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Search of human proteins with 61966763
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|61966763 hypothetical protein LOC390667 [Homo sapiens]
(473 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|61966763 hypothetical protein LOC390667 [Homo sapiens] 959 0.0
gi|28195384 neuronal pentraxin II [Homo sapiens] 114 1e-25
gi|55770878 neuronal pentraxin I precursor [Homo sapiens] 109 5e-24
gi|148886654 polydom [Homo sapiens] 105 1e-22
gi|17402888 neuronal pentraxin receptor [Homo sapiens] 104 2e-22
gi|167900484 pentraxin 3 [Homo sapiens] 89 1e-17
gi|240120161 G protein-coupled receptor 144 [Homo sapiens] 81 2e-15
gi|4502133 serum amyloid P component precursor [Homo sapiens] 81 2e-15
gi|55770842 C-reactive protein, pentraxin-related [Homo sapiens] 79 7e-15
gi|169162308 PREDICTED: similar to hCG2036669 [Homo sapiens] 58 2e-08
gi|169161847 PREDICTED: similar to hCG2036669 [Homo sapiens] 58 2e-08
gi|169162681 PREDICTED: hypothetical protein LOC649458 [Homo sap... 58 2e-08
gi|29171753 PTPRF interacting protein alpha 1 isoform a [Homo sa... 50 6e-06
gi|4505983 PTPRF interacting protein alpha 1 isoform b [Homo sap... 50 6e-06
gi|194272142 myosin IXB isoform 2 [Homo sapiens] 47 5e-05
gi|33356170 myosin IXB isoform 1 [Homo sapiens] 47 5e-05
gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B ... 44 2e-04
gi|169171580 PREDICTED: hypothetical protein [Homo sapiens] 41 0.003
gi|113419324 PREDICTED: hypothetical protein [Homo sapiens] 41 0.003
gi|113418864 PREDICTED: hypothetical protein [Homo sapiens] 41 0.003
gi|239509076 PREDICTED: hypothetical protein [Homo sapiens] 41 0.003
gi|71361682 nuclear mitotic apparatus protein 1 [Homo sapiens] 41 0.003
gi|122937382 Fas (TNFRSF6) binding factor 1 [Homo sapiens] 41 0.003
gi|145386517 phostensin [Homo sapiens] 40 0.006
gi|199559805 phostensin [Homo sapiens] 40 0.006
gi|133922582 zinc finger protein 358 [Homo sapiens] 39 0.013
gi|29171755 PTPRF interacting protein alpha 2 [Homo sapiens] 38 0.017
gi|21735548 centrosomal protein 2 [Homo sapiens] 37 0.030
gi|194272140 dendrin [Homo sapiens] 37 0.030
gi|59710093 G-protein coupled receptor 112 [Homo sapiens] 37 0.030
>gi|61966763 hypothetical protein LOC390667 [Homo sapiens]
Length = 473
Score = 959 bits (2480), Expect = 0.0
Identities = 473/473 (100%), Positives = 473/473 (100%)
Query: 1 MGSGNWEVTGPPCGSRCERPPGLPRGVHGQFRSAVGLSGLRWFRRFQEVTWTHLQNIASN 60
MGSGNWEVTGPPCGSRCERPPGLPRGVHGQFRSAVGLSGLRWFRRFQEVTWTHLQNIASN
Sbjct: 1 MGSGNWEVTGPPCGSRCERPPGLPRGVHGQFRSAVGLSGLRWFRRFQEVTWTHLQNIASN 60
Query: 61 YNVSYNVDVRFRSLAEESQAVAQAVNRSQASVQGELAQLKAWVRKLQRRGRKVDTRLRAL 120
YNVSYNVDVRFRSLAEESQAVAQAVNRSQASVQGELAQLKAWVRKLQRRGRKVDTRLRAL
Sbjct: 61 YNVSYNVDVRFRSLAEESQAVAQAVNRSQASVQGELAQLKAWVRKLQRRGRKVDTRLRAL 120
Query: 121 DLTLGERSQQRARERKAHKAQRDALQDSLARLEGLVHSQGARLAALEGRLPVAHPGTAAL 180
DLTLGERSQQRARERKAHKAQRDALQDSLARLEGLVHSQGARLAALEGRLPVAHPGTAAL
Sbjct: 121 DLTLGERSQQRARERKAHKAQRDALQDSLARLEGLVHSQGARLAALEGRLPVAHPGTAAL 180
Query: 181 GPALVPTPTQPEELGPTSLKLQRDRQELRAASEHRGPPQDSSAPLQGRREPPASGSHRVL 240
GPALVPTPTQPEELGPTSLKLQRDRQELRAASEHRGPPQDSSAPLQGRREPPASGSHRVL
Sbjct: 181 GPALVPTPTQPEELGPTSLKLQRDRQELRAASEHRGPPQDSSAPLQGRREPPASGSHRVL 240
Query: 241 SGTAPKDPRQQAWSPQVPGEICGVGPTLVFPNASTRNVVFLSPGFVTALRALSFCSWVRT 300
SGTAPKDPRQQAWSPQVPGEICGVGPTLVFPNASTRNVVFLSPGFVTALRALSFCSWVRT
Sbjct: 241 SGTAPKDPRQQAWSPQVPGEICGVGPTLVFPNASTRNVVFLSPGFVTALRALSFCSWVRT 300
Query: 301 ASGRLGTLLSYATEDNDNKLVLHGRDSLLPGSIHFVIGDPAFRELPLQLLLDGQWHHICV 360
ASGRLGTLLSYATEDNDNKLVLHGRDSLLPGSIHFVIGDPAFRELPLQLLLDGQWHHICV
Sbjct: 301 ASGRLGTLLSYATEDNDNKLVLHGRDSLLPGSIHFVIGDPAFRELPLQLLLDGQWHHICV 360
Query: 361 IWTSTQGRYWLHVDRRLVATGSRFREGYEIPPGGSLVLGQEQDSVGGGFDSSEAFVGSMS 420
IWTSTQGRYWLHVDRRLVATGSRFREGYEIPPGGSLVLGQEQDSVGGGFDSSEAFVGSMS
Sbjct: 361 IWTSTQGRYWLHVDRRLVATGSRFREGYEIPPGGSLVLGQEQDSVGGGFDSSEAFVGSMS 420
Query: 421 GLAIWDRALVPGEVANLAIGKEFPTGAILTLANAALAGGFVQGANCTCLERCP 473
GLAIWDRALVPGEVANLAIGKEFPTGAILTLANAALAGGFVQGANCTCLERCP
Sbjct: 421 GLAIWDRALVPGEVANLAIGKEFPTGAILTLANAALAGGFVQGANCTCLERCP 473
>gi|28195384 neuronal pentraxin II [Homo sapiens]
Length = 431
Score = 114 bits (286), Expect = 1e-25
Identities = 73/186 (39%), Positives = 99/186 (53%), Gaps = 8/186 (4%)
Query: 289 LRALSFCSWVRT-ASGRLGTLLSYATEDNDNKLVLHGRDSLLPGSIHFVIGDPAFRELPL 347
L A + C W+R+ AS +GT SYA N++VL + I +I D +LPL
Sbjct: 247 LYAFTICLWLRSSASPGIGTPFSYAVPGQANEIVLIEWGN---NPIELLINDKV-AQLPL 302
Query: 348 QLLLDGQWHHICVIWTSTQGRYWLHVDRRLVATGSRFREGYEIPPGGSLVLGQEQDSVGG 407
+ DG+WHHICV WT+ G + D + TG + I PGG L+LGQEQD+VGG
Sbjct: 303 -FVSDGKWHHICVTWTTRDGMWEAFQDGEKLGTGENLAPWHPIKPGGVLILGQEQDTVGG 361
Query: 408 GFDSSEAFVGSMSGLAIWDRALVPGEVANLAIGKEFPTGAILTLA--NAALAGGFVQGAN 465
FD+++AFVG +S IWDR L E+ N+A G I+ N + GG +
Sbjct: 362 RFDATQAFVGELSQFNIWDRVLRAQEIVNIANCSTNMPGNIIPWVDNNVDVFGGASKWPV 421
Query: 466 CTCLER 471
TC ER
Sbjct: 422 ETCEER 427
>gi|55770878 neuronal pentraxin I precursor [Homo sapiens]
Length = 432
Score = 109 bits (273), Expect = 5e-24
Identities = 62/149 (41%), Positives = 88/149 (59%), Gaps = 6/149 (4%)
Query: 291 ALSFCSWVRT-ASGRLGTLLSYATEDNDNKLVLHGRDSLLPGSIHFVIGDPAFRELPLQL 349
A + C W+++ A+ +GT SYA N+LVL + + +I D + LP +
Sbjct: 252 AFTVCMWLKSSATPGVGTPFSYAVPGQANELVLIEWGN---NPMEILINDKVAK-LPF-V 306
Query: 350 LLDGQWHHICVIWTSTQGRYWLHVDRRLVATGSRFREGYEIPPGGSLVLGQEQDSVGGGF 409
+ DG+WHHICV WT+ G + + D +G + I P G LVLGQEQD++GGGF
Sbjct: 307 INDGKWHHICVTWTTRDGVWEAYQDGTQGGSGENLAPYHPIKPQGVLVLGQEQDTLGGGF 366
Query: 410 DSSEAFVGSMSGLAIWDRALVPGEVANLA 438
D+++AFVG ++ IWDR L PGEV NLA
Sbjct: 367 DATQAFVGELAHFNIWDRKLTPGEVYNLA 395
>gi|148886654 polydom [Homo sapiens]
Length = 3571
Score = 105 bits (261), Expect = 1e-22
Identities = 64/170 (37%), Positives = 97/170 (57%), Gaps = 10/170 (5%)
Query: 284 GFVTALRALSFCSWVRTASG-RLGTLLSYATED-NDNKLVLHGRDSLLPGSIHFVIGDPA 341
G + +L AL+ W++++ GT +SYA ++ +DN L+L + G + +V G
Sbjct: 1443 GMLPSLHALTCTFWMKSSDDMNYGTPISYAVDNGSDNTLLLTDYN----GWVLYVNGREK 1498
Query: 342 FRELPLQLLLDGQWHHICVIWTSTQGRYWLHVDRRLVATGSRFREGYEIPPGGSLVLGQE 401
P + DG+WHHI + WTS G + +++D +L G+ G IP GG+LVLGQE
Sbjct: 1499 ITNCPS--VNDGRWHHIAITWTSANGIWKVYIDGKLSDGGAGLSVGLPIPGGGALVLGQE 1556
Query: 402 QDSVGGGFDSSEAFVGSMSGLAIWDRALVPGEVANLAIG--KEFPTGAIL 449
QD G GF +E+FVGS+S L +WD L P +V +LA +E G +L
Sbjct: 1557 QDKKGEGFSPAESFVGSISQLNLWDYVLSPQQVKSLATSCPEELSKGNVL 1606
>gi|17402888 neuronal pentraxin receptor [Homo sapiens]
Length = 500
Score = 104 bits (259), Expect = 2e-22
Identities = 104/366 (28%), Positives = 156/366 (42%), Gaps = 48/366 (13%)
Query: 92 VQGELAQLKAWVRKLQRRGRKVDTRLRALDLTLGERSQQRARERKAHKAQRDALQDS--- 148
+Q QL+ + + R R +R L LG R + +RD + D
Sbjct: 126 LQSTAEQLRQTALQQEARIRADQDTIRELTGKLGRCESGLPRGLQGAGPRRDTMADGPWD 185
Query: 149 ----LARLEGLVHSQGARLAALEGRLPVAHPGTAALGP-ALVPTPTQPE------ELGPT 197
+ LE V + R+ LE LP +AA P + VPT + +L
Sbjct: 186 SPALILELEDAVRALRDRIDRLEQELPARVNLSAAPAPVSAVPTGLHSKMDQLEGQLLAQ 245
Query: 198 SLKLQRDRQELRAASEHRGPPQDSSAP-LQGRREPPASGSHRVLSGTAPKDPRQQAWSPQ 256
L L+++R L +S + + LQGR GS S +P D A+
Sbjct: 246 VLALEKERVALSHSSRRQRQEVEKELDVLQGRVAELEHGS----SAYSPPD----AFKIS 297
Query: 257 VPGEICGVGPTLVFPNASTRNVVFLSPGFVTALRALSFCSWVRTASGRLG--TLLSYATE 314
+P + N V P L A + C W+R+ S G T SY+
Sbjct: 298 IP----------IRNNYMYARVRKALP----ELYAFTACMWLRSRSSGTGQGTPFSYSVP 343
Query: 315 DNDNKLVL--HGRDSLLPGSIHFVIGDPAFRELPLQLLLDGQWHHICVIWTSTQGRYWLH 372
N++VL G + + +I D +LPL L D WHHIC+ WT+ G + +
Sbjct: 344 GQANEIVLLEAGHEPM-----ELLINDKV-AQLPLSLK-DNGWHHICIAWTTRDGLWSAY 396
Query: 373 VDRRLVATGSRFREGYEIPPGGSLVLGQEQDSVGGGFDSSEAFVGSMSGLAIWDRALVPG 432
D L +G + I P G L+LGQEQD++GG FD+++AFVG ++ +WD AL P
Sbjct: 397 QDGELQGSGENLAAWHPIKPHGILILGQEQDTLGGRFDATQAFVGDIAQFNLWDHALTPA 456
Query: 433 EVANLA 438
+V +A
Sbjct: 457 QVLGIA 462
>gi|167900484 pentraxin 3 [Homo sapiens]
Length = 381
Score = 88.6 bits (218), Expect = 1e-17
Identities = 95/316 (30%), Positives = 139/316 (43%), Gaps = 38/316 (12%)
Query: 126 ERSQQRARERKAHKAQRDALQDSLARLEGLVHSQGARLAALEGRLPVAHPGTAALGPALV 185
E SQ R ER +A D L+ L RL + RLA R P A PG PA
Sbjct: 64 ENSQMR--ERMLLQATDDVLRGELQRLR----EELGRLAESLAR-PCA-PGA----PAEA 111
Query: 186 PTPTQPEELGPTSLKLQRDRQELRAASEHRGPPQDS----SAPLQGRREPPASGSHRVLS 241
+ +EL + R + A R P+++ +A L+ R+ A H V
Sbjct: 112 RLTSALDELLQATRDAGRRLARMEGAEAQR--PEEAGRALAAVLEELRQTRAD-LHAVQG 168
Query: 242 GTAPKDPRQQAWSPQVPGEICGVGPTLVFPNASTRNVVFLSPGFVTALRALSFCSWVRTA 301
A ++W P G ++FP S + + P L + S C WV+
Sbjct: 169 WAA------RSWLP------AGCETAILFPMRSKKIFGSVHPVRPMRLESFSACIWVKAT 216
Query: 302 SGRLGTLL-SYATEDNDNKLVLHGRDSLLPGSIHFVIGDPAFRELPLQLLLDGQWHHICV 360
T+L SY T+ N ++ L+ L SI FV+G + + ++ G+W H+C
Sbjct: 217 DVLNKTILFSYGTKRNPYEIQLY----LSYQSIVFVVGGEENKLVAEAMVSLGRWTHLCG 272
Query: 361 IWTSTQGRYWLHVDRRLVATGSRFREGYEIPPGGSLVLGQEQDS--VGGGFDSSEAFVGS 418
W S +G L V+ L AT G+ +P GG L +GQE++ VGGGFD + AF G
Sbjct: 273 TWNSEEGLTSLWVNGELAATTVEMATGHIVPEGGILQIGQEKNGCCVGGGFDETLAFSGR 332
Query: 419 MSGLAIWDRALVPGEV 434
++G IWD L E+
Sbjct: 333 LTGFNIWDSVLSNEEI 348
>gi|240120161 G protein-coupled receptor 144 [Homo sapiens]
Length = 963
Score = 80.9 bits (198), Expect = 2e-15
Identities = 36/83 (43%), Positives = 49/83 (59%)
Query: 352 DGQWHHICVIWTSTQGRYWLHVDRRLVATGSRFREGYEIPPGGSLVLGQEQDSVGGGFDS 411
DG+WHH+C W GR+ L D R A G+ +P GG LVLGQ+QDS+GGGF
Sbjct: 205 DGRWHHVCATWEQRGGRWALFSDGRRRAGARGLGAGHPVPSGGILVLGQDQDSLGGGFSV 264
Query: 412 SEAFVGSMSGLAIWDRALVPGEV 434
A G+++ +W RAL P ++
Sbjct: 265 RHALSGNLTDFHLWARALSPAQL 287
>gi|4502133 serum amyloid P component precursor [Homo sapiens]
Length = 223
Score = 80.9 bits (198), Expect = 2e-15
Identities = 59/190 (31%), Positives = 86/190 (45%), Gaps = 18/190 (9%)
Query: 265 GPTLVFPNASTRNVVFLSPGFVTALRALSFCSWVRTASGRLGTLLSYATEDNDNKLVLH- 323
G VFP S + V L L+ + C + R +L SY T+ DN+L+++
Sbjct: 25 GKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYK 84
Query: 324 ---GRDSLLPGSIHFVIGDPAFRELPLQLLLDGQWHHICVIWTSTQG--RYWLHVDRRLV 378
G SL G + + P + HICV W S+ G +W++ LV
Sbjct: 85 ERVGEYSLYIG--RHKVTSKVIEKFPAPV-------HICVSWESSSGIAEFWIN-GTPLV 134
Query: 379 ATGSRFREGYEIPPGGSLVLGQEQDSVGGGFDSSEAFVGSMSGLAIWDRALVPGEVANLA 438
G R+GY + +VLGQEQDS GG FD S++FVG + L +WD L P + +
Sbjct: 135 KKG--LRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAY 192
Query: 439 IGKEFPTGAI 448
G P +
Sbjct: 193 QGTPLPANIL 202
>gi|55770842 C-reactive protein, pentraxin-related [Homo sapiens]
Length = 224
Score = 79.3 bits (194), Expect = 7e-15
Identities = 54/177 (30%), Positives = 84/177 (47%), Gaps = 8/177 (4%)
Query: 269 VFPNASTRNVVFLSPGFVTALRALSFCS--WVRTASGRLGTLLSYATEDNDNKLVLHGRD 326
VFP S + V L L+A + C + +S R ++ SYAT+ DN++++
Sbjct: 28 VFPKESDTSYVSLKAPLTKPLKAFTVCLHFYTELSSTRGYSIFSYATKRQDNEILIFWSK 87
Query: 327 SLLPGSIHFVIGDPAFRELPLQLLLDGQWHHICVIWTSTQGRYWLHVDRRLVATGSRFRE 386
+ G V G E+P + HIC W S G VD + S ++
Sbjct: 88 DI--GYSFTVGGSEILFEVPEVTVAPV---HICTSWESASGIVEFWVDGKPRVRKS-LKK 141
Query: 387 GYEIPPGGSLVLGQEQDSVGGGFDSSEAFVGSMSGLAIWDRALVPGEVANLAIGKEF 443
GY + S++LGQEQDS GG F+ S++ VG + + +WD L P E+ + +G F
Sbjct: 142 GYTVGAEASIILGQEQDSFGGNFEGSQSLVGDIGNVNMWDFVLSPDEINTIYLGGPF 198
>gi|169162308 PREDICTED: similar to hCG2036669 [Homo sapiens]
Length = 229
Score = 57.8 bits (138), Expect = 2e-08
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 357 HICVIWTSTQGRYWLHVDRRLVATGSRFREGYEIPPGGSLVLGQEQDSVGGGFDSSEAFV 416
H+ V W S G L + +LV ++ GY + ++LGQEQDS GG FD +++FV
Sbjct: 122 HVNVSWESASGIATLWANGKLVGRKGVWK-GYSVGEEAKIILGQEQDSFGGHFDENQSFV 180
Query: 417 GSMSGLAIWDRALVPGEVAN 436
G + + +WD L P E+ +
Sbjct: 181 GVIWDVFLWDHVLPPKEMCD 200
>gi|169161847 PREDICTED: similar to hCG2036669 [Homo sapiens]
Length = 229
Score = 57.8 bits (138), Expect = 2e-08
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 357 HICVIWTSTQGRYWLHVDRRLVATGSRFREGYEIPPGGSLVLGQEQDSVGGGFDSSEAFV 416
H+ V W S G L + +LV ++ GY + ++LGQEQDS GG FD +++FV
Sbjct: 122 HVNVSWESASGIATLWANGKLVGRKGVWK-GYSVGEEAKIILGQEQDSFGGHFDENQSFV 180
Query: 417 GSMSGLAIWDRALVPGEVAN 436
G + + +WD L P E+ +
Sbjct: 181 GVIWDVFLWDHVLPPKEMCD 200
>gi|169162681 PREDICTED: hypothetical protein LOC649458 [Homo
sapiens]
Length = 229
Score = 57.8 bits (138), Expect = 2e-08
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 357 HICVIWTSTQGRYWLHVDRRLVATGSRFREGYEIPPGGSLVLGQEQDSVGGGFDSSEAFV 416
H+ V W S G L + +LV ++ GY + ++LGQEQDS GG FD +++FV
Sbjct: 122 HVNVSWESASGIATLWANGKLVGRKGVWK-GYSVGEEAKIILGQEQDSFGGHFDENQSFV 180
Query: 417 GSMSGLAIWDRALVPGEVAN 436
G + + +WD L P E+ +
Sbjct: 181 GVIWDVFLWDHVLPPKEMCD 200
>gi|29171753 PTPRF interacting protein alpha 1 isoform a [Homo
sapiens]
Length = 1185
Score = 49.7 bits (117), Expect = 6e-06
Identities = 58/206 (28%), Positives = 95/206 (46%), Gaps = 23/206 (11%)
Query: 41 RWFRRFQEVTWTH-----LQN-IASNYNVSYNVDVRFRSLAEE----SQAVAQAVNRSQA 90
R+ +E T H L+N IA+ ++ + + R L E Q + Q + +++
Sbjct: 328 RYLAAQREATSVHDLNDKLENEIANKDSMHRQTEDKNRQLQERLELAEQKLQQTLRKAET 387
Query: 91 --SVQGELAQLKAWVRKLQRRGRKVDTRLRALDLTLGERSQ--QRARER-KAHKAQRDAL 145
V+ ELAQ A + K + R ++ RLR ++ L E++Q QRAR+R K ++ L
Sbjct: 388 LPEVEAELAQRVAALSKAEERHGNIEERLRQMEAQLEEKNQELQRARQREKMNEEHNKRL 447
Query: 146 QDSLARL-----EGLVHSQGARLAALEGRLPVAHPGTAALGPALVPTPTQPEE--LGPTS 198
D++ +L E L R+AALE + + +A L T ++ L +
Sbjct: 448 SDTVDKLLSESNERLQLHLKERMAALEDKNSLLREVESA-KKQLEETQHDKDQLVLNIEA 506
Query: 199 LKLQRDRQELRAASEHRGPPQDSSAP 224
L+ + D LR AS H G P S P
Sbjct: 507 LRAELDHMRLRGASLHHGRPHLGSVP 532
>gi|4505983 PTPRF interacting protein alpha 1 isoform b [Homo
sapiens]
Length = 1202
Score = 49.7 bits (117), Expect = 6e-06
Identities = 58/206 (28%), Positives = 95/206 (46%), Gaps = 23/206 (11%)
Query: 41 RWFRRFQEVTWTH-----LQN-IASNYNVSYNVDVRFRSLAEE----SQAVAQAVNRSQA 90
R+ +E T H L+N IA+ ++ + + R L E Q + Q + +++
Sbjct: 328 RYLAAQREATSVHDLNDKLENEIANKDSMHRQTEDKNRQLQERLELAEQKLQQTLRKAET 387
Query: 91 --SVQGELAQLKAWVRKLQRRGRKVDTRLRALDLTLGERSQ--QRARER-KAHKAQRDAL 145
V+ ELAQ A + K + R ++ RLR ++ L E++Q QRAR+R K ++ L
Sbjct: 388 LPEVEAELAQRVAALSKAEERHGNIEERLRQMEAQLEEKNQELQRARQREKMNEEHNKRL 447
Query: 146 QDSLARL-----EGLVHSQGARLAALEGRLPVAHPGTAALGPALVPTPTQPEE--LGPTS 198
D++ +L E L R+AALE + + +A L T ++ L +
Sbjct: 448 SDTVDKLLSESNERLQLHLKERMAALEDKNSLLREVESA-KKQLEETQHDKDQLVLNIEA 506
Query: 199 LKLQRDRQELRAASEHRGPPQDSSAP 224
L+ + D LR AS H G P S P
Sbjct: 507 LRAELDHMRLRGASLHHGRPHLGSVP 532
>gi|194272142 myosin IXB isoform 2 [Homo sapiens]
Length = 2022
Score = 46.6 bits (109), Expect = 5e-05
Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 14/166 (8%)
Query: 78 SQAVAQAVNRSQASVQGELAQLKAWVRKLQRRGRKVDTRLRAL---DLTLGERSQQRARE 134
S V +A+ R+QA+V + + W RKL R ++ RL++L L SQ + +
Sbjct: 992 SYRVRRALERTQAAVYLQASWRGYWQRKLYRHQKQSIIRLQSLCRGHLQRKSFSQMISEK 1051
Query: 135 RKAHKAQRDALQDSLARLE--GLVHSQGARLAALEGRLPVAHPGTAALGPALVPTPTQPE 192
+KA + +R+AL+ + A E G + G + A +G P G A P + P+ P
Sbjct: 1052 QKAEEKEREALEAARAGAEEGGQGQAAGGQQVAEQGPEPAEDGGHLASEPEVQPSDRSP- 1110
Query: 193 ELGPTSLKLQRDRQELRAASEHRGPPQDSSAPLQGRREPPASGSHR 238
L+ E A S + P + + + P+S R
Sbjct: 1111 --------LEHSSPEKEAPSPEKTLPPQKTVAAESHEKVPSSREKR 1148
>gi|33356170 myosin IXB isoform 1 [Homo sapiens]
Length = 2157
Score = 46.6 bits (109), Expect = 5e-05
Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 14/166 (8%)
Query: 78 SQAVAQAVNRSQASVQGELAQLKAWVRKLQRRGRKVDTRLRAL---DLTLGERSQQRARE 134
S V +A+ R+QA+V + + W RKL R ++ RL++L L SQ + +
Sbjct: 992 SYRVRRALERTQAAVYLQASWRGYWQRKLYRHQKQSIIRLQSLCRGHLQRKSFSQMISEK 1051
Query: 135 RKAHKAQRDALQDSLARLE--GLVHSQGARLAALEGRLPVAHPGTAALGPALVPTPTQPE 192
+KA + +R+AL+ + A E G + G + A +G P G A P + P+ P
Sbjct: 1052 QKAEEKEREALEAARAGAEEGGQGQAAGGQQVAEQGPEPAEDGGHLASEPEVQPSDRSP- 1110
Query: 193 ELGPTSLKLQRDRQELRAASEHRGPPQDSSAPLQGRREPPASGSHR 238
L+ E A S + P + + + P+S R
Sbjct: 1111 --------LEHSSPEKEAPSPEKTLPPQKTVAAESHEKVPSSREKR 1148
>gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B
subunit [Homo sapiens]
Length = 2339
Score = 44.3 bits (103), Expect = 2e-04
Identities = 55/209 (26%), Positives = 83/209 (39%), Gaps = 31/209 (14%)
Query: 77 ESQAVAQAVNRSQASVQG--ELAQLKAWVRKLQRRGRKVDTRLRALDLTLGERSQQRARE 134
ESQ A ++ R A Q + + +K + L +R R D ++
Sbjct: 1994 ESQGRAASMPRLAAETQPVTDASPMKRSISTLAQRPRGTHLCSTTPDRPPPSQASSHHHH 2053
Query: 135 RKAHKAQRDALQDSLARLEGLVHSQGARLAALEGRLPVAHPGTAALGPALVPTPTQPEEL 194
+ H+ +RD Q SL + G L+A P ++A+GP L P
Sbjct: 2054 HRCHR-RRDRKQRSLEK--------GPSLSADMDGAP-----SSAVGPGLPPGE------ 2093
Query: 195 GPTSLKLQRDRQELRAASEHRGPPQDSSAPLQ--------GRREPPASGSHRVLSGTAPK 246
GPT + +R+R++ R S+ R P SS+ Q G REPP T+P
Sbjct: 2094 GPTGCRRERERRQERGRSQERRQPSSSSSEKQRFYSCDRFGGREPPKPKPSLSSHPTSPT 2153
Query: 247 DPRQQAWSPQVPGEICGVGPTLVFPNAST 275
++ PQ G + G P L AST
Sbjct: 2154 AGQEPGPHPQGSGSVNG-SPLLSTSGAST 2181
>gi|169171580 PREDICTED: hypothetical protein [Homo sapiens]
Length = 197
Score = 40.8 bits (94), Expect = 0.003
Identities = 40/125 (32%), Positives = 51/125 (40%), Gaps = 23/125 (18%)
Query: 127 RSQQRARERKAHKAQRDALQDSLARLEGLVHSQGARLAALEGRLPVAHPGTAALGPALVP 186
R Q+A R +A+R A + L G H R AA G L PG A P+ P
Sbjct: 57 RDGQQAGLRGKRRARRVAPEARPPFLAGYEHQPRPR-AATPGFLSFRSPGAAV--PSCFP 113
Query: 187 TPTQPEELGPTSLKLQRDRQELRAASEHRGP-PQDSSAPLQGRREPPASGSHRVLSGTAP 245
T +LG RGP P +S P + R PPA H LSG+ P
Sbjct: 114 TAAAHRDLGEPG----------------RGPSPSQASGPSRSPRVPPA---HPELSGSRP 154
Query: 246 KDPRQ 250
+ PR+
Sbjct: 155 RSPRR 159
>gi|113419324 PREDICTED: hypothetical protein [Homo sapiens]
Length = 197
Score = 40.8 bits (94), Expect = 0.003
Identities = 40/125 (32%), Positives = 51/125 (40%), Gaps = 23/125 (18%)
Query: 127 RSQQRARERKAHKAQRDALQDSLARLEGLVHSQGARLAALEGRLPVAHPGTAALGPALVP 186
R Q+A R +A+R A + L G H R AA G L PG A P+ P
Sbjct: 57 RDGQQAGLRGKRRARRVAPEARPPFLAGYEHQPRPR-AATPGFLSFRSPGAAV--PSCFP 113
Query: 187 TPTQPEELGPTSLKLQRDRQELRAASEHRGP-PQDSSAPLQGRREPPASGSHRVLSGTAP 245
T +LG RGP P +S P + R PPA H LSG+ P
Sbjct: 114 TAAAHRDLGEPG----------------RGPSPSQASGPSRSPRVPPA---HPELSGSRP 154
Query: 246 KDPRQ 250
+ PR+
Sbjct: 155 RSPRR 159
>gi|113418864 PREDICTED: hypothetical protein [Homo sapiens]
Length = 197
Score = 40.8 bits (94), Expect = 0.003
Identities = 40/125 (32%), Positives = 51/125 (40%), Gaps = 23/125 (18%)
Query: 127 RSQQRARERKAHKAQRDALQDSLARLEGLVHSQGARLAALEGRLPVAHPGTAALGPALVP 186
R Q+A R +A+R A + L G H R AA G L PG A P+ P
Sbjct: 57 RDGQQAGLRGKRRARRVAPEARPPFLAGYEHQPRPR-AATPGFLSFRSPGAAV--PSCFP 113
Query: 187 TPTQPEELGPTSLKLQRDRQELRAASEHRGP-PQDSSAPLQGRREPPASGSHRVLSGTAP 245
T +LG RGP P +S P + R PPA H LSG+ P
Sbjct: 114 TAAAHRDLGEPG----------------RGPSPSQASGPSRSPRVPPA---HPELSGSRP 154
Query: 246 KDPRQ 250
+ PR+
Sbjct: 155 RSPRR 159
>gi|239509076 PREDICTED: hypothetical protein [Homo sapiens]
Length = 197
Score = 40.8 bits (94), Expect = 0.003
Identities = 40/125 (32%), Positives = 51/125 (40%), Gaps = 23/125 (18%)
Query: 127 RSQQRARERKAHKAQRDALQDSLARLEGLVHSQGARLAALEGRLPVAHPGTAALGPALVP 186
R Q+A R +A+R A + L G H R AA G L PG A P+ P
Sbjct: 57 RDGQQAGLRGKRRARRVAPEARPPFLAGYEHQPRPR-AATPGFLSFRSPGAAV--PSCFP 113
Query: 187 TPTQPEELGPTSLKLQRDRQELRAASEHRGP-PQDSSAPLQGRREPPASGSHRVLSGTAP 245
T +LG RGP P +S P + R PPA H LSG+ P
Sbjct: 114 TAAAHRDLGEPG----------------RGPSPSQASGPSRSPRVPPA---HPELSGSRP 154
Query: 246 KDPRQ 250
+ PR+
Sbjct: 155 RSPRR 159
>gi|71361682 nuclear mitotic apparatus protein 1 [Homo sapiens]
Length = 2115
Score = 40.8 bits (94), Expect = 0.003
Identities = 41/160 (25%), Positives = 75/160 (46%), Gaps = 8/160 (5%)
Query: 75 AEESQA-VAQAVNRSQASVQGELAQLKAWVRKLQRRGRKVDTRLRALDLTLGERSQQ--- 130
A+E QA +AQ + + + + QG Q++ L+++ +++ + T + +QQ
Sbjct: 528 AKEKQAQLAQTLQQQEQASQGLRHQVEQLSSSLKQKEQQLKEVAEKQEATRQDHAQQLAT 587
Query: 131 RARERKAHKAQRDALQDSLARLEGLVHSQGARLAALEGRLPVAHPGTAALGPALVPTPTQ 190
A ER+A +RDA +L +LE L + A+L L+ +L VA+ + ++ +
Sbjct: 588 AAEEREASLRERDA---ALKQLEALEKEKAAKLEILQQQLQVANEARDSAQTSVTQAQRE 644
Query: 191 PEELGPTSLKLQRDRQELRAASEHRGPPQDSSAPLQGRRE 230
EL +LQ + R +H Q + LQ R E
Sbjct: 645 KAELSRKVEELQACVETAR-QEQHEAQAQVAELELQLRSE 683
Score = 31.6 bits (70), Expect = 1.6
Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 76 EESQAVAQAVNRSQASVQGELAQLKAWVRKLQRRGRKVDTRLRALDLTLGERSQQRARER 135
+ +Q R +A + ++ +L+A V ++ + ++ L+L L QQ+A E+
Sbjct: 632 DSAQTSVTQAQREKAELSRKVEELQACVETARQEQHEAQAQVAELELQL-RSEQQKATEK 690
Query: 136 KAHKAQRDALQDSLARLE 153
+ ++D LQ+ L L+
Sbjct: 691 ERVAQEKDQLQEQLQALK 708
Score = 30.8 bits (68), Expect = 2.8
Identities = 19/78 (24%), Positives = 33/78 (42%)
Query: 70 RFRSLAEESQAVAQAVNRSQASVQGELAQLKAWVRKLQRRGRKVDTRLRALDLTLGERSQ 129
R SL + +NR +GE +LK V + +K++ RLR L S
Sbjct: 1222 RKNSLISSLEEEVSILNRQVLEKEGESKELKRLVMAESEKSQKLEERLRLLQAETASNSA 1281
Query: 130 QRARERKAHKAQRDALQD 147
+ A A + + +L++
Sbjct: 1282 RAAERSSALREEVQSLRE 1299
>gi|122937382 Fas (TNFRSF6) binding factor 1 [Homo sapiens]
Length = 1133
Score = 40.8 bits (94), Expect = 0.003
Identities = 33/100 (33%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 159 QGARLAALEGRLPVAHPGTAALGPALVPTPTQPEELGPTSLKLQRDRQELRAASEHRGPP 218
Q R A G P PG+ P + +P QP + G L L+ + +L AS R
Sbjct: 306 QSVRFFADSGADPKGEPGSKQ-SPPMASSPIQPRKGGADWLGLKDEDLDLFPASPTREAH 364
Query: 219 QDSSAPLQGRREPPASGSHRVLSGTAP---KDPRQQAWSP 255
++SS P+ PPAS H +G P K P + A SP
Sbjct: 365 RESSVPVTPSVPPPAS-QHSTPAGLPPSRAKPPTEGAGSP 403
>gi|145386517 phostensin [Homo sapiens]
Length = 613
Score = 39.7 bits (91), Expect = 0.006
Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 13/141 (9%)
Query: 124 LGERSQQRARERKAHKAQRDALQDSLARLEGLVHSQGARLAALEGRLPVAHPGTAALGPA 183
L R Q+ A R KA+R+ L A GL+ + A+L G P GT GP
Sbjct: 12 LARRRQEEASVRGREKAERERLSQMPAWKRGLLERRRAKLGLSPGE-PSPVLGTVEAGP- 69
Query: 184 LVPTPTQP----EELGPTS----LKLQRDRQELRAASEHRGPPQDSSAPLQGRREPPASG 235
P P + E +GP ++ +R +Q+ + + PL+ R P+ G
Sbjct: 70 --PDPDESAVLLEAIGPVHQNRFIRQERQQQQQQQQRSEELLAERKPGPLEARERRPSPG 127
Query: 236 SHRVLSGTAPKDPRQQAWSPQ 256
R S ++ R++ SP+
Sbjct: 128 EMRDQSPKG-RESREERLSPR 147
>gi|199559805 phostensin [Homo sapiens]
Length = 613
Score = 39.7 bits (91), Expect = 0.006
Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 13/141 (9%)
Query: 124 LGERSQQRARERKAHKAQRDALQDSLARLEGLVHSQGARLAALEGRLPVAHPGTAALGPA 183
L R Q+ A R KA+R+ L A GL+ + A+L G P GT GP
Sbjct: 12 LARRRQEEASVRGREKAERERLSQMPAWKRGLLERRRAKLGLSPGE-PSPVLGTVEAGP- 69
Query: 184 LVPTPTQP----EELGPTS----LKLQRDRQELRAASEHRGPPQDSSAPLQGRREPPASG 235
P P + E +GP ++ +R +Q+ + + PL+ R P+ G
Sbjct: 70 --PDPDESAVLLEAIGPVHQNRFIRQERQQQQQQQQRSEELLAERKPGPLEARERRPSPG 127
Query: 236 SHRVLSGTAPKDPRQQAWSPQ 256
R S ++ R++ SP+
Sbjct: 128 EMRDQSPKG-RESREERLSPR 147
>gi|133922582 zinc finger protein 358 [Homo sapiens]
Length = 568
Score = 38.5 bits (88), Expect = 0.013
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 191 PEELGPTSLKLQRDRQELRAASEHRGPPQDSSAPLQGRREPPASGSHRVLSGTAPKDPRQ 250
PE+L P S + D ++L E P + P+ +P A G+ P+DP
Sbjct: 33 PEDLDPVSEDPEPDPEDLNTVPEDVDPSYEDLEPVSEDLDPDAEA-----PGSEPQDPDP 87
Query: 251 QAWSPQVPGEICGVGPTLVFPNASTRNVVFLSPG 284
+ S + ++ G P ++ PN+ T LSPG
Sbjct: 88 MSSSFDLDPDVIGPVPLILDPNSDT-----LSPG 116
>gi|29171755 PTPRF interacting protein alpha 2 [Homo sapiens]
Length = 1257
Score = 38.1 bits (87), Expect = 0.017
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 74 LAEESQAVAQAVNRSQASVQGELAQLKAWVRKLQRRGRKVDTRLRALDLTLGERSQ--QR 131
LAE+ + V+ ELAQ A + K + R ++ R+R L+ L E++Q QR
Sbjct: 391 LAEQKLQQTMRKAETLPEVEAELAQRIAALTKAEERHGNIEERMRHLEGQLEEKNQELQR 450
Query: 132 ARER-KAHKAQRDALQDSLARL-----EGLVHSQGARLAALE 167
AR+R K ++ L D++ RL E L R+AALE
Sbjct: 451 ARQREKMNEEHNKRLSDTVDRLLTESNERLQLHLKERMAALE 492
>gi|21735548 centrosomal protein 2 [Homo sapiens]
Length = 2442
Score = 37.4 bits (85), Expect = 0.030
Identities = 42/172 (24%), Positives = 66/172 (38%), Gaps = 19/172 (11%)
Query: 70 RFRSLAEESQAVAQAVNRSQASVQGELAQLKAWVRKLQRRGRKVDTRLRALDLTLGE--- 126
R + A+ Q + + + GEL K R+L+ R++AL+ LG+
Sbjct: 1835 RVKEKADALQGALEQAHMTLKERHGELQDHKEQARRLEEELAVEGRRVQALEEVLGDLRA 1894
Query: 127 -----------RSQQRARERKAHKAQRDALQDSLARLEGLVHSQGARLAALEGRLPVA-H 174
QQ A + + H+ + ALQDS + + ++ + L AL + H
Sbjct: 1895 ESREQEKALLALQQQCAEQAQEHEVETRALQDSWLQAQAVLKERDQELEALRAESQSSRH 1954
Query: 175 PGTAALGPALVPTPTQPEELGPTSLKLQRDRQELRAASEHRGPPQDSSAPLQ 226
AA A E LG LQ Q L +E + S+A LQ
Sbjct: 1955 QEEAARARA----EALQEALGKAHAALQGKEQHLLEQAELSRSLEASTATLQ 2002
>gi|194272140 dendrin [Homo sapiens]
Length = 711
Score = 37.4 bits (85), Expect = 0.030
Identities = 39/138 (28%), Positives = 57/138 (41%), Gaps = 15/138 (10%)
Query: 125 GERSQQRARE---RKAHKAQRDALQDSLARLEGLVHSQGARLAALEGRLPVAHPGTAALG 181
G ++ RARE RKA +R+A + R + + GAR + P
Sbjct: 100 GPLAEVRAREQEKRKAASQEREAKETERKRRK----AGGARRSPPGRPRPEPRNAPRVAQ 155
Query: 182 PALVPTPTQPEELGPTSLKLQRDRQELRAASEHRGPPQDSSAPLQGRRE-PPASGSHRVL 240
A +P P +PE L P R +A P + P GRR PP+ +H +L
Sbjct: 156 LAGLPAPLRPERLAPVG------RAPRPSAQPQSDPGSAWAGPWGGRRPGPPSYEAHLLL 209
Query: 241 SGTAPKDPRQQAWSPQVP 258
G+A PR++ W P
Sbjct: 210 RGSAGTAPRRR-WDRPPP 226
>gi|59710093 G-protein coupled receptor 112 [Homo sapiens]
Length = 3080
Score = 37.4 bits (85), Expect = 0.030
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 354 QWHHICVIWTSTQGRYWLHVDRRLVATGSRFREGYEIPPGGSLVLGQEQDSVGGGFDS-S 412
QWH IC+IW +G+ L +++ + + + + + P G+L LG + S
Sbjct: 118 QWHTICLIWDGVKGKLELFLNKERILEVT--DQPHNLTPHGTLFLGHFLKNESSEVKSMM 175
Query: 413 EAFVGSMSGLAIWDRAL 429
+F GS+ +WD L
Sbjct: 176 RSFPGSLYYFQLWDHIL 192
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,579,649
Number of Sequences: 37866
Number of extensions: 1048810
Number of successful extensions: 4717
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 184
Number of HSP's that attempted gapping in prelim test: 4319
Number of HSP's gapped (non-prelim): 550
length of query: 473
length of database: 18,247,518
effective HSP length: 106
effective length of query: 367
effective length of database: 14,233,722
effective search space: 5223775974
effective search space used: 5223775974
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.