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Search of human proteins with 62632769
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|62632769 N-methylpurine-DNA glycosylase isoform a [Homo
sapiens]
(298 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|62632769 N-methylpurine-DNA glycosylase isoform a [Homo sapiens] 607 e-174
gi|62632765 N-methylpurine-DNA glycosylase isoform b [Homo sapiens] 584 e-167
gi|62632771 N-methylpurine-DNA glycosylase isoform c [Homo sapiens] 572 e-163
gi|4503519 eukaryotic translation initiation factor 3, subunit 5... 35 0.061
gi|66392157 RGD motif, leucine rich repeats, tropomodulin domain... 35 0.061
gi|150378549 tangerin [Homo sapiens] 35 0.10
gi|31377639 sialic acid binding Ig-like lectin 10 [Homo sapiens] 35 0.10
gi|29337296 melanoma antigen family D, 4B isoform 2 [Homo sapiens] 34 0.14
gi|29337294 melanoma antigen family D, 4B isoform 1 [Homo sapiens] 34 0.14
gi|29337292 melanoma antigen family D, 4B isoform 1 [Homo sapiens] 34 0.14
gi|149274614 melanoma antigen family D, 4 [Homo sapiens] 34 0.14
gi|223468681 v-rel reticuloendotheliosis viral oncogene homolog ... 32 0.52
gi|223468676 v-rel reticuloendotheliosis viral oncogene homolog ... 32 0.52
gi|169215850 PREDICTED: transmembrane protein 46-like [Homo sapi... 32 0.68
gi|113429443 PREDICTED: transmembrane protein 46-like [Homo sapi... 32 0.68
gi|38683851 round spermatid basic protein 1 [Homo sapiens] 32 0.68
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 32 0.88
gi|21624641 calcium binding protein 4 [Homo sapiens] 31 1.2
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 31 1.5
gi|239753698 PREDICTED: hypothetical protein [Homo sapiens] 31 1.5
gi|239748278 PREDICTED: hypothetical protein [Homo sapiens] 31 1.5
gi|13994253 Golgi reassembly stacking protein 1 [Homo sapiens] 31 1.5
gi|157743257 POU domain, class 6, transcription factor 2 [Homo s... 31 1.5
gi|115430245 arylhydrocarbon receptor repressor [Homo sapiens] 30 2.0
gi|239746684 PREDICTED: hypothetical protein XP_002343812 [Homo ... 30 2.0
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 30 2.0
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 30 2.0
gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens] 30 2.0
gi|116812624 tau tubulin kinase 2 [Homo sapiens] 30 2.0
gi|157785645 SPEG complex locus [Homo sapiens] 30 2.0
>gi|62632769 N-methylpurine-DNA glycosylase isoform a [Homo sapiens]
Length = 298
Score = 607 bits (1566), Expect = e-174
Identities = 298/298 (100%), Positives = 298/298 (100%)
Query: 1 MVTPALQMKKPKQFCRRMGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRER 60
MVTPALQMKKPKQFCRRMGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRER
Sbjct: 1 MVTPALQMKKPKQFCRRMGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRER 60
Query: 61 CLGPPTTPGPYRSIYFSSPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGR 120
CLGPPTTPGPYRSIYFSSPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGR
Sbjct: 61 CLGPPTTPGPYRSIYFSSPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGR 120
Query: 121 IVETEAYLGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVL 180
IVETEAYLGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVL
Sbjct: 121 IVETEAYLGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVL 180
Query: 181 LRALEPLEGLETMRQLRSTLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDE 240
LRALEPLEGLETMRQLRSTLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDE
Sbjct: 181 LRALEPLEGLETMRQLRSTLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDE 240
Query: 241 AVWLERGPLEPSEPAVVAAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA 298
AVWLERGPLEPSEPAVVAAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA
Sbjct: 241 AVWLERGPLEPSEPAVVAAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA 298
>gi|62632765 N-methylpurine-DNA glycosylase isoform b [Homo sapiens]
Length = 293
Score = 584 bits (1505), Expect = e-167
Identities = 286/286 (100%), Positives = 286/286 (100%)
Query: 13 QFCRRMGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYR 72
QFCRRMGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYR
Sbjct: 8 QFCRRMGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYR 67
Query: 73 SIYFSSPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPED 132
SIYFSSPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPED
Sbjct: 68 SIYFSSPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPED 127
Query: 133 EAAHSRGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVLLRALEPLEGLET 192
EAAHSRGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVLLRALEPLEGLET
Sbjct: 128 EAAHSRGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVLLRALEPLEGLET 187
Query: 193 MRQLRSTLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEAVWLERGPLEPS 252
MRQLRSTLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEAVWLERGPLEPS
Sbjct: 188 MRQLRSTLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEAVWLERGPLEPS 247
Query: 253 EPAVVAAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA 298
EPAVVAAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA
Sbjct: 248 EPAVVAAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA 293
>gi|62632771 N-methylpurine-DNA glycosylase isoform c [Homo sapiens]
Length = 281
Score = 572 bits (1475), Expect = e-163
Identities = 281/281 (100%), Positives = 281/281 (100%)
Query: 18 MGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFS 77
MGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFS
Sbjct: 1 MGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFS 60
Query: 78 SPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHS 137
SPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHS
Sbjct: 61 SPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPEDEAAHS 120
Query: 138 RGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVLLRALEPLEGLETMRQLR 197
RGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVLLRALEPLEGLETMRQLR
Sbjct: 121 RGGRQTPRNRGMFMKPGTLYVYIIYGMYFCMNISSQGDGACVLLRALEPLEGLETMRQLR 180
Query: 198 STLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEAVWLERGPLEPSEPAVV 257
STLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEAVWLERGPLEPSEPAVV
Sbjct: 181 STLRKGTASRVLKDRELCSGPSKLCQALAINKSFDQRDLAQDEAVWLERGPLEPSEPAVV 240
Query: 258 AAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA 298
AAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA
Sbjct: 241 AAARVGVGHAGEWARKPLRFYVRGSPWVSVVDRVAEQDTQA 281
>gi|4503519 eukaryotic translation initiation factor 3, subunit 5
epsilon, 47kDa [Homo sapiens]
Length = 357
Score = 35.4 bits (80), Expect = 0.061
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 10/62 (16%)
Query: 25 PARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFSSPKGHLT 84
PA + P +++ A AP + P S+ AQ P P L P PGP+ P G +
Sbjct: 43 PASSSDPAAAAAATAAPGQTPASAQAPAQTPAP---ALPGPALPGPF-------PGGRVV 92
Query: 85 RL 86
RL
Sbjct: 93 RL 94
>gi|66392157 RGD motif, leucine rich repeats, tropomodulin domain and
proline-rich containing [Homo sapiens]
Length = 1435
Score = 35.4 bits (80), Expect = 0.061
Identities = 39/154 (25%), Positives = 54/154 (35%), Gaps = 36/154 (23%)
Query: 32 HSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFSSPKGHLTRLGLEFF 91
HS+++ A+ E DA P R P PGP P G L R+ L
Sbjct: 961 HSAAEEAEPEPELAAPGEDAEPQAGPSARGSPSPAAPGP--------PAGPLPRMDLPLA 1012
Query: 92 DQ------------------------PAVPLARAFLGQVLVRRLPNGTE--LRGRIVETE 125
Q P VP A G L R+ G E R+++ +
Sbjct: 1013 GQPLRHPTRARPRPRRQHHHRPPPGGPQVPPALPQEGNGLSARVDEGVEEFFSKRLIQQD 1072
Query: 126 AYLGPEDEAAHSRGGRQTPRNRGMFMKPGTLYVY 159
PE++ A G TP R + K GTL+ +
Sbjct: 1073 RLWAPEEDPATEGGA--TPVPRTLRKKLGTLFAF 1104
>gi|150378549 tangerin [Homo sapiens]
Length = 1523
Score = 34.7 bits (78), Expect = 0.10
Identities = 40/151 (26%), Positives = 50/151 (33%), Gaps = 38/151 (25%)
Query: 17 RMGQKKQRPARAGQPHSSSDAAQAPAEQ------PHSSSDAAQAPCPRERCLGPPTTPGP 70
R K+ RAG+ SS Q AEQ + A P RC G P P
Sbjct: 401 REANTKRSGVRAGEAEESSAVCQVDAEQRSKVRHVDTKGPEATGVMPEARCRGTPEAP-- 458
Query: 71 YRSIYFSSPKGHLTRLGLEFFDQ--------PAVPLARAFLGQVLVRRLPNGTELRGRIV 122
P+G RLG+ D+ PA P + GQ+ G +
Sbjct: 459 --------PRGSQGRLGVRTRDEAPSGLSLPPAEPAGHS--GQL------------GDLE 496
Query: 123 ETEAYLGPEDEAAHSRGGRQTPRNRGMFMKP 153
A G E E A RGG G+ P
Sbjct: 497 GARAAAGQEREGAEVRGGAPGIEGTGLEQGP 527
>gi|31377639 sialic acid binding Ig-like lectin 10 [Homo sapiens]
Length = 697
Score = 34.7 bits (78), Expect = 0.10
Identities = 38/126 (30%), Positives = 51/126 (40%), Gaps = 26/126 (20%)
Query: 163 GMYFCMNISSQGDGACVL-LRALEPLEGLETM-----RQLRSTLRKGTASRVLKDRELCS 216
G Y C + G L L P E L M R + L GT+ VL+ + LC
Sbjct: 319 GRYTCRAENRLGSQQRALDLSVQYPPENLRVMVSQANRTVLENLGNGTSLPVLEGQSLC- 377
Query: 217 GPSKLCQALAINKSFDQRDLAQDEAVWLERG----PLEPSEPAVVAAARVGVGHAGEW-- 270
+ + S L+ W +RG P +PS+P V+ RV V H GE+
Sbjct: 378 -------LVCVTHSSPPARLS-----WTQRGQVLSPSQPSDPGVLELPRVQVEHEGEFTC 425
Query: 271 -ARKPL 275
AR PL
Sbjct: 426 HARHPL 431
>gi|29337296 melanoma antigen family D, 4B isoform 2 [Homo sapiens]
Length = 739
Score = 34.3 bits (77), Expect = 0.14
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 23 QRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTP--GPYRSIYFSSPK 80
+ PA + Q + S A +A E P S+ +QAPC RE P+T G F+ P
Sbjct: 183 EAPATSAQSQTGSPAQEAATEGPSSACAFSQAPCAREVDANRPSTAFLGQNDVFDFTQPA 242
Query: 81 G 81
G
Sbjct: 243 G 243
>gi|29337294 melanoma antigen family D, 4B isoform 1 [Homo sapiens]
Length = 741
Score = 34.3 bits (77), Expect = 0.14
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 23 QRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTP--GPYRSIYFSSPK 80
+ PA + Q + S A +A E P S+ +QAPC RE P+T G F+ P
Sbjct: 183 EAPATSAQSQTGSPAQEAATEGPSSACAFSQAPCAREVDANRPSTAFLGQNDVFDFTQPA 242
Query: 81 G 81
G
Sbjct: 243 G 243
>gi|29337292 melanoma antigen family D, 4B isoform 1 [Homo sapiens]
Length = 741
Score = 34.3 bits (77), Expect = 0.14
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 23 QRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTP--GPYRSIYFSSPK 80
+ PA + Q + S A +A E P S+ +QAPC RE P+T G F+ P
Sbjct: 183 EAPATSAQSQTGSPAQEAATEGPSSACAFSQAPCAREVDANRPSTAFLGQNDVFDFTQPA 242
Query: 81 G 81
G
Sbjct: 243 G 243
>gi|149274614 melanoma antigen family D, 4 [Homo sapiens]
Length = 739
Score = 34.3 bits (77), Expect = 0.14
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 23 QRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTP--GPYRSIYFSSPK 80
+ PA + Q + S A +A E P S+ +QAPC RE P+T G F+ P
Sbjct: 183 EAPATSAQSQTGSPAQEAATEGPSSACAFSQAPCAREVDANRPSTAFLGQNDVFDFTQPA 242
Query: 81 G 81
G
Sbjct: 243 G 243
>gi|223468681 v-rel reticuloendotheliosis viral oncogene homolog A
isoform 2 [Homo sapiens]
Length = 548
Score = 32.3 bits (72), Expect = 0.52
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 19 GQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFSS 78
GQ Q A A P A APA P S AQAP P P PGP +++ +
Sbjct: 368 GQISQASALAPAPPQVLPQAPAPAPAPAMVSALAQAPAP-----VPVLAPGPPQAVAPPA 422
Query: 79 PK 80
PK
Sbjct: 423 PK 424
>gi|223468676 v-rel reticuloendotheliosis viral oncogene homolog A
isoform 1 [Homo sapiens]
Length = 551
Score = 32.3 bits (72), Expect = 0.52
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 19 GQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFSS 78
GQ Q A A P A APA P S AQAP P P PGP +++ +
Sbjct: 371 GQISQASALAPAPPQVLPQAPAPAPAPAMVSALAQAPAP-----VPVLAPGPPQAVAPPA 425
Query: 79 PK 80
PK
Sbjct: 426 PK 427
>gi|169215850 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 547
Score = 32.0 bits (71), Expect = 0.68
Identities = 24/75 (32%), Positives = 28/75 (37%), Gaps = 21/75 (28%)
Query: 11 PKQFCRRMGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERC------LGP 64
P+ FC+R PA P Q PA P S D P P + C P
Sbjct: 424 PRDFCQRF------PALEPSPR------QPPARAPRPSPDL---PAPLDACPWAPPVYAP 468
Query: 65 PTTPGPYRSIYFSSP 79
P PGPY + S P
Sbjct: 469 PAAPGPYAAWTSSRP 483
>gi|113429443 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 492
Score = 32.0 bits (71), Expect = 0.68
Identities = 24/75 (32%), Positives = 28/75 (37%), Gaps = 21/75 (28%)
Query: 11 PKQFCRRMGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERC------LGP 64
P+ FC+R PA P Q PA P S D P P + C P
Sbjct: 369 PRDFCQRF------PALEPSPR------QPPARAPRPSPDL---PAPLDACPWAPPVYAP 413
Query: 65 PTTPGPYRSIYFSSP 79
P PGPY + S P
Sbjct: 414 PAAPGPYAAWTSSRP 428
>gi|38683851 round spermatid basic protein 1 [Homo sapiens]
Length = 802
Score = 32.0 bits (71), Expect = 0.68
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 9 KKPKQFCRRMGQKKQRPARAG--QPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPT 66
+KP G K+QR + +G Q + + P PH + Q P P PT
Sbjct: 74 EKPHAGVSPRGVKRQRRSSSGGSQEKRGRPSQEPPLAPPHRRRRSRQHPGPLPPTNAAPT 133
Query: 67 TPGPYRSIYFSSP 79
PGP + P
Sbjct: 134 VPGPVEPLLLPPP 146
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 31.6 bits (70), Expect = 0.88
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 38 AQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFSSP 79
A AP PH + APCP + P TTP P ++P
Sbjct: 549 ASAPLTTPHLETPPCPAPCPLQAPPSPLTTPPPETPSSIATP 590
Score = 30.8 bits (68), Expect = 1.5
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 27 RAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPG 69
RAG S+ +++ PA +P +S +AP + GP ++PG
Sbjct: 76 RAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPG 118
>gi|21624641 calcium binding protein 4 [Homo sapiens]
Length = 275
Score = 31.2 bits (69), Expect = 1.2
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 1 MVTPALQMKKPKQFCRRMGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRER 60
+VTP ++P +R KK+R R + + S Q E P SS++ P E
Sbjct: 25 VVTPKSDAEEPPLTRKR--SKKERGLRGSRKRTGSSGEQTGPEAPGSSNN---PPSTGEG 79
Query: 61 CLG-PPTTPGPYRS 73
G PP +PGP S
Sbjct: 80 PAGAPPASPGPASS 93
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 30.8 bits (68), Expect = 1.5
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 27 RAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPG 69
RAG S+ +++ PA +P +S +AP + GP ++PG
Sbjct: 76 RAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPG 118
>gi|239753698 PREDICTED: hypothetical protein [Homo sapiens]
Length = 416
Score = 30.8 bits (68), Expect = 1.5
Identities = 36/142 (25%), Positives = 53/142 (37%), Gaps = 19/142 (13%)
Query: 5 ALQMKKPKQFCRRMGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGP 64
A+ P+ R +G ++ P AG+ + AA + S + + G
Sbjct: 104 AIPAHLPRSVQRVLGARRTEPRSAGERRRALPAAAGRKTKTWQSQNQSPRSARAPHTAGA 163
Query: 65 PTTPGPYRSIYFSSPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVET 124
PGP P+G + L FF P+VP L R P T+ R R VE+
Sbjct: 164 GPGPGP-------EPRGRRSHSPLGFF-SPSVPSR-----SPLPEREPERTDDRSR-VES 209
Query: 125 EAYLGPEDEAAHSRGGRQTPRN 146
A G + RG T R+
Sbjct: 210 SARAGDQ-----RRGREPTSRD 226
>gi|239748278 PREDICTED: hypothetical protein [Homo sapiens]
Length = 416
Score = 30.8 bits (68), Expect = 1.5
Identities = 36/142 (25%), Positives = 53/142 (37%), Gaps = 19/142 (13%)
Query: 5 ALQMKKPKQFCRRMGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGP 64
A+ P+ R +G ++ P AG+ + AA + S + + G
Sbjct: 104 AIPAHLPRSVQRVLGARRTEPRSAGERRRALPAAAGRKTKTWQSQNQSPRSARAPHTAGA 163
Query: 65 PTTPGPYRSIYFSSPKGHLTRLGLEFFDQPAVPLARAFLGQVLVRRLPNGTELRGRIVET 124
PGP P+G + L FF P+VP L R P T+ R R VE+
Sbjct: 164 GPGPGP-------EPRGRRSHSPLGFF-SPSVPSR-----SPLPEREPERTDDRSR-VES 209
Query: 125 EAYLGPEDEAAHSRGGRQTPRN 146
A G + RG T R+
Sbjct: 210 SARAGDQ-----RRGREPTSRD 226
>gi|13994253 Golgi reassembly stacking protein 1 [Homo sapiens]
Length = 440
Score = 30.8 bits (68), Expect = 1.5
Identities = 32/117 (27%), Positives = 41/117 (35%), Gaps = 32/117 (27%)
Query: 31 PHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFSSPKGHLTRLGLEF 90
P S S +A P PH Q P P +R + P G L G+
Sbjct: 272 PGSPSHSAPDPDGLPHFMETPLQPPPPVQRVMDP----------------GFLDVSGISL 315
Query: 91 FDQPAVPLARAFLGQVLVRRLPNGTELRGRIVETEAYLGPED----EAAHSRGGRQT 143
D + + LP+ TEL V T GPED ++H RGG T
Sbjct: 316 LDNSNASVWPS---------LPSSTELTTTAVSTS---GPEDICSSSSSHERGGEAT 360
>gi|157743257 POU domain, class 6, transcription factor 2 [Homo
sapiens]
Length = 691
Score = 30.8 bits (68), Expect = 1.5
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 25 PARAGQPHSSSDAAQAPA---EQPHSSSDAAQAPCPRERCLGPPTTP 68
PA P +S QAP QPHS S P P ++ PP P
Sbjct: 230 PASQQPPAPTSQLQQAPQPQQHQPHSHSQNQNQPSPTQQSSSPPQKP 276
>gi|115430245 arylhydrocarbon receptor repressor [Homo sapiens]
Length = 719
Score = 30.4 bits (67), Expect = 2.0
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 19 GQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFSS 78
G K P AG+ S D A+ P QP + + P PR CL P G +R+ S
Sbjct: 417 GPTKPLPWTAGK--HSEDGAR-PRLQPSKNDPPSLRPMPRGSCLPCPCVQGTFRNSPISH 473
Query: 79 P 79
P
Sbjct: 474 P 474
>gi|239746684 PREDICTED: hypothetical protein XP_002343812 [Homo
sapiens]
Length = 396
Score = 30.4 bits (67), Expect = 2.0
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 27 RAGQPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGP 70
R G + +D + E+ H+ + P PR C GP PGP
Sbjct: 254 RPGLAMALADPLEVGPERRHAGGGSPVVPFPRRGCPGPAGGPGP 297
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sapiens]
Length = 2462
Score = 30.4 bits (67), Expect = 2.0
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 31 PHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFSSPKGHLTRLGLEF 90
P +++A + P + P +S PRE P P P S + +P GH LGL
Sbjct: 1024 PAFAAEAQKLPGDPPCWTSGLPFPVPPREVIKASPHAPDP--SAFSYAPPGHPLPLGLHD 1081
Query: 91 FDQPAVP 97
+P +P
Sbjct: 1082 TARPVLP 1088
>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sapiens]
Length = 2524
Score = 30.4 bits (67), Expect = 2.0
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 31 PHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGPYRSIYFSSPKGHLTRLGLEF 90
P +++A + P + P +S PRE P P P S + +P GH LGL
Sbjct: 1040 PAFAAEAQKLPGDPPCWTSGLPFPVPPREVIKASPHAPDP--SAFSYAPPGHPLPLGLHD 1097
Query: 91 FDQPAVP 97
+P +P
Sbjct: 1098 TARPVLP 1104
>gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]
Length = 748
Score = 30.4 bits (67), Expect = 2.0
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 1 MVTPALQMKK---PKQFCRRMGQKKQRPARAGQPHSSSDAAQAPAEQPHSSSDAAQAPCP 57
MV P +Q+ + P GQ+ Q P P S P+ QP+S+ + AP P
Sbjct: 378 MVAPGVQVSQSSLPMLSSPSPGQQVQTPQSMPPPPQPSPQPGQPSSQPNSNVSSGPAPSP 437
Query: 58 RERCLGPPTTP 68
P P
Sbjct: 438 SSFLPSPSPQP 448
>gi|116812624 tau tubulin kinase 2 [Homo sapiens]
Length = 1244
Score = 30.4 bits (67), Expect = 2.0
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 25 PARAGQPH-----SSSDAAQAPAEQPHSSSDAAQAPCPRERC 61
P+RAG+PH SS ++ + HS S +++ C +E C
Sbjct: 1168 PSRAGRPHHDQRSSSPHLGRSKSPPSHSGSSSSRRSCQQEHC 1209
>gi|157785645 SPEG complex locus [Homo sapiens]
Length = 3267
Score = 30.4 bits (67), Expect = 2.0
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 30 QPHSSSDAAQAPAEQPHSSSDAAQAPCPRERCLGPPTTPGP 70
QP +S+A + PA+ P S S P PR +G + PGP
Sbjct: 287 QPQLASEAPRRPAQPPPSKSALLPPPSPR---VGKRSPPGP 324
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,391,755
Number of Sequences: 37866
Number of extensions: 712993
Number of successful extensions: 3395
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 3259
Number of HSP's gapped (non-prelim): 199
length of query: 298
length of database: 18,247,518
effective HSP length: 102
effective length of query: 196
effective length of database: 14,385,186
effective search space: 2819496456
effective search space used: 2819496456
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.