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Search of human proteins with 62860046
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|62860046 zinc finger, RAN-binding domain containing 3 [Homo
sapiens]
(1079 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|62860046 zinc finger, RAN-binding domain containing 3 [Homo s... 2185 0.0
gi|21071060 SWI/SNF-related matrix-associated actin-dependent re... 351 2e-96
gi|187761314 SWI/SNF-related matrix-associated actin-dependent r... 351 2e-96
gi|190358536 SWI/SNF-related, matrix-associated actin-dependent ... 150 8e-36
gi|190358532 SWI/SNF-related, matrix-associated actin-dependent ... 150 8e-36
gi|190358534 SWI/SNF-related, matrix-associated actin-dependent ... 149 1e-35
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 148 2e-35
gi|148612870 chromodomain helicase DNA binding protein 1-like [H... 137 4e-32
gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription facto... 137 5e-32
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 136 1e-31
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 134 6e-31
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 134 6e-31
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 130 7e-30
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 129 1e-29
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 129 1e-29
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 129 1e-29
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 129 1e-29
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 129 1e-29
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 129 1e-29
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 129 1e-29
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 128 3e-29
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 128 3e-29
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 128 3e-29
gi|21071058 SWI/SNF-related matrix-associated actin-dependent re... 128 3e-29
gi|114326455 chromodomain helicase DNA binding protein 8 [Homo s... 127 4e-29
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa... 127 6e-29
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa... 124 4e-28
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 124 4e-28
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 122 2e-27
gi|164419749 SWI/SNF-related matrix-associated actin-dependent r... 122 2e-27
>gi|62860046 zinc finger, RAN-binding domain containing 3 [Homo
sapiens]
Length = 1079
Score = 2185 bits (5662), Expect = 0.0
Identities = 1079/1079 (100%), Positives = 1079/1079 (100%)
Query: 1 MPRVHNIKKSLTPHISCVTNESDNLLDFLPDRLRAKLLPFQKDGIIFALKRNGRCMVADE 60
MPRVHNIKKSLTPHISCVTNESDNLLDFLPDRLRAKLLPFQKDGIIFALKRNGRCMVADE
Sbjct: 1 MPRVHNIKKSLTPHISCVTNESDNLLDFLPDRLRAKLLPFQKDGIIFALKRNGRCMVADE 60
Query: 61 MGLGKTIQAIGITYFYKEEWPLLIVVPSSLRYPWTEEIEKWIPELSPEEINVIQNKTDVR 120
MGLGKTIQAIGITYFYKEEWPLLIVVPSSLRYPWTEEIEKWIPELSPEEINVIQNKTDVR
Sbjct: 61 MGLGKTIQAIGITYFYKEEWPLLIVVPSSLRYPWTEEIEKWIPELSPEEINVIQNKTDVR 120
Query: 121 RMSTSKVTVLGYGLLTADAKTLIDALNNQNFKVVIVDESHYMKSRNATRSRILLPIVQKA 180
RMSTSKVTVLGYGLLTADAKTLIDALNNQNFKVVIVDESHYMKSRNATRSRILLPIVQKA
Sbjct: 121 RMSTSKVTVLGYGLLTADAKTLIDALNNQNFKVVIVDESHYMKSRNATRSRILLPIVQKA 180
Query: 181 RRAILLTGTPALGRPEELFMQIEALFPQKFGRWTDYAKRYCNAHIRYFGKRPQWDCRGAS 240
RRAILLTGTPALGRPEELFMQIEALFPQKFGRWTDYAKRYCNAHIRYFGKRPQWDCRGAS
Sbjct: 181 RRAILLTGTPALGRPEELFMQIEALFPQKFGRWTDYAKRYCNAHIRYFGKRPQWDCRGAS 240
Query: 241 NLNELHQLLSDIMIRRLKTEVLTQLPPKVRQRIPFDLPSAAAKELNTSFEEWEKIMRTPN 300
NLNELHQLLSDIMIRRLKTEVLTQLPPKVRQRIPFDLPSAAAKELNTSFEEWEKIMRTPN
Sbjct: 241 NLNELHQLLSDIMIRRLKTEVLTQLPPKVRQRIPFDLPSAAAKELNTSFEEWEKIMRTPN 300
Query: 301 SGAMETVMGLITRMFKQTAIAKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIE 360
SGAMETVMGLITRMFKQTAIAKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIE
Sbjct: 301 SGAMETVMGLITRMFKQTAIAKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIE 360
Query: 361 NKTRYIRIDGSVSSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTAASHVVFAELYWD 420
NKTRYIRIDGSVSSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTAASHVVFAELYWD
Sbjct: 361 NKTRYIRIDGSVSSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTAASHVVFAELYWD 420
Query: 421 PGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKIQAE 480
PGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKIQAE
Sbjct: 421 PGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKIQAE 480
Query: 481 EGDKEKWDFLQFAEAWTPNDSSEELRKEALFTHFEKEKQHDIRSFFVPQPKKRQLMTSCD 540
EGDKEKWDFLQFAEAWTPNDSSEELRKEALFTHFEKEKQHDIRSFFVPQPKKRQLMTSCD
Sbjct: 481 EGDKEKWDFLQFAEAWTPNDSSEELRKEALFTHFEKEKQHDIRSFFVPQPKKRQLMTSCD 540
Query: 541 ESKRFREENTVVSSDPTKTAARDIIDYESDVEPETKRLKLAASEDHCSPSEETPSQSKQI 600
ESKRFREENTVVSSDPTKTAARDIIDYESDVEPETKRLKLAASEDHCSPSEETPSQSKQI
Sbjct: 541 ESKRFREENTVVSSDPTKTAARDIIDYESDVEPETKRLKLAASEDHCSPSEETPSQSKQI 600
Query: 601 RTPLVESVQEAKAQLTTPAFPVEGWQCSLCTYINNSELPYCEMCETPQGSAVMQIDSLNH 660
RTPLVESVQEAKAQLTTPAFPVEGWQCSLCTYINNSELPYCEMCETPQGSAVMQIDSLNH
Sbjct: 601 RTPLVESVQEAKAQLTTPAFPVEGWQCSLCTYINNSELPYCEMCETPQGSAVMQIDSLNH 660
Query: 661 IQDKNEKDDSQKDTSKKVQTISDCEKQALAQSEPGQLADSKEETPKIEKEDGLTSQPGNE 720
IQDKNEKDDSQKDTSKKVQTISDCEKQALAQSEPGQLADSKEETPKIEKEDGLTSQPGNE
Sbjct: 661 IQDKNEKDDSQKDTSKKVQTISDCEKQALAQSEPGQLADSKEETPKIEKEDGLTSQPGNE 720
Query: 721 QWKSSDTLPVYDTLMFCASRNTDRIHIYTKDGKQMSCNFIPLDIKLDLWEDLPASFQLKQ 780
QWKSSDTLPVYDTLMFCASRNTDRIHIYTKDGKQMSCNFIPLDIKLDLWEDLPASFQLKQ
Sbjct: 721 QWKSSDTLPVYDTLMFCASRNTDRIHIYTKDGKQMSCNFIPLDIKLDLWEDLPASFQLKQ 780
Query: 781 YRSLILRFVREWSSLTAMKQRIIRKSGQLFCSPILALEEITKQQTKQNCTKRYITKEDVA 840
YRSLILRFVREWSSLTAMKQRIIRKSGQLFCSPILALEEITKQQTKQNCTKRYITKEDVA
Sbjct: 781 YRSLILRFVREWSSLTAMKQRIIRKSGQLFCSPILALEEITKQQTKQNCTKRYITKEDVA 840
Query: 841 VASMDKVKNVGGHVRLITKESRPRDPFTKKLLEDGACVPFLNPYTVQADLTVKPSTSKGY 900
VASMDKVKNVGGHVRLITKESRPRDPFTKKLLEDGACVPFLNPYTVQADLTVKPSTSKGY
Sbjct: 841 VASMDKVKNVGGHVRLITKESRPRDPFTKKLLEDGACVPFLNPYTVQADLTVKPSTSKGY 900
Query: 901 LQAVDNEGNPLCLRCQQPTCQTKQACKANSWDSRFCSLKCQEEFWIRSNNSYLRAKVFET 960
LQAVDNEGNPLCLRCQQPTCQTKQACKANSWDSRFCSLKCQEEFWIRSNNSYLRAKVFET
Sbjct: 901 LQAVDNEGNPLCLRCQQPTCQTKQACKANSWDSRFCSLKCQEEFWIRSNNSYLRAKVFET 960
Query: 961 EHGVCQLCNVNAQELFLRLRDAPKSQRKNLLYATWTSKLPLEQLNEMIRNPGEGHFWQVD 1020
EHGVCQLCNVNAQELFLRLRDAPKSQRKNLLYATWTSKLPLEQLNEMIRNPGEGHFWQVD
Sbjct: 961 EHGVCQLCNVNAQELFLRLRDAPKSQRKNLLYATWTSKLPLEQLNEMIRNPGEGHFWQVD 1020
Query: 1021 HIKPVYGGGGQCSLDNLQTLCTVCHKERTARQAKERSQVRRQSLASKHGSDITRFLVKK 1079
HIKPVYGGGGQCSLDNLQTLCTVCHKERTARQAKERSQVRRQSLASKHGSDITRFLVKK
Sbjct: 1021 HIKPVYGGGGQCSLDNLQTLCTVCHKERTARQAKERSQVRRQSLASKHGSDITRFLVKK 1079
>gi|21071060 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a-like 1 [Homo sapiens]
Length = 954
Score = 351 bits (900), Expect = 2e-96
Identities = 202/457 (44%), Positives = 285/457 (62%), Gaps = 20/457 (4%)
Query: 10 SLTPHISCVTNESDNLLDFLPDRLRAKLLPFQKDGIIFALKRNGRCMVADEMGLGKTIQA 69
SLTP + E+D L + +L + L+PFQ+ G+ FA+ + GR ++AD+MGLGKTIQA
Sbjct: 415 SLTPDVP----EAD--LSEVDPKLVSNLMPFQRAGVNFAIAKGGRLLLADDMGLGKTIQA 468
Query: 70 IGITYFYKEEWPLLIVVPSSLRYPWTEEIEKWIPELSPEEINVIQNKTDVRRMSTSKVTV 129
I I FY++EWPLL+VVPSS+R+ W + +W+P LSP+ INV+ D R++ + +
Sbjct: 469 ICIAAFYRKEWPLLVVVPSSVRFTWEQAFLRWLPSLSPDCINVVVTGKD--RLTAGLINI 526
Query: 130 LGYGLLTADAKTLIDALNNQNFKVVIVDESHYMKSRNATRSRILLPIVQKARRAILLTGT 189
+ + LL+ K L FKVVI+DESH++K+ R R +P+++ A+R ILL+GT
Sbjct: 527 VSFDLLSKLEKQL-----KTPFKVVIIDESHFLKNSRTARCRAAMPVLKVAKRVILLSGT 581
Query: 190 PALGRPEELFMQIEALFPQKFGRWTDYAKRYCNAHIRYFGKRPQWDCRGASNLNELHQLL 249
PA+ RP EL+ QI A+ P F ++ + RYC+A +G WD G+SNL EL LL
Sbjct: 582 PAMSRPAELYTQIIAVKPTFFPQFHAFGLRYCDAKRMPWG----WDYSGSSNLGELKLLL 637
Query: 250 SD-IMIRRLKTEVLTQLPPKVRQRIPFDLPSAAAKELNTSFEEWEKIMRTPNSGAMETVM 308
+ +M+RRLK++VL+QLP K R +I P + + K M T + +
Sbjct: 638 EEAVMLRRLKSDVLSQLPAKQR-KIVVIAPGRINARTRAALDAAAKEMTTKDKTKQQQKD 696
Query: 309 GLITRMFKQTAIAKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRI 368
LI F +TA AK +V +YI +L++ KFLVFAHH +L A T+ + ++IRI
Sbjct: 697 ALIL-FFNRTAEAKIPSVIEYILDLLESGREKFLVFAHHKVVLDAITQELERKHVQHIRI 755
Query: 369 DGSVSSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTAASHVVFAELYWDPGHIKQAE 428
DGS SS+ER L QFQ VA+LSI AA GLTF++A VVFAEL+W+PG + QAE
Sbjct: 756 DGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTFSSADLVVFAELFWNPGVLIQAE 815
Query: 429 DRAHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQV 465
DR HRIGQ SSV IHYL+A GT D +W ++ K +V
Sbjct: 816 DRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV 852
>gi|187761314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a-like 1 [Homo sapiens]
Length = 954
Score = 351 bits (900), Expect = 2e-96
Identities = 202/457 (44%), Positives = 285/457 (62%), Gaps = 20/457 (4%)
Query: 10 SLTPHISCVTNESDNLLDFLPDRLRAKLLPFQKDGIIFALKRNGRCMVADEMGLGKTIQA 69
SLTP + E+D L + +L + L+PFQ+ G+ FA+ + GR ++AD+MGLGKTIQA
Sbjct: 415 SLTPDVP----EAD--LSEVDPKLVSNLMPFQRAGVNFAIAKGGRLLLADDMGLGKTIQA 468
Query: 70 IGITYFYKEEWPLLIVVPSSLRYPWTEEIEKWIPELSPEEINVIQNKTDVRRMSTSKVTV 129
I I FY++EWPLL+VVPSS+R+ W + +W+P LSP+ INV+ D R++ + +
Sbjct: 469 ICIAAFYRKEWPLLVVVPSSVRFTWEQAFLRWLPSLSPDCINVVVTGKD--RLTAGLINI 526
Query: 130 LGYGLLTADAKTLIDALNNQNFKVVIVDESHYMKSRNATRSRILLPIVQKARRAILLTGT 189
+ + LL+ K L FKVVI+DESH++K+ R R +P+++ A+R ILL+GT
Sbjct: 527 VSFDLLSKLEKQL-----KTPFKVVIIDESHFLKNSRTARCRAAMPVLKVAKRVILLSGT 581
Query: 190 PALGRPEELFMQIEALFPQKFGRWTDYAKRYCNAHIRYFGKRPQWDCRGASNLNELHQLL 249
PA+ RP EL+ QI A+ P F ++ + RYC+A +G WD G+SNL EL LL
Sbjct: 582 PAMSRPAELYTQIIAVKPTFFPQFHAFGLRYCDAKRMPWG----WDYSGSSNLGELKLLL 637
Query: 250 SD-IMIRRLKTEVLTQLPPKVRQRIPFDLPSAAAKELNTSFEEWEKIMRTPNSGAMETVM 308
+ +M+RRLK++VL+QLP K R +I P + + K M T + +
Sbjct: 638 EEAVMLRRLKSDVLSQLPAKQR-KIVVIAPGRINARTRAALDAAAKEMTTKDKTKQQQKD 696
Query: 309 GLITRMFKQTAIAKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRI 368
LI F +TA AK +V +YI +L++ KFLVFAHH +L A T+ + ++IRI
Sbjct: 697 ALIL-FFNRTAEAKIPSVIEYILDLLESGREKFLVFAHHKVVLDAITQELERKHVQHIRI 755
Query: 369 DGSVSSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTAASHVVFAELYWDPGHIKQAE 428
DGS SS+ER L QFQ VA+LSI AA GLTF++A VVFAEL+W+PG + QAE
Sbjct: 756 DGSTSSAEREDLCQQFQLSERHAVAVLSITAANMGLTFSSADLVVFAELFWNPGVLIQAE 815
Query: 429 DRAHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQV 465
DR HRIGQ SSV IHYL+A GT D +W ++ K +V
Sbjct: 816 DRVHRIGQTSSVGIHYLVAKGTADDYLWPLIQEKIKV 852
>gi|190358536 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 150 bits (378), Expect = 8e-36
Identities = 152/569 (26%), Positives = 243/569 (42%), Gaps = 101/569 (17%)
Query: 1 MPRVHNIKKSLTPHISCVTNESDNLLDFLPDRLRAKLL--PFQKDGIIFAL---KRNGRC 55
M + +I LT ++ +T P L L P+QK G+ + K
Sbjct: 459 MNKCEDISNKLTKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNG 518
Query: 56 MVADEMGLGKTIQAIG-ITYFYKE--EWPLLIVVPSSLRYPWTEEIEKWIPEL------- 105
++ADEMGLGKTIQAI + Y Y+E P LIVVP+S W E+ W P L
Sbjct: 519 ILADEMGLGKTIQAIAFLAYLYQEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYG 578
Query: 106 SPEEINVIQNKTDVRRMSTSK-VTVLGYGLLTADAKTLIDALNNQNFKVVIVDESHYMKS 164
S EE I+ R + VT + ++D ++L L I DE H +K+
Sbjct: 579 SQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRL---KLNYAIFDEGHMLKN 635
Query: 165 RNATRSRILLPIVQKARRAILLTGTPALGRPEELFMQIEALFPQKFGRWTDYAKRYCNAH 224
+ R + L+ I A +LLTGTP EL + + P F T +R ++
Sbjct: 636 MGSIRYQHLMTI--NANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSK 693
Query: 225 IRYFGKRPQWDCRGASNLNELHQLLSDIMIRRLKTEVLTQLPPKVRQRIPFDLPSAAAKE 284
+ ++ ++ + Q++ ++RR+K EVL QLPPK + RI S ++
Sbjct: 694 TKSADEQSIYE---KERIAHAKQIIKPFILRRVKEEVLKQLPPK-KDRIELCAMSEKQEQ 749
Query: 285 LNTS-FEEWEKIMR---TPNSGAMETVMGLITRMFKQTAIAK----AGAVKDYIKMMLQN 336
L F +K + T + M VM + +M + + A +K+ ++ML+
Sbjct: 750 LYLGLFNRLKKSINNLVTEKNTEMCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKE 809
Query: 337 --------------------------------------------DSLKFLVFAHHLSMLQ 352
DS KF V LS L+
Sbjct: 810 PTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELK 869
Query: 353 ACTEAVI-----------------ENKTRYIRIDGSVSSSERIHLVNQFQKDPDTRVAIL 395
+ V+ ++ RY+R+DG SERIHL+++F D D V +L
Sbjct: 870 QKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLL 929
Query: 396 SIQAAGQGLTFTAASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLM 455
S +A G G+ T+A+ V+ ++ +P + KQAEDR HR+GQ V + LI+ GT++ M
Sbjct: 930 STKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESM 989
Query: 456 WGMLNRKAQVTGSTLNGRKEKIQAEEGDK 484
+ +K ++ ++ +EGD+
Sbjct: 990 LKINQQKLKL-------EQDMTTVDEGDE 1011
>gi|190358532 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 150 bits (378), Expect = 8e-36
Identities = 152/569 (26%), Positives = 243/569 (42%), Gaps = 101/569 (17%)
Query: 1 MPRVHNIKKSLTPHISCVTNESDNLLDFLPDRLRAKLL--PFQKDGIIFAL---KRNGRC 55
M + +I LT ++ +T P L L P+QK G+ + K
Sbjct: 459 MNKCEDISNKLTKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNG 518
Query: 56 MVADEMGLGKTIQAIG-ITYFYKE--EWPLLIVVPSSLRYPWTEEIEKWIPEL------- 105
++ADEMGLGKTIQAI + Y Y+E P LIVVP+S W E+ W P L
Sbjct: 519 ILADEMGLGKTIQAIAFLAYLYQEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYG 578
Query: 106 SPEEINVIQNKTDVRRMSTSK-VTVLGYGLLTADAKTLIDALNNQNFKVVIVDESHYMKS 164
S EE I+ R + VT + ++D ++L L I DE H +K+
Sbjct: 579 SQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRL---KLNYAIFDEGHMLKN 635
Query: 165 RNATRSRILLPIVQKARRAILLTGTPALGRPEELFMQIEALFPQKFGRWTDYAKRYCNAH 224
+ R + L+ I A +LLTGTP EL + + P F T +R ++
Sbjct: 636 MGSIRYQHLMTI--NANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSK 693
Query: 225 IRYFGKRPQWDCRGASNLNELHQLLSDIMIRRLKTEVLTQLPPKVRQRIPFDLPSAAAKE 284
+ ++ ++ + Q++ ++RR+K EVL QLPPK + RI S ++
Sbjct: 694 TKSADEQSIYE---KERIAHAKQIIKPFILRRVKEEVLKQLPPK-KDRIELCAMSEKQEQ 749
Query: 285 LNTS-FEEWEKIMR---TPNSGAMETVMGLITRMFKQTAIAK----AGAVKDYIKMMLQN 336
L F +K + T + M VM + +M + + A +K+ ++ML+
Sbjct: 750 LYLGLFNRLKKSINNLVTEKNTEMCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKE 809
Query: 337 --------------------------------------------DSLKFLVFAHHLSMLQ 352
DS KF V LS L+
Sbjct: 810 PTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELK 869
Query: 353 ACTEAVI-----------------ENKTRYIRIDGSVSSSERIHLVNQFQKDPDTRVAIL 395
+ V+ ++ RY+R+DG SERIHL+++F D D V +L
Sbjct: 870 QKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLL 929
Query: 396 SIQAAGQGLTFTAASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLM 455
S +A G G+ T+A+ V+ ++ +P + KQAEDR HR+GQ V + LI+ GT++ M
Sbjct: 930 STKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESM 989
Query: 456 WGMLNRKAQVTGSTLNGRKEKIQAEEGDK 484
+ +K ++ ++ +EGD+
Sbjct: 990 LKINQQKLKL-------EQDMTTVDEGDE 1011
>gi|190358534 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform b [Homo sapiens]
Length = 1026
Score = 149 bits (377), Expect = 1e-35
Identities = 152/567 (26%), Positives = 242/567 (42%), Gaps = 99/567 (17%)
Query: 1 MPRVHNIKKSLTPHISCVTNESDNLLDFLPDRLRAKLL--PFQKDGIIFAL---KRNGRC 55
M + +I LT ++ +T P L L P+QK G+ + K
Sbjct: 459 MNKCEDISNKLTKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNG 518
Query: 56 MVADEMGLGKTIQAIG-ITYFYKE--EWPLLIVVPSSLRYPWTEEIEKWIPEL------- 105
++ADEMGLGKTIQAI + Y Y+E P LIVVP+S W E+ W P L
Sbjct: 519 ILADEMGLGKTIQAIAFLAYLYQEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYG 578
Query: 106 SPEEINVIQNKTDVRRMSTSK-VTVLGYGLLTADAKTLIDALNNQNFKVVIVDESHYMKS 164
S EE I+ R + VT + ++D ++L L I DE H +K+
Sbjct: 579 SQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRL---KLNYAIFDEGHMLKN 635
Query: 165 RNATRSRILLPIVQKARRAILLTGTPALGRPEELFMQIEALFPQKFGRWTDYAKRYCNAH 224
+ R + L+ I A +LLTGTP EL + + P F T +R ++
Sbjct: 636 MGSIRYQHLMTI--NANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSK 693
Query: 225 IRYFGKRPQWDCRGASNLNELHQLLSDIMIRRLKTEVLTQLPPKVRQRIPFDLPSAAAKE 284
+ ++ ++ + Q++ ++RR+K EVL QLPPK + RI S ++
Sbjct: 694 TKSADEQSIYE---KERIAHAKQIIKPFILRRVKEEVLKQLPPK-KDRIELCAMSEKQEQ 749
Query: 285 LNTS-FEEWEK-IMRTPNSGAMETVMGLITRMFKQTAIAK----AGAVKDYIKMMLQN-- 336
L F +K I + M VM + +M + + A +K+ ++ML+
Sbjct: 750 LYLGLFNRLKKSINNLEKNTEMCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPT 809
Query: 337 ------------------------------------------DSLKFLVFAHHLSMLQAC 354
DS KF V LS L+
Sbjct: 810 HCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQK 869
Query: 355 TEAVI-----------------ENKTRYIRIDGSVSSSERIHLVNQFQKDPDTRVAILSI 397
+ V+ ++ RY+R+DG SERIHL+++F D D V +LS
Sbjct: 870 GDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLST 929
Query: 398 QAAGQGLTFTAASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWG 457
+A G G+ T+A+ V+ ++ +P + KQAEDR HR+GQ V + LI+ GT++ M
Sbjct: 930 KAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLK 989
Query: 458 MLNRKAQVTGSTLNGRKEKIQAEEGDK 484
+ +K ++ ++ +EGD+
Sbjct: 990 INQQKLKL-------EQDMTTVDEGDE 1009
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 148 bits (374), Expect = 2e-35
Identities = 161/679 (23%), Positives = 293/679 (43%), Gaps = 126/679 (18%)
Query: 51 RNGRCMVADEMGLGKTIQAIG-ITYFYKEEW---PLLIVVPSSLRYPWTEEIEKWIPELS 106
+N ++ADEMGLGKTIQ I ++Y + + P LIVVP S W E E W PE
Sbjct: 501 KNNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAPE-- 558
Query: 107 PEEINVIQNKTDVRRMST--------SKVTVLGYGLLTADAKTLID---ALNNQNFKVVI 155
INV+ D+ +T S+ L + L + L+ L + N+ +
Sbjct: 559 ---INVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLKDKTVLGSINWAFLG 615
Query: 156 VDESHYMKSRNATRSRILLPIVQKARRAILLTGTPALGRPEELFMQIEALFPQKFGRWTD 215
VDE+H +K+ ++ + L+ K+ +L+TGTP +EL+ + + P+KF W D
Sbjct: 616 VDEAHRLKNDDSLLYKTLIDF--KSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWED 673
Query: 216 YAKRYCNAHIRYFGKRPQWDCRGASNLNELHQLLSDIMIRRLKTEVLTQLPPKVRQRIPF 275
+ + + GK + + LH++L ++RR+K +V LP KV Q +
Sbjct: 674 FEEDH--------GKGRE------NGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRV 719
Query: 276 DLPSAAAKE-----LNTSFEEWEKIMRTPNSGAMETVMGLIT------------------ 312
++ SA K+ L +++ K R SG + VM L
Sbjct: 720 EM-SALQKQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENEREN 778
Query: 313 -RMFKQTAIAKAG--AVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRID 369
+ + I +G + D + L+ + L+F+ + ML E + + R+D
Sbjct: 779 GQEILLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLD 838
Query: 370 GSVSSSERIHLVNQFQKD-PDTRVAILSIQAAGQGLTFTAASHVVFAELYWDPGHIKQAE 428
GS+ R ++ F D + +LS +A G G+ +A VV + W+P + QA+
Sbjct: 839 GSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQ 898
Query: 429 DRAHRIGQCSSVNIHYLIANGTLD----------TLMWGMLNRKAQVTGSTL----NGRK 474
RAHRIGQ VNI+ L+ GT++ ++ ++ ++ TG T+ +GR
Sbjct: 899 ARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRTILENNSGRS 958
Query: 475 ----------------------EKIQAEEGDKEKWD---FLQFAEA---WTPNDSSEELR 506
++++ EE + ++ D L+ AE +++EL
Sbjct: 959 NSNPFNKEELTAILKFGAEDLFKELEGEESEPQEMDIDEILRLAETRENEVSTSATDELL 1018
Query: 507 KEALFTHFE--------KEKQHDIRSFFVPQPKKRQLMTSCDESKRFREENTVVSSDPTK 558
+ +F +E+ H +P+ +++++ +E ++ EE ++ +
Sbjct: 1019 SQFKVANFATMEDEEELEERPHKDWDEIIPEEQRKKVEE--EERQKELEEIYMLPRIRSS 1076
Query: 559 TAARDIIDYESDVEPETKRLKLAASEDHCSPSEETP-----SQSKQIRTPLVESVQEAKA 613
T D +SD E + + + +ASE S++ + + +R LVE +A+
Sbjct: 1077 TKKAQTNDSDSDTESKRQAQRSSASESETEDSDDDKKPKRRGRPRSVRKDLVEGFTDAEI 1136
Query: 614 QLTTPAF-----PVEGWQC 627
+ A+ P+E +C
Sbjct: 1137 RRFIKAYKKFGLPLERLEC 1155
>gi|148612870 chromodomain helicase DNA binding protein 1-like [Homo
sapiens]
Length = 897
Score = 137 bits (346), Expect = 4e-32
Identities = 130/473 (27%), Positives = 219/473 (46%), Gaps = 59/473 (12%)
Query: 37 LLPFQKDGIIFALKR----NGRCMVADEMGLGKTIQAIGITYFY----KEEWPLLIVVPS 88
L +Q +G+ + +R NG C++ DEMGLGKT Q I + + +E P LI+ P
Sbjct: 46 LRSYQLEGVNWLAQRFHCQNG-CILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCPL 104
Query: 89 SLRYPWTEEIEKWIPELS-------PEEINVIQNKTDVRRMSTSKVTVLGYGLLTADAKT 141
S+ W EE++++ P LS EE +Q D+++ S V + Y + DA
Sbjct: 105 SVLSNWKEEMQRFAPGLSCVTYAGDKEERACLQQ--DLKQESRFHVLLTTYEICLKDASF 162
Query: 142 LIDALNNQNFKVVIVDESHYMKSRNATRSRILLPIVQKARRAILLTGTPALGRPEELFMQ 201
L + + V++VDE+H +K++++ + L ++LLTGTP +EL+
Sbjct: 163 L----KSFPWSVLVVDEAHRLKNQSSLLHKTLSEF--SVVFSLLLTGTPIQNSLQELYSL 216
Query: 202 IEALFPQKFGRWT--DYAKRYCNAHIRYFGKRPQWDCRGASNLNELHQLLSDIMIRRLKT 259
+ + P F + D+ +RY + + + + +ELH+LL ++RR+K
Sbjct: 217 LSFVEPDLFSKEEVGDFIQRYQDIE------------KESESASELHKLLQPFLLRRVKA 264
Query: 260 EVLTQLPPKVRQRIPFDL--------PSAAAKELNTSFEEWEKIMRTPN--SGAMETV-- 307
EV T+LP K I + + K+L+ E K ++ N S + V
Sbjct: 265 EVATELPKKTEVVIYHGMSALQKKYYKAILMKDLDAFENETAKKVKLQNILSQLRKCVDH 324
Query: 308 ----MGLITRMFK----QTAIAKAGAVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVI 359
G+ F+ T + + D + L + + L+F+ ML + +
Sbjct: 325 PYLFDGVEPEPFEVGDHLTEASGKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMD 384
Query: 360 ENKTRYIRIDGSVSSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTAASHVVFAELYW 419
Y R+DGSV ER + F + P V +LS +A G G+ TAA V+F + +
Sbjct: 385 YRGYSYERVDGSVRGEERHLAIKNFGQQP-IFVFLLSTRAGGVGMNLTAADTVIFVDSDF 443
Query: 420 DPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNG 472
+P + QA RAHRIGQ SV + LI T++ +++ K Q+T + G
Sbjct: 444 NPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEG 496
>gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription
factor-associated, 170kDa [Homo sapiens]
Length = 1849
Score = 137 bits (345), Expect = 5e-32
Identities = 137/542 (25%), Positives = 225/542 (41%), Gaps = 92/542 (16%)
Query: 29 LPDRLRAKLLPFQKDGI---IFALKRNGRCMVADEMGLGKTIQAI----GITYFYKEEW- 80
+P + A+L +Q+DG+ F K ++ D+MGLGKT+Q+I G +E+
Sbjct: 1258 IPVPINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEYA 1317
Query: 81 ----------PLLIVVPSSLRYPWTEEIEKWIPELSPEEINVIQNKTDVRRMSTSKVTVL 130
P L+V P +L W +E+ K+ S E +N + + V
Sbjct: 1318 RSKLAECMPLPSLVVCPPTLTGHWVDEVGKFC---SREYLNPLHYTGPPTERIRLQHQVK 1374
Query: 131 GYGLLTADAKTL---IDALNNQNFKVVIVDESHYMKSRNATRSRILLPIVQKARRAILLT 187
+ L+ A + ID N F I+DE H +K+ S+ + + R I+L+
Sbjct: 1375 RHNLIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYR--IILS 1432
Query: 188 GTPALGRPEELFMQIEALFPQKFGRWTDYAKRYCNAHIRYFGKRP--QWDCRGASNLNEL 245
GTP EL+ + L P G +A RY + R + G ++ L
Sbjct: 1433 GTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDAL 1492
Query: 246 HQLLSDIMIRRLKTEVLTQLPPKVRQ-----------RIPFDLPSAAAK-------ELNT 287
H+ + ++RR+K +VL LPPK+ Q ++ D + AK T
Sbjct: 1493 HRQVLPFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSAT 1552
Query: 288 SFEEWEKIMRTPNSGAMETVMGLITRMFKQTAIAKAGAVKDYI----KMMLQNDSLKFLV 343
EE EK + +G + + + ++ A+ ++ K+ +QN SL +
Sbjct: 1553 LSEETEK-PKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKTTAEKLAVQNSSLHDIQ 1611
Query: 344 FAHHLSML---------------QACTEAVIEN--------------------------K 362
A LS L ++ TE+V+
Sbjct: 1612 HAPKLSALKQLLLDCGLGNGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPS 1671
Query: 363 TRYIRIDGSVSSSERIHLVNQFQKDPDTRVAILSIQAAGQGLTFTAASHVVFAELYWDPG 422
Y+R+DGS+ +R +V++F DP V +L+ G GL T A VVF E W+P
Sbjct: 1672 VTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPM 1731
Query: 423 HIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKIQAEEG 482
QA DRAHRIGQ VN++ LI GTL+ + G+ K + + ++ +Q+
Sbjct: 1732 RDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGT 1791
Query: 483 DK 484
D+
Sbjct: 1792 DQ 1793
>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
sapiens]
Length = 1710
Score = 136 bits (342), Expect = 1e-31
Identities = 115/440 (26%), Positives = 202/440 (45%), Gaps = 56/440 (12%)
Query: 51 RNGRCMVADEMGLGKTIQAIG-ITYFYKEEW---PLLIVVPSSLRYPWTEEIEKWIPELS 106
+ C++ADEMGLGKTIQ I + Y + E P L+VVP S W EI+ W +++
Sbjct: 498 KGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMN 557
Query: 107 PE----EINVIQNKTDVRRMSTSKVTVLGYGLLTADAKTLIDA---LNNQNFKVVIVDES 159
+IN +N + + L + +L + L+ L N+ + VDE+
Sbjct: 558 AVVYLGDINS-RNMIRTHEWTHHQTKRLKFNILLTTYEILLKDKAFLGGLNWAFIGVDEA 616
Query: 160 HYMKSRNATRSRILLPIVQKARRAILLTGTPALGRPEELFMQIEALFPQKFGRWTDYAKR 219
H +K+ ++ + L+ K+ +L+TGTP +EL+ + + P+KF W D+ +
Sbjct: 617 HRLKNDDSLLYKTLIDF--KSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEE 674
Query: 220 YCNAHIRYFGKRPQWDCRGASNLNELHQLLSDIMIRRLKTEVLTQLPPKVRQRIPFDLPS 279
+ GK ++ LH+ L ++RR+K +V LP KV Q + ++ S
Sbjct: 675 H--------GKGREY------GYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEM-S 719
Query: 280 AAAKE-----LNTSFEEWEKIMRTPNSGAMETVMGL-------------------ITRMF 315
A K+ L +++ K + SG + +M L +
Sbjct: 720 ALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEA 779
Query: 316 KQTAIAKAG--AVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVS 373
Q I +G + D + + L+ + L+F+ + ML E + + + R+DGS+
Sbjct: 780 LQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIK 839
Query: 374 SSERIHLVNQFQKD-PDTRVAILSIQAAGQGLTFTAASHVVFAELYWDPGHIKQAEDRAH 432
R ++ F + + +LS +A G G+ +A VV + W+P + QA+ RAH
Sbjct: 840 GELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAH 899
Query: 433 RIGQCSSVNIHYLIANGTLD 452
RIGQ VNI+ L+ G+++
Sbjct: 900 RIGQKKQVNIYRLVTKGSVE 919
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 134 bits (336), Expect = 6e-31
Identities = 143/546 (26%), Positives = 232/546 (42%), Gaps = 57/546 (10%)
Query: 56 MVADEMGLGKTIQAIG-ITYFYKEE---WPLLIVVPSSLRYPWTEEIEKWIPELSPEEIN 111
++ADEMGLGKTIQ I ITY + + P LI+VP S WT E +KW P +
Sbjct: 746 ILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYK 805
Query: 112 --VIQNKTDVRRMSTSKVTVL--GYGLLTADAKTLIDALNNQNFKVVIVDESHYMKSRNA 167
++ V ++ + K VL Y + D L +K +IVDE H MK+ +
Sbjct: 806 GTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHILAKI----RWKYMIVDEGHRMKNHHC 861
Query: 168 TRSRILLPIVQKARRAILLTGTPALGRPEELFMQIEALFPQKFGRWTDYAKRYCNAHIRY 227
+++L RR ILLTGTP + EL+ + L P F + + +++ NA
Sbjct: 862 KLTQVLNTHYVAPRR-ILLTGTPLQNKLPELWALLNFLLPTIFKSCSTF-EQWFNAPFAM 919
Query: 228 FGKRPQWDCRGASNL-NELHQLLSDIMIRRLKTEVLTQLPPKVRQRIPFDLPS------- 279
G+R + + LH++L ++RRLK EV +QLP KV I D+ +
Sbjct: 920 TGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYR 979
Query: 280 --AAAKELNTSFEEWEKIMRTPNSGAMETVMGL------------ITRMFKQTAIAKAGA 325
A L T E +K + M T+M L I F + G
Sbjct: 980 HMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGV 1039
Query: 326 VK--------------DYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGS 371
+ D I L+ + + L+F S++ + Y+R+DG+
Sbjct: 1040 INGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGT 1099
Query: 372 VSSSERIHLVNQFQKDPDTR--VAILSIQAAGQGLTFTAASHVVFAELYWDPGHIKQAED 429
S +R L+ +F +P ++ + +LS +A G GL AA VV + W+P QA+D
Sbjct: 1100 TKSEDRAALLKKF-NEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQD 1158
Query: 430 RAHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKIQAEEGDKEKWDF 489
RAHRIGQ + V + L +++ + K V + + + E+ F
Sbjct: 1159 RAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI--QAGMFDQKSSSHERRAF 1216
Query: 490 LQ-FAEAWTPNDSSEELRKEALFTHFEKEKQHDIRSFF-VPQPKKRQLMTSCDESKRFRE 547
LQ E N+ +E+ + ++ + F + ++R+ + R E
Sbjct: 1217 LQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLME 1276
Query: 548 ENTVVS 553
E+ + S
Sbjct: 1277 EDELPS 1282
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 134 bits (336), Expect = 6e-31
Identities = 143/546 (26%), Positives = 232/546 (42%), Gaps = 57/546 (10%)
Query: 56 MVADEMGLGKTIQAIG-ITYFYKEE---WPLLIVVPSSLRYPWTEEIEKWIPELSPEEIN 111
++ADEMGLGKTIQ I ITY + + P LI+VP S WT E +KW P +
Sbjct: 746 ILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYK 805
Query: 112 --VIQNKTDVRRMSTSKVTVL--GYGLLTADAKTLIDALNNQNFKVVIVDESHYMKSRNA 167
++ V ++ + K VL Y + D L +K +IVDE H MK+ +
Sbjct: 806 GTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHILAKI----RWKYMIVDEGHRMKNHHC 861
Query: 168 TRSRILLPIVQKARRAILLTGTPALGRPEELFMQIEALFPQKFGRWTDYAKRYCNAHIRY 227
+++L RR ILLTGTP + EL+ + L P F + + +++ NA
Sbjct: 862 KLTQVLNTHYVAPRR-ILLTGTPLQNKLPELWALLNFLLPTIFKSCSTF-EQWFNAPFAM 919
Query: 228 FGKRPQWDCRGASNL-NELHQLLSDIMIRRLKTEVLTQLPPKVRQRIPFDLPS------- 279
G+R + + LH++L ++RRLK EV +QLP KV I D+ +
Sbjct: 920 TGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYR 979
Query: 280 --AAAKELNTSFEEWEKIMRTPNSGAMETVMGL------------ITRMFKQTAIAKAGA 325
A L T E +K + M T+M L I F + G
Sbjct: 980 HMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGV 1039
Query: 326 VK--------------DYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGS 371
+ D I L+ + + L+F S++ + Y+R+DG+
Sbjct: 1040 INGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGT 1099
Query: 372 VSSSERIHLVNQFQKDPDTR--VAILSIQAAGQGLTFTAASHVVFAELYWDPGHIKQAED 429
S +R L+ +F +P ++ + +LS +A G GL AA VV + W+P QA+D
Sbjct: 1100 TKSEDRAALLKKF-NEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQD 1158
Query: 430 RAHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKIQAEEGDKEKWDF 489
RAHRIGQ + V + L +++ + K V + + + E+ F
Sbjct: 1159 RAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI--QAGMFDQKSSSHERRAF 1216
Query: 490 LQ-FAEAWTPNDSSEELRKEALFTHFEKEKQHDIRSFF-VPQPKKRQLMTSCDESKRFRE 547
LQ E N+ +E+ + ++ + F + ++R+ + R E
Sbjct: 1217 LQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLME 1276
Query: 548 ENTVVS 553
E+ + S
Sbjct: 1277 EDELPS 1282
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 130 bits (327), Expect = 7e-30
Identities = 129/500 (25%), Positives = 206/500 (41%), Gaps = 68/500 (13%)
Query: 36 KLLPFQKDGI---IFALKRNGRCMVADEMGLGKTIQAIGITY-FYKE--EWPLLIVVPSS 89
KL +Q +G+ +F C++ADEMGLGKTIQ+I Y Y + P L++ P S
Sbjct: 967 KLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFLYEIYLKGIHGPFLVIAPLS 1026
Query: 90 LRYPWTEEIEKWI---------PELSPEEINVIQNKTDVRRMSTSKVTVLGYGLLTADAK 140
W E W + S I + + + K + + ++T
Sbjct: 1027 TIPNWEREFRTWTELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEM 1086
Query: 141 TLIDA--LNNQNFKVVIVDESHYMKSRNATRSRILLPIVQKARRAILLTGTPALGRPEEL 198
L D L N ++ V++DE+H +K+RN L + +LLTGTP EEL
Sbjct: 1087 ILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLK--MMDLEHKVLLTGTPLQNTVEEL 1144
Query: 199 FMQIEALFPQKFGRWTDYAKRYCNAHIRYFGKRPQWDCRGASNLNELHQLLSDIMIRRLK 258
F + L P +F T + + + D + + +L +L +M+RRLK
Sbjct: 1145 FSLLHFLEPSRFPSETTFMQEF-------------GDLKTEEQVQKLQAILKPMMLRRLK 1191
Query: 259 TEVLTQLPPKVRQRIPFDLPSAAAKELNTSFEEWEKIMRTPNSGA-----METVMGL--- 310
+V L PK I +L + K E+ + A + T+M L
Sbjct: 1192 EDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKC 1251
Query: 311 -------------ITRMFKQT------------AIAKAG--AVKDYIKMMLQNDSLKFLV 343
I FK+T I AG + D + L+ + L+
Sbjct: 1252 CNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLI 1311
Query: 344 FAHHLSMLQACTEAVIENKTRYIRIDGSVSSSERIHLVNQFQK-DPDTRVAILSIQAAGQ 402
F+ + L + +I+ + Y RIDG V + R +++F K D D V +L +A G
Sbjct: 1312 FSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGL 1371
Query: 403 GLTFTAASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWGMLNRK 462
G+ TAA + + W+P + QA+ R HRIGQ SV I+ LI + + M+ + K
Sbjct: 1372 GINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLK 1431
Query: 463 AQVTGSTLNGRKEKIQAEEG 482
+ + L + A G
Sbjct: 1432 LGLDKAVLQSMSGRENATNG 1451
>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
[Homo sapiens]
Length = 2000
Score = 129 bits (325), Expect = 1e-29
Identities = 137/578 (23%), Positives = 228/578 (39%), Gaps = 78/578 (13%)
Query: 56 MVADEMGLGKTIQAIGITY-FYKE---EWPLLIVVPSSLRYPWTEEIEKWIP-------- 103
++ADEMGLGKTIQ I Y YKE + P L+ P S W E + W P
Sbjct: 758 ILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYT 817
Query: 104 ------------ELSPEEINVIQNKT--DVRRMSTSKVTVL--GYGLLTADAKTLIDALN 147
E S E+ + K ++R + K VL Y L+T D AL
Sbjct: 818 GDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQA----ALG 873
Query: 148 NQNFKVVIVDESHYMKSRNATRSRILLPIVQKARRAILLTGTPALGRPEELFMQIEALFP 207
+ + ++VDE+H +K+ + R+L K +LLTGTP EELF + L P
Sbjct: 874 SIRWACLVVDEAHRLKNNQSKFFRVLNGY--KIDHKLLLTGTPLQNNLEELFHLLNFLTP 931
Query: 208 QKFGRWTDYAKRYCNAHIRYFGKRPQWDCRGASNLNELHQLLSDIMIRRLKTEVLTQLPP 267
++F + + + D + +LH LL M+RRLK +V +P
Sbjct: 932 ERFNNLEGFLEEFA-------------DISKEDQIKKLHDLLGPHMLRRLKADVFKNMPA 978
Query: 268 KVRQRIPFDLPSAAAKE----LNTSFEEWEK---------------IMRTPNSGAMETVM 308
K + +L K L +FE + + N + V
Sbjct: 979 KTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVA 1038
Query: 309 GLITRMFKQTAIAKAGAVKDYIKMMLQNDSL--------KFLVFAHHLSMLQACTEAVIE 360
+ + A +K K+ML L + L+F+ ML + +
Sbjct: 1039 AMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDY 1098
Query: 361 NKTRYIRIDGSVSSSERIHLVNQFQKDPDTRVA-ILSIQAAGQGLTFTAASHVVFAELYW 419
+Y RIDG ++ + R +++F + +LS +A G G+ A V+ + W
Sbjct: 1099 EGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDW 1158
Query: 420 DPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKIQA 479
+P + QA RAHRIGQ + V I+ + +++ + + RK +T +
Sbjct: 1159 NPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAG 1218
Query: 480 EEGDKEKWDFLQFA--EAWTPNDSSEELRKEALFTHFEKEKQHDIRSFFVPQPKKRQLMT 537
+E D L+F E + + E +++ H++ E + + +
Sbjct: 1219 SMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQN 1278
Query: 538 SCDESKRFREENTVV-SSDPTKTAARDIIDYESDVEPE 574
+ F+ VV D + R+II E +V+P+
Sbjct: 1279 MNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPD 1316
>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
[Homo sapiens]
Length = 1966
Score = 129 bits (325), Expect = 1e-29
Identities = 137/578 (23%), Positives = 228/578 (39%), Gaps = 78/578 (13%)
Query: 56 MVADEMGLGKTIQAIGITY-FYKE---EWPLLIVVPSSLRYPWTEEIEKWIP-------- 103
++ADEMGLGKTIQ I Y YKE + P L+ P S W E + W P
Sbjct: 758 ILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYT 817
Query: 104 ------------ELSPEEINVIQNKT--DVRRMSTSKVTVL--GYGLLTADAKTLIDALN 147
E S E+ + K ++R + K VL Y L+T D AL
Sbjct: 818 GDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQA----ALG 873
Query: 148 NQNFKVVIVDESHYMKSRNATRSRILLPIVQKARRAILLTGTPALGRPEELFMQIEALFP 207
+ + ++VDE+H +K+ + R+L K +LLTGTP EELF + L P
Sbjct: 874 SIRWACLVVDEAHRLKNNQSKFFRVLNGY--KIDHKLLLTGTPLQNNLEELFHLLNFLTP 931
Query: 208 QKFGRWTDYAKRYCNAHIRYFGKRPQWDCRGASNLNELHQLLSDIMIRRLKTEVLTQLPP 267
++F + + + D + +LH LL M+RRLK +V +P
Sbjct: 932 ERFNNLEGFLEEFA-------------DISKEDQIKKLHDLLGPHMLRRLKADVFKNMPA 978
Query: 268 KVRQRIPFDLPSAAAKE----LNTSFEEWEK---------------IMRTPNSGAMETVM 308
K + +L K L +FE + + N + V
Sbjct: 979 KTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVA 1038
Query: 309 GLITRMFKQTAIAKAGAVKDYIKMMLQNDSL--------KFLVFAHHLSMLQACTEAVIE 360
+ + A +K K+ML L + L+F+ ML + +
Sbjct: 1039 AMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDY 1098
Query: 361 NKTRYIRIDGSVSSSERIHLVNQFQKDPDTRVA-ILSIQAAGQGLTFTAASHVVFAELYW 419
+Y RIDG ++ + R +++F + +LS +A G G+ A V+ + W
Sbjct: 1099 EGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDW 1158
Query: 420 DPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKIQA 479
+P + QA RAHRIGQ + V I+ + +++ + + RK +T +
Sbjct: 1159 NPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAG 1218
Query: 480 EEGDKEKWDFLQFA--EAWTPNDSSEELRKEALFTHFEKEKQHDIRSFFVPQPKKRQLMT 537
+E D L+F E + + E +++ H++ E + + +
Sbjct: 1219 SMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQN 1278
Query: 538 SCDESKRFREENTVV-SSDPTKTAARDIIDYESDVEPE 574
+ F+ VV D + R+II E +V+P+
Sbjct: 1279 MNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPD 1316
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 129 bits (325), Expect = 1e-29
Identities = 137/578 (23%), Positives = 228/578 (39%), Gaps = 78/578 (13%)
Query: 56 MVADEMGLGKTIQAIGITY-FYKE---EWPLLIVVPSSLRYPWTEEIEKWIP-------- 103
++ADEMGLGKTIQ I Y YKE + P L+ P S W E + W P
Sbjct: 817 ILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYT 876
Query: 104 ------------ELSPEEINVIQNKT--DVRRMSTSKVTVL--GYGLLTADAKTLIDALN 147
E S E+ + K ++R + K VL Y L+T D AL
Sbjct: 877 GDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQA----ALG 932
Query: 148 NQNFKVVIVDESHYMKSRNATRSRILLPIVQKARRAILLTGTPALGRPEELFMQIEALFP 207
+ + ++VDE+H +K+ + R+L K +LLTGTP EELF + L P
Sbjct: 933 SIRWACLVVDEAHRLKNNQSKFFRVLNGY--KIDHKLLLTGTPLQNNLEELFHLLNFLTP 990
Query: 208 QKFGRWTDYAKRYCNAHIRYFGKRPQWDCRGASNLNELHQLLSDIMIRRLKTEVLTQLPP 267
++F + + + D + +LH LL M+RRLK +V +P
Sbjct: 991 ERFNNLEGFLEEFA-------------DISKEDQIKKLHDLLGPHMLRRLKADVFKNMPA 1037
Query: 268 KVRQRIPFDLPSAAAKE----LNTSFEEWEK---------------IMRTPNSGAMETVM 308
K + +L K L +FE + + N + V
Sbjct: 1038 KTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVA 1097
Query: 309 GLITRMFKQTAIAKAGAVKDYIKMMLQNDSL--------KFLVFAHHLSMLQACTEAVIE 360
+ + A +K K+ML L + L+F+ ML + +
Sbjct: 1098 AMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDY 1157
Query: 361 NKTRYIRIDGSVSSSERIHLVNQFQKDPDTRVA-ILSIQAAGQGLTFTAASHVVFAELYW 419
+Y RIDG ++ + R +++F + +LS +A G G+ A V+ + W
Sbjct: 1158 EGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDW 1217
Query: 420 DPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKIQA 479
+P + QA RAHRIGQ + V I+ + +++ + + RK +T +
Sbjct: 1218 NPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAG 1277
Query: 480 EEGDKEKWDFLQFA--EAWTPNDSSEELRKEALFTHFEKEKQHDIRSFFVPQPKKRQLMT 537
+E D L+F E + + E +++ H++ E + + +
Sbjct: 1278 SMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQN 1337
Query: 538 SCDESKRFREENTVV-SSDPTKTAARDIIDYESDVEPE 574
+ F+ VV D + R+II E +V+P+
Sbjct: 1338 MNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPD 1375
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 129 bits (324), Expect = 1e-29
Identities = 138/513 (26%), Positives = 221/513 (43%), Gaps = 74/513 (14%)
Query: 56 MVADEMGLGKTIQAIG-ITYFYKEE---WPLLIVVPSSLRYPWTEEIEKWIPELSPEEI- 110
++ADEMGLGKTIQ I ITY + + P LI+VP S W E +KW P +
Sbjct: 776 ILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYK 835
Query: 111 -NVIQNKTDVRRMSTSKVTVL--GYGLLTADAKTLIDALNNQNFKVVIVDESHYMKSRNA 167
+ + V ++ + K VL Y + D L +K +IVDE H MK+ +
Sbjct: 836 GSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKI----RWKYMIVDEGHRMKNHHC 891
Query: 168 TRSRILLPIVQKARRAILLTGTPALGRPEELFMQIEALFPQKFGRWTDYAKRYCNAHIRY 227
+++L RR +LLTGTP + EL+ + L P F + + +++ NA
Sbjct: 892 KLTQVLNTHYVAPRR-LLLTGTPLQNKLPELWALLNFLLPTIFKSCSTF-EQWFNAPFAM 949
Query: 228 FGKRPQWDCRGASNL-NELHQLLSDIMIRRLKTEVLTQLPPKVRQRIPFDLPS------- 279
G++ + + LH++L ++RRLK EV QLP KV I D+ +
Sbjct: 950 TGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYR 1009
Query: 280 --AAAKELNTSFEEWEKIMRTPNSGAMETVMGL------------ITRMFKQTAIAKAGA 325
A L T E +K + M T+M L I F + G
Sbjct: 1010 HMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGI 1069
Query: 326 VK--------------DYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGS 371
V+ D I L+ + K L+F S++ + +Y+R+DG+
Sbjct: 1070 VQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGT 1129
Query: 372 VSSSERIHLVNQF-QKDPDTRVAILSIQAAGQGLTFTAASHVVFAELYWDPGHIKQAEDR 430
+ +R L+ F + + + +LS +A G GL +A V+ + W+P QA+DR
Sbjct: 1130 TKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDR 1189
Query: 431 AHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKIQAEEGDKEKWDFL 490
AHRIGQ + V + L +++ + K LN ++ IQA D++
Sbjct: 1190 AHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK-------LNVDQKVIQAGMFDQK----- 1237
Query: 491 QFAEAWTPNDSSEELRK--EALFTHFEKEKQHD 521
SS E R +A+ H E++++ D
Sbjct: 1238 ---------SSSHERRAFLQAILEHEEQDEEED 1261
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 129 bits (324), Expect = 1e-29
Identities = 138/513 (26%), Positives = 221/513 (43%), Gaps = 74/513 (14%)
Query: 56 MVADEMGLGKTIQAIG-ITYFYKEE---WPLLIVVPSSLRYPWTEEIEKWIPELSPEEI- 110
++ADEMGLGKTIQ I ITY + + P LI+VP S W E +KW P +
Sbjct: 776 ILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYK 835
Query: 111 -NVIQNKTDVRRMSTSKVTVL--GYGLLTADAKTLIDALNNQNFKVVIVDESHYMKSRNA 167
+ + V ++ + K VL Y + D L +K +IVDE H MK+ +
Sbjct: 836 GSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKI----RWKYMIVDEGHRMKNHHC 891
Query: 168 TRSRILLPIVQKARRAILLTGTPALGRPEELFMQIEALFPQKFGRWTDYAKRYCNAHIRY 227
+++L RR +LLTGTP + EL+ + L P F + + +++ NA
Sbjct: 892 KLTQVLNTHYVAPRR-LLLTGTPLQNKLPELWALLNFLLPTIFKSCSTF-EQWFNAPFAM 949
Query: 228 FGKRPQWDCRGASNL-NELHQLLSDIMIRRLKTEVLTQLPPKVRQRIPFDLPS------- 279
G++ + + LH++L ++RRLK EV QLP KV I D+ +
Sbjct: 950 TGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYR 1009
Query: 280 --AAAKELNTSFEEWEKIMRTPNSGAMETVMGL------------ITRMFKQTAIAKAGA 325
A L T E +K + M T+M L I F + G
Sbjct: 1010 HMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGI 1069
Query: 326 VK--------------DYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGS 371
V+ D I L+ + K L+F S++ + +Y+R+DG+
Sbjct: 1070 VQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGT 1129
Query: 372 VSSSERIHLVNQF-QKDPDTRVAILSIQAAGQGLTFTAASHVVFAELYWDPGHIKQAEDR 430
+ +R L+ F + + + +LS +A G GL +A V+ + W+P QA+DR
Sbjct: 1130 TKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDR 1189
Query: 431 AHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKIQAEEGDKEKWDFL 490
AHRIGQ + V + L +++ + K LN ++ IQA D++
Sbjct: 1190 AHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK-------LNVDQKVIQAGMFDQK----- 1237
Query: 491 QFAEAWTPNDSSEELRK--EALFTHFEKEKQHD 521
SS E R +A+ H E++++ D
Sbjct: 1238 ---------SSSHERRAFLQAILEHEEQDEEED 1261
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 129 bits (324), Expect = 1e-29
Identities = 138/513 (26%), Positives = 221/513 (43%), Gaps = 74/513 (14%)
Query: 56 MVADEMGLGKTIQAIG-ITYFYKEE---WPLLIVVPSSLRYPWTEEIEKWIPELSPEEI- 110
++ADEMGLGKTIQ I ITY + + P LI+VP S W E +KW P +
Sbjct: 776 ILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYK 835
Query: 111 -NVIQNKTDVRRMSTSKVTVL--GYGLLTADAKTLIDALNNQNFKVVIVDESHYMKSRNA 167
+ + V ++ + K VL Y + D L +K +IVDE H MK+ +
Sbjct: 836 GSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKI----RWKYMIVDEGHRMKNHHC 891
Query: 168 TRSRILLPIVQKARRAILLTGTPALGRPEELFMQIEALFPQKFGRWTDYAKRYCNAHIRY 227
+++L RR +LLTGTP + EL+ + L P F + + +++ NA
Sbjct: 892 KLTQVLNTHYVAPRR-LLLTGTPLQNKLPELWALLNFLLPTIFKSCSTF-EQWFNAPFAM 949
Query: 228 FGKRPQWDCRGASNL-NELHQLLSDIMIRRLKTEVLTQLPPKVRQRIPFDLPS------- 279
G++ + + LH++L ++RRLK EV QLP KV I D+ +
Sbjct: 950 TGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYR 1009
Query: 280 --AAAKELNTSFEEWEKIMRTPNSGAMETVMGL------------ITRMFKQTAIAKAGA 325
A L T E +K + M T+M L I F + G
Sbjct: 1010 HMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGI 1069
Query: 326 VK--------------DYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGS 371
V+ D I L+ + K L+F S++ + +Y+R+DG+
Sbjct: 1070 VQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGT 1129
Query: 372 VSSSERIHLVNQF-QKDPDTRVAILSIQAAGQGLTFTAASHVVFAELYWDPGHIKQAEDR 430
+ +R L+ F + + + +LS +A G GL +A V+ + W+P QA+DR
Sbjct: 1130 TKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDR 1189
Query: 431 AHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKIQAEEGDKEKWDFL 490
AHRIGQ + V + L +++ + K LN ++ IQA D++
Sbjct: 1190 AHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK-------LNVDQKVIQAGMFDQK----- 1237
Query: 491 QFAEAWTPNDSSEELRK--EALFTHFEKEKQHD 521
SS E R +A+ H E++++ D
Sbjct: 1238 ---------SSSHERRAFLQAILEHEEQDEEED 1261
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 129 bits (324), Expect = 1e-29
Identities = 138/513 (26%), Positives = 221/513 (43%), Gaps = 74/513 (14%)
Query: 56 MVADEMGLGKTIQAIG-ITYFYKEE---WPLLIVVPSSLRYPWTEEIEKWIPELSPEEI- 110
++ADEMGLGKTIQ I ITY + + P LI+VP S W E +KW P +
Sbjct: 776 ILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYK 835
Query: 111 -NVIQNKTDVRRMSTSKVTVL--GYGLLTADAKTLIDALNNQNFKVVIVDESHYMKSRNA 167
+ + V ++ + K VL Y + D L +K +IVDE H MK+ +
Sbjct: 836 GSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKI----RWKYMIVDEGHRMKNHHC 891
Query: 168 TRSRILLPIVQKARRAILLTGTPALGRPEELFMQIEALFPQKFGRWTDYAKRYCNAHIRY 227
+++L RR +LLTGTP + EL+ + L P F + + +++ NA
Sbjct: 892 KLTQVLNTHYVAPRR-LLLTGTPLQNKLPELWALLNFLLPTIFKSCSTF-EQWFNAPFAM 949
Query: 228 FGKRPQWDCRGASNL-NELHQLLSDIMIRRLKTEVLTQLPPKVRQRIPFDLPS------- 279
G++ + + LH++L ++RRLK EV QLP KV I D+ +
Sbjct: 950 TGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYR 1009
Query: 280 --AAAKELNTSFEEWEKIMRTPNSGAMETVMGL------------ITRMFKQTAIAKAGA 325
A L T E +K + M T+M L I F + G
Sbjct: 1010 HMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGI 1069
Query: 326 VK--------------DYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGS 371
V+ D I L+ + K L+F S++ + +Y+R+DG+
Sbjct: 1070 VQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGT 1129
Query: 372 VSSSERIHLVNQF-QKDPDTRVAILSIQAAGQGLTFTAASHVVFAELYWDPGHIKQAEDR 430
+ +R L+ F + + + +LS +A G GL +A V+ + W+P QA+DR
Sbjct: 1130 TKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDR 1189
Query: 431 AHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKIQAEEGDKEKWDFL 490
AHRIGQ + V + L +++ + K LN ++ IQA D++
Sbjct: 1190 AHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK-------LNVDQKVIQAGMFDQK----- 1237
Query: 491 QFAEAWTPNDSSEELRK--EALFTHFEKEKQHD 521
SS E R +A+ H E++++ D
Sbjct: 1238 ---------SSSHERRAFLQAILEHEEQDEEED 1261
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 128 bits (322), Expect = 3e-29
Identities = 139/513 (27%), Positives = 213/513 (41%), Gaps = 73/513 (14%)
Query: 56 MVADEMGLGKTIQAIG-ITYFYKEE---WPLLIVVPSSLRYPWTEEIEKWIPELSPEEI- 110
++ADEMGLGKTIQ I ITY + + P LI+VP S W E +KW P +
Sbjct: 776 ILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYK 835
Query: 111 -NVIQNKTDVRRMSTSKVTVL--GYGLLTADAKTLIDALNNQNFKVVIVDESHYMKSRNA 167
+ + V ++ + K VL Y + D L +K +IVDE H MK+ +
Sbjct: 836 GSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKI----RWKYMIVDEGHRMKNHHC 891
Query: 168 TRSRILLPIVQKARRAILLTGTPALGRPEELFMQIEALFPQKFGRWTDYAKRYCNAHIRY 227
+++L RR +LLTGTP + EL+ + L P F + + +++ NA
Sbjct: 892 KLTQVLNTHYVAPRR-LLLTGTPLQNKLPELWALLNFLLPTIFKSCSTF-EQWFNAPFAM 949
Query: 228 FGKRPQWDCRGASNL-NELHQLLSDIMIRRLKTEVLTQLPPKVRQRIPFDLPS------- 279
G++ + + LH++L ++RRLK EV QLP KV I D+ +
Sbjct: 950 TGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYR 1009
Query: 280 --AAAKELNTSFEEWEKIMRTPNSGAMETVMGL------------ITRMFKQTAIAKAGA 325
A L T E +K + M T+M L I F + G
Sbjct: 1010 HMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGI 1069
Query: 326 VK--------------DYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGS 371
V+ D I L+ + K L+F S++ + +Y+R+DG+
Sbjct: 1070 VQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGT 1129
Query: 372 VSSSERIHLVNQF-QKDPDTRVAILSIQAAGQGLTFTAASHVVFAELYWDPGHIKQAEDR 430
+ +R L+ F + + + +LS +A G GL +A V+ + W+P QA+DR
Sbjct: 1130 TKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDR 1189
Query: 431 AHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKIQAEEGDKEKWDFL 490
AHRIGQ + V + L T+N +EKI A K D
Sbjct: 1190 AHRIGQQNEVRVLRL----------------------CTVNSVEEKILAAAKYKLNVDQK 1227
Query: 491 QFAEAWTPNDSSEELRKEALFTHFEKEKQHDIR 523
SS R+ L E E+Q + R
Sbjct: 1228 VIQAGMFDQKSSSHERRAFLQAILEHEEQDESR 1260
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 128 bits (322), Expect = 3e-29
Identities = 139/513 (27%), Positives = 213/513 (41%), Gaps = 73/513 (14%)
Query: 56 MVADEMGLGKTIQAIG-ITYFYKEE---WPLLIVVPSSLRYPWTEEIEKWIPELSPEEI- 110
++ADEMGLGKTIQ I ITY + + P LI+VP S W E +KW P +
Sbjct: 776 ILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYK 835
Query: 111 -NVIQNKTDVRRMSTSKVTVL--GYGLLTADAKTLIDALNNQNFKVVIVDESHYMKSRNA 167
+ + V ++ + K VL Y + D L +K +IVDE H MK+ +
Sbjct: 836 GSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKI----RWKYMIVDEGHRMKNHHC 891
Query: 168 TRSRILLPIVQKARRAILLTGTPALGRPEELFMQIEALFPQKFGRWTDYAKRYCNAHIRY 227
+++L RR +LLTGTP + EL+ + L P F + + +++ NA
Sbjct: 892 KLTQVLNTHYVAPRR-LLLTGTPLQNKLPELWALLNFLLPTIFKSCSTF-EQWFNAPFAM 949
Query: 228 FGKRPQWDCRGASNL-NELHQLLSDIMIRRLKTEVLTQLPPKVRQRIPFDLPS------- 279
G++ + + LH++L ++RRLK EV QLP KV I D+ +
Sbjct: 950 TGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYR 1009
Query: 280 --AAAKELNTSFEEWEKIMRTPNSGAMETVMGL------------ITRMFKQTAIAKAGA 325
A L T E +K + M T+M L I F + G
Sbjct: 1010 HMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGI 1069
Query: 326 VK--------------DYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGS 371
V+ D I L+ + K L+F S++ + +Y+R+DG+
Sbjct: 1070 VQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGT 1129
Query: 372 VSSSERIHLVNQF-QKDPDTRVAILSIQAAGQGLTFTAASHVVFAELYWDPGHIKQAEDR 430
+ +R L+ F + + + +LS +A G GL +A V+ + W+P QA+DR
Sbjct: 1130 TKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDR 1189
Query: 431 AHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKIQAEEGDKEKWDFL 490
AHRIGQ + V + L T+N +EKI A K D
Sbjct: 1190 AHRIGQQNEVRVLRL----------------------CTVNSVEEKILAAAKYKLNVDQK 1227
Query: 491 QFAEAWTPNDSSEELRKEALFTHFEKEKQHDIR 523
SS R+ L E E+Q + R
Sbjct: 1228 VIQAGMFDQKSSSHERRAFLQAILEHEEQDESR 1260
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 128 bits (322), Expect = 3e-29
Identities = 139/513 (27%), Positives = 213/513 (41%), Gaps = 73/513 (14%)
Query: 56 MVADEMGLGKTIQAIG-ITYFYKEE---WPLLIVVPSSLRYPWTEEIEKWIPELSPEEI- 110
++ADEMGLGKTIQ I ITY + + P LI+VP S W E +KW P +
Sbjct: 776 ILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYK 835
Query: 111 -NVIQNKTDVRRMSTSKVTVL--GYGLLTADAKTLIDALNNQNFKVVIVDESHYMKSRNA 167
+ + V ++ + K VL Y + D L +K +IVDE H MK+ +
Sbjct: 836 GSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKI----RWKYMIVDEGHRMKNHHC 891
Query: 168 TRSRILLPIVQKARRAILLTGTPALGRPEELFMQIEALFPQKFGRWTDYAKRYCNAHIRY 227
+++L RR +LLTGTP + EL+ + L P F + + +++ NA
Sbjct: 892 KLTQVLNTHYVAPRR-LLLTGTPLQNKLPELWALLNFLLPTIFKSCSTF-EQWFNAPFAM 949
Query: 228 FGKRPQWDCRGASNL-NELHQLLSDIMIRRLKTEVLTQLPPKVRQRIPFDLPS------- 279
G++ + + LH++L ++RRLK EV QLP KV I D+ +
Sbjct: 950 TGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYR 1009
Query: 280 --AAAKELNTSFEEWEKIMRTPNSGAMETVMGL------------ITRMFKQTAIAKAGA 325
A L T E +K + M T+M L I F + G
Sbjct: 1010 HMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGI 1069
Query: 326 VK--------------DYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGS 371
V+ D I L+ + K L+F S++ + +Y+R+DG+
Sbjct: 1070 VQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGT 1129
Query: 372 VSSSERIHLVNQF-QKDPDTRVAILSIQAAGQGLTFTAASHVVFAELYWDPGHIKQAEDR 430
+ +R L+ F + + + +LS +A G GL +A V+ + W+P QA+DR
Sbjct: 1130 TKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDR 1189
Query: 431 AHRIGQCSSVNIHYLIANGTLDTLMWGMLNRKAQVTGSTLNGRKEKIQAEEGDKEKWDFL 490
AHRIGQ + V + L T+N +EKI A K D
Sbjct: 1190 AHRIGQQNEVRVLRL----------------------CTVNSVEEKILAAAKYKLNVDQK 1227
Query: 491 QFAEAWTPNDSSEELRKEALFTHFEKEKQHDIR 523
SS R+ L E E+Q + R
Sbjct: 1228 VIQAGMFDQKSSSHERRAFLQAILEHEEQDESR 1260
>gi|21071058 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a5 [Homo sapiens]
Length = 1052
Score = 128 bits (322), Expect = 3e-29
Identities = 122/462 (26%), Positives = 194/462 (41%), Gaps = 71/462 (15%)
Query: 36 KLLPFQKDGI--IFALKRNG-RCMVADEMGLGKTIQAIGITYFYKE----EWPLLIVVPS 88
KL +Q G+ + +L NG ++ADEMGLGKT+Q I + + K P +++VP
Sbjct: 179 KLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPK 238
Query: 89 SLRYPWTEEIEKWIPELSPEEINVIQNK-------TDVRRMSTSKVTVLGYGLLTADAKT 141
S + W E ++W+P L + +I +K DV V V Y +L +
Sbjct: 239 STLHNWMSEFKRWVPTL--RSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEK-- 294
Query: 142 LIDALNNQNFKVVIVDESHYMKSRNATRSRILLPIVQKARRAILLTGTPALGRPEELFMQ 201
N++ +++DE+H +K+ + S I+ K +LLTGTP EL+
Sbjct: 295 --SVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREF--KTTNRLLLTGTPLQNNLHELWSL 350
Query: 202 IEALFPQKFGRWTDYAKRYCNAHIRYFGKRPQWDCRGASNLNE-LHQLLSDIMIRRLKTE 260
+ L P F D+ + +C G L E LH +L ++RR+K +
Sbjct: 351 LNFLLPDVFNSADDFDSWFDTN-----------NCLGDQKLVERLHMVLRPFLLRRIKAD 399
Query: 261 VLTQLPPKVRQRI------------------PFDLPSAAAK----ELNTSFEEWEKIMRT 298
V LPPK +I D+ ++A K L + K
Sbjct: 400 VEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNH 459
Query: 299 PN--SGA-----METVMGLITRMFKQTAIAKAGAVKDYIKMMLQNDSLKFLVFAHHLSML 351
P GA T M L+T K V D + L+ + L+F+ +L
Sbjct: 460 PYLFDGAEPGPPYTTDMHLVTNSGKM-------VVLDKLLPKLKEQGSRVLIFSQMTRVL 512
Query: 352 QACTEAVIENKTRYIRIDGSVSSSERIHLVNQFQKDPDTR-VAILSIQAAGQGLTFTAAS 410
+ + Y R+DG ER +N + + T+ V +LS +A G G+ A
Sbjct: 513 DILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATAD 572
Query: 411 HVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLD 452
V+ + W+P QA DRAHRIGQ +V + I + T++
Sbjct: 573 VVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVE 614
>gi|114326455 chromodomain helicase DNA binding protein 8 [Homo
sapiens]
Length = 2302
Score = 127 bits (320), Expect = 4e-29
Identities = 128/482 (26%), Positives = 203/482 (42%), Gaps = 68/482 (14%)
Query: 34 RAKLLPFQKDGI---IFALKRNGRCMVADEMGLGKTIQAIGI---TYFYKEEWPLLIVVP 87
R +L +Q +G+ +F C++ADEMGLGKTIQ+I Y P L++ P
Sbjct: 529 RNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAP 588
Query: 88 SSLRYPWTEEIEKW------IPELSPEEINVIQNKTDVRRMSTSKVTVLGY---GLLTAD 138
S W E W + S +IQ + S ++ Y L+T
Sbjct: 589 LSTITNWEREFNTWTEMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTF 648
Query: 139 AKTLIDA--LNNQNFKVVIVDESHYMKSRNATRSRILLPIVQKARRAILLTGTPALGRPE 196
L D L ++ VI+DE+H +K+RN L + +LLTGTP E
Sbjct: 649 EMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHM--DLEHKVLLTGTPLQNTVE 706
Query: 197 ELFMQIEALFPQKFGRWTDYAKRYCNAHIRYFGKRPQWDCRGASNLNELHQLLSDIMIRR 256
ELF + L P +F +++ K + D + + +L +L +M+RR
Sbjct: 707 ELFSLLHFLEPSQFPSESEFLKDF-------------GDLKTEEQVQKLQAILKPMMLRR 753
Query: 257 LKTEVLTQLPPKVRQRIPFDLPSAAAK------ELNTSF-----------------EEWE 293
LK +V L PK I +L + K E N SF E
Sbjct: 754 LKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTNMPNLLNTMMELR 813
Query: 294 KIMRTPN--SGAMETVM-------GLITRMFKQTAIAKAG---AVKDYIKMMLQNDSLKF 341
K P +GA E ++ +I F A+ ++ + D + L+ K
Sbjct: 814 KCCNHPYLINGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKV 873
Query: 342 LVFAHHLSMLQACTEAVIENKTRYIRIDGSVSSSERIHLVNQFQK-DPDTRVAILSIQAA 400
L+F+ + L + +I+ + Y RIDG V + R +++F K D D V +L +A
Sbjct: 874 LIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAG 933
Query: 401 GQGLTFTAASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWGMLN 460
G G+ TAA + + W+P + QA+ R HRIGQ +V ++ LI + + M+ +
Sbjct: 934 GLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKAS 993
Query: 461 RK 462
K
Sbjct: 994 LK 995
>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
sapiens]
Length = 1954
Score = 127 bits (319), Expect = 6e-29
Identities = 125/493 (25%), Positives = 204/493 (41%), Gaps = 74/493 (15%)
Query: 31 DRLRAKLLPFQKDGII---FALKRNGRCMVADEMGLGKTIQAIGITY-FYKE---EWPLL 83
D L P+Q +G+ F+ + ++ADEMGLGKT+Q I Y YKE + P L
Sbjct: 694 DSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYL 753
Query: 84 IVVPSSLRYPWTEEIEKWIP--------------------ELSPEEINVIQNKTDVRRMS 123
+ P S W E E W P E S E+ N I++ V RM
Sbjct: 754 VSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFED-NAIRSGKKVFRMK 812
Query: 124 TSKVTVLGYGLLTADAKTLIDA--LNNQNFKVVIVDESHYMKSRNATRSRILLPIVQKAR 181
+V + + LLT+ ID L + + ++VDE+H +K+ + R+L K
Sbjct: 813 -KEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSY--KID 869
Query: 182 RAILLTGTPALGRPEELFMQIEALFPQKFGRWTDYAKRYCNAHIRYFGKRPQWDCRGASN 241
+LLTGTP EELF + L P++F + + + D
Sbjct: 870 YKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFA-------------DISKEDQ 916
Query: 242 LNELHQLLSDIMIRRLKTEVLTQLPPKVRQRIPFDLPSAAAKELNTSFEEWEKIMRTPNS 301
+ +LH LL M+RRLK +V +P K + +L K + + +
Sbjct: 917 IKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGG 976
Query: 302 GAMETVMGLITRMFK-------------QTAIAKAGA------VKDYIKMMLQNDSLK-- 340
G +++ ++ + K + + G+ VK K+ML LK
Sbjct: 977 GNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKL 1036
Query: 341 ------FLVFAHHLSMLQACTEAVIENKTRYIRIDGSVSSSERIHLVNQFQKDPDTRVA- 393
L+F+ ML + + +Y RIDG ++ R +++F +
Sbjct: 1037 RDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCF 1096
Query: 394 ILSIQAAGQGLTFTAASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDT 453
+LS +A G G+ A V+ + W+P + QA RAHRIGQ V I+ + +++
Sbjct: 1097 LLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEE 1156
Query: 454 LMWGMLNRKAQVT 466
+ + RK +T
Sbjct: 1157 RITQVAKRKMMLT 1169
>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
sapiens]
Length = 1912
Score = 124 bits (312), Expect = 4e-28
Identities = 132/609 (21%), Positives = 239/609 (39%), Gaps = 81/609 (13%)
Query: 31 DRLRAKLLPFQKDGII---FALKRNGRCMVADEMGLGKTIQAIGITY-FYKE---EWPLL 83
D L P+Q +G+ F+ + ++ADEMGLGKT+Q Y YKE + P L
Sbjct: 720 DATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFL 779
Query: 84 IVVPSSLRYPWTEEIEKWIPELSPE-------------------EINVIQNKTDVRRMST 124
+ P S W E E W P++ E N I+ RM
Sbjct: 780 VSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMK- 838
Query: 125 SKVTVLGYGLLTADAKTLIDA--LNNQNFKVVIVDESHYMKSRNATRSRILLPIVQKARR 182
+ +V + LLT+ ID L + ++ +IVDE+H +K+ + R+L +
Sbjct: 839 KEASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGY--SLQH 896
Query: 183 AILLTGTPALGRPEELFMQIEALFPQKFGRWTDYAKRYCNAHIRYFGKRPQWDCRGASNL 242
+LLTGTP EELF + L P++F + + + D +
Sbjct: 897 KLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFA-------------DIAKEDQI 943
Query: 243 NELHQLLSDIMIRRLKTEVLTQLPPKVRQRIPFDLPSAAAKELNTSFEEWEKIMRTPNSG 302
+LH +L M+RRLK +V +P K + +L K + + G
Sbjct: 944 KKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGG 1003
Query: 303 AMETVMGLI------------------------TRMFKQTAIAKAGAVKDYIKMMLQN-- 336
+++ ++ M+ +A+ +A ++ ML+N
Sbjct: 1004 NQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLK 1063
Query: 337 -DSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVSSSERIHLVNQFQKDPDTRVA-I 394
+ L+F+ ML + + +Y RIDG ++ + R +++F + +
Sbjct: 1064 EGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFL 1123
Query: 395 LSIQAAGQGLTFTAASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTL 454
LS +A G G+ A V+ + W+P + QA RAHRIGQ V I+ + +++
Sbjct: 1124 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEER 1183
Query: 455 MWGMLNRKAQVTGSTLNGRKEKIQAEEGDKEKWDFLQFA------EAWTPNDSSEELRKE 508
+ + +K +T + +E D L+F + T + ++
Sbjct: 1184 ITQVAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEATDGGGDNKEGED 1243
Query: 509 ALFTHFEKEKQHDIRSFFVPQPKKRQLMTSCDESKRFREENTVVSSD---PTKTAARDII 565
+ H++ + + + + +L + F+ VV + + R+II
Sbjct: 1244 SSVIHYDDKAIERLLDRNQDETEDTELQGMNEYLSSFKVAQYVVREEEMGEEEEVEREII 1303
Query: 566 DYESDVEPE 574
E V+P+
Sbjct: 1304 KQEESVDPD 1312
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 124 bits (312), Expect = 4e-28
Identities = 132/506 (26%), Positives = 212/506 (41%), Gaps = 87/506 (17%)
Query: 36 KLLPFQKDGI---IFALKRNGRCMVADEMGLGKTIQAIGITYFYKE-----EWPLLIVVP 87
+L +Q +G+ +F C++ADEMGLGKTIQ+I T+ Y+ P LI+ P
Sbjct: 859 QLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSI--TFLYEILLTGIRGPFLIIAP 916
Query: 88 SSLRYPWTEEIEKWIPELSPEEINV------------IQNKTDVRRMSTSKVTVLGY--- 132
S W E W +INV IQ R S ++ Y
Sbjct: 917 LSTIANWEREFRTWT------DINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQ 970
Query: 133 GLLTADAKTL--IDALNNQNFKVVIVDESHYMKSRNATRSRILLPIVQKARRAILLTGTP 190
++T L LN ++ VI+DE+H +K++N L + +LLTGTP
Sbjct: 971 AIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLK--LMNLEHKVLLTGTP 1028
Query: 191 ALGRPEELFMQIEALFPQKFGRWTDYAKRYCNAHIRYFGKRPQWDCRGASNLNELHQLLS 250
EELF + L P +F + + + + D + + +L +L
Sbjct: 1029 LQNTVEELFSLLHFLEPLRFPSESTFMQEF-------------GDLKTEEQVQKLQAILK 1075
Query: 251 DIMIRRLKTEVLTQLPPKVRQRIPFDLPSAAAK------ELNTSF--------------- 289
+M+RRLK +V +L PK I +L + K E N SF
Sbjct: 1076 PMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNLVN 1135
Query: 290 --EEWEKIMRTPN--SGAMETVMGLITRMFK--------QTAIAKAGAVKDYIKMM--LQ 335
E K P GA E ++G + Q I AG + K++ ++
Sbjct: 1136 TMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMK 1195
Query: 336 NDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVSSSERIHLVNQFQK-DPDTRVAI 394
K L+F+ + L + +I + Y RIDG V + R +++F K D D V +
Sbjct: 1196 AGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFL 1255
Query: 395 LSIQAAGQGLTFTAASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTL 454
L +A G G+ TAA + + W+P + QA+ R HRIGQ +V ++ L+ + +
Sbjct: 1256 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYERE 1315
Query: 455 MWGMLNRKAQVTGSTL---NGRKEKI 477
M+ + K + + L +GR+ +
Sbjct: 1316 MFDRASLKLGLDKAVLQSMSGRESNV 1341
>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
sapiens]
Length = 2715
Score = 122 bits (306), Expect = 2e-27
Identities = 132/498 (26%), Positives = 203/498 (40%), Gaps = 76/498 (15%)
Query: 36 KLLPFQKDG---IIFALKRNGRCMVADEMGLGKTIQAIGI---TYFYKEEWPLLIVVPSS 89
+L +Q +G ++F C++ADEMGLGKTIQ+I + P LI+ P S
Sbjct: 460 QLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFLRGIHGPFLIIAPLS 519
Query: 90 LRYPWTEEIEKW------IPELSPEEINVIQNKTDVRRMSTSK---------VTVLGYGL 134
W E W + S +IQ V R + V + + +
Sbjct: 520 TITNWEREFRTWTEMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEM 579
Query: 135 LTADAKTLIDALNNQNFKVVIVDESHYMKSRNATRSRILLPIVQKARRAILLTGTPALGR 194
+ AD L ++ VI+DE+H +K+RN L + +LLTGTP
Sbjct: 580 ILADC----PELKKIHWSCVIIDEAHRLKNRNCKLLEGLK--LMALEHKVLLTGTPLQNS 633
Query: 195 PEELFMQIEALFPQKFGRWTDYAKRYCNAHIRYFGKRPQWDCRGASNLNELHQLLSDIMI 254
EELF + L P +F T A + FG D + + +L +L +M+
Sbjct: 634 VEELFSLLNFLEPSQFPSET--------AFLEEFG-----DLKTEEQVKKLQSILKPMML 680
Query: 255 RRLKTEVLTQLPPKVRQRIPFDLPSAAAK------ELNTSF-----------------EE 291
RRLK +V L PK I +L + K E N SF E
Sbjct: 681 RRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGANQHNMPNLINTMME 740
Query: 292 WEKIMRTPN--SGAMETVMGLITRMFK--------QTAIAKAG--AVKDYIKMMLQNDSL 339
K P +GA E ++ + Q I AG + D + L
Sbjct: 741 LRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGH 800
Query: 340 KFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVSSSERIHLVNQFQK-DPDTRVAILSIQ 398
K L+F+ + L + +I+ + Y RIDG V + R +++F K D D V +L +
Sbjct: 801 KVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTR 860
Query: 399 AAGQGLTFTAASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYLIANGTLDTLMWGM 458
A G G+ TAA + + W+P + QA+ R HRIGQ +V ++ LI + + M+
Sbjct: 861 AGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDK 920
Query: 459 LNRKAQVTGSTLNGRKEK 476
+ K + + L K
Sbjct: 921 ASLKLGLDKAVLQDINRK 938
>gi|164419749 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform b [Homo sapiens]
Length = 1042
Score = 122 bits (305), Expect = 2e-27
Identities = 113/445 (25%), Positives = 195/445 (43%), Gaps = 59/445 (13%)
Query: 46 IFALKRNG-RCMVADEMGLGKTIQAIGITYFYKE----EWPLLIVVPSSLRYPWTEEIEK 100
+ +L NG ++ADEMGLGKT+Q I + + K P +++VP S + W E ++
Sbjct: 194 LISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKR 253
Query: 101 WIPELSPEEINVIQNKT-------DVRRMSTSKVTVLGYGLLTADAKTLIDALNNQNFKV 153
W+P L I + +K D V V Y ++ + +++
Sbjct: 254 WVPSL--RVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVF----KKFHWRY 307
Query: 154 VIVDESHYMKSRNATRSRILLPIVQKARRAILLTGTPALGRPEELFMQIEALFPQKFGRW 213
+++DE+H +K+ + S I+ K+ +LLTGTP EL+ + L P F
Sbjct: 308 LVIDEAHRIKNEKSKLSEIVREF--KSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSA 365
Query: 214 TDYAKRYCNAHIRYFGKRPQWDCRGASNLNE-LHQLLSDIMIRRLKTEVLTQLPPKVRQR 272
D+ +F + +C G L E LH +L ++RR+KT+V LPPK +
Sbjct: 366 DDFDS--------WFDTK---NCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIK 414
Query: 273 IPFDLPSAAAKELNTSFEEWEKIMRTPNSGAME--TVMGLITRMFK-------------- 316
I L S +E T + I +SG M+ ++ ++ ++ K
Sbjct: 415 IYLGL-SKMQREWYTKI-LMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG 472
Query: 317 ------QTAIAKAG--AVKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRI 368
+ ++ +G V D + L+ + L+F+ +L + + Y R+
Sbjct: 473 PPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532
Query: 369 DGSVSSSERIHLVNQFQKDPDTR-VAILSIQAAGQGLTFTAASHVVFAELYWDPGHIKQA 427
DG ER + F ++ + +LS +A G G+ +A V+ + W+P QA
Sbjct: 533 DGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQA 592
Query: 428 EDRAHRIGQCSSVNIHYLIANGTLD 452
DRAHRIGQ V + LI + T++
Sbjct: 593 MDRAHRIGQKKPVRVFRLITDNTVE 617
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.132 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,993,642
Number of Sequences: 37866
Number of extensions: 1855792
Number of successful extensions: 6261
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 5815
Number of HSP's gapped (non-prelim): 307
length of query: 1079
length of database: 18,247,518
effective HSP length: 113
effective length of query: 966
effective length of database: 13,968,660
effective search space: 13493725560
effective search space used: 13493725560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.