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Search of human proteins with 62865612
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|62865612 TAF9 RNA polymerase II, TATA box binding
protein-associated factor isoform c [Homo sapiens]
(169 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|62865612 TAF9 RNA polymerase II, TATA box binding protein-ass... 357 2e-99
gi|7706212 TAF9 RNA polymerase II, TATA box binding protein-asso... 342 7e-95
gi|4506431 RAS p21 protein activator 1 isoform 1 [Homo sapiens] 35 0.040
gi|12545406 RAS p21 protein activator 1 isoform 2 [Homo sapiens] 35 0.040
gi|28144897 adenylate kinase 5 isoform 1 [Homo sapiens] 33 0.15
gi|28144899 adenylate kinase 5 isoform 2 [Homo sapiens] 33 0.15
gi|45643125 nuclear VCP-like isoform 2 [Homo sapiens] 33 0.15
gi|45643123 nuclear VCP-like isoform 1 [Homo sapiens] 33 0.15
gi|237858799 adenylate kinase domain containing 1 isoform 1 [Hom... 32 0.20
gi|31742536 fidgetin-like 1 [Homo sapiens] 31 0.58
gi|112789543 fidgetin-like 1 [Homo sapiens] 31 0.58
gi|19923437 adenylate kinase 3 [Homo sapiens] 31 0.58
gi|116325989 hyperpolarization activated cyclic nucleotide-gated... 30 0.99
gi|153792148 threonine synthase-like 1 [Homo sapiens] 30 0.99
gi|4502011 adenylate kinase 1 [Homo sapiens] 30 1.3
gi|62177112 katanin p60 subunit A-like 1 [Homo sapiens] 29 1.7
gi|14149767 katanin p60 subunit A-like 1 [Homo sapiens] 29 1.7
gi|75677353 AAA-ATPase TOB3 [Homo sapiens] 29 1.7
gi|42476028 ATPase family, AAA domain containing 3A [Homo sapiens] 29 1.7
gi|194018490 ATPase family, AAA domain containing 3C [Homo sapiens] 29 1.7
gi|31377644 ATPase family, AAA domain containing 1 [Homo sapiens] 29 1.7
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 29 2.2
gi|7706497 UMP-CMP kinase 1 isoform a [Homo sapiens] 29 2.2
gi|110349756 zygin 2 isoform 2 [Homo sapiens] 29 2.2
gi|110349754 zygin 2 isoform 1 [Homo sapiens] 29 2.2
gi|115298659 spectrin, alpha, erythrocytic 1 [Homo sapiens] 28 2.9
gi|148727333 adenylate kinase 7 [Homo sapiens] 28 2.9
gi|157671927 spermatogenesis associated 5 [Homo sapiens] 28 2.9
gi|53832001 adenylate kinase 3-like 1 isoform 7 [Homo sapiens] 28 3.8
gi|53832003 adenylate kinase 3-like 1 isoform 5 [Homo sapiens] 28 3.8
>gi|62865612 TAF9 RNA polymerase II, TATA box binding
protein-associated factor isoform c [Homo sapiens]
Length = 169
Score = 357 bits (917), Expect = 2e-99
Identities = 169/169 (100%), Positives = 169/169 (100%)
Query: 1 MCHRKPGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVD 60
MCHRKPGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVD
Sbjct: 1 MCHRKPGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVD 60
Query: 61 ELDNQMREGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCE 120
ELDNQMREGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCE
Sbjct: 61 ELDNQMREGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCE 120
Query: 121 IFQVLYEEATASYKEEIVHQLPSNKPEELENNVDQILKWIEQWIKDHNS 169
IFQVLYEEATASYKEEIVHQLPSNKPEELENNVDQILKWIEQWIKDHNS
Sbjct: 121 IFQVLYEEATASYKEEIVHQLPSNKPEELENNVDQILKWIEQWIKDHNS 169
>gi|7706212 TAF9 RNA polymerase II, TATA box binding
protein-associated factor isoform b [Homo sapiens]
Length = 172
Score = 342 bits (878), Expect = 7e-95
Identities = 163/163 (100%), Positives = 163/163 (100%)
Query: 7 GTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQM 66
GTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQM
Sbjct: 10 GTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQM 69
Query: 67 REGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLY 126
REGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLY
Sbjct: 70 REGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLY 129
Query: 127 EEATASYKEEIVHQLPSNKPEELENNVDQILKWIEQWIKDHNS 169
EEATASYKEEIVHQLPSNKPEELENNVDQILKWIEQWIKDHNS
Sbjct: 130 EEATASYKEEIVHQLPSNKPEELENNVDQILKWIEQWIKDHNS 172
>gi|4506431 RAS p21 protein activator 1 isoform 1 [Homo sapiens]
Length = 1047
Score = 34.7 bits (78), Expect = 0.040
Identities = 28/123 (22%), Positives = 56/123 (45%), Gaps = 28/123 (22%)
Query: 25 GLKYINVGDLA---REEQLYDGYDEEYDCPILDEDRVVDE-------------------L 62
G Y ++GD+ R+EQ+ +GY + P+ D+++V+++
Sbjct: 413 GRYYNSIGDIIDHYRKEQIVEGYYLKEPVPMQDQEQVLNDTVDGKEIYNTIRRKTKDAFY 472
Query: 63 DNQMREGGVIVDYHGCDFFPERWFHIVFVLR-TDTNVLYERLETRGYNEKKLTDNIQCEI 121
N +++G ++ G +RW ++ F+L +D ++Y E R K L D C +
Sbjct: 473 KNIVKKGYLLKKGKG-----KRWKNLYFILEGSDAQLIYFESEKRATKPKGLIDLSVCSV 527
Query: 122 FQV 124
+ V
Sbjct: 528 YVV 530
>gi|12545406 RAS p21 protein activator 1 isoform 2 [Homo sapiens]
Length = 870
Score = 34.7 bits (78), Expect = 0.040
Identities = 28/123 (22%), Positives = 56/123 (45%), Gaps = 28/123 (22%)
Query: 25 GLKYINVGDLA---REEQLYDGYDEEYDCPILDEDRVVDE-------------------L 62
G Y ++GD+ R+EQ+ +GY + P+ D+++V+++
Sbjct: 236 GRYYNSIGDIIDHYRKEQIVEGYYLKEPVPMQDQEQVLNDTVDGKEIYNTIRRKTKDAFY 295
Query: 63 DNQMREGGVIVDYHGCDFFPERWFHIVFVLR-TDTNVLYERLETRGYNEKKLTDNIQCEI 121
N +++G ++ G +RW ++ F+L +D ++Y E R K L D C +
Sbjct: 296 KNIVKKGYLLKKGKG-----KRWKNLYFILEGSDAQLIYFESEKRATKPKGLIDLSVCSV 350
Query: 122 FQV 124
+ V
Sbjct: 351 YVV 353
>gi|28144897 adenylate kinase 5 isoform 1 [Homo sapiens]
Length = 562
Score = 32.7 bits (73), Expect = 0.15
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 7 GTPGVGKTTLGKELASKSGLKYINVGDLAREE 38
G PG GK T ++A + G +YI+VG+L R++
Sbjct: 139 GGPGSGKGTQSLKIAERYGFQYISVGELLRKK 170
Score = 31.2 bits (69), Expect = 0.44
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 7 GTPGVGKTTLGKELASKSGLKYINVGDLAREE 38
G PG GK T ++L K G +++ G+L REE
Sbjct: 383 GGPGSGKGTQCEKLVEKYGFTHLSTGELLREE 414
>gi|28144899 adenylate kinase 5 isoform 2 [Homo sapiens]
Length = 536
Score = 32.7 bits (73), Expect = 0.15
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 7 GTPGVGKTTLGKELASKSGLKYINVGDLAREE 38
G PG GK T ++A + G +YI+VG+L R++
Sbjct: 113 GGPGSGKGTQSLKIAERYGFQYISVGELLRKK 144
Score = 31.2 bits (69), Expect = 0.44
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 7 GTPGVGKTTLGKELASKSGLKYINVGDLAREE 38
G PG GK T ++L K G +++ G+L REE
Sbjct: 357 GGPGSGKGTQCEKLVEKYGFTHLSTGELLREE 388
>gi|45643125 nuclear VCP-like isoform 2 [Homo sapiens]
Length = 750
Score = 32.7 bits (73), Expect = 0.15
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 7 GTPGVGKTTLGKELASKSGLKYINV 31
G PG GKT L K +A++SGL +I+V
Sbjct: 516 GPPGCGKTLLAKAVANESGLNFISV 540
>gi|45643123 nuclear VCP-like isoform 1 [Homo sapiens]
Length = 856
Score = 32.7 bits (73), Expect = 0.15
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 7 GTPGVGKTTLGKELASKSGLKYINV 31
G PG GKT L K +A++SGL +I+V
Sbjct: 622 GPPGCGKTLLAKAVANESGLNFISV 646
>gi|237858799 adenylate kinase domain containing 1 isoform 1 [Homo
sapiens]
Length = 1911
Score = 32.3 bits (72), Expect = 0.20
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 7 GTPGVGKTTLGKELASKSGLKYINVGDLAR 36
G P GKTT+ K++ S+ GLK++++G R
Sbjct: 1418 GPPKSGKTTVAKKITSEYGLKHLSIGGALR 1447
>gi|31742536 fidgetin-like 1 [Homo sapiens]
Length = 674
Score = 30.8 bits (68), Expect = 0.58
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 7 GTPGVGKTTLGKELASKSGLKYINV 31
G PG GKT +GK +AS+SG + ++
Sbjct: 441 GPPGTGKTLIGKCIASQSGATFFSI 465
>gi|112789543 fidgetin-like 1 [Homo sapiens]
Length = 674
Score = 30.8 bits (68), Expect = 0.58
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 7 GTPGVGKTTLGKELASKSGLKYINV 31
G PG GKT +GK +AS+SG + ++
Sbjct: 441 GPPGTGKTLIGKCIASQSGATFFSI 465
>gi|19923437 adenylate kinase 3 [Homo sapiens]
Length = 227
Score = 30.8 bits (68), Expect = 0.58
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 7 GTPGVGKTTLGKELASKSGLKYINVGDLAREEQL 40
G PG GK T+ + + LK+++ GDL R+ L
Sbjct: 14 GAPGSGKGTVSSRITTHFELKHLSSGDLLRDNML 47
>gi|116325989 hyperpolarization activated cyclic nucleotide-gated
potassium channel 1 [Homo sapiens]
Length = 890
Score = 30.0 bits (66), Expect = 0.99
Identities = 10/31 (32%), Positives = 22/31 (70%)
Query: 38 EQLYDGYDEEYDCPILDEDRVVDELDNQMRE 68
++++D Y+ Y I DE+ +++EL++ +RE
Sbjct: 429 QKIHDYYEHRYQGKIFDEENILNELNDPLRE 459
>gi|153792148 threonine synthase-like 1 [Homo sapiens]
Length = 743
Score = 30.0 bits (66), Expect = 0.99
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 8/50 (16%)
Query: 7 GTPGVGKTTLGKELASKSGLKYINVGD--------LAREEQLYDGYDEEY 48
G PG GKTT+G+ + K G I+V D ++ E+L D +E++
Sbjct: 62 GPPGAGKTTVGRIIGQKLGCCVIDVDDDILEKTWNMSVSEKLQDVGNEQF 111
>gi|4502011 adenylate kinase 1 [Homo sapiens]
Length = 194
Score = 29.6 bits (65), Expect = 1.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 7 GTPGVGKTTLGKELASKSGLKYINVGDLAREE 38
G PG GK T +++ K G +++ GDL R E
Sbjct: 15 GGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSE 46
>gi|62177112 katanin p60 subunit A-like 1 [Homo sapiens]
Length = 490
Score = 29.3 bits (64), Expect = 1.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 7 GTPGVGKTTLGKELASKSGLKYINV 31
G PG GKT L K +A++ G + NV
Sbjct: 248 GPPGTGKTMLAKAVATECGTTFFNV 272
>gi|14149767 katanin p60 subunit A-like 1 [Homo sapiens]
Length = 490
Score = 29.3 bits (64), Expect = 1.7
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 7 GTPGVGKTTLGKELASKSGLKYINV 31
G PG GKT L K +A++ G + NV
Sbjct: 248 GPPGTGKTMLAKAVATECGTTFFNV 272
>gi|75677353 AAA-ATPase TOB3 [Homo sapiens]
Length = 648
Score = 29.3 bits (64), Expect = 1.7
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 7 GTPGVGKTTLGKELASKSGLKY--INVGDLA 35
G PG GKT K+LA SG+ Y + GD+A
Sbjct: 352 GPPGTGKTLFAKKLALHSGMDYAIMTGGDVA 382
>gi|42476028 ATPase family, AAA domain containing 3A [Homo sapiens]
Length = 634
Score = 29.3 bits (64), Expect = 1.7
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 7 GTPGVGKTTLGKELASKSGLKY--INVGDLA 35
G PG GKT K+LA SG+ Y + GD+A
Sbjct: 400 GPPGTGKTLFAKKLALHSGMDYAIMTGGDVA 430
>gi|194018490 ATPase family, AAA domain containing 3C [Homo sapiens]
Length = 411
Score = 29.3 bits (64), Expect = 1.7
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 7 GTPGVGKTTLGKELASKSGLKY--INVGDLA 35
G PG GKT K+LA SG+ Y + GD+A
Sbjct: 177 GPPGTGKTLFAKKLALHSGMDYAIMTGGDVA 207
>gi|31377644 ATPase family, AAA domain containing 1 [Homo sapiens]
Length = 361
Score = 29.3 bits (64), Expect = 1.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 7 GTPGVGKTTLGKELASKSGLKYINV 31
G PG GKT + K A ++G ++IN+
Sbjct: 133 GPPGCGKTLIAKATAKEAGCRFINL 157
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 28.9 bits (63), Expect = 2.2
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 38 EQLYDGYDEEYDCPILDEDRVVDELDNQMRE 68
++++D Y+ Y + DED ++ EL+ +RE
Sbjct: 498 QKIHDYYEHRYQGKMFDEDSILGELNGPLRE 528
>gi|7706497 UMP-CMP kinase 1 isoform a [Homo sapiens]
Length = 228
Score = 28.9 bits (63), Expect = 2.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 7 GTPGVGKTTLGKELASKSGLKYINVGDLAREEQ 39
G PG GK T + K G +++ G+L R+E+
Sbjct: 42 GGPGAGKGTQCARIVEKYGYTHLSAGELLRDER 74
>gi|110349756 zygin 2 isoform 2 [Homo sapiens]
Length = 380
Score = 28.9 bits (63), Expect = 2.2
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 49 DCPILDEDRVVDELDNQMREGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGY 108
D P+ D+V++E++ M+E D D P + + +L + L +R T Y
Sbjct: 156 DEPLFTADQVIEEIEEMMQESPDPED----DETPTQSDRL-SMLSQEIQTL-KRSSTGSY 209
Query: 109 NE--KKLTDNIQCEIFQVLYEEATASYKEEIVHQLPSNKPEELENNV 153
E K+L+ + EI + + E A Y EE+V QL E E V
Sbjct: 210 EERVKRLSVSELNEILEEI-ETAIKEYSEELVQQLALRDELEFEKEV 255
>gi|110349754 zygin 2 isoform 1 [Homo sapiens]
Length = 353
Score = 28.9 bits (63), Expect = 2.2
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 49 DCPILDEDRVVDELDNQMREGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGY 108
D P+ D+V++E++ M+E D D P + + +L + L +R T Y
Sbjct: 156 DEPLFTADQVIEEIEEMMQESPDPED----DETPTQSDRL-SMLSQEIQTL-KRSSTGSY 209
Query: 109 NE--KKLTDNIQCEIFQVLYEEATASYKEEIVHQLPSNKPEELENNV 153
E K+L+ + EI + + E A Y EE+V QL E E V
Sbjct: 210 EERVKRLSVSELNEILEEI-ETAIKEYSEELVQQLALRDELEFEKEV 255
>gi|115298659 spectrin, alpha, erythrocytic 1 [Homo sapiens]
Length = 2419
Score = 28.5 bits (62), Expect = 2.9
Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 114 TDNIQCEIFQV--LYEEATASYKEEIVHQLPSNKPEELENNVDQILKWIE 161
+DN+ + +V L+EE + K++ +N+ + ENN + + +W+E
Sbjct: 655 SDNVTTRLSEVASLWEELLEATKQKGTQLHEANQQLQFENNAEDLQRWLE 704
>gi|148727333 adenylate kinase 7 [Homo sapiens]
Length = 723
Score = 28.5 bits (62), Expect = 2.9
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 7 GTPGVGKTTLGKELASKSGLKYINVGDLARE 37
G P VGK+++ KELA+ L +I + D+ E
Sbjct: 374 GPPAVGKSSIAKELANYYKLHHIQLKDVISE 404
>gi|157671927 spermatogenesis associated 5 [Homo sapiens]
Length = 893
Score = 28.5 bits (62), Expect = 2.9
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 7 GTPGVGKTTLGKELASKSGLKYINV 31
G PG KT + K LA++SGL ++ +
Sbjct: 668 GPPGCSKTMIAKALANESGLNFLAI 692
>gi|53832001 adenylate kinase 3-like 1 isoform 7 [Homo sapiens]
Length = 223
Score = 28.1 bits (61), Expect = 3.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 7 GTPGVGKTTLGKELASKSGLKYINVGDLARE 37
G PG GK T+ + +A GL++++ G RE
Sbjct: 12 GPPGSGKGTVCQRIAQNFGLQHLSSGHFLRE 42
>gi|53832003 adenylate kinase 3-like 1 isoform 5 [Homo sapiens]
Length = 223
Score = 28.1 bits (61), Expect = 3.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 7 GTPGVGKTTLGKELASKSGLKYINVGDLARE 37
G PG GK T+ + +A GL++++ G RE
Sbjct: 12 GPPGSGKGTVCQRIAQNFGLQHLSSGHFLRE 42
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.138 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,114,541
Number of Sequences: 37866
Number of extensions: 311075
Number of successful extensions: 918
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 876
Number of HSP's gapped (non-prelim): 53
length of query: 169
length of database: 18,247,518
effective HSP length: 95
effective length of query: 74
effective length of database: 14,650,248
effective search space: 1084118352
effective search space used: 1084118352
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.