIRAVHVFRS 363
++ C +C+ S CV LECGH+ +CT+C + + E CPICRQ + R + ++ S
Sbjct: 299 KSACVVCLSSFKSCVFLECGHVCSCTECYRALPEPKKCPICRQAITRVIPLYNS 352
>gi|11545910 livin inhibitor of apoptosis isoform beta [Homo
sapiens]
Length = 280
Score = 50.8 bits (120), Expect = 2e-06
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 312 EENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAVHVFRS 363
EE CK+C+D + V + CGH+V C +C + CPICR V V F S
Sbjct: 230 EERTCKVCLDRAVSIVFVPCGHLV-CAECAPGLQLCPICRAPVRSRVRTFLS 280
>gi|21536421 livin inhibitor of apoptosis isoform alpha [Homo
sapiens]
Length = 298
Score = 50.8 bits (120), Expect = 2e-06
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 312 EENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAVHVFRS 363
EE CK+C+D + V + CGH+V C +C + CPICR V V F S
Sbjct: 248 EERTCKVCLDRAVSIVFVPCGHLV-CAECAPGLQLCPICRAPVRSRVRTFLS 298
>gi|38788243 myosin regulatory light chain interacting protein [Homo
sapiens]
Length = 445
Score = 49.7 bits (117), Expect = 4e-06
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 312 EENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAVHVF 361
E LC +C + I+ CGH V C C ++ CP+CR V HV+
Sbjct: 383 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVY 432
>gi|30348954 mindbomb homolog 1 [Homo sapiens]
Length = 1006
Score = 48.9 bits (115), Expect = 7e-06
Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 312 EENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAVHVF 361
E+ +C +C+D + + L CGH TC CG RM+ECPICR+ + R + ++
Sbjct: 959 EQTMCPVCLDRLKNMIFL-CGHG-TCQLCGDRMSECPICRKAIERRILLY 1006
Score = 44.3 bits (103), Expect = 2e-04
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 273 CEKWELMERVTRLYKDQKGLQHLVSGAEDQNGGAVPSGLEENL--CKICMDSPIDCVLLE 330
C L + + + +K++ VSG ++ S E L C +C D D +
Sbjct: 780 CPDPNLCKALAKCHKEK------VSGQVGSRSPSMISNDSETLEECMVCSDMKRDTLFGP 833
Query: 331 CGHMVTCTKCGKRMNECPICRQYV 354
CGH+ TC+ C R+ +C IC++ V
Sbjct: 834 CGHIATCSLCSPRVKKCLICKEQV 857
Score = 39.3 bits (90), Expect = 0.006
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 316 CKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAV 358
C +C D + CGHM C C M +C CR V R V
Sbjct: 866 CVVCSDKKAAVLFQPCGHMCACENCANLMKKCVQCRAVVERRV 908
>gi|223278368 neuralized-like [Homo sapiens]
Length = 574
Score = 47.8 bits (112), Expect = 2e-05
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 316 CKICMDSPIDCVLLECGHMVTCTKCGKRMNE-----CPICRQYVIRAVHVFRS 363
C IC + +D V+ CGHM C CG R+ + CPICR+ + + +RS
Sbjct: 521 CTICYEHAVDTVIYTCGHMCLCYACGLRLKKALHACCPICRRPIKDIIKTYRS 573
>gi|53729363 leucine rich repeat and sterile alpha motif containing
1 [Homo sapiens]
Length = 723
Score = 47.8 bits (112), Expect = 2e-05
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 300 EDQNGGAVPSGLEENL--CKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRA 357
E A P+ LE C +C++ + L CGH+ C +C + + CP+CRQ + +
Sbjct: 657 ESVRPSAPPAELEVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPLRTCPLCRQDIAQR 716
Query: 358 VHVFRS 363
+ ++ S
Sbjct: 717 LRIYHS 722
>gi|53729361 leucine rich repeat and sterile alpha motif containing
1 [Homo sapiens]
Length = 723
Score = 47.8 bits (112), Expect = 2e-05
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 300 EDQNGGAVPSGLEENL--CKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRA 357
E A P+ LE C +C++ + L CGH+ C +C + + CP+CRQ + +
Sbjct: 657 ESVRPSAPPAELEVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPLRTCPLCRQDIAQR 716
Query: 358 VHVFRS 363
+ ++ S
Sbjct: 717 LRIYHS 722
>gi|53729359 leucine rich repeat and sterile alpha motif containing
1 [Homo sapiens]
Length = 723
Score = 47.8 bits (112), Expect = 2e-05
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 300 EDQNGGAVPSGLEENL--CKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRA 357
E A P+ LE C +C++ + L CGH+ C +C + + CP+CRQ + +
Sbjct: 657 ESVRPSAPPAELEVQASECVVCLEREAQMIFLNCGHVCCCQQCCQPLRTCPLCRQDIAQR 716
Query: 358 VHVFRS 363
+ ++ S
Sbjct: 717 LRIYHS 722
>gi|45387949 ring finger and SPRY domain containing 1 [Homo sapiens]
Length = 576
Score = 47.0 bits (110), Expect = 3e-05
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 311 LEENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAV 358
+ EN C +C D D L CGH C C ++ CP+CR+ ++ +
Sbjct: 522 IRENCCSLCCDEVADTQLKPCGHSDLCMDCALQLETCPLCRKEIVSRI 569
>gi|47716512 mex-3 homolog B [Homo sapiens]
Length = 569
Score = 45.4 bits (106), Expect = 8e-05
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 316 CKICMDSPIDCVLLECGHMVTCTKCGKRM-----NECPICRQYVIRAVHVF 361
C +C +S + L+ CGH + C +C R+ ECP+C V +A+ +F
Sbjct: 518 CSVCFESEVIAALVPCGHNLFCMECANRICEKSEPECPVCHTAVTQAIRIF 568
>gi|5729765 cell growth regulator with ring finger domain 1 [Homo
sapiens]
Length = 332
Score = 45.4 bits (106), Expect = 8e-05
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 308 PSGLEENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYV 354
PS C +C + ++ VLL C H C C K +CP+CRQ+V
Sbjct: 266 PSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFV 312
>gi|21264330 mindbomb homolog 2 [Homo sapiens]
Length = 1013
Score = 44.7 bits (104), Expect = 1e-04
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 311 LEENL-CKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYVIRAVHVF 361
+EE + C IC+DS I V +CGH C CG ++ CPICRQ + + +F
Sbjct: 963 MEERITCPICIDSHIRLVF-QCGHGA-CAPCGSALSACPICRQPIRDRIQIF 1012
Score = 34.7 bits (78), Expect = 0.14
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 305 GAVPSGLEENLCKICMDSPIDCVLLECGHMVTCTKCGKRMNECPICRQYV 354
GA P G E C +C + + + C H C +C +RM +C C+ V
Sbjct: 880 GAAP-GPEAAECLVCSELALLVLFSPCQHRTVCEECARRMKKCIRCQVVV 928
>gi|165905613 ring finger and KH domain containing 1 [Homo sapiens]
Length = 651
Score = 44.3 bits (103), Expect = 2e-04
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 316 CKICMDSPIDCVLLECGHMVTCTKC-----GKRMNECPICRQYVIRAVHVF 361
C +C + + L+ CGH + C C GK ECP CR +A+H+F
Sbjct: 600 CVVCAEGEVMAALVPCGHNLFCMDCAVRICGKSEPECPACRTPATQAIHIF 650
>gi|148229134 ring finger and KH domain containing 2 [Homo sapiens]
Length = 659
Score = 43.9 bits (102), Expect = 2e-04
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 303 NGGAVPSGLEENL----CKICMDSPIDCVLLECGHMVTCTKCG-----KRMNECPICRQY 353
NGG+ S E+ C IC ++ + L+ CGH + C +C KR CP+C+
Sbjct: 591 NGGSTSSSPPESRRKHDCVICFENEVIAALVPCGHNLFCMECANKICEKRTPSCPVCQTA 650
Query: 354 VIRAVHV 360
V +A+ +
Sbjct: 651 VTQAIQI 657
>gi|147902746 MEX3A protein [Homo sapiens]
Length = 520
Score = 43.9 bits (102), Expect = 2e-04
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 296 VSGAEDQNGGAVPSGLEENLCKICMDSPIDCVLLECGHMVTCTKCGKRM-----NECPIC 350
+ G GG + S C +C +S + L+ CGH + C +C R+ ECP+C
Sbjct: 449 LQGFSKLGGGGLRSPGGGRDCMVCFESEVTAALVPCGHNLFCMECAVRICERTDPECPVC 508
Query: 351 RQYVIRAVHVF 361
+A+ +F
Sbjct: 509 HITATQAIRIF 519
>gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens]
Length = 788
Score = 43.1 bits (100), Expect = 4e-04
Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 21/155 (13%)
Query: 89 QRFRATAFQREELMKMKVKDLRDYLSLHDISTEMCREKEE----LVLLVLGQQPVISQED 144
Q+F+A Q+++L + + + + + LH + + +++++ + L L QQ Q+
Sbjct: 198 QQFQAVVQQQQQLQQQQQQQ-QHLIKLHHQNQQQIQQQQQQLQRIAQLQLQQQQQQQQQQ 256
Query: 145 RTRASTLSPDFPEQQAFLTQPHSSMVPPTSPNLPSSSAQATSVPPAQVQENQQANGHVS- 203
+ + +QQA QP P P P S A P Q+Q+ H
Sbjct: 257 QQQ---------QQQALQAQPPIQQPPMQQPQPPPSQAL-----PQQLQQMHHTQHHQPP 302
Query: 204 -QDQEEPVYLESVARVPAEDETQSIDSEDSFVPGR 237
Q Q+ PV +++P + +TQ + S+ +PG+
Sbjct: 303 PQPQQPPVAQNQPSQLPPQSQTQPLVSQAQALPGQ 337
>gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]
Length = 748
Score = 43.1 bits (100), Expect = 4e-04
Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 21/155 (13%)
Query: 89 QRFRATAFQREELMKMKVKDLRDYLSLHDISTEMCREKEE----LVLLVLGQQPVISQED 144
Q+F+A Q+++L + + + + + LH + + +++++ + L L QQ Q+
Sbjct: 198 QQFQAVVQQQQQLQQQQQQQ-QHLIKLHHQNQQQIQQQQQQLQRIAQLQLQQQQQQQQQQ 256
Query: 145 RTRASTLSPDFPEQQAFLTQPHSSMVPPTSPNLPSSSAQATSVPPAQVQENQQANGHVS- 203
+ + +QQA QP P P P S A P Q+Q+ H
Sbjct: 257 QQQ---------QQQALQAQPPIQQPPMQQPQPPPSQAL-----PQQLQQMHHTQHHQPP 302
Query: 204 -QDQEEPVYLESVARVPAEDETQSIDSEDSFVPGR 237
Q Q+ PV +++P + +TQ + S+ +PG+
Sbjct: 303 PQPQQPPVAQNQPSQLPPQSQTQPLVSQAQALPGQ 337
>gi|214010238 mahogunin, ring finger 1 isoform 4 [Homo sapiens]
Length = 531
Score = 42.7 bits (99), Expect = 5e-04
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 14/83 (16%)
Query: 277 ELMERVTRLYKDQKGLQHL----VSGAEDQNGGAVPSGLEENLCKICMDSPIDCVLLECG 332
++++RV+ L ++ G+++ ++D+N N C +C+ D ++L C
Sbjct: 242 QIVDRVSYLLQEIYGIENKNNQETKPSDDENSD------NSNECVVCLSDLRDTLILPCR 295
Query: 333 HMVTCTKCGKRM----NECPICR 351
H+ CT C + N CPICR
Sbjct: 296 HLCLCTSCADTLRYQANNCPICR 318
>gi|214010236 mahogunin, ring finger 1 isoform 3 [Homo sapiens]
Length = 552
Score = 42.7 bits (99), Expect = 5e-04
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 14/83 (16%)
Query: 277 ELMERVTRLYKDQKGLQHL----VSGAEDQNGGAVPSGLEENLCKICMDSPIDCVLLECG 332
++++RV+ L ++ G+++ ++D+N N C +C+ D ++L C
Sbjct: 241 QIVDRVSYLLQEIYGIENKNNQETKPSDDENSD------NSNECVVCLSDLRDTLILPCR 294
Query: 333 HMVTCTKCGKRM----NECPICR 351
H+ CT C + N CPICR
Sbjct: 295 HLCLCTSCADTLRYQANNCPICR 317
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.132 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,355,484
Number of Sequences: 37866
Number of extensions: 826488
Number of successful extensions: 4797
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 198
Number of HSP's that attempted gapping in prelim test: 4496
Number of HSP's gapped (non-prelim): 458
length of query: 363
length of database: 18,247,518
effective HSP length: 104
effective length of query: 259
effective length of database: 14,309,454
effective search space: 3706148586
effective search space used: 3706148586
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.