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Search of human proteins with 62632771
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|62632771 N-methylpurine-DNA glycosylase isoform c [Homo
sapiens]
(281 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|62632771 N-methylpurine-DNA glycosylase isoform c [Homo sapiens] 572 e-163
gi|62632765 N-methylpurine-DNA glycosylase isoform b [Homo sapiens] 572 e-163
gi|62632769 N-methylpurine-DNA glycosylase isoform a [Homo sapiens] 572 e-163
gi|4503519 eukaryotic translation initiation factor 3, subunit 5... 35 0.056
gi|66392157 RGD motif, leucine rich repeats, tropomodulin domain... 35 0.056
gi|31377639 sialic acid binding Ig-like lectin 10 [Homo sapiens] 35 0.096
gi|29337296 melanoma antigen family D, 4B isoform 2 [Homo sapiens] 34 0.13
gi|29337294 melanoma antigen family D, 4B isoform 1 [Homo sapiens] 34 0.13
gi|29337292 melanoma antigen family D, 4B isoform 1 [Homo sapiens] 34 0.13
gi|149274614 melanoma antigen family D, 4 [Homo sapiens] 34 0.13
gi|150378549 tangerin [Homo sapiens] 34 0.16
gi|223468681 v-rel reticuloendotheliosis viral oncogene homolog ... 32 0.48
gi|223468676 v-rel reticuloendotheliosis viral oncogene homolog ... 32 0.48
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 32 0.81
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 31 1.4
gi|13994253 Golgi reassembly stacking protein 1 [Homo sapiens] 31 1.4
gi|38683851 round spermatid basic protein 1 [Homo sapiens] 31 1.4
gi|157743257 POU domain, class 6, transcription factor 2 [Homo s... 31 1.4
gi|115430245 arylhydrocarbon receptor repressor [Homo sapiens] 30 1.8
gi|239746684 PREDICTED: hypothetical protein XP_002343812 [Homo ... 30 1.8
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 30 1.8
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 30 1.8
gi|116812624 tau tubulin kinase 2 [Homo sapiens] 30 1.8
gi|157785645 SPEG complex locus [Homo sapiens] 30 1.8
gi|169168296 PREDICTED: hypothetical protein [Homo sapiens] 30 2.4
gi|169168044 PREDICTED: hypothetical protein [Homo sapiens] 30 2.4
gi|239745123 PREDICTED: hypothetical protein XP_002343373 [Homo ... 30 2.4
gi|169167512 PREDICTED: hypothetical protein [Homo sapiens] 30 2.4
gi|5729862 stem-loop (histone) binding protein [Homo sapiens] 30 2.4
gi|116268127 kinase non-catalytic C-lobe domain (KIND) containin... 30 2.4
>gi|62632771 N-methylpurine-DNA glycosylase isoform c [Homo sapiens]
Length = 281
Score = 572 bits (1475), Expect = e-163
Identities = 281/281 (100%), Positives = 281/281 (100%)
Query: 1 MGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFS 60
MGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFS
Sbjct: 1 MGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFS 60
Query: 61 SPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHS 120
SPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHS
Sbjct: 61 SPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHS 120
Query: 121 RGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVLLRALEPLEGLETMRQLR 180
RGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVLLRALEPLEGLETMRQLR
Sbjct: 121 RGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVLLRALEPLEGLETMRQLR 180
Query: 181 STLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEAVWLERGPLEPSEPAVV 240
STLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEAVWLERGPLEPSEPAVV
Sbjct: 181 STLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEAVWLERGPLEPSEPAVV 240
Query: 241 AAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA 281
AAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA
Sbjct: 241 AAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA 281
>gi|62632765 N-methylpurine-DNA glycosylase isoform b [Homo sapiens]
Length = 293
Score = 572 bits (1475), Expect = e-163
Identities = 281/281 (100%), Positives = 281/281 (100%)
Query: 1 MGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFS 60
MGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFS
Sbjct: 13 MGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFS 72
Query: 61 SPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHS 120
SPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHS
Sbjct: 73 SPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHS 132
Query: 121 RGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVLLRALEPLEGLETMRQLR 180
RGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVLLRALEPLEGLETMRQLR
Sbjct: 133 RGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVLLRALEPLEGLETMRQLR 192
Query: 181 STLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEAVWLERGPLEPSEPAVV 240
STLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEAVWLERGPLEPSEPAVV
Sbjct: 193 STLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEAVWLERGPLEPSEPAVV 252
Query: 241 AAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA 281
AAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA
Sbjct: 253 AAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA 293
>gi|62632769 N-methylpurine-DNA glycosylase isoform a [Homo sapiens]
Length = 298
Score = 572 bits (1475), Expect = e-163
Identities = 281/281 (100%), Positives = 281/281 (100%)
Query: 1 MGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFS 60
MGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFS
Sbjct: 18 MGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFS 77
Query: 61 SPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHS 120
SPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHS
Sbjct: 78 SPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHS 137
Query: 121 RGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVLLRALEPLEGLETMRQLR 180
RGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVLLRALEPLEGLETMRQLR
Sbjct: 138 RGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVLLRALEPLEGLETMRQLR 197
Query: 181 STLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEAVWLERGPLEPSEPAVV 240
STLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEAVWLERGPLEPSEPAVV
Sbjct: 198 STLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEAVWLERGPLEPSEPAVV 257
Query: 241 AAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA 281
AAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA
Sbjct: 258 AAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA 298
>gi|4503519 eukaryotic translation initiation factor 3, subunit 5
epsilon, 47kDa [Homo sapiens]
Length = 357
Score = 35.4 bits (80), Expect = 0.056
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 10/62 (16%)
Query: 8 PARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFSSPKGHLT 67
PA + P +++ A AP + P S+ AQ P P L P PGP+ P G +
Sbjct: 43 PASSSDPAAAAAATAAPGQTPASAQAPAQTPAP---ALPGPALPGPF-------PGGRVV 92
Query: 68 RL 69
RL
Sbjct: 93 RL 94
>gi|66392157 RGD motif, leucine rich repeats, tropomodulin domain and
proline-rich containing [Homo sapiens]
Length = 1435
Score = 35.4 bits (80), Expect = 0.056
Identities = 39/154 (25%), Positives = 54/154 (35%), Gaps = 36/154 (23%)
Query: 15 HSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFSSPKGHLTRLGLEFF 74
HS+++ A+ E DA P R P PGP P G L R+ L
Sbjct: 961 HSAAEEAEPEPELAAPGEDAEPQAGPSARGSPSPAAPGP--------PAGPLPRMDLPLA 1012
Query: 75 DQ------------------------PAVPLARAFLGQVLVRRLPNGTE--LRGRIVETE 108
Q P VP A G L R+ G E R+++ +
Sbjct: 1013 GQPLRHPTRARPRPRRQHHHRPPPGGPQVPPALPQEGNGLSARVDEGVEEFFSKRLIQQD 1072
Query: 109 AYLGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVY 142
PE++ A G TP R + K GTL+ +
Sbjct: 1073 RLWAPEEDPATEGGA--TPVPRTLRKKLGTLFAF 1104
>gi|31377639 sialic acid binding Ig-like lectin 10 [Homo sapiens]
Length = 697
Score = 34.7 bits (78), Expect = 0.096
Identities = 38/126 (30%), Positives = 51/126 (40%), Gaps = 26/126 (20%)
Query: 146 GMYFCMNISSQGDGACVL-LRALEPLEGLETM-----RQLRSTLRKGTASRVLKDRELCS 199
G Y C + G L L P E L M R + L GT+ VL+ + LC
Sbjct: 319 GRYTCRAENRLGSQQRALDLSVQYPPENLRVMVSQANRTVLENLGNGTSLPVLEGQSLC- 377
Query: 200 GPSKLCQALAINKSFDQRDLAQDEAVWLERG----PLEPSEPAVVAAARVGVGHAGEW-- 253
+ + S L+ W +RG P +PS+P V+ RV V H GE+
Sbjct: 378 -------LVCVTHSSPPARLS-----WTQRGQVLSPSQPSDPGVLELPRVQVEHEGEFTC 425
Query: 254 -ARKPL 258
AR PL
Sbjct: 426 HARHPL 431
>gi|29337296 melanoma antigen family D, 4B isoform 2 [Homo sapiens]
Length = 739
Score = 34.3 bits (77), Expect = 0.13
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 6 QRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTP--GPYRSIYFSSPK 63
+ PA + Q + S A +A E P S+ +QAPC RE P+T G F+ P
Sbjct: 183 EAPATSAQSQTGSPAQEAATEGPSSACAFSQAPCAREVDANRPSTAFLGQNDVFDFTQPA 242
Query: 64 G 64
G
Sbjct: 243 G 243
>gi|29337294 melanoma antigen family D, 4B isoform 1 [Homo sapiens]
Length = 741
Score = 34.3 bits (77), Expect = 0.13
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 6 QRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTP--GPYRSIYFSSPK 63
+ PA + Q + S A +A E P S+ +QAPC RE P+T G F+ P
Sbjct: 183 EAPATSAQSQTGSPAQEAATEGPSSACAFSQAPCAREVDANRPSTAFLGQNDVFDFTQPA 242
Query: 64 G 64
G
Sbjct: 243 G 243
>gi|29337292 melanoma antigen family D, 4B isoform 1 [Homo sapiens]
Length = 741
Score = 34.3 bits (77), Expect = 0.13
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 6 QRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTP--GPYRSIYFSSPK 63
+ PA + Q + S A +A E P S+ +QAPC RE P+T G F+ P
Sbjct: 183 EAPATSAQSQTGSPAQEAATEGPSSACAFSQAPCAREVDANRPSTAFLGQNDVFDFTQPA 242
Query: 64 G 64
G
Sbjct: 243 G 243
>gi|149274614 melanoma antigen family D, 4 [Homo sapiens]
Length = 739
Score = 34.3 bits (77), Expect = 0.13
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 6 QRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTP--GPYRSIYFSSPK 63
+ PA + Q + S A +A E P S+ +QAPC RE P+T G F+ P
Sbjct: 183 EAPATSAQSQTGSPAQEAATEGPSSACAFSQAPCAREVDANRPSTAFLGQNDVFDFTQPA 242
Query: 64 G 64
G
Sbjct: 243 G 243
>gi|150378549 tangerin [Homo sapiens]
Length = 1523
Score = 33.9 bits (76), Expect = 0.16
Identities = 39/146 (26%), Positives = 49/146 (33%), Gaps = 38/146 (26%)
Query: 5 KQRPARAGQPHSSSDAAQAPAEQ------PHSSSDAAQAPCPRERCLGPPTTPGPYRSIY 58
K+ RAG+ SS Q AEQ + A P RC G P P
Sbjct: 406 KRSGVRAGEAEESSAVCQVDAEQRSKVRHVDTKGPEATGVMPEARCRGTPEAP------- 458
Query: 59 FSSPKGHLTRLGLEFFDQ--------PAVPLARAFLGQVLVRRLPNGTELRGRIVETEAY 110
P+G RLG+ D+ PA P + GQ+ G + A
Sbjct: 459 ---PRGSQGRLGVRTRDEAPSGLSLPPAEPAGHS--GQL------------GDLEGARAA 501
Query: 111 LGPEDEAAHSRGGRQTPRNRGMFMKP 136
G E E A RGG G+ P
Sbjct: 502 AGQEREGAEVRGGAPGIEGTGLEQGP 527
>gi|223468681 v-rel reticuloendotheliosis viral oncogene homolog A
isoform 2 [Homo sapiens]
Length = 548
Score = 32.3 bits (72), Expect = 0.48
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 2 GQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFSS 61
GQ Q A A P A APA P S AQAP P P PGP +++ +
Sbjct: 368 GQISQASALAPAPPQVLPQAPAPAPAPAMVSALAQAPAP-----VPVLAPGPPQAVAPPA 422
Query: 62 PK 63
PK
Sbjct: 423 PK 424
>gi|223468676 v-rel reticuloendotheliosis viral oncogene homolog A
isoform 1 [Homo sapiens]
Length = 551
Score = 32.3 bits (72), Expect = 0.48
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 2 GQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFSS 61
GQ Q A A P A APA P S AQAP P P PGP +++ +
Sbjct: 371 GQISQASALAPAPPQVLPQAPAPAPAPAMVSALAQAPAP-----VPVLAPGPPQAVAPPA 425
Query: 62 PK 63
PK
Sbjct: 426 PK 427
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 31.6 bits (70), Expect = 0.81
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 21 AQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFSSP 62
A AP PH + APCP + P TTP P ++P
Sbjct: 549 ASAPLTTPHLETPPCPAPCPLQAPPSPLTTPPPETPSSIATP 590
Score = 30.8 bits (68), Expect = 1.4
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 10 RAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPG 52
RAG S+ +++ PA +P +S +AP + GP ++PG
Sbjct: 76 RAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPG 118
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 30.8 bits (68), Expect = 1.4
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 10 RAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPG 52
RAG S+ +++ PA +P +S +AP + GP ++PG
Sbjct: 76 RAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPG 118
>gi|13994253 Golgi reassembly stacking protein 1 [Homo sapiens]
Length = 440
Score = 30.8 bits (68), Expect = 1.4
Identities = 32/117 (27%), Positives = 41/117 (35%), Gaps = 32/117 (27%)
Query: 14 PHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFSSPKGHLTRLGLEF 73
P S S +A P PH Q P P +R + P G L G+
Sbjct: 272 PGSPSHSAPDPDGLPHFMETPLQPPPPVQRVMDP----------------GFLDVSGISL 315
Query: 74 FDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPED----EAAHSRGGRQT 126
D + + LP+ TEL V T GPED ++H RGG T
Sbjct: 316 LDNSNASVWPS---------LPSSTELTTTAVSTS---GPEDICSSSSSHERGGEAT 360
>gi|38683851 round spermatid basic protein 1 [Homo sapiens]
Length = 802
Score = 30.8 bits (68), Expect = 1.4
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 2 GQKKQRPARAG--QPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYF 59
G K+QR + +G Q + + P PH + Q P P PT PGP +
Sbjct: 84 GVKRQRRSSSGGSQEKRGRPSQEPPLAPPHRRRRSRQHPGPLPPTNAAPTVPGPVEPLLL 143
Query: 60 SSP 62
P
Sbjct: 144 PPP 146
>gi|157743257 POU domain, class 6, transcription factor 2 [Homo
sapiens]
Length = 691
Score = 30.8 bits (68), Expect = 1.4
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 8 PARAGQPHSSSDAAQAPA---EQPHSSSDAAQAPCPRERCLGPPTTP 51
PA P +S QAP QPHS S P P ++ PP P
Sbjct: 230 PASQQPPAPTSQLQQAPQPQQHQPHSHSQNQNQPSPTQQSSSPPQKP 276
>gi|115430245 arylhydrocarbon receptor repressor [Homo sapiens]
Length = 719
Score = 30.4 bits (67), Expect = 1.8
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 2 GQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFSS 61
G K P AG+ S D A+ P QP + + P PR CL P G +R+ S
Sbjct: 417 GPTKPLPWTAGK--HSEDGAR-PRLQPSKNDPPSLRPMPRGSCLPCPCVQGTFRNSPISH 473
Query: 62 P 62
P
Sbjct: 474 P 474
>gi|239746684 PREDICTED: hypothetical protein XP_002343812 [Homo
sapiens]
Length = 396
Score = 30.4 bits (67), Expect = 1.8
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 10 RAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGP 53
R G + +D + E+ H+ + P PR C GP PGP
Sbjct: 254 RPGLAMALADPLEVGPERRHAGGGSPVVPFPRRGCPGPAGGPGP 297
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sapiens]
Length = 2462
Score = 30.4 bits (67), Expect = 1.8
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 14 PHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFSSPKGHLTRLGLEF 73
P +++A + P + P +S PRE P P P S + +P GH LGL
Sbjct: 1024 PAFAAEAQKLPGDPPCWTSGLPFPVPPREVIKASPHAPDP--SAFSYAPPGHPLPLGLHD 1081
Query: 74 FDQPAVP 80
+P +P
Sbjct: 1082 TARPVLP 1088
>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sapiens]
Length = 2524
Score = 30.4 bits (67), Expect = 1.8
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 14 PHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFSSPKGHLTRLGLEF 73
P +++A + P + P +S PRE P P P S + +P GH LGL
Sbjct: 1040 PAFAAEAQKLPGDPPCWTSGLPFPVPPREVIKASPHAPDP--SAFSYAPPGHPLPLGLHD 1097
Query: 74 FDQPAVP 80
+P +P
Sbjct: 1098 TARPVLP 1104
>gi|116812624 tau tubulin kinase 2 [Homo sapiens]
Length = 1244
Score = 30.4 bits (67), Expect = 1.8
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 8 PARAGQPH-----SSSDAAQAPAEQPHSSSDAAQAPCPRERC 44
P+RAG+PH SS ++ + HS S +++ C +E C
Sbjct: 1168 PSRAGRPHHDQRSSSPHLGRSKSPPSHSGSSSSRRSCQQEHC 1209
>gi|157785645 SPEG complex locus [Homo sapiens]
Length = 3267
Score = 30.4 bits (67), Expect = 1.8
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 13 QPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGP 53
QP +S+A + PA+ P S S P PR +G + PGP
Sbjct: 287 QPQLASEAPRRPAQPPPSKSALLPPPSPR---VGKRSPPGP 324
>gi|169168296 PREDICTED: hypothetical protein [Homo sapiens]
Length = 359
Score = 30.0 bits (66), Expect = 2.4
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 7 RPARAGQPHSSSDAAQAPAEQ---PHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFSSPK 63
R A A P +A PA + P S Q+PC RE P TP RS Y P+
Sbjct: 234 RLASAQLPQGLPRSAGLPAREQPPPTQSRGRLQSPCAREASTSPALTP---RSQYPKRPQ 290
Query: 64 G 64
G
Sbjct: 291 G 291
>gi|169168044 PREDICTED: hypothetical protein [Homo sapiens]
Length = 359
Score = 30.0 bits (66), Expect = 2.4
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 7 RPARAGQPHSSSDAAQAPAEQ---PHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFSSPK 63
R A A P +A PA + P S Q+PC RE P TP RS Y P+
Sbjct: 234 RLASAQLPQGLPRSAGLPAREQPPPTQSRGRLQSPCAREASTSPALTP---RSQYPKRPQ 290
Query: 64 G 64
G
Sbjct: 291 G 291
>gi|239745123 PREDICTED: hypothetical protein XP_002343373 [Homo
sapiens]
Length = 205
Score = 30.0 bits (66), Expect = 2.4
Identities = 18/64 (28%), Positives = 24/64 (37%)
Query: 6 QRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFSSPKGH 65
Q+P R + A P S AQ PCPR + PP G + + F +
Sbjct: 51 QQPQRREGARLGLEPKPKAAVSPPSCRVPAQLPCPRPAAVFPPNWAGRFSAAGFRGARWQ 110
Query: 66 LTRL 69
L L
Sbjct: 111 LAAL 114
>gi|169167512 PREDICTED: hypothetical protein [Homo sapiens]
Length = 442
Score = 30.0 bits (66), Expect = 2.4
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 7 RPARAGQPHSSSDAAQAPAEQ---PHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFSSPK 63
R A A P +A PA + P S Q+PC RE P TP RS Y P+
Sbjct: 317 RLASAQLPQGLPRSAGLPAREQPPPTQSRGRLQSPCAREASTSPALTP---RSQYPKRPQ 373
Query: 64 G 64
G
Sbjct: 374 G 374
>gi|5729862 stem-loop (histone) binding protein [Homo sapiens]
Length = 270
Score = 30.0 bits (66), Expect = 2.4
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 1 MGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERC 44
+G+K++ R +P + +A AE+ S + P PR RC
Sbjct: 29 LGRKRRADGRRWRPEDAEEAEHRGAERRPESFTTPEGPKPRSRC 72
>gi|116268127 kinase non-catalytic C-lobe domain (KIND) containing 1
isoform a [Homo sapiens]
Length = 1749
Score = 30.0 bits (66), Expect = 2.4
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Query: 1 MGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAA---QAPCPRERCLGPPTTPGPYRSI 57
+G QR + G+P QAPA QP +S AA P P + P GP I
Sbjct: 746 LGASVQRDSAQGRP---CPPPQAPANQPEGASSAAPGSPVPAPPTKASALPVEQGPAEPI 802
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,668,668
Number of Sequences: 37866
Number of extensions: 672823
Number of successful extensions: 3108
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 3033
Number of HSP's gapped (non-prelim): 119
length of query: 281
length of database: 18,247,518
effective HSP length: 101
effective length of query: 180
effective length of database: 14,423,052
effective search space: 2596149360
effective search space used: 2596149360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.