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Search of human proteins with 62865625
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|62865625 TSC22 domain family, member 3 isoform 3 [Homo
sapiens]
(77 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|62865625 TSC22 domain family, member 3 isoform 3 [Homo sapiens] 153 3e-38
gi|37622903 TSC22 domain family, member 3 isoform 1 [Homo sapiens] 153 3e-38
gi|37622901 TSC22 domain family, member 3 isoform 2 [Homo sapiens] 153 3e-38
gi|171460948 TSC22 domain family, member 1 isoform 1 [Homo sapiens] 97 4e-21
gi|5174729 TSC22 domain family, member 1 isoform 2 [Homo sapiens] 97 4e-21
gi|13569901 TSC22 domain family, member 4 [Homo sapiens] 86 8e-18
gi|7662236 TSC22 domain family, member 2 [Homo sapiens] 81 2e-16
gi|33946313 ninein isoform 4 [Homo sapiens] 35 0.013
gi|33946321 ninein isoform 5 [Homo sapiens] 35 0.013
gi|148536871 ninein isoform 1 [Homo sapiens] 35 0.013
gi|148536869 ninein isoform 2 [Homo sapiens] 35 0.013
gi|38570109 CAP-binding protein complex interacting protein 1 is... 34 0.022
gi|38570107 CAP-binding protein complex interacting protein 1 is... 34 0.022
gi|9966805 DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [Homo sapiens] 33 0.065
gi|55769533 PRKC, apoptosis, WT1, regulator [Homo sapiens] 31 0.25
gi|57242777 c-myc binding protein [Homo sapiens] 31 0.25
gi|120431745 huntingtin-associated protein 1 isoform 4 [Homo sap... 31 0.25
gi|120431743 huntingtin-associated protein 1 isoform 3 [Homo sap... 31 0.25
gi|120431738 huntingtin-associated protein 1 isoform 2 [Homo sap... 31 0.25
gi|31563330 A-kinase anchor protein 13 isoform 1 [Homo sapiens] 31 0.25
gi|21493031 A-kinase anchor protein 13 isoform 3 [Homo sapiens] 31 0.25
gi|21493029 A-kinase anchor protein 13 isoform 2 [Homo sapiens] 31 0.25
gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo sa... 30 0.32
gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo s... 30 0.32
gi|60498973 myelin transcription factor 1-like [Homo sapiens] 30 0.32
gi|94681063 bromodomain adjacent to zinc finger domain, 2B [Homo... 30 0.32
gi|57863263 testis expressed sequence 14 isoform a [Homo sapiens] 30 0.32
gi|57863261 testis expressed sequence 14 isoform b [Homo sapiens] 30 0.32
gi|242117953 SH3 domain-containing protein C1orf113 isoform 1 [H... 30 0.55
gi|242117948 SH3 domain-containing protein C1orf113 isoform 2 [H... 30 0.55
>gi|62865625 TSC22 domain family, member 3 isoform 3 [Homo
sapiens]
Length = 77
Score = 153 bits (386), Expect = 3e-38
Identities = 77/77 (100%), Positives = 77/77 (100%)
Query: 1 MDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEE 60
MDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEE
Sbjct: 1 MDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEE 60
Query: 61 PAPESPQVPEAPGGSAV 77
PAPESPQVPEAPGGSAV
Sbjct: 61 PAPESPQVPEAPGGSAV 77
>gi|37622903 TSC22 domain family, member 3 isoform 1 [Homo sapiens]
Length = 200
Score = 153 bits (386), Expect = 3e-38
Identities = 77/77 (100%), Positives = 77/77 (100%)
Query: 1 MDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEE 60
MDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEE
Sbjct: 124 MDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEE 183
Query: 61 PAPESPQVPEAPGGSAV 77
PAPESPQVPEAPGGSAV
Sbjct: 184 PAPESPQVPEAPGGSAV 200
>gi|37622901 TSC22 domain family, member 3 isoform 2 [Homo sapiens]
Length = 134
Score = 153 bits (386), Expect = 3e-38
Identities = 77/77 (100%), Positives = 77/77 (100%)
Query: 1 MDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEE 60
MDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEE
Sbjct: 58 MDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEE 117
Query: 61 PAPESPQVPEAPGGSAV 77
PAPESPQVPEAPGGSAV
Sbjct: 118 PAPESPQVPEAPGGSAV 134
>gi|171460948 TSC22 domain family, member 1 isoform 1 [Homo sapiens]
Length = 1073
Score = 96.7 bits (239), Expect = 4e-21
Identities = 51/73 (69%), Positives = 59/73 (80%), Gaps = 1/73 (1%)
Query: 1 MDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCL-SPE 59
MDLVK+HLMYAVREEVE+LKEQI+EL+EKNSQLE+EN LLKTLASPEQL +FQ+ L +
Sbjct: 988 MDLVKSHLMYAVREEVEVLKEQIKELIEKNSQLEQENNLLKTLASPEQLAQFQAQLQTGS 1047
Query: 60 EPAPESPQVPEAP 72
PA PQ P
Sbjct: 1048 PPATTQPQGTTQP 1060
>gi|5174729 TSC22 domain family, member 1 isoform 2 [Homo sapiens]
Length = 144
Score = 96.7 bits (239), Expect = 4e-21
Identities = 51/73 (69%), Positives = 59/73 (80%), Gaps = 1/73 (1%)
Query: 1 MDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCL-SPE 59
MDLVK+HLMYAVREEVE+LKEQI+EL+EKNSQLE+EN LLKTLASPEQL +FQ+ L +
Sbjct: 59 MDLVKSHLMYAVREEVEVLKEQIKELIEKNSQLEQENNLLKTLASPEQLAQFQAQLQTGS 118
Query: 60 EPAPESPQVPEAP 72
PA PQ P
Sbjct: 119 PPATTQPQGTTQP 131
>gi|13569901 TSC22 domain family, member 4 [Homo sapiens]
Length = 395
Score = 85.5 bits (210), Expect = 8e-18
Identities = 45/70 (64%), Positives = 53/70 (75%), Gaps = 2/70 (2%)
Query: 1 MDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPE- 59
MDLVK+HLM+AVREEVE+LKEQIREL E+N+ LE+EN LL+ LASPEQL + S P
Sbjct: 326 MDLVKSHLMFAVREEVEVLKEQIRELAERNAALEQENGLLRALASPEQLAQLPSSGVPRL 385
Query: 60 -EPAPESPQV 68
PAP P V
Sbjct: 386 GPPAPNGPSV 395
>gi|7662236 TSC22 domain family, member 2 [Homo sapiens]
Length = 780
Score = 81.3 bits (199), Expect = 2e-16
Identities = 46/88 (52%), Positives = 58/88 (65%), Gaps = 14/88 (15%)
Query: 1 MDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKF-------- 52
MDLVK+HLMYAVREEVE+LKEQI+ELVE+NS LEREN LLK+L+S +QL +
Sbjct: 694 MDLVKSHLMYAVREEVEVLKEQIKELVERNSLLERENALLKSLSSNDQLSQLPTQQANPG 753
Query: 53 ----QSCLSPEEPAPESPQVPEAPGGSA 76
Q + + P P P P+ P S+
Sbjct: 754 STSQQQAVIAQPPQPTQP--PQQPNVSS 779
>gi|33946313 ninein isoform 4 [Homo sapiens]
Length = 2096
Score = 35.0 bits (79), Expect = 0.013
Identities = 23/43 (53%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 11 AVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQ 53
AV++ VE LK+QI EL KN QL+ ENT L S Q EK Q
Sbjct: 1573 AVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQ-EKLQ 1614
>gi|33946321 ninein isoform 5 [Homo sapiens]
Length = 2090
Score = 35.0 bits (79), Expect = 0.013
Identities = 23/43 (53%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 11 AVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQ 53
AV++ VE LK+QI EL KN QL+ ENT L S Q EK Q
Sbjct: 1567 AVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQ-EKLQ 1608
>gi|148536871 ninein isoform 1 [Homo sapiens]
Length = 2046
Score = 35.0 bits (79), Expect = 0.013
Identities = 23/43 (53%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 11 AVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQ 53
AV++ VE LK+QI EL KN QL+ ENT L S Q EK Q
Sbjct: 1567 AVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQ-EKLQ 1608
>gi|148536869 ninein isoform 2 [Homo sapiens]
Length = 2133
Score = 35.0 bits (79), Expect = 0.013
Identities = 23/43 (53%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 11 AVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQ 53
AV++ VE LK+QI EL KN QL+ ENT L S Q EK Q
Sbjct: 1567 AVQKMVENLKKQISELKIKNQQLDLENTELSQKNSQNQ-EKLQ 1608
>gi|38570109 CAP-binding protein complex interacting protein 1
isoform b [Homo sapiens]
Length = 1349
Score = 34.3 bits (77), Expect = 0.022
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 14 EEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEEPA 62
E ++ ++Q +L E+ E + TL K + + E +EKF+ C+ ++PA
Sbjct: 438 EHLQKDEQQQPDLSERTKLTEDKTTLTKKMTTEEVIEKFKKCIQQQDPA 486
>gi|38570107 CAP-binding protein complex interacting protein 1
isoform a [Homo sapiens]
Length = 1501
Score = 34.3 bits (77), Expect = 0.022
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 14 EEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEEPA 62
E ++ ++Q +L E+ E + TL K + + E +EKF+ C+ ++PA
Sbjct: 590 EHLQKDEQQQPDLSERTKLTEDKTTLTKKMTTEEVIEKFKKCIQQQDPA 638
>gi|9966805 DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [Homo sapiens]
Length = 859
Score = 32.7 bits (73), Expect = 0.065
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 17/72 (23%)
Query: 13 REEVEILKEQIRELVEKNSQLERENTLLKT--------LASPEQLEKFQSCLS------- 57
++++++LK+++R L+ + E + T T +++P + E SCLS
Sbjct: 782 QKQMKVLKKELRHLLSQPLFTESQKTKYPTQSGKPPLLVSAPSKSESALSCLSKQKKKKT 841
Query: 58 --PEEPAPESPQ 67
P+EP PE PQ
Sbjct: 842 KKPKEPQPEQPQ 853
>gi|55769533 PRKC, apoptosis, WT1, regulator [Homo sapiens]
Length = 340
Score = 30.8 bits (68), Expect = 0.25
Identities = 13/40 (32%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 5 KNHLMYAVREEVEILKEQIRELVEKNSQLEREN-TLLKTL 43
K ++ ++EE+++L + ++ ++N QL++EN TLLK +
Sbjct: 296 KEEMIGKLKEEIDLLNRDLDDIEDENEQLKQENKTLLKVV 335
>gi|57242777 c-myc binding protein [Homo sapiens]
Length = 103
Score = 30.8 bits (68), Expect = 0.25
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 1 MDLVKNHLMYAVRE--EVEILKEQIRELVEKNSQLERENTLLKTLAS---PEQLEK 51
+D +K+HL A E E+E+L+ ++ E+ EK + EN LK + P Q EK
Sbjct: 45 LDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQYEPPQEEK 100
>gi|120431745 huntingtin-associated protein 1 isoform 4 [Homo
sapiens]
Length = 594
Score = 30.8 bits (68), Expect = 0.25
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 15 EVEILKEQIRELVEKNSQLERENTLLKTLASPEQL 49
++E L+E++R L E+N QL E + L TL EQ+
Sbjct: 313 QLEALQEKLRLLEEENHQLREEASQLDTLEDEEQM 347
>gi|120431743 huntingtin-associated protein 1 isoform 3 [Homo
sapiens]
Length = 602
Score = 30.8 bits (68), Expect = 0.25
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 15 EVEILKEQIRELVEKNSQLERENTLLKTLASPEQL 49
++E L+E++R L E+N QL E + L TL EQ+
Sbjct: 321 QLEALQEKLRLLEEENHQLREEASQLDTLEDEEQM 355
>gi|120431738 huntingtin-associated protein 1 isoform 2 [Homo
sapiens]
Length = 619
Score = 30.8 bits (68), Expect = 0.25
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 15 EVEILKEQIRELVEKNSQLERENTLLKTLASPEQL 49
++E L+E++R L E+N QL E + L TL EQ+
Sbjct: 313 QLEALQEKLRLLEEENHQLREEASQLDTLEDEEQM 347
>gi|31563330 A-kinase anchor protein 13 isoform 1 [Homo sapiens]
Length = 2817
Score = 30.8 bits (68), Expect = 0.25
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 11 AVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEEPAPESPQVPE 70
A ++++E +EQ+R E+ SQ + E L + +L + S P+PE P P
Sbjct: 2660 AAQKQLEREQEQLRREAERLSQRQTERDLCQVSHPHTKLMRIPSFF----PSPEEPPSPS 2715
Query: 71 AP 72
AP
Sbjct: 2716 AP 2717
>gi|21493031 A-kinase anchor protein 13 isoform 3 [Homo sapiens]
Length = 1058
Score = 30.8 bits (68), Expect = 0.25
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 11 AVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEEPAPESPQVPE 70
A ++++E +EQ+R E+ SQ + E L + +L + S P+PE P P
Sbjct: 901 AAQKQLEREQEQLRREAERLSQRQTERDLCQVSHPHTKLMRIPSFF----PSPEEPPSPS 956
Query: 71 AP 72
AP
Sbjct: 957 AP 958
>gi|21493029 A-kinase anchor protein 13 isoform 2 [Homo sapiens]
Length = 2813
Score = 30.8 bits (68), Expect = 0.25
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 11 AVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEEPAPESPQVPE 70
A ++++E +EQ+R E+ SQ + E L + +L + S P+PE P P
Sbjct: 2656 AAQKQLEREQEQLRREAERLSQRQTERDLCQVSHPHTKLMRIPSFF----PSPEEPPSPS 2711
Query: 71 AP 72
AP
Sbjct: 2712 AP 2713
>gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo
sapiens]
Length = 1843
Score = 30.4 bits (67), Expect = 0.32
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 5 KNHLMYAVREEVEILKEQIRELVEKNSQLEREN-TLLKTLAS-------PEQLEKFQSCL 56
+N L+ ++I E+I L ++NS+LEREN L KTL S E LEK S L
Sbjct: 640 ENELLQKKITNLKITCEKIEALEQENSELERENRKLKKTLDSFKNLTFQLESLEKENSQL 699
Query: 57 SPE 59
E
Sbjct: 700 DEE 702
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 4 VKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEK 51
++N + EE++I +++ +L ++N LE+E + L+ +QLEK
Sbjct: 791 MENQTLQKNLEELKISSKRLEQLEKENKSLEQETSQLE--KDKKQLEK 836
>gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo
sapiens]
Length = 1870
Score = 30.4 bits (67), Expect = 0.32
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 5 KNHLMYAVREEVEILKEQIRELVEKNSQLEREN-TLLKTLAS-------PEQLEKFQSCL 56
+N L+ ++I E+I L ++NS+LEREN L KTL S E LEK S L
Sbjct: 640 ENELLQKKITNLKITCEKIEALEQENSELERENRKLKKTLDSFKNLTFQLESLEKENSQL 699
Query: 57 SPE 59
E
Sbjct: 700 DEE 702
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 4 VKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEK 51
++N + EE++I +++ +L ++N LE+E + L+ +QLEK
Sbjct: 791 MENQTLQKNLEELKISSKRLEQLEKENKSLEQETSQLE--KDKKQLEK 836
>gi|60498973 myelin transcription factor 1-like [Homo sapiens]
Length = 1184
Score = 30.4 bits (67), Expect = 0.32
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 14 EEVEILKEQIRELVEKNSQLERENTLLKT 42
EE++ L E+I+EL E NSQ+E + L+T
Sbjct: 1061 EEIKQLDEEIKELNESNSQMEADMIKLRT 1089
>gi|94681063 bromodomain adjacent to zinc finger domain, 2B [Homo
sapiens]
Length = 2168
Score = 30.4 bits (67), Expect = 0.32
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 14 EEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQS--CLSPEEPAPESPQVP 69
EE E LK++ R+ N + + E L+ L ++L+K CL+ ++P PE P++P
Sbjct: 1025 EEKERLKQEKRDEKRLNKERKLEQRRLE-LEMAKELKKPNEDMCLADQKPLPELPRIP 1081
>gi|57863263 testis expressed sequence 14 isoform a [Homo sapiens]
Length = 1491
Score = 30.4 bits (67), Expect = 0.32
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 14 EEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPE-EPAPESPQVPEAP 72
E+ E KE +EL EK+ L L P+ K SC +P+ AP S P +P
Sbjct: 1151 EQEETSKESPKELKEKDISLTDIQDLSSISYEPDSSFKEASCKTPKINHAPTSVSTPLSP 1210
Query: 73 G 73
G
Sbjct: 1211 G 1211
>gi|57863261 testis expressed sequence 14 isoform b [Homo sapiens]
Length = 1451
Score = 30.4 bits (67), Expect = 0.32
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 14 EEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPE-EPAPESPQVPEAP 72
E+ E KE +EL EK+ L L P+ K SC +P+ AP S P +P
Sbjct: 1111 EQEETSKESPKELKEKDISLTDIQDLSSISYEPDSSFKEASCKTPKINHAPTSVSTPLSP 1170
Query: 73 G 73
G
Sbjct: 1171 G 1171
>gi|242117953 SH3 domain-containing protein C1orf113 isoform 1 [Homo
sapiens]
Length = 756
Score = 29.6 bits (65), Expect = 0.55
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 1 MDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEE 60
MD V N M + +E L++ + + + R++ +S E L+K + ++ E+
Sbjct: 464 MDKVPNPKMAPLGDEAPTLEKVLTPELSEEEVSTRDDIQFHHFSSEEALQKVKYFVAKED 523
Query: 61 P-APESPQVPEAP 72
P + E PEAP
Sbjct: 524 PSSQEEAHTPEAP 536
>gi|242117948 SH3 domain-containing protein C1orf113 isoform 2 [Homo
sapiens]
Length = 645
Score = 29.6 bits (65), Expect = 0.55
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 1 MDLVKNHLMYAVREEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLEKFQSCLSPEE 60
MD V N M + +E L++ + + + R++ +S E L+K + ++ E+
Sbjct: 353 MDKVPNPKMAPLGDEAPTLEKVLTPELSEEEVSTRDDIQFHHFSSEEALQKVKYFVAKED 412
Query: 61 P-APESPQVPEAP 72
P + E PEAP
Sbjct: 413 PSSQEEAHTPEAP 425
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.307 0.126 0.337
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,669,321
Number of Sequences: 37866
Number of extensions: 162841
Number of successful extensions: 1830
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 1659
Number of HSP's gapped (non-prelim): 253
length of query: 77
length of database: 18,247,518
effective HSP length: 49
effective length of query: 28
effective length of database: 16,392,084
effective search space: 458978352
effective search space used: 458978352
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.