Guide to the Human Genome
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Search of human proteins with 62751417

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|62751417 RAB, member of RAS oncogene family-like 3 [Homo
sapiens]
         (236 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|62751417 RAB, member of RAS oncogene family-like 3 [Homo sapi...   478   e-135
gi|5803135 RAB35, member RAS oncogene family [Homo sapiens]            60   1e-09
gi|40255119 RAS and EF-hand domain containing [Homo sapiens]           59   5e-09
gi|4506363 RAB13, member RAS oncogene family [Homo sapiens]            58   6e-09
gi|222418791 EF-hand calcium binding domain 4B isoform a [Homo s...    57   1e-08
gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene fa...    57   2e-08
gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens]             57   2e-08
gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens]             57   2e-08
gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo sap...    56   3e-08
gi|13786129 RAB33B, member RAS oncogene family [Homo sapiens]          56   3e-08
gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens]           55   5e-08
gi|34485711 Ras-related protein Rab-27A [Homo sapiens]                 54   9e-08
gi|34485709 Ras-related protein Rab-27A [Homo sapiens]                 54   9e-08
gi|34485706 Ras-related protein Rab-27A [Homo sapiens]                 54   9e-08
gi|19923264 Ras-related protein Rab-27A [Homo sapiens]                 54   9e-08
gi|16933567 mel transforming oncogene [Homo sapiens]                   54   1e-07
gi|31795535 RAB36, member RAS oncogene family [Homo sapiens]           54   1e-07
gi|25188193 RAB39B, member RAS oncogene family [Homo sapiens]          54   2e-07
gi|28376635 RAB37, member RAS oncogene family isoform 3 [Homo sa...    54   2e-07
gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens]            54   2e-07
gi|208609962 RAB7, member RAS oncogene family-like 1 isoform 1 [...    54   2e-07
gi|4506375 RAB7, member RAS oncogene family-like 1 isoform 1 [Ho...    54   2e-07
gi|106507164 RAB12, member RAS oncogene family [Homo sapiens]          54   2e-07
gi|46361978 RAB26, member RAS oncogene family [Homo sapiens]           54   2e-07
gi|7549817 RAB, member of RAS oncogene family-like 2A [Homo sapi...    53   2e-07
gi|5902038 RAB, member of RAS oncogene family-like 2A [Homo sapi...    53   2e-07
gi|82659107 ras-related GTP-binding protein 4b [Homo sapiens]          53   2e-07
gi|39930371 RAB39, member RAS oncogene family [Homo sapiens]           53   2e-07
gi|4758996 Ras-related protein Rab-33A [Homo sapiens]                  52   3e-07
gi|19923483 GTPase Rab14 [Homo sapiens]                                52   4e-07

>gi|62751417 RAB, member of RAS oncogene family-like 3 [Homo
           sapiens]
          Length = 236

 Score =  478 bits (1231), Expect = e-135
 Identities = 236/236 (100%), Positives = 236/236 (100%)

Query: 1   MASLDRVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYKEGTPEEKTY 60
           MASLDRVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYKEGTPEEKTY
Sbjct: 1   MASLDRVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYKEGTPEEKTY 60

Query: 61  YIELWDVGGSVGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRWSLEALNRDLVP 120
           YIELWDVGGSVGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRWSLEALNRDLVP
Sbjct: 61  YIELWDVGGSVGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRWSLEALNRDLVP 120

Query: 121 TGVLVTNGDYDQEQFADNQIPLLVIGTKLDQIHETKRHEVLTRTAFLAEDFNPEEINLDC 180
           TGVLVTNGDYDQEQFADNQIPLLVIGTKLDQIHETKRHEVLTRTAFLAEDFNPEEINLDC
Sbjct: 121 TGVLVTNGDYDQEQFADNQIPLLVIGTKLDQIHETKRHEVLTRTAFLAEDFNPEEINLDC 180

Query: 181 TNPRYLAAGSSNAVKLSRFFDKVIEKRYFLREGNQIPGFPDRKRFGAGTLKSLHYD 236
           TNPRYLAAGSSNAVKLSRFFDKVIEKRYFLREGNQIPGFPDRKRFGAGTLKSLHYD
Sbjct: 181 TNPRYLAAGSSNAVKLSRFFDKVIEKRYFLREGNQIPGFPDRKRFGAGTLKSLHYD 236


>gi|5803135 RAB35, member RAS oncogene family [Homo sapiens]
          Length = 201

 Score = 60.5 bits (145), Expect = 1e-09
 Identities = 39/128 (30%), Positives = 70/128 (54%), Gaps = 11/128 (8%)

Query: 8   KVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYKEGTPEEKTYYIELWDV 67
           K+L++GDSGVGKSSL+     N   G+   T+G  VD ++   +    + K   +++WD 
Sbjct: 10  KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIG--VDFKIRTVEINGEKVK---LQIWDT 64

Query: 68  GGSVGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRWSLEALNRDLVPT-GVLVT 126
            G        ++  + +Y   +G+I V+D+T+ +S  N++RW L  +N++      +LV 
Sbjct: 65  AGQ----ERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRW-LHEINQNCDDVCRILVG 119

Query: 127 NGDYDQEQ 134
           N + D E+
Sbjct: 120 NKNDDPER 127


>gi|40255119 RAS and EF-hand domain containing [Homo sapiens]
          Length = 740

 Score = 58.5 bits (140), Expect = 5e-09
 Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 28/143 (19%)

Query: 8   KVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYKEGTPEEKTYYIELWDV 67
           K+++ GD+ VGKSS +  LC+N+   N S T+G  VD ++   K    + +   ++LWD 
Sbjct: 543 KIVLAGDAAVGKSSFLMRLCKNEFRENISATLG--VDFQM---KTLIVDGERTVLQLWDT 597

Query: 68  GGSVGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRWSLEALNRDLVPTGVLVTN 127
            G     S  KS    ++   +G++ ++D+T +KS  N+R W       D++        
Sbjct: 598 AGQERFRSIAKS----YFRKADGVLLLYDVTCEKSFLNIREWV------DMI-------- 639

Query: 128 GDYDQEQFADNQIPLLVIGTKLD 150
                E  A   +P++++G K D
Sbjct: 640 -----EDAAHETVPIMLVGNKAD 657


>gi|4506363 RAB13, member RAS oncogene family [Homo sapiens]
          Length = 203

 Score = 58.2 bits (139), Expect = 6e-09
 Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 9/102 (8%)

Query: 8   KVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYKEGTPEEKTYYIELWDV 67
           K+L++GDSGVGK+ L+    ++        T+G    +R  D      E K   +++WD 
Sbjct: 10  KLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDI-----EGKKIKLQVWDT 64

Query: 68  GGSVGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRW 109
            G        K+    +Y    GII V+D+T++KS +N++ W
Sbjct: 65  AGQ----ERFKTITTAYYRGAMGIILVYDITDEKSFENIQNW 102


>gi|222418791 EF-hand calcium binding domain 4B isoform a [Homo
           sapiens]
          Length = 731

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 28/147 (19%)

Query: 8   KVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYKEGTPEEKTYYIELWDV 67
           K++ +G+S VGK+S +   C+++     + TVG  +D RV   K    +     ++LWD 
Sbjct: 547 KIVFVGNSAVGKTSFLRRFCEDRFSPGMAATVG--IDYRV---KTLNVDNSQVALQLWDT 601

Query: 68  GGSVGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRWSLEALNRDLVPTGVLVTN 127
            G        +     F+   +G+I ++DLT+K+S  ++RRW                  
Sbjct: 602 AGQ----ERYRCITQQFFRKADGVIVMYDLTDKQSFLSVRRWLSSV-------------- 643

Query: 128 GDYDQEQFADNQIPLLVIGTKLDQIHE 154
                E+   +++P+L++G KLD   E
Sbjct: 644 -----EEAVGDRVPVLLLGNKLDNEKE 665


>gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene
           family [Homo sapiens]
          Length = 327

 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 8   KVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYKEGTPEEKTYYIELWDV 67
           K+L++GDSGVGK+ L+    ++        T+G    +R  D      E K   +++WD 
Sbjct: 134 KLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDI-----EGKKIKLQVWDT 188

Query: 68  GGSVGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRW 109
            G        K+    +Y    GII  +D+T++KS +N++ W
Sbjct: 189 AGQ----ERFKTITTAYYRGAMGIILAYDITDEKSFENIQNW 226


>gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens]
          Length = 327

 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 8   KVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYKEGTPEEKTYYIELWDV 67
           K+L++GDSGVGK+ L+    ++        T+G    +R  D      E K   +++WD 
Sbjct: 134 KLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDI-----EGKKIKLQVWDT 188

Query: 68  GGSVGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRW 109
            G        K+    +Y    GII  +D+T++KS +N++ W
Sbjct: 189 AGQ----ERFKTITTAYYRGAMGIILAYDITDEKSFENIQNW 226


>gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens]
          Length = 327

 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 8   KVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYKEGTPEEKTYYIELWDV 67
           K+L++GDSGVGK+ L+    ++        T+G    +R  D      E K   +++WD 
Sbjct: 134 KLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDI-----EGKKIKLQVWDT 188

Query: 68  GGSVGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRW 109
            G        K+    +Y    GII  +D+T++KS +N++ W
Sbjct: 189 AGQ----ERFKTITTAYYRGAMGIILAYDITDEKSFENIQNW 226


>gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo
           sapiens]
          Length = 205

 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 28/143 (19%)

Query: 8   KVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYKEGTPEEKTYYIELWDV 67
           K+L++GDSGVGKS L+     +    +   T+G    +R  +      + KT  +++WD 
Sbjct: 13  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-----DGKTIKLQIWDT 67

Query: 68  GGSVGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRWSLEALNRDLVPTGVLVTN 127
            G        ++  + +Y   +GII V+D+T+++S  N+++W  E               
Sbjct: 68  AGQ----ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI-------------- 109

Query: 128 GDYDQEQFADNQIPLLVIGTKLD 150
                +++A   +  L++G K D
Sbjct: 110 -----DRYASENVNKLLVGNKCD 127


>gi|13786129 RAB33B, member RAS oncogene family [Homo sapiens]
          Length = 229

 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 30/145 (20%)

Query: 8   KVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYKEGTPE--EKTYYIELW 65
           K++V+GDS VGK+ L +  C  +       T+G        D++E   E   +   I+LW
Sbjct: 35  KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGV-------DFRERAVEIDGERIKIQLW 87

Query: 66  DVGGSVGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRWSLEALNRDLVPTGVLV 125
           D   + G     KS    +Y +V+ ++FV+D+TN  S  +L  W  E             
Sbjct: 88  D---TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEEC------------ 132

Query: 126 TNGDYDQEQFADNQIPLLVIGTKLD 150
                 ++    N IP +++G K D
Sbjct: 133 ------KQHLLANDIPRILVGNKCD 151


>gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens]
          Length = 201

 Score = 55.1 bits (131), Expect = 5e-08
 Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 28/143 (19%)

Query: 8   KVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYKEGTPEEKTYYIELWDV 67
           K+L++GDSGVGKS L+     +    +   T+G    +R  +      + KT  +++WD 
Sbjct: 10  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-----DGKTIKLQIWDT 64

Query: 68  GGSVGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRWSLEALNRDLVPTGVLVTN 127
            G        ++  + +Y   +GII V+D+T+++S  N+++W  E               
Sbjct: 65  AGQ----ERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI-------------- 106

Query: 128 GDYDQEQFADNQIPLLVIGTKLD 150
                +++A   +  L++G K D
Sbjct: 107 -----DRYASENVNKLLVGNKSD 124


>gi|34485711 Ras-related protein Rab-27A [Homo sapiens]
          Length = 221

 Score = 54.3 bits (129), Expect = 9e-08
 Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 9/108 (8%)

Query: 7   VKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYKEGTPEEKT-----YY 61
           +K L LGDSGVGK+S+++     +       TVG     +   Y+   P+  T      +
Sbjct: 10  IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGATGRGQRIH 69

Query: 62  IELWDVGGSVGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRW 109
           ++LWD  G        +S    F+    G + + DLTN++S  N+R W
Sbjct: 70  LQLWDTAGQ----ERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNW 113


>gi|34485709 Ras-related protein Rab-27A [Homo sapiens]
          Length = 221

 Score = 54.3 bits (129), Expect = 9e-08
 Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 9/108 (8%)

Query: 7   VKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYKEGTPEEKT-----YY 61
           +K L LGDSGVGK+S+++     +       TVG     +   Y+   P+  T      +
Sbjct: 10  IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGATGRGQRIH 69

Query: 62  IELWDVGGSVGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRW 109
           ++LWD  G        +S    F+    G + + DLTN++S  N+R W
Sbjct: 70  LQLWDTAGQ----ERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNW 113


>gi|34485706 Ras-related protein Rab-27A [Homo sapiens]
          Length = 221

 Score = 54.3 bits (129), Expect = 9e-08
 Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 9/108 (8%)

Query: 7   VKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYKEGTPEEKT-----YY 61
           +K L LGDSGVGK+S+++     +       TVG     +   Y+   P+  T      +
Sbjct: 10  IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGATGRGQRIH 69

Query: 62  IELWDVGGSVGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRW 109
           ++LWD  G        +S    F+    G + + DLTN++S  N+R W
Sbjct: 70  LQLWDTAGQ----ERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNW 113


>gi|19923264 Ras-related protein Rab-27A [Homo sapiens]
          Length = 221

 Score = 54.3 bits (129), Expect = 9e-08
 Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 9/108 (8%)

Query: 7   VKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYKEGTPEEKT-----YY 61
           +K L LGDSGVGK+S+++     +       TVG     +   Y+   P+  T      +
Sbjct: 10  IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGATGRGQRIH 69

Query: 62  IELWDVGGSVGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRW 109
           ++LWD  G        +S    F+    G + + DLTN++S  N+R W
Sbjct: 70  LQLWDTAGQ----ERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNW 113


>gi|16933567 mel transforming oncogene [Homo sapiens]
          Length = 207

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 8   KVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYKEGTPEEKTYYIELWDV 67
           K+L++GDSGVGK+ ++    ++        T+G    +R  +      + K   +++WD 
Sbjct: 10  KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL-----DGKRIKLQIWDT 64

Query: 68  GGSVGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRW 109
            G        ++    +Y    GI+ V+D+TN+KS  N+R W
Sbjct: 65  AGQ----ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW 102


>gi|31795535 RAB36, member RAS oncogene family [Homo sapiens]
          Length = 333

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 11/111 (9%)

Query: 8   KVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYK-EGTPEEKTYYIELWD 66
           KV+V+GD  VGK+SL+H  C+N    +   T+G  VD  +  ++  G P    Y +++WD
Sbjct: 125 KVVVVGDLYVGKTSLIHRFCKNVFDRDYKATIG--VDFEIERFEIAGIP----YSLQIWD 178

Query: 67  VGGSVGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRWSLEALNRD 117
             G        K   + +Y     II   DLT+ ++ ++ R+W  +AL  +
Sbjct: 179 TAGQ----EKFKCIASAYYRGAQVIITAFDLTDVQTLEHTRQWLEDALREN 225


>gi|25188193 RAB39B, member RAS oncogene family [Homo sapiens]
          Length = 213

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 8/106 (7%)

Query: 4   LDRVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYKEGTPEEKTYYIE 63
           L + +++V+GDS VGKS L+    + +       TVG     R+ + + G    K   ++
Sbjct: 6   LYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPG----KRIKLQ 61

Query: 64  LWDVGGSVGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRW 109
           +WD  G     S    TRA + NSV G++ + D+TN++S QN+  W
Sbjct: 62  IWDTAGQERFRSI---TRAYYRNSVGGLL-LFDITNRRSFQNVHEW 103


>gi|28376635 RAB37, member RAS oncogene family isoform 3 [Homo
           sapiens]
          Length = 216

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 29/148 (19%)

Query: 8   KVLVLGDSGVGKSSLVHLLCQNQVL-GNPSWTVGCSVDVRVHDYKEGTPEEKTYYIELWD 66
           K +++GDSGVGK+SL+    Q + + G+ S TVG     +V      T +     +++WD
Sbjct: 24  KTILVGDSGVGKTSLLVQFDQGKFIPGSFSATVGIGFTNKVV-----TVDGVRVKLQIWD 78

Query: 67  VGGSVGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRWSLEALNRDLVPTGVLVT 126
             G        +S    +Y     ++ ++D+TNK S  N+R W  E              
Sbjct: 79  TAGQ----ERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEI------------- 121

Query: 127 NGDYDQEQFADNQIPLLVIGTKLDQIHE 154
                  ++A   + ++++G K D   E
Sbjct: 122 ------HEYAQRDVVIMLLGNKADMSSE 143


>gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens]
          Length = 207

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 30/164 (18%)

Query: 8   KVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYKEGTPEEKTYYIELWDV 67
           K+L++GDSGVGK+ L+    ++        T+G    +R  +      + K   +++WD 
Sbjct: 10  KLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIEL-----DGKKIKLQIWDT 64

Query: 68  GGSVGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRWSLEALNRDLVPTGVLVTN 127
            G        ++    +Y    GI+ V+D+TN+KS  N++ W                  
Sbjct: 65  AGQ----ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNI-------------- 106

Query: 128 GDYDQEQFADNQIPLLVIGTKLDQIHETKRHEVLTRTAFLAEDF 171
                E+ A + +  +++G K D     KR     R   LA D+
Sbjct: 107 -----EEHASSDVERMILGNKCDM--NDKRQVSKERGEKLAIDY 143


>gi|208609962 RAB7, member RAS oncogene family-like 1 isoform 1
           [Homo sapiens]
          Length = 203

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 9/123 (7%)

Query: 1   MASLDRV-KVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYKEGTPEEKT 59
           M S D + KVLV+GD+ VGK+SLV    Q+    +   TVG    ++V  +     + + 
Sbjct: 1   MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWS----DYEI 56

Query: 60  YYIELWDVGGSVGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRWSLEALNRDLV 119
             ++LWD+ G     S  +    ++Y   +  + + D+TN  +  N +RW  +  ++  +
Sbjct: 57  VRLQLWDIAGQERFTSMTR----LYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTL 112

Query: 120 PTG 122
           P G
Sbjct: 113 PNG 115


>gi|4506375 RAB7, member RAS oncogene family-like 1 isoform 1 [Homo
           sapiens]
          Length = 203

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 9/123 (7%)

Query: 1   MASLDRV-KVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYKEGTPEEKT 59
           M S D + KVLV+GD+ VGK+SLV    Q+    +   TVG    ++V  +     + + 
Sbjct: 1   MGSRDHLFKVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWS----DYEI 56

Query: 60  YYIELWDVGGSVGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRWSLEALNRDLV 119
             ++LWD+ G     S  +    ++Y   +  + + D+TN  +  N +RW  +  ++  +
Sbjct: 57  VRLQLWDIAGQERFTSMTR----LYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTL 112

Query: 120 PTG 122
           P G
Sbjct: 113 PNG 115


>gi|106507164 RAB12, member RAS oncogene family [Homo sapiens]
          Length = 244

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 45/200 (22%), Positives = 83/200 (41%), Gaps = 39/200 (19%)

Query: 6   RVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYKEGTPEEKTYYIELW 65
           +++V+++G  GVGK+SL+     +        TVG    ++  + +      K   +++W
Sbjct: 42  KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRG-----KKIRLQIW 96

Query: 66  DVGGSVGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRWSLEALNRDLVPTGVLV 125
           D  G         S  + +Y S  GII V+D+T K++  +L +W                
Sbjct: 97  DTAGQ----ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMI------------ 140

Query: 126 TNGDYDQEQFADNQIPLLVIGTKLDQIHETKRHEVLTRTAFLAEDFNPEEINLDCTNPRY 185
                  +++A     LL++G KLD   ET R   +TR          E+     T  R+
Sbjct: 141 -------DKYASEDAELLLVGNKLD--CETDRE--ITRQ-------QGEKFAQQITGMRF 182

Query: 186 LAAGSSNAVKLSRFFDKVIE 205
             A + +   +   F K+++
Sbjct: 183 CEASAKDNFNVDEIFLKLVD 202


>gi|46361978 RAB26, member RAS oncogene family [Homo sapiens]
          Length = 256

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 29/148 (19%)

Query: 8   KVLVLGDSGVGKSSLVHLLCQNQVL-GNPSWTVGCSVDVRVHDYKEGTPEEKTYYIELWD 66
           KV+++GDSGVGK+ L+        L G    TVG     +V D  +G   +    +++WD
Sbjct: 65  KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDV-DGVKVK----LQMWD 119

Query: 67  VGGSVGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRWSLEALNRDLVPTGVLVT 126
             G        +S    +Y   + ++ ++D+TNK S  N++ W  E              
Sbjct: 120 TAGQ----ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEI------------- 162

Query: 127 NGDYDQEQFADNQIPLLVIGTKLDQIHE 154
                  ++A + + L+++G K+D  HE
Sbjct: 163 ------HEYAQHDVALMLLGNKVDSAHE 184


>gi|7549817 RAB, member of RAS oncogene family-like 2A [Homo
           sapiens]
          Length = 228

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 44/158 (27%), Positives = 67/158 (42%), Gaps = 39/158 (24%)

Query: 5   DRVKVLVLGDSGVGKSSLVHLLC----QNQVLGNPSWTVGCSVDVRVHDYKE-GTPEEKT 59
           D VK++ LGDS VGKS L+        Q Q L   + T+          YK   T + KT
Sbjct: 20  DNVKIICLGDSAVGKSKLMERFLMDGFQPQQLSTYALTL----------YKHTATVDGKT 69

Query: 60  YYIELWDVGGSVGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRWSLEALNRDLV 119
             ++ WD  G        +S  A +Y+  +  I V D+  K + +NL  W  E   R+  
Sbjct: 70  ILVDFWDTAGQ----ERFQSMHASYYHKAHACIMVFDIQRKVTYRNLSTWYTEL--REFR 123

Query: 120 PTGVLVTNGDYDQEQFADNQIPLLVIGTKLDQIHETKR 157
           P                  +IP +V+  K+D I+ T++
Sbjct: 124 P------------------EIPCIVVANKIDDINVTQK 143


>gi|5902038 RAB, member of RAS oncogene family-like 2A [Homo
           sapiens]
          Length = 228

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 44/158 (27%), Positives = 67/158 (42%), Gaps = 39/158 (24%)

Query: 5   DRVKVLVLGDSGVGKSSLVHLLC----QNQVLGNPSWTVGCSVDVRVHDYKE-GTPEEKT 59
           D VK++ LGDS VGKS L+        Q Q L   + T+          YK   T + KT
Sbjct: 20  DNVKIICLGDSAVGKSKLMERFLMDGFQPQQLSTYALTL----------YKHTATVDGKT 69

Query: 60  YYIELWDVGGSVGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRWSLEALNRDLV 119
             ++ WD  G        +S  A +Y+  +  I V D+  K + +NL  W  E   R+  
Sbjct: 70  ILVDFWDTAGQ----ERFQSMHASYYHKAHACIMVFDIQRKVTYRNLSTWYTEL--REFR 123

Query: 120 PTGVLVTNGDYDQEQFADNQIPLLVIGTKLDQIHETKR 157
           P                  +IP +V+  K+D I+ T++
Sbjct: 124 P------------------EIPCIVVANKIDDINVTQK 143


>gi|82659107 ras-related GTP-binding protein 4b [Homo sapiens]
          Length = 213

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 11/118 (9%)

Query: 8   KVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYKEGTPEEKTYYIELWDV 67
           K LV+G +G GKS L+H   +N+   + + T+G     RV +        KT  +++WD 
Sbjct: 10  KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNV-----GGKTVKLQIWDT 64

Query: 68  GGSVGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRWSLEALNRDLVPTGVLV 125
            G     S  +S    +Y    G + V+D+T++++  +L  W  +A  R L    ++V
Sbjct: 65  AGQERFRSVTRS----YYRGAAGALLVYDITSRETYNSLAAWLTDA--RTLASPNIVV 116


>gi|39930371 RAB39, member RAS oncogene family [Homo sapiens]
          Length = 217

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 38/110 (34%), Positives = 61/110 (55%), Gaps = 12/110 (10%)

Query: 8   KVLVLGDSGVGKSSLVHLLCQNQVLG--NPSW--TVGCSVDVRVHDYKEGTPEEKTYYIE 63
           +++V+GDS VGKS L+H   Q +  G  +P+   TVG     R+ + + G    K   ++
Sbjct: 10  RLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEPG----KRIKLQ 65

Query: 64  LWDVGGSVGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRWSLEA 113
           LWD  G     S    TR+ + NSV G + V D+TN++S ++++ W  EA
Sbjct: 66  LWDTAGQERFRS---ITRSYYRNSVGGFL-VFDITNRRSFEHVKDWLEEA 111


>gi|4758996 Ras-related protein Rab-33A [Homo sapiens]
          Length = 237

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 13/115 (11%)

Query: 8   KVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYKEGTPE--EKTYYIELW 65
           K++V+GDS VGK+ L    C          T+G        D++E T E   +   +++W
Sbjct: 38  KIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGV-------DFREKTVEIEGEKIKVQVW 90

Query: 66  DVGGSVGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRWSLEALNRDLVP 120
           D   + G     KS    +Y +V+ ++FV+D+T   S  NL+ W ++  N   VP
Sbjct: 91  D---TAGQERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMW-IQECNGHAVP 141


>gi|19923483 GTPase Rab14 [Homo sapiens]
          Length = 215

 Score = 52.0 bits (123), Expect = 4e-07
 Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 9/130 (6%)

Query: 8   KVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDYKEGTPEEKTYYIELWDV 67
           K +++GD GVGKS L+H   + + + +   T+G     R+ +        +   +++WD 
Sbjct: 13  KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-----SGQKIKLQIWDT 67

Query: 68  GGSVGSASSVKSTRAVFYNSVNGIIFVHDLTNKKSSQNLRRWSLEALNRDLVPTGVLVTN 127
            G     +  +S    +Y    G + V+D+T + +  +L  W  +A N     T +++  
Sbjct: 68  AGQERFRAVTRS----YYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG 123

Query: 128 GDYDQEQFAD 137
              D E   D
Sbjct: 124 NKADLEAQRD 133


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,697,553
Number of Sequences: 37866
Number of extensions: 358938
Number of successful extensions: 1152
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 108
Number of HSP's that attempted gapping in prelim test: 984
Number of HSP's gapped (non-prelim): 185
length of query: 236
length of database: 18,247,518
effective HSP length: 99
effective length of query: 137
effective length of database: 14,498,784
effective search space: 1986333408
effective search space used: 1986333408
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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