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Search of human proteins with 13491174
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13491174 MARCKS-like 1 [Homo sapiens]
(195 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13491174 MARCKS-like 1 [Homo sapiens] 391 e-109
gi|239749902 PREDICTED: similar to hCG2040253 [Homo sapiens] 140 9e-34
gi|239744202 PREDICTED: similar to hCG2040253 [Homo sapiens] 139 2e-33
gi|153070260 myristoylated alanine-rich protein kinase C substra... 111 3e-25
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 55 5e-08
gi|30795231 brain abundant, membrane attached signal protein 1 [... 52 2e-07
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 47 1e-05
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 47 1e-05
gi|48762934 alpha 2 type I collagen [Homo sapiens] 46 2e-05
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens] 45 3e-05
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 45 4e-05
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 45 4e-05
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre... 45 5e-05
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 44 9e-05
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 44 9e-05
gi|226497734 RNA binding motif protein 19 [Homo sapiens] 44 1e-04
gi|226497654 RNA binding motif protein 19 [Homo sapiens] 44 1e-04
gi|226497574 RNA binding motif protein 19 [Homo sapiens] 44 1e-04
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 44 1e-04
gi|224458284 Rho GTPase activating protein 23 [Homo sapiens] 43 1e-04
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa... 43 2e-04
gi|27894378 chloride intracellular channel 6 [Homo sapiens] 43 2e-04
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 42 3e-04
gi|33286446 opioid growth factor receptor [Homo sapiens] 42 3e-04
gi|56676397 ankyrin repeat domain 11 [Homo sapiens] 42 3e-04
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 42 3e-04
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 42 4e-04
gi|156104891 general transcription factor IIF, polypeptide 1, 74... 42 4e-04
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 42 4e-04
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 42 4e-04
>gi|13491174 MARCKS-like 1 [Homo sapiens]
Length = 195
Score = 391 bits (1004), Expect = e-109
Identities = 195/195 (100%), Positives = 195/195 (100%)
Query: 1 MGSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGA 60
MGSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGA
Sbjct: 1 MGSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGA 60
Query: 61 TGDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASS 120
TGDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASS
Sbjct: 61 TGDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASS 120
Query: 121 PTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEEAGPQATEPSTPS 180
PTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEEAGPQATEPSTPS
Sbjct: 121 PTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEEAGPQATEPSTPS 180
Query: 181 GPESGPTPASAEQNE 195
GPESGPTPASAEQNE
Sbjct: 181 GPESGPTPASAEQNE 195
>gi|239749902 PREDICTED: similar to hCG2040253 [Homo sapiens]
Length = 251
Score = 140 bits (352), Expect = 9e-34
Identities = 94/184 (51%), Positives = 102/184 (55%), Gaps = 53/184 (28%)
Query: 12 DVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGATGDAIEPAPPS 71
DVT + AAGASPAKANGQ++GH
Sbjct: 55 DVTTKVAAGASPAKANGQDDGH-------------------------------------- 76
Query: 72 QGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASSPTEEEQEQGEI 131
GAEAKG V P KFS KK FK S L F +N KE GG SSAS P EE QEQ
Sbjct: 77 -GAEAKGAVSP-------NKFSLKKSFKFSSLLFHKNWKEDGGSSSASQP-EEMQEQ--- 124
Query: 132 GACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEEAGPQATEPSTPSGPESGPTPASA 191
GACS++GTAQE KAAATPESQEPQAKGAE +AASEE G + G ESGP P SA
Sbjct: 125 GACSNKGTAQERKAAATPESQEPQAKGAEGNAASEEAPGYRDIH---SLGAESGPIPGSA 181
Query: 192 EQNE 195
EQNE
Sbjct: 182 EQNE 185
>gi|239744202 PREDICTED: similar to hCG2040253 [Homo sapiens]
Length = 251
Score = 139 bits (350), Expect = 2e-33
Identities = 94/184 (51%), Positives = 102/184 (55%), Gaps = 53/184 (28%)
Query: 12 DVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGATGDAIEPAPPS 71
DVT + AAGASPAKANGQ++GH
Sbjct: 55 DVTTKVAAGASPAKANGQDDGH-------------------------------------- 76
Query: 72 QGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASSPTEEEQEQGEI 131
GAEAKG V P KFS KK FK S L F +N KE GG SSAS P EE QEQ
Sbjct: 77 -GAEAKGAVSP-------NKFSLKKSFKFSRLLFHKNWKEDGGSSSASQP-EEMQEQ--- 124
Query: 132 GACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEEAGPQATEPSTPSGPESGPTPASA 191
GACS++GTAQE KAAATPESQEPQAKGAE +AASEE G + G ESGP P SA
Sbjct: 125 GACSNKGTAQERKAAATPESQEPQAKGAEGNAASEEAPGYRDIH---SLGAESGPIPGSA 181
Query: 192 EQNE 195
EQNE
Sbjct: 182 EQNE 185
>gi|153070260 myristoylated alanine-rich protein kinase C substrate
[Homo sapiens]
Length = 332
Score = 111 bits (278), Expect = 3e-25
Identities = 93/265 (35%), Positives = 119/265 (44%), Gaps = 72/265 (27%)
Query: 1 MGSQSSK-APRGDVTAEE----AAGASPAKANGQENGHVKSNGDLSP-----------KG 44
MG+Q SK A +G+ AE A +SP+KANGQENGHVK NGD SP +
Sbjct: 1 MGAQFSKTAAKGEAAAERPGEAAVASSPSKANGQENGHVKVNGDASPAAAESGAKEELQA 60
Query: 45 EGESPPVNGTDEAAGATGDAI-------EPA----------PPSQGAEAKGEV------- 80
G +P + + AA +G A EPA P + A A+GE
Sbjct: 61 NGSAPAADKEEPAAAGSGAASPSAAEKGEPAAAAAPEAGASPVEKEAPAEGEAAEPGSPT 120
Query: 81 -------------------------PPKETPKKKKK-FSFKKPFKLSGLSFKRNRKEGGG 114
P ETPKKKKK FSFKK FKLSG SFK+N+KE G
Sbjct: 121 AAEGEAASAASSTSSPKAEDGATPSPSNETPKKKKKRFSFKKSFKLSGFSFKKNKKEAGE 180
Query: 115 DSSASSPTEE---EQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASE-EEAG 170
A +P E ++ G A + E A G+ AA P E A G E +A + +EA
Sbjct: 181 GGEAEAPAAEGGKDEAAGGAAAAAAEAGAASGEQAAAP--GEEAAAGEEGAAGGDPQEAK 238
Query: 171 PQATEPSTPSGPESGPTPASAEQNE 195
PQ + P S T A+ E ++
Sbjct: 239 PQEAAVAPEKPPASDETKAAEEPSK 263
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 54.7 bits (130), Expect = 5e-08
Identities = 50/197 (25%), Positives = 83/197 (42%), Gaps = 21/197 (10%)
Query: 12 DVTAEEAAGASPAKANGQENGHV-----KSNGDLSPKGEGESPPVNGTDEAAGATGDAIE 66
DV A+EA G + ++ G E K+ G +P+ EGE+ P + EA A G+A
Sbjct: 2084 DVDAQEAEGEAQPESEGVEAPEAEGEAQKAEGIEAPETEGEAQPESEGIEAPEAEGEAQP 2143
Query: 67 PAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASSPTEEEQ 126
+ + +A+GE P+ + ++ + +L G+ E +S E E
Sbjct: 2144 ESEGVEAQDAEGEAQPESEGIEAQEAEEEAQPELEGVEAPEAEGEAQPESEGIEAPEAEG 2203
Query: 127 E-----QGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEEAGPQ--------- 172
E +G ++E E + TPE++ +E E++ PQ
Sbjct: 2204 EAQPELEGVEAPEAEEEAQPEPEGVETPEAEGEAQPESEGETQGEKKGSPQVSLGDGQSE 2263
Query: 173 -ATEPSTPSGPESGPTP 188
A+E S+P PE PTP
Sbjct: 2264 EASESSSPV-PEDRPTP 2279
Score = 47.4 bits (111), Expect = 8e-06
Identities = 52/198 (26%), Positives = 84/198 (42%), Gaps = 16/198 (8%)
Query: 12 DVTAEEAAGAS--PAKANGQENGHV-KSNGDLSPKGEG-ESPPVNGTDEAAGATGDAIEP 67
++ E AAG P +++G E ++ G+ P+ EG E+P G +A A G+A
Sbjct: 1813 NLQGEAAAGGDQDPGQSDGAEGIEAPEAEGEAQPESEGVEAPEAEG--DAQEAEGEAQPE 1870
Query: 68 APPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSA--SSPTEEE 125
+ + EA+GE P+ + + ++ + G KE ++ + + TE E
Sbjct: 1871 SEDVEAPEAEGEAQPESEDVETPEAEWEVQPESEGAEAPEAEKEAQPETESVEALETEGE 1930
Query: 126 QEQGEIGACSDEG--TAQEGKAAATPESQ--EPQAKGAEASAASEE----EAGPQATEPS 177
E GA + E AQE + PES+ E Q EA SE+ E + E
Sbjct: 1931 DEPESEGAEAQEAEEAAQEAEGQTQPESEVIESQEAEEEAQPESEDVEALEVEVETQEAE 1990
Query: 178 TPSGPESGPTPASAEQNE 195
+ PES A + E
Sbjct: 1991 GEAQPESEDVEAPEAEGE 2008
Score = 46.6 bits (109), Expect = 1e-05
Identities = 50/196 (25%), Positives = 80/196 (40%), Gaps = 32/196 (16%)
Query: 3 SQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGATG 62
S+ +A +V +EA G + ++ E +P+ EGE + +E A
Sbjct: 1974 SEDVEALEVEVETQEAEGEAQPESEDVE----------APEAEGE---MQEAEEEAQPES 2020
Query: 63 DAIEPAPPSQGAEAK---GEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSAS 119
D +E P S+G EA+ GE E + + + P + +E G
Sbjct: 2021 DGVEAQPKSEGEEAQEVEGETQKTEGDAQPESDGVEAP------EAEEEAQEAEG----- 2069
Query: 120 SPTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEEAGPQATEPSTP 179
E ++ +GE S++ AQE + A PES+ +A AE A E G +A E
Sbjct: 2070 ---EVQEAEGEAHPESEDVDAQEAEGEAQPESEGVEAPEAEGEAQKAE--GIEAPETEGE 2124
Query: 180 SGPESGPTPASAEQNE 195
+ PES A + E
Sbjct: 2125 AQPESEGIEAPEAEGE 2140
Score = 46.2 bits (108), Expect = 2e-05
Identities = 49/205 (23%), Positives = 81/205 (39%), Gaps = 25/205 (12%)
Query: 3 SQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGATG 62
S+ +AP + A++A G + G+ +S G +P+ EGE+ P + EA A G
Sbjct: 2098 SEGVEAPEAEGEAQKAEGIEAPETEGE--AQPESEGIEAPEAEGEAQPESEGVEAQDAEG 2155
Query: 63 DAI-------------EPAPPSQGAEA---KGEVPPKETPKKKKKFSFKKPFKLSGLSFK 106
+A E P +G EA +GE P+ + + + +L G+
Sbjct: 2156 EAQPESEGIEAQEAEEEAQPELEGVEAPEAEGEAQPESEGIEAPEAEGEAQPELEGVEAP 2215
Query: 107 RNRKEGGGD-SSASSPTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAAS 165
+E + +P E + Q E EG Q G+ +P+ + EAS +S
Sbjct: 2216 EAEEEAQPEPEGVETPEAEGEAQPE-----SEGETQ-GEKKGSPQVSLGDGQSEEASESS 2269
Query: 166 EEEAGPQATEPSTPSGPESGPTPAS 190
+ T P +P G P S
Sbjct: 2270 SPVPEDRPTPPPSPGGDTPHQRPGS 2294
Score = 43.5 bits (101), Expect = 1e-04
Identities = 46/193 (23%), Positives = 82/193 (42%), Gaps = 16/193 (8%)
Query: 13 VTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGATGDAIEPAPPSQ 72
+ A EA G + ++ G E ++ GD + + EGE+ P + EA A G+A + +
Sbjct: 1835 IEAPEAEGEAQPESEGVEAP--EAEGD-AQEAEGEAQPESEDVEAPEAEGEAQPESEDVE 1891
Query: 73 GAEAKGEVPPK----ETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASSPTEEEQEQ 128
EA+ EV P+ E P+ +K+ + + + + E G + + ++ +
Sbjct: 1892 TPEAEWEVQPESEGAEAPEAEKEAQPETESVEALETEGEDEPESEGAEAQEAEEAAQEAE 1951
Query: 129 GEIGACSDEGTAQEGKAAATPESQ---------EPQAKGAEASAASEEEAGPQATEPSTP 179
G+ S+ +QE + A PES+ E Q EA SE+ P+A
Sbjct: 1952 GQTQPESEVIESQEAEEEAQPESEDVEALEVEVETQEAEGEAQPESEDVEAPEAEGEMQE 2011
Query: 180 SGPESGPTPASAE 192
+ E+ P E
Sbjct: 2012 AEEEAQPESDGVE 2024
Score = 43.1 bits (100), Expect = 1e-04
Identities = 54/190 (28%), Positives = 82/190 (43%), Gaps = 34/190 (17%)
Query: 15 AEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGATGDAIEPAPPSQGA 74
+E +AG+ +A QE + G+ +G G + G + AAG D P Q
Sbjct: 1779 SETSAGSELGEAE-QEGEGISERGETGGQGSGHEDNLQG-EAAAGGDQD------PGQSD 1830
Query: 75 EAKG-EVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASSPTEEEQEQGEIGA 133
A+G E P E + + + P E GD+ + E + E ++ A
Sbjct: 1831 GAEGIEAPEAEGEAQPESEGVEAP-------------EAEGDAQEAEG-EAQPESEDVEA 1876
Query: 134 CSDEGTAQ-EGKAAATPESQ---EPQAKGAEASAASEEEAGP-----QATEPSTPSGPES 184
EG AQ E + TPE++ +P+++GAEA A E+EA P +A E PES
Sbjct: 1877 PEAEGEAQPESEDVETPEAEWEVQPESEGAEAPEA-EKEAQPETESVEALETEGEDEPES 1935
Query: 185 -GPTPASAEQ 193
G AE+
Sbjct: 1936 EGAEAQEAEE 1945
Score = 37.4 bits (85), Expect = 0.008
Identities = 47/193 (24%), Positives = 80/193 (41%), Gaps = 36/193 (18%)
Query: 5 SSKAPRGDVTAEEAAGASPAKANGQENGHVKS-NGDLSPKGEGESPPVNGTD--EAAGAT 61
S+ + G+ E + + GQ +GH + G+ + G+ + +G + EA A
Sbjct: 1782 SAGSELGEAEQEGEGISERGETGGQGSGHEDNLQGEAAAGGDQDPGQSDGAEGIEAPEAE 1841
Query: 62 GDAIEPAPPSQGA---EAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSA 118
G+A P S+G EA+G+ E + + + P E G++
Sbjct: 1842 GEA---QPESEGVEAPEAEGDAQEAEGEAQPESEDVEAP-------------EAEGEAQP 1885
Query: 119 SSPTEEEQE-QGEIGACSDEGTAQEGKAAATPESQ-----------EPQAKGAEASAASE 166
S E E + E+ S+ A E + A PE++ EP+++GAEA A
Sbjct: 1886 ESEDVETPEAEWEVQPESEGAEAPEAEKEAQPETESVEALETEGEDEPESEGAEAQEA-- 1943
Query: 167 EEAGPQATEPSTP 179
EEA +A + P
Sbjct: 1944 EEAAQEAEGQTQP 1956
Score = 32.7 bits (73), Expect = 0.20
Identities = 37/173 (21%), Positives = 69/173 (39%), Gaps = 13/173 (7%)
Query: 3 SQSSKAPRGDVTAE-EAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTD---EAA 58
S+ +AP + A+ E G +A +E + G +P+ EGE+ P + + E
Sbjct: 2193 SEGIEAPEAEGEAQPELEGVEAPEA--EEEAQPEPEGVETPEAEGEAQPESEGETQGEKK 2250
Query: 59 GATGDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSA 118
G+ ++ + +E+ VP ++ P P + G + G S A
Sbjct: 2251 GSPQVSLGDGQSEEASESSSPVP-EDRPTPPPSPGGDTPHQRPG------SQTGPSSSRA 2303
Query: 119 SSPTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEEAGP 171
SS Q+ E + + + K+ TP ++ + S+ SE+E P
Sbjct: 2304 SSWGNCWQKDSENDHVLGDTRSPDAKSTGTPHAERKATRMYPESSTSEQEEAP 2356
Score = 28.1 bits (61), Expect = 4.9
Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 10/78 (12%)
Query: 123 EEEQEQGEIGACSDEGTAQEG-------KAAATPESQEPQAKGA-EASAASEEEAG--PQ 172
+E E G G +EG +EG E+ P KG+ E EEEAG
Sbjct: 1378 KEGPEGGLQGEALEEGLKEEGLPEEGSVHGQELSEASSPDGKGSQEDDPVQEEEAGRASA 1437
Query: 173 ATEPSTPSGPESGPTPAS 190
+ EP G E P S
Sbjct: 1438 SAEPCPAEGTEEPTEPPS 1455
Score = 27.7 bits (60), Expect = 6.5
Identities = 44/208 (21%), Positives = 76/208 (36%), Gaps = 26/208 (12%)
Query: 4 QSSKAPRGDVTAEEAAGASPAKAN-GQENGHVKSNGDLSPKGEGESPPVNGTDEAAGATG 62
++ + G+ EEA K G + V+ +GEG+ +E G
Sbjct: 1305 ETKEGTEGEGLQEEAVQLEETKTEEGLQEEGVQLEETKETEGEGQQEEEAQLEEIEETGG 1364
Query: 63 DAIEPA-----PPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSS 117
+ ++ +G E G + + + K+ + + G G S
Sbjct: 1365 EGLQEEGVQLEEVKEGPE--GGLQGEALEEGLKEEGLPEEGSVHGQELSEASSPDGKGSQ 1422
Query: 118 ASSPTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEAS-AASEEEAGPQATEP 176
P +EE E G S +A+ A T E EP + +E +ASE ++G Q EP
Sbjct: 1423 EDDPVQEE----EAGRAS--ASAEPCPAEGTEEPTEPPSHLSETDPSASERQSGSQ-LEP 1475
Query: 177 STPSGP----------ESGPTPASAEQN 194
P ++ PT +AE++
Sbjct: 1476 GLEKPPGATMMGQEHTQAQPTQGAAERS 1503
Score = 27.7 bits (60), Expect = 6.5
Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 12/101 (11%)
Query: 41 SPKGEGESPPVNGTDEAAGATGDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKL 100
SP G+G +E AG + EP P A+G P E P + +
Sbjct: 1415 SPDGKGSQEDDPVQEEEAGRASASAEPCP------AEGTEEPTEPPSHLSETDPSASERQ 1468
Query: 101 SGLSFKRNRKEG------GGDSSASSPTEEEQEQGEIGACS 135
SG + ++ G + + + PT+ E+ ACS
Sbjct: 1469 SGSQLEPGLEKPPGATMMGQEHTQAQPTQGAAERSSSVACS 1509
>gi|30795231 brain abundant, membrane attached signal protein 1
[Homo sapiens]
Length = 227
Score = 52.4 bits (124), Expect = 2e-07
Identities = 53/199 (26%), Positives = 68/199 (34%), Gaps = 28/199 (14%)
Query: 1 MGSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGA 60
MG + SK +G +E A KA G E E P +AA
Sbjct: 1 MGGKLSKKKKGYNVNDEKAKEKDKKAEGAAT-------------EEEGTPKESEPQAAAE 47
Query: 61 TGDAIE-PAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSAS 119
+A E P Q AE K E E K K + + EG ++ A
Sbjct: 48 PAEAKEGKEKPDQDAEGKAEEKEGEKDAAAAKEEAPKA--------EPEKTEGAAEAKAE 99
Query: 120 SPTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEAS------AASEEEAGPQA 173
P EQEQ G + + +AAA P A G E S +E A P A
Sbjct: 100 PPKAPEQEQAAPGPAAGGEAPKAAEAAAAPAESAAPAAGEEPSKEEGEPKKTEAPAAPAA 159
Query: 174 TEPSTPSGPESGPTPASAE 192
E + P S P S+E
Sbjct: 160 QETKSDGAPASDSKPGSSE 178
Score = 50.4 bits (119), Expect = 9e-07
Identities = 54/189 (28%), Positives = 83/189 (43%), Gaps = 30/189 (15%)
Query: 15 AEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGATGDA--IEPAPPSQ 72
+E A A PA+A + G K + D EG++ G +AA A +A EP
Sbjct: 40 SEPQAAAEPAEA---KEGKEKPDQD----AEGKAEEKEGEKDAAAAKEEAPKAEPEKTEG 92
Query: 73 GAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASSPTEEEQEQGEIG 132
AEAK E PPK +++ P +G + + + +++P E+ E
Sbjct: 93 AAEAKAE-PPKAPEQEQAA-----PGPAAGGEAPKAAEAAAAPAESAAPAAGEEPSKE-- 144
Query: 133 ACSDEGTAQEGKAAATPESQEPQAKGAEAS--------AASEEEAGPQATEPSTPSGPES 184
EG ++ +A A P +QE ++ GA AS AA + P ATE + +
Sbjct: 145 ----EGEPKKTEAPAAPAAQETKSDGAPASDSKPGSSEAAPSSKETPAATEAPSSTPKAQ 200
Query: 185 GPTPASAEQ 193
GP ASAE+
Sbjct: 201 GPA-ASAEE 208
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 47.0 bits (110), Expect = 1e-05
Identities = 53/203 (26%), Positives = 72/203 (35%), Gaps = 31/203 (15%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGAT 61
G + GD+ A +GA + E G G P+G +P +G AGA
Sbjct: 656 GKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAP 715
Query: 62 GDAIEPAPPSQGAEA-------------------KGEVPPK---ETPKKKKKFSFKKPFK 99
G AP SQGA +G+ PK +P K P
Sbjct: 716 G-----APGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIG 770
Query: 100 LSGLSFKRNRKEGGGDSSASSPTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGA 159
G + K G S + PT G+ G G A G A +P AKG
Sbjct: 771 PPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPA--GFAGPPGADGQPGAKGE 828
Query: 160 EASAASEEEAGPQATEPSTPSGP 182
A ++ +AGP P+ P+GP
Sbjct: 829 PGDAGAKGDAGPPG--PAGPAGP 849
Score = 46.2 bits (108), Expect = 2e-05
Identities = 53/192 (27%), Positives = 67/192 (34%), Gaps = 19/192 (9%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGAT 61
G PRG A G + E G ++G + P+G P NG D AG
Sbjct: 179 GPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKP 238
Query: 62 GDAIEPAPPS-QGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASS 120
G E PP QG A+G P K F SGL + GD+ +
Sbjct: 239 GRPGERGPPGPQG--ARGLPGTAGLPGMKGHRGF------SGLDGAK------GDAGPAG 284
Query: 121 PTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEEAGPQATEPSTPS 180
P E GE GA G G P GA + + AGP P+ P+
Sbjct: 285 PKGEPGSPGENGAPGQMG--PRGLPGERGRPGAPGPAGARGNDGATGAAGPPG--PTGPA 340
Query: 181 GPESGPTPASAE 192
GP P A+
Sbjct: 341 GPPGFPGAVGAK 352
Score = 40.0 bits (92), Expect = 0.001
Identities = 51/211 (24%), Positives = 74/211 (35%), Gaps = 29/211 (13%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGAT 61
GS+ + RG+ AGA+ N +G + G G +P G +G
Sbjct: 362 GSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQ 421
Query: 62 GDAIEPAPPSQGAE-----------AKGEV-------PPKETPKKKKKFSFKKPFKLSGL 103
G P P E AKGE PP ++ K+ + +P +GL
Sbjct: 422 GPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGP-TGL 480
Query: 104 SFKRNRKEGGGD------SSASSPTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAK 157
+ G G + P E+G G +G+ G+A E+ P AK
Sbjct: 481 PGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGS--PGEAGRPGEAGLPGAK 538
Query: 158 GAEASAASEEEAGPQATEPSTPSGPESGPTP 188
G S S G T P P+G + P P
Sbjct: 539 GLTGSPGSPGPDG--KTGPPGPAGQDGRPGP 567
Score = 37.7 bits (86), Expect = 0.006
Identities = 48/182 (26%), Positives = 56/182 (30%), Gaps = 5/182 (2%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGAT 61
G+ K G GA A + E G G P G P G AGA
Sbjct: 776 GAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAK 835
Query: 62 GDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASSP 121
GDA P P A G + P K P +G R G S + P
Sbjct: 836 GDAGPPGPAGP-AGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGP 894
Query: 122 TEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEEAGPQATEPSTPSG 181
G+ G G + G A E P G S GP A P TP G
Sbjct: 895 PGPPGPAGKEGGKGPRG--ETGPAGRPGEVGPPGPPGPAGEKGSPGADGP-AGAPGTP-G 950
Query: 182 PE 183
P+
Sbjct: 951 PQ 952
Score = 37.4 bits (85), Expect = 0.008
Identities = 50/203 (24%), Positives = 63/203 (31%), Gaps = 20/203 (9%)
Query: 1 MGSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTD---EA 57
MG P G+ E A GA + G G+ P G +P G
Sbjct: 1000 MGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGP 1059
Query: 58 AGATGDAIE-----PAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEG 112
AG +GD E PA P A+G P+ K + + + G +
Sbjct: 1060 AGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKG------HRGF 1113
Query: 113 GGDSSASSPTEEEQEQGEIGACSDEGTAQEGKAAATPESQE----PQAKGAEASAASEEE 168
G P EQG GA G +A P P G +
Sbjct: 1114 SGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGD 1173
Query: 169 AGPQATEPSTPSGPESGPTPASA 191
AGP P P GP P P SA
Sbjct: 1174 AGP--VGPPGPPGPPGPPGPPSA 1194
Score = 34.7 bits (78), Expect = 0.053
Identities = 45/197 (22%), Positives = 64/197 (32%), Gaps = 7/197 (3%)
Query: 2 GSQSSKAPRGDVTAEEAAGAS-PAKANGQEN--GHVKSNGDLSPKGEGESPPVNGTDEAA 58
G + RG A+ AG PA G G S G+ GE P G +
Sbjct: 485 GERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSP 544
Query: 59 GATGDAIEPAPPSQGAEAKGEVPPKETPKKKKK--FSFKKPFKLSGLSFKRNRKEGGGDS 116
G+ G + PP + PP + + F P +G K + G
Sbjct: 545 GSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPP 604
Query: 117 SASSPTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEEAGPQATEP 176
A P ++ E G G G A G+ + P +G A EAG +
Sbjct: 605 GAVGPAGKDGEAGAQGPPGPAGPA--GERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQG 662
Query: 177 STPSGPESGPTPASAEQ 193
GP+ A E+
Sbjct: 663 VPGDLGAPGPSGARGER 679
Score = 32.0 bits (71), Expect = 0.34
Identities = 54/219 (24%), Positives = 70/219 (31%), Gaps = 49/219 (22%)
Query: 2 GSQSSKAPRGDVTAEEAAG-ASPAKANGQEN--GHVKSNGDLSPKG-EGE-----SPPVN 52
G K RG + A G A PA G+ G + G + P+G GE +P
Sbjct: 260 GLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPA 319
Query: 53 GTDEAAGATGDAIEPAPPSQGAE--------AKGEVPPKETPKKKKKFSFKKPFKLSGLS 104
G GATG A P P AKGE P+ P G
Sbjct: 320 GARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQG------------PRGSEGPQ 367
Query: 105 FKRNRKEGGGDSSASSPTEEEQEQGEIGACSDEGTAQEGKAAATP--------------- 149
R G + A+ P G+ GA G A P
Sbjct: 368 GVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPP 427
Query: 150 ----ESQEPQAKGAEASAASEEEAGPQATE-PSTPSGPE 183
S EP A G++ ++ E GP + P P+G E
Sbjct: 428 GPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEE 466
Score = 31.6 bits (70), Expect = 0.45
Identities = 44/187 (23%), Positives = 55/187 (29%), Gaps = 27/187 (14%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGAT 61
G+ P G GA AK G S G +GE G AGA
Sbjct: 329 GAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGE------PGPPGPAGAA 382
Query: 62 GDAIEPAPPSQ-GAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASS 120
G A P Q GA+ P ++G + G
Sbjct: 383 GPAGNPGADGQPGAKGANGAP-----------------GIAGAPGFPGARGPSGPQGPGG 425
Query: 121 PTEEEQEQGEIGACSDEG-TAQEGKAAATPESQEPQAKGAEASAASEEEAGPQATEPSTP 179
P + GE GA +G T +G+ P G E + E GP T P
Sbjct: 426 PPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGP--TGLPGP 483
Query: 180 SGPESGP 186
G GP
Sbjct: 484 PGERGGP 490
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 46.6 bits (109), Expect = 1e-05
Identities = 52/192 (27%), Positives = 66/192 (34%), Gaps = 23/192 (11%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGAT 61
G Q K +G V G P G+E G + P+GE PP +G GA
Sbjct: 600 GPQGPKGQKGSVGDPGMEG--PMGQRGRE-------GPMGPRGEA-GPPGSGEKGERGAA 649
Query: 62 GDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASSP 121
G+ PP G V PK + P L GL + GD P
Sbjct: 650 GEPGPHGPPG----VPGSVGPKGSSGSPGPQGPPGPVGLQGLRGEVGLPGVKGDKGPMGP 705
Query: 122 TEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEEAGPQATEPST--- 178
+ +QGE G G + G EP AKGA A + GP+ + T
Sbjct: 706 PGPKGDQGEKGPRGLTG--EPGMRGLPGAVGEPGAKGAMGPAGPDGHQGPRGEQGLTGMP 763
Query: 179 ----PSGPESGP 186
P GP P
Sbjct: 764 GIRGPPGPSGDP 775
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 46.2 bits (108), Expect = 2e-05
Identities = 46/192 (23%), Positives = 68/192 (35%), Gaps = 12/192 (6%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGAT 61
G + P G + + +G N E G V + G P G P G G
Sbjct: 595 GESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGK 654
Query: 62 GDAIEPAPPSQGAEAKGEV-PPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASS 120
G+ EP +GE+ P + + P +G + R G + +
Sbjct: 655 GEKGEPG-------LRGEIGNPGRDGARGAPGAVGAPGP-AGATGDRGEAGAAGPAGPAG 706
Query: 121 PTEEEQEQGEIGACSDEGTAQEGKAAATPESQ-EPQAKGAEASAASEEEAGPQATEPSTP 179
P E+GE+G G A AA P ++ E AKG + GP + P
Sbjct: 707 PRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGA--AGP 764
Query: 180 SGPESGPTPASA 191
+GP P PA +
Sbjct: 765 AGPNGPPGPAGS 776
Score = 42.7 bits (99), Expect = 2e-04
Identities = 50/196 (25%), Positives = 67/196 (34%), Gaps = 13/196 (6%)
Query: 1 MGSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGA 60
+G+ P G AAG K E G G+ G +P G AGA
Sbjct: 630 VGTAGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGA 689
Query: 61 TGDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASS 120
TGD E + A G P+ +P ++ + P +G + + G+ A
Sbjct: 690 TGDRGE----AGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKG 745
Query: 121 PTEEEQEQGEIGACSDEGTA----QEGKAAATPESQEPQAKGAEASAASEEEAGPQATEP 176
P E G G G A G A + + P G +A GP P
Sbjct: 746 PKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAG---RTGPPG--P 800
Query: 177 STPSGPESGPTPASAE 192
S SGP P PA E
Sbjct: 801 SGISGPPGPPGPAGKE 816
Score = 33.1 bits (74), Expect = 0.15
Identities = 45/183 (24%), Positives = 64/183 (34%), Gaps = 6/183 (3%)
Query: 2 GSQSSKAPRGDVTAEEAAG-ASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGA 60
G + P+G++ A AG A PA G E G +G + P G + + G AAG
Sbjct: 256 GFPGAPGPKGEIGAVGNAGPAGPAGPRG-EVGLPGLSGPVGPPGNPGANGLTGAKGAAGL 314
Query: 61 TGDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASS 120
G A P P G V + P G S + G
Sbjct: 315 PGVAGAPGLPGPRG-IPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPG 373
Query: 121 PTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEEAGPQ-ATEPSTP 179
P+ EE ++G G G +P S+ GA+ A G + A+ P+
Sbjct: 374 PSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSR--GLPGADGRAGVMGPPGSRGASGPAGV 431
Query: 180 SGP 182
GP
Sbjct: 432 RGP 434
Score = 33.1 bits (74), Expect = 0.15
Identities = 43/179 (24%), Positives = 59/179 (32%), Gaps = 21/179 (11%)
Query: 1 MGSQSSKAPRGDVTAEEAAGASPAKANGQEN--GHVKSNGDLSPKGEGESPPVNGTDEAA 58
+G K P GD P K NG + G + G P G + G
Sbjct: 492 IGFPGPKGPTGD----------PGK-NGDKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQ 540
Query: 59 GATGDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSA 118
G G+ P PP P E K ++ F L G + R + G+S A
Sbjct: 541 GGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGER-GLHGEFGLPGPAGPRGERGPPGESGA 599
Query: 119 SSPTEEEQEQGEIGACSDEGTAQE-------GKAAATPESQEPQAKGAEASAASEEEAG 170
+ PT +G G +G E G A + S P +GA + E G
Sbjct: 600 AGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGKGEKG 658
Score = 32.0 bits (71), Expect = 0.34
Identities = 40/154 (25%), Positives = 45/154 (29%), Gaps = 24/154 (15%)
Query: 38 GDLSPKGEGESPPVNGTDEAAGATGDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFK-- 95
GD P+GE P G D G TG P PP PP ++ K
Sbjct: 36 GDRGPRGERGPPGPPGRDGEDGPTGPPGPPGPPG---------PPGLGGNFAAQYDGKGV 86
Query: 96 ----KPFKLSGLSFKRNRKEGGGDSSASSPTEEEQEQGEIGACSDEGTA-QEGKAAATPE 150
P L G G P E E G+ G G A GKA
Sbjct: 87 GLGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGH 146
Query: 151 SQEPQAKGAEASAASEEEAGPQATE--PSTPSGP 182
+P G GPQ P TP P
Sbjct: 147 PGKPGRPGERG------VVGPQGARGFPGTPGLP 174
Score = 29.3 bits (64), Expect = 2.2
Identities = 48/194 (24%), Positives = 60/194 (30%), Gaps = 19/194 (9%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGAT 61
G++ RG V A AGA + + G G P G +P G A G
Sbjct: 214 GARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNA 273
Query: 62 GDAIEPAPPSQGA--EAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSAS 119
G A P + G V P P K L G++ G
Sbjct: 274 GPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVA---------GAPGLP 324
Query: 120 SPTEEEQEQGEIGACSDEGTAQE-GKAAATPESQEPQAKGAEASAASEEEAGPQATE--- 175
P G GA G E G A + ES KG SA + GP E
Sbjct: 325 GPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGN---KGEPGSAGPQGPPGPSGEEGKR 381
Query: 176 -PSTPSGPESGPTP 188
P+ +G P P
Sbjct: 382 GPNGEAGSAGPPGP 395
Score = 28.1 bits (61), Expect = 4.9
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 1 MGSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGA 60
+G+ + RG V AG+ N E G G P GE NG +AG
Sbjct: 333 VGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGP 392
Query: 61 TG-DAIEPAPPSQG 73
G + +P S+G
Sbjct: 393 PGPPGLRGSPGSRG 406
>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
Length = 1020
Score = 45.4 bits (106), Expect = 3e-05
Identities = 40/192 (20%), Positives = 68/192 (35%), Gaps = 7/192 (3%)
Query: 4 QSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGATGD 63
+ +K+P + E+ SPA+ E + + E +SP + A
Sbjct: 556 EEAKSPPEAKSPEKEEAKSPAEVKSPEKAKSPAKEEAKSPAEAKSPEKAKSPVKEEAKSP 615
Query: 64 AIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASSPTE 123
A +P + A++ EV E K K K P K ++E A SP +
Sbjct: 616 AEAKSPVKEEAKSPAEVKSPEKAKSPTKEEAKSPEKAK----SPEKEEAKSPEKAKSPVK 671
Query: 124 EEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEEAGPQATE---PSTPS 180
E + E + A+ + A +P +E ++ S EE P+ +
Sbjct: 672 AEAKSPEKAKSPVKAEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAK 731
Query: 181 GPESGPTPASAE 192
PE +P E
Sbjct: 732 TPEKAKSPVKEE 743
Score = 45.4 bits (106), Expect = 3e-05
Identities = 49/189 (25%), Positives = 74/189 (39%), Gaps = 15/189 (7%)
Query: 16 EEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGA----TGDAIEPAP-- 69
EEA AK+ +E K E +SP + E A + +A PA
Sbjct: 714 EEAKSPEKAKSPVKEEAKTPEKAKSPVKEEAKSPEKAKSPEKAKTLDVKSPEAKTPAKEE 773
Query: 70 ---PSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASSPTEEEQ 126
P+ K + P KE K +K K P K K KE SP +EE+
Sbjct: 774 ARSPADKFPEKAKSPVKEEVKSPEKA--KSPLKEDA---KAPEKEIPKKEEVKSPVKEEE 828
Query: 127 EQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEEAGPQATEPSTPSGPESGP 186
+ E+ A+E KA ATP+++E + E A +E P+ E P+ +
Sbjct: 829 KPQEVKVKEPPKKAEEEKAPATPKTEEKKDSKKE-EAPKKEAPKPKVEEKKEPAVEKPKE 887
Query: 187 TPASAEQNE 195
+ A++ E
Sbjct: 888 SKVEAKKEE 896
Score = 42.4 bits (98), Expect = 3e-04
Identities = 42/196 (21%), Positives = 70/196 (35%), Gaps = 9/196 (4%)
Query: 4 QSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGATGD 63
+ +K+P + E+ SPA+ E + + E +SP A
Sbjct: 522 EEAKSPAEAKSPEKEEAKSPAEVKSPEKAKSPAKEEAKSPPEAKSPEKEEAKSPAEVKSP 581
Query: 64 AIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSG--LSFKRNRKEGGGDSSASSP 121
+P + A++ E E K K K P + ++ E A SP
Sbjct: 582 EKAKSPAKEEAKSPAEAKSPEKAKSPVKEEAKSPAEAKSPVKEEAKSPAEVKSPEKAKSP 641
Query: 122 TEEEQEQGEIGACSDEGTAQEGKAAATP-----ESQEPQAKGAEASAASEEEAGPQATEP 176
T+EE + E ++ A+ + A +P +S E +A A S E+A E
Sbjct: 642 TKEEAKSPEKAKSPEKEEAKSPEKAKSPVKAEAKSPEKAKSPVKAEAKSPEKAKSPVKEE 701
Query: 177 STPSGPESGPTPASAE 192
+ PE +P E
Sbjct: 702 A--KSPEKAKSPVKEE 715
Score = 40.8 bits (94), Expect = 7e-04
Identities = 43/201 (21%), Positives = 76/201 (37%), Gaps = 20/201 (9%)
Query: 6 SKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGATGDAI 65
+K+P + + SPA+A KS ++ + +SP T E A + A
Sbjct: 598 AKSPEKAKSPVKEEAKSPAEAKSPVKEEAKSPAEVKSPEKAKSP----TKEEAKSPEKAK 653
Query: 66 EPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNR----KEGGGDSSASSP 121
P + K + P K K +K K P K S ++ + +E A SP
Sbjct: 654 SPEKEEAKSPEKAKSPVKAEAKSPEKA--KSPVKAEAKSPEKAKSPVKEEAKSPEKAKSP 711
Query: 122 TEEE---QEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEEAGPQATEPST 178
+EE E+ + + T ++ K+ E++ P+ + A + + P+A P+
Sbjct: 712 VKEEAKSPEKAKSPVKEEAKTPEKAKSPVKEEAKSPEKAKSPEKAKTLDVKSPEAKTPAK 771
Query: 179 PSG-------PESGPTPASAE 192
PE +P E
Sbjct: 772 EEARSPADKFPEKAKSPVKEE 792
Score = 40.4 bits (93), Expect = 0.001
Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 18/188 (9%)
Query: 12 DVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGATGDAIEPAPPS 71
+VT EE A + +E G + + E +SPP +EAA +A P
Sbjct: 469 EVTEEEEKEAKEEEGKEEEGGEEEEAE--GGEEETKSPPA---EEAASPEKEAKSPVKEE 523
Query: 72 QGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASSPTEEEQEQGEI 131
+ A+ + P KE + K K P K + ++E A SP +EE +
Sbjct: 524 AKSPAEAKSPEKE--EAKSPAEVKSPEKAKSPA----KEEAKSPPEAKSPEKEEAKSPAE 577
Query: 132 GACSDEGTA---QEGKAAATPESQE----PQAKGAEASAASEEEAGPQATEPSTPSGPES 184
++ + +E K+ A +S E P + A++ A ++ +A P+ PE
Sbjct: 578 VKSPEKAKSPAKEEAKSPAEAKSPEKAKSPVKEEAKSPAEAKSPVKEEAKSPAEVKSPEK 637
Query: 185 GPTPASAE 192
+P E
Sbjct: 638 AKSPTKEE 645
Score = 38.9 bits (89), Expect = 0.003
Identities = 50/205 (24%), Positives = 78/205 (38%), Gaps = 21/205 (10%)
Query: 4 QSSKAPRGDVTAEEAAGASPAK--ANGQENGHVKSNGDLSPKGEGESP--------PVNG 53
+ +K+P + SP K A E K SP E E P P
Sbjct: 783 EKAKSPVKEEVKSPEKAKSPLKEDAKAPEKEIPKKEEVKSPVKEEEKPQEVKVKEPPKKA 842
Query: 54 TDEAAGATGDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGG 113
+E A AT P + K E P KE PK K + K+P K K+
Sbjct: 843 EEEKAPAT-----PKTEEKKDSKKEEAPKKEAPKPKVEEK-KEPAVEKPKESKVEAKKEE 896
Query: 114 GDSSASSPTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEEAGPQA 173
+ PT E++ ++ ++ +E A E + +AK + A ++EA P+
Sbjct: 897 AEDKKKVPTPEKEAPAKV-EVKEDAKPKEKTEVAKKEPDDAKAK-EPSKPAEKKEAAPEK 954
Query: 174 --TEPSTPSGPESGP-TPASAEQNE 195
T+ PE P T A A++++
Sbjct: 955 KDTKEEKAKKPEEKPKTEAKAKEDD 979
Score = 37.0 bits (84), Expect = 0.011
Identities = 45/184 (24%), Positives = 73/184 (39%), Gaps = 26/184 (14%)
Query: 16 EEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAA-------------GATG 62
EE A A+P ++ S + +PK E P V E A
Sbjct: 844 EEKAPATPKTEEKKD-----SKKEEAPKKEAPKPKVEEKKEPAVEKPKESKVEAKKEEAE 898
Query: 63 DAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKP--FKLSGLSFKRNRKEGGGDSSASS 120
D + P + A AK EV PK+K + + K+P K S +KE +
Sbjct: 899 DKKKVPTPEKEAPAKVEVKEDAKPKEKTEVAKKEPDDAKAKEPSKPAEKKEAAPEKK--- 955
Query: 121 PTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEEAG---PQATEPS 177
T+EE+ + E A+E + E +P+A+ AE S++++++ +ATE
Sbjct: 956 DTKEEKAKKPEEKPKTEAKAKEDDKTLSKEPSKPKAEKAEKSSSTDQKDSKPPEKATEDK 1015
Query: 178 TPSG 181
G
Sbjct: 1016 AAKG 1019
Score = 33.1 bits (74), Expect = 0.15
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 122 TEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKG--AEASAASEEEA----GPQATE 175
TEE E+ E A +EG +EG E E + K AE +A+ E+EA +A
Sbjct: 467 TEEVTEEEEKEAKEEEGKEEEGGEEEEAEGGEEETKSPPAEEAASPEKEAKSPVKEEAKS 526
Query: 176 PSTPSGPESGPTPASAE 192
P+ PE + AE
Sbjct: 527 PAEAKSPEKEEAKSPAE 543
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 45.1 bits (105), Expect = 4e-05
Identities = 44/180 (24%), Positives = 61/180 (33%), Gaps = 20/180 (11%)
Query: 23 PAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGATGDAIEP-APPSQGAEAKGEVP 81
P K G KS SP G+ + PP G ++ G +P PP QG P
Sbjct: 95 PGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPP 154
Query: 82 PKETPK-------KKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASSPTEEEQEQG--EIG 132
P P+ K + S P K G GG+ P + QG G
Sbjct: 155 PPGKPQGPPPQGDNKSRSSRSPPGKPQG------PPPQGGNQPQGPPPPPGKPQGPPPQG 208
Query: 133 ACSDEGTAQEGKAAATPESQEPQAKGAEASAASEE----EAGPQATEPSTPSGPESGPTP 188
+G GK P + +++ A + + + G Q P P G GP P
Sbjct: 209 GNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPP 268
Score = 44.7 bits (104), Expect = 5e-05
Identities = 45/199 (22%), Positives = 69/199 (34%), Gaps = 8/199 (4%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQE-NGHVKSNGDLSPKGEGESPPVNGTDEAAGA 60
G P+GD ++A + P K G G + G P G+ + PP G ++ G
Sbjct: 219 GKPQGPPPQGD-NKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGP 277
Query: 61 TGDAIEPAPPSQ-GAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSAS 119
PP Q G++++ P P+ +P K G +
Sbjct: 278 PPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQ 337
Query: 120 SPTEEEQEQG---EIGACSDEGTAQEGKAAATP--ESQEPQAKGAEASAASEEEAGPQAT 174
P + QG + G+ S + GK P E PQ A ++ P A
Sbjct: 338 GPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAG 397
Query: 175 EPSTPSGPESGPTPASAEQ 193
+P P P G P+ Q
Sbjct: 398 QPQGPPRPPQGGRPSRPPQ 416
Score = 44.3 bits (103), Expect = 7e-05
Identities = 50/186 (26%), Positives = 64/186 (34%), Gaps = 26/186 (13%)
Query: 23 PAKANGQE-NGHVKSNGDLSPKGEGESPPVNGTDEAAGATGDAIEP-APPSQGAEAKGEV 80
P K G G KS SP G+ + PP G ++ G +P PP QG
Sbjct: 218 PGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGP 277
Query: 81 PPKETPK-------KKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASSPTEEEQEQGEI-- 131
PP P+ K + S P K G GG+ P + QG
Sbjct: 278 PPPGKPQGPPPQGGSKSRSSRSPPGKPQG------PPPQGGNQPQGPPPPPGKPQGPPPQ 331
Query: 132 GACSDEGTAQEGKAAATPESQEPQAKGAEASAASE--EEAGPQATEPSTPSGPESGPTPA 189
G +G GK P+ PQ SA S + GP E + P GP P PA
Sbjct: 332 GGNKPQGPPPPGK----PQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGP---PPPA 384
Query: 190 SAEQNE 195
+
Sbjct: 385 GGNPQQ 390
Score = 37.0 bits (84), Expect = 0.011
Identities = 45/195 (23%), Positives = 69/195 (35%), Gaps = 28/195 (14%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQE-NGHVKSNGDLSPKGEGESPPVNGTDEAAGA 60
G P+GD ++ + P K G G + G P G+ + PP G ++ G
Sbjct: 157 GKPQGPPPQGD-NKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQG- 214
Query: 61 TGDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASS 120
P PP K + PP + K + + P K G GG+
Sbjct: 215 ------PPPP-----GKPQGPPPQGDNKSQS-ARSPPGKPQG------PPPQGGNQPQGP 256
Query: 121 PTEEEQEQG--EIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEEAGPQATEPST 178
P + QG G +G GK P+ PQ G+++ ++ PQ P
Sbjct: 257 PPPPGKPQGPPPQGGNKPQGPPPPGK----PQGPPPQG-GSKSRSSRSPPGKPQGPPPQG 311
Query: 179 PSGPESGPTPASAEQ 193
+ P+ P P Q
Sbjct: 312 GNQPQGPPPPPGKPQ 326
Score = 36.6 bits (83), Expect = 0.014
Identities = 39/194 (20%), Positives = 64/194 (32%), Gaps = 28/194 (14%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQE-NGHVKSNGDLSPKGEGESPPVNGTDEAAGA 60
G+ P+G + + P K G G + G P G+ + PP G ++ G
Sbjct: 34 GNPQGAPPQGG-NKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGP 92
Query: 61 TGDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASS 120
PP QG +++ P+ P K + GG+
Sbjct: 93 PPPGKPQGPPPQGDKSRS---PRSPPGK-----------------PQGPPPQGGNQPQGP 132
Query: 121 PTEEEQEQG--EIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEE----EAGPQAT 174
P + QG G +G GK P + +++ + + + + G Q
Sbjct: 133 PPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQ 192
Query: 175 EPSTPSGPESGPTP 188
P P G GP P
Sbjct: 193 GPPPPPGKPQGPPP 206
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 45.1 bits (105), Expect = 4e-05
Identities = 47/197 (23%), Positives = 66/197 (33%), Gaps = 26/197 (13%)
Query: 23 PAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGATGDAIEP-APPSQGAEAKGEVP 81
P K G KS SP G+ + PP G ++ G +P PP QG + P
Sbjct: 135 PGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPP 194
Query: 82 PKETPK------KKKKFSFKKPFKLSGLSFKRNRKEGG--------------GDSSASSP 121
P P+ K + S P K G + + G G + P
Sbjct: 195 PPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGP 254
Query: 122 TEEEQEQG---EIGACSDEGTAQEGKAAATP--ESQEPQAKGAEASAASEEEAGPQATEP 176
+ QG + G+ S + GK P E PQ A ++ P A +P
Sbjct: 255 PPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQP 314
Query: 177 STPSGPESGPTPASAEQ 193
P P G P+ Q
Sbjct: 315 QGPPRPPQGGRPSRPPQ 331
Score = 40.4 bits (93), Expect = 0.001
Identities = 38/183 (20%), Positives = 60/183 (32%), Gaps = 16/183 (8%)
Query: 12 DVTAEEAAGASPAKANGQE-NGHVKSNGDLSPKGEGESPPVNGTDEAAGATGDAIEPAPP 70
DV+ EE+ G G K G P G+ + PP G ++ G PP
Sbjct: 22 DVSQEESPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPP 81
Query: 71 SQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASSPTEEEQEQGE 130
QG +++ P P+ +P + G P + QG
Sbjct: 82 PQGDKSRSPRSPPGKPQGPPPQGGNQP---------QGPPPPPGKPQGPPPQGGNRPQGP 132
Query: 131 IGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEEAGPQATEPSTPSGPESGPTPAS 190
+G +G + +P S + +G + G Q P P G GP P
Sbjct: 133 PPPGKPQGPPPQGDKSRSPRSPPGKPQG------PPPQGGNQPQGPPPPPGKPQGPPPQG 186
Query: 191 AEQ 193
++
Sbjct: 187 GKK 189
>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
preproprotein [Homo sapiens]
Length = 198
Score = 44.7 bits (104), Expect = 5e-05
Identities = 42/185 (22%), Positives = 63/185 (34%), Gaps = 11/185 (5%)
Query: 12 DVTAEEAAGASPAKANGQE-NGHVKSNGDLSPKGEGESPPVNGTDEAAGATGDAIEPAPP 70
DV+ EE+ G G K G P G+ + PP G ++ G PP
Sbjct: 22 DVSQEESPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPP 81
Query: 71 SQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASSPTEEEQEQGE 130
QG +++ P+ P K + P G + G P + + +
Sbjct: 82 PQGDKSRS---PRSPPGKP-----QGPPPQGGKPQGPPPQGGNKPQGPPPPGKPQGPPAQ 133
Query: 131 IGACSDEGTAQEGKAAATP--ESQEPQAKGAEASAASEEEAGPQATEPSTPSGPESGPTP 188
G+ S + GK P E PQ A ++ P A +P P P G P
Sbjct: 134 GGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGGRP 193
Query: 189 ASAEQ 193
+ Q
Sbjct: 194 SRPPQ 198
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 43.9 bits (102), Expect = 9e-05
Identities = 54/209 (25%), Positives = 68/209 (32%), Gaps = 22/209 (10%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGAT 61
G PRG A G + N E G +G + P+G P G D AG
Sbjct: 201 GPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKP 260
Query: 62 GDAIEPAPPS-QGAEAKGEVPPKETPKKKKKFSFKKPFK-LSGLSFKRNRKEGGGDSSAS 119
G A E PP QGA P K + + K +G + G++ +
Sbjct: 261 GKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSP 320
Query: 120 SP------TEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQ-------AKGAEASAASE 166
P E G GA G + A P P A GA+ A
Sbjct: 321 GPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPT 380
Query: 167 EEAGPQAT-----EPSTPSGPESGPTPAS 190
GP+ EP TP P GP AS
Sbjct: 381 GARGPEGAQGPRGEPGTPGSP--GPAGAS 407
Score = 38.9 bits (89), Expect = 0.003
Identities = 49/204 (24%), Positives = 66/204 (32%), Gaps = 21/204 (10%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGAT 61
G + G+ A G + E G + G P+G +P +G A+G
Sbjct: 678 GKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPA 737
Query: 62 GDAIEPAPPS-QGAEAK----------------GEVPPKETPKKKKKFSFKKPFKLSGLS 104
G PP QG + GE P+ P K P G +
Sbjct: 738 GPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPA 797
Query: 105 FKRNRKEGGGDSSASSPTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAA 164
K G + GE G G A G A +P AKG + A
Sbjct: 798 GANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPA--GFAGPPGADGQPGAKGEQGEAG 855
Query: 165 SEEEAG-PQATEPSTPSGPESGPT 187
+ +AG P PS GP+ GPT
Sbjct: 856 QKGDAGAPGPQGPSGAPGPQ-GPT 878
Score = 38.1 bits (87), Expect = 0.005
Identities = 46/189 (24%), Positives = 58/189 (30%), Gaps = 15/189 (7%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGAT 61
G+ K G +AGA A E G G P G P G AG
Sbjct: 798 GANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQK 857
Query: 62 GDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKP--FKLSGLSFKRNRKEGGGDSSAS 119
GDA P P + P T K + + P G + + G+
Sbjct: 858 GDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPP 917
Query: 120 SPTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEEAGPQATEPSTP 179
P + G GA D G G+A EP +G + E G P
Sbjct: 918 GPPGPSGKDGPKGARGDSG--PPGRAG------EPGLQGPAGPPGEKGEPGDDG-----P 964
Query: 180 SGPESGPTP 188
SG E P P
Sbjct: 965 SGAEGPPGP 973
Score = 33.9 bits (76), Expect = 0.090
Identities = 47/195 (24%), Positives = 65/195 (33%), Gaps = 24/195 (12%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGAT 61
G+ +G A AGA G + G L PKG+ P + G G
Sbjct: 411 GTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPK 470
Query: 62 GDAIEPAPPS-QGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGG-----GD 115
G EP P QGA P ++ K+ + +P + + R G G
Sbjct: 471 G---EPGPAGPQGA-------PGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQ 520
Query: 116 SSASSPTEEEQEQGEIGACSDEG-TAQEGKAAATPESQEPQAKGAEASAASEEEAGPQA- 173
+ P E+G G +G G+ EP GA +AGPQ
Sbjct: 521 DGLAGPKGAPGERGPSGLAGPKGANGDPGRPG------EPGLPGARGLTGRPGDAGPQGK 574
Query: 174 TEPSTPSGPESGPTP 188
PS G + P P
Sbjct: 575 VGPSGAPGEDGRPGP 589
Score = 32.3 bits (72), Expect = 0.26
Identities = 46/188 (24%), Positives = 58/188 (30%), Gaps = 31/188 (16%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGAT 61
G+ + P G V G PA G+E S G P G + V G GA
Sbjct: 1011 GASGDRGPPGPVGPPGLTG--PAGEPGREG----SPGADGPPGRDGAAGVKGDRGETGAV 1064
Query: 62 GDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASSP 121
G P PP + G P +G R G S P
Sbjct: 1065 GAPGAPGPPG----SPGPAGP------------------TGKQGDRGEAGAQGPMGPSGP 1102
Query: 122 TEEEQEQGEIGACSDEGTAQE-GKAAATPESQEPQAKGAEASAASEEEAGPQATEPSTPS 180
QG G D+G A E G+ +G + G A+ P+ PS
Sbjct: 1103 AGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQG--ASGPAGPS 1160
Query: 181 GPESGPTP 188
GP P P
Sbjct: 1161 GPRGPPGP 1168
Score = 32.0 bits (71), Expect = 0.34
Identities = 50/195 (25%), Positives = 60/195 (30%), Gaps = 30/195 (15%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGAT 61
G K RGD AG + G GD P G E PP G AG
Sbjct: 924 GKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSG-AEGPP--GPQGLAGQR 980
Query: 62 GDAIEPAPPSQGAEAKGEVP-PKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASS 120
G I P +G +P P P K+ G S R G +
Sbjct: 981 G--IVGLPGQRGERGFPGLPGPSGEPGKQ---------GAPGASGDRGPPGPVGPPGLTG 1029
Query: 121 PTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEEAGPQ-------- 172
P E +G GA D ++G A + E A GA + GP
Sbjct: 1030 PAGEPGREGSPGA--DGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGD 1087
Query: 173 -----ATEPSTPSGP 182
A P PSGP
Sbjct: 1088 RGEAGAQGPMGPSGP 1102
Score = 31.6 bits (70), Expect = 0.45
Identities = 48/205 (23%), Positives = 64/205 (31%), Gaps = 22/205 (10%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGAT 61
G P G GA AK G G P+GE +P G A+G
Sbjct: 351 GPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNP 410
Query: 62 G-DAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASS 120
G D I A S GA P P + P G + K G+ +
Sbjct: 411 GTDGIPGAKGSAGAPGIAGAPGFPGP--------RGPPGPQGATGPLGPKGQTGEPGIAG 462
Query: 121 PTEEEQEQGEIGACSDEG----TAQEGKAAATPE---------SQEPQAKGAEASAASEE 167
E+ +GE G +G +EGK A E E A G +
Sbjct: 463 FKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDG 522
Query: 168 EAGPQATEPSTPSGPESGPTPASAE 192
AGP+ +GP A+ +
Sbjct: 523 LAGPKGAPGERGPSGLAGPKGANGD 547
Score = 29.3 bits (64), Expect = 2.2
Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGAT 61
G + K GD+ ++ G G GD KGE +P G D G
Sbjct: 101 GPKGQKGEPGDI--KDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTP 158
Query: 62 GDAIEPAPP 70
G+ P PP
Sbjct: 159 GNPGPPGPP 167
Score = 29.3 bits (64), Expect = 2.2
Identities = 41/158 (25%), Positives = 53/158 (33%), Gaps = 9/158 (5%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGAT 61
G + PRGD + GA + E G + G P G PP G + AA
Sbjct: 126 GPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGP-PGPPGLGGNFAAQMA 184
Query: 62 GDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASSP 121
G E A +Q +G + P P F+ N E G+ S P
Sbjct: 185 GGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGP-----QGFQGNPGE-PGEPGVSGP 238
Query: 122 TEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGA 159
G G D+G A GK E P +GA
Sbjct: 239 MGPRGPPGPPGKPGDDGEA--GKPGKAGERGPPGPQGA 274
Score = 27.3 bits (59), Expect = 8.4
Identities = 36/187 (19%), Positives = 57/187 (30%), Gaps = 15/187 (8%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGAT 61
G + + G + GA + ++G + G P G G +G
Sbjct: 606 GPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQ 665
Query: 62 GDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASSP 121
G P PP +G + + P E GL R + G+ +
Sbjct: 666 GLPGPPGPPGEGGKPGDQGVPGEA-------------GAPGLVGPRGERGFPGERGSPGA 712
Query: 122 TEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQA-KGAEASAASEEEAGPQATEPST-P 179
+ +G G +G A P +Q P +G + AGP+
Sbjct: 713 QGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGE 772
Query: 180 SGPESGP 186
GPE P
Sbjct: 773 KGPEGAP 779
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 43.9 bits (102), Expect = 9e-05
Identities = 54/209 (25%), Positives = 68/209 (32%), Gaps = 22/209 (10%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGAT 61
G PRG A G + N E G +G + P+G P G D AG
Sbjct: 132 GPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKP 191
Query: 62 GDAIEPAPPS-QGAEAKGEVPPKETPKKKKKFSFKKPFK-LSGLSFKRNRKEGGGDSSAS 119
G A E PP QGA P K + + K +G + G++ +
Sbjct: 192 GKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSP 251
Query: 120 SP------TEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQ-------AKGAEASAASE 166
P E G GA G + A P P A GA+ A
Sbjct: 252 GPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPT 311
Query: 167 EEAGPQAT-----EPSTPSGPESGPTPAS 190
GP+ EP TP P GP AS
Sbjct: 312 GARGPEGAQGPRGEPGTPGSP--GPAGAS 338
Score = 38.9 bits (89), Expect = 0.003
Identities = 49/204 (24%), Positives = 66/204 (32%), Gaps = 21/204 (10%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGAT 61
G + G+ A G + E G + G P+G +P +G A+G
Sbjct: 609 GKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPA 668
Query: 62 GDAIEPAPPS-QGAEAK----------------GEVPPKETPKKKKKFSFKKPFKLSGLS 104
G PP QG + GE P+ P K P G +
Sbjct: 669 GPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPA 728
Query: 105 FKRNRKEGGGDSSASSPTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAA 164
K G + GE G G A G A +P AKG + A
Sbjct: 729 GANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPA--GFAGPPGADGQPGAKGEQGEAG 786
Query: 165 SEEEAG-PQATEPSTPSGPESGPT 187
+ +AG P PS GP+ GPT
Sbjct: 787 QKGDAGAPGPQGPSGAPGPQ-GPT 809
Score = 38.1 bits (87), Expect = 0.005
Identities = 46/189 (24%), Positives = 58/189 (30%), Gaps = 15/189 (7%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGAT 61
G+ K G +AGA A E G G P G P G AG
Sbjct: 729 GANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQK 788
Query: 62 GDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKP--FKLSGLSFKRNRKEGGGDSSAS 119
GDA P P + P T K + + P G + + G+
Sbjct: 789 GDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPP 848
Query: 120 SPTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEEAGPQATEPSTP 179
P + G GA D G G+A EP +G + E G P
Sbjct: 849 GPPGPSGKDGPKGARGDSG--PPGRAG------EPGLQGPAGPPGEKGEPGDDG-----P 895
Query: 180 SGPESGPTP 188
SG E P P
Sbjct: 896 SGAEGPPGP 904
Score = 33.9 bits (76), Expect = 0.090
Identities = 47/195 (24%), Positives = 65/195 (33%), Gaps = 24/195 (12%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGAT 61
G+ +G A AGA G + G L PKG+ P + G G
Sbjct: 342 GTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPK 401
Query: 62 GDAIEPAPPS-QGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGG-----GD 115
G EP P QGA P ++ K+ + +P + + R G G
Sbjct: 402 G---EPGPAGPQGA-------PGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQ 451
Query: 116 SSASSPTEEEQEQGEIGACSDEG-TAQEGKAAATPESQEPQAKGAEASAASEEEAGPQA- 173
+ P E+G G +G G+ EP GA +AGPQ
Sbjct: 452 DGLAGPKGAPGERGPSGLAGPKGANGDPGRPG------EPGLPGARGLTGRPGDAGPQGK 505
Query: 174 TEPSTPSGPESGPTP 188
PS G + P P
Sbjct: 506 VGPSGAPGEDGRPGP 520
Score = 32.3 bits (72), Expect = 0.26
Identities = 46/188 (24%), Positives = 58/188 (30%), Gaps = 31/188 (16%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGAT 61
G+ + P G V G PA G+E S G P G + V G GA
Sbjct: 942 GASGDRGPPGPVGPPGLTG--PAGEPGREG----SPGADGPPGRDGAAGVKGDRGETGAV 995
Query: 62 GDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASSP 121
G P PP + G P +G R G S P
Sbjct: 996 GAPGAPGPPG----SPGPAGP------------------TGKQGDRGEAGAQGPMGPSGP 1033
Query: 122 TEEEQEQGEIGACSDEGTAQE-GKAAATPESQEPQAKGAEASAASEEEAGPQATEPSTPS 180
QG G D+G A E G+ +G + G A+ P+ PS
Sbjct: 1034 AGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQG--ASGPAGPS 1091
Query: 181 GPESGPTP 188
GP P P
Sbjct: 1092 GPRGPPGP 1099
Score = 32.0 bits (71), Expect = 0.34
Identities = 50/195 (25%), Positives = 60/195 (30%), Gaps = 30/195 (15%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGAT 61
G K RGD AG + G GD P G E PP G AG
Sbjct: 855 GKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSG-AEGPP--GPQGLAGQR 911
Query: 62 GDAIEPAPPSQGAEAKGEVP-PKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASS 120
G I P +G +P P P K+ G S R G +
Sbjct: 912 G--IVGLPGQRGERGFPGLPGPSGEPGKQ---------GAPGASGDRGPPGPVGPPGLTG 960
Query: 121 PTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEEAGPQ-------- 172
P E +G GA D ++G A + E A GA + GP
Sbjct: 961 PAGEPGREGSPGA--DGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGD 1018
Query: 173 -----ATEPSTPSGP 182
A P PSGP
Sbjct: 1019 RGEAGAQGPMGPSGP 1033
Score = 31.6 bits (70), Expect = 0.45
Identities = 48/205 (23%), Positives = 64/205 (31%), Gaps = 22/205 (10%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGAT 61
G P G GA AK G G P+GE +P G A+G
Sbjct: 282 GPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNP 341
Query: 62 G-DAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASS 120
G D I A S GA P P + P G + K G+ +
Sbjct: 342 GTDGIPGAKGSAGAPGIAGAPGFPGP--------RGPPGPQGATGPLGPKGQTGEPGIAG 393
Query: 121 PTEEEQEQGEIGACSDEG----TAQEGKAAATPE---------SQEPQAKGAEASAASEE 167
E+ +GE G +G +EGK A E E A G +
Sbjct: 394 FKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDG 453
Query: 168 EAGPQATEPSTPSGPESGPTPASAE 192
AGP+ +GP A+ +
Sbjct: 454 LAGPKGAPGERGPSGLAGPKGANGD 478
Score = 29.3 bits (64), Expect = 2.2
Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGAT 61
G + K GD+ ++ G G GD KGE +P G D G
Sbjct: 32 GPKGQKGEPGDI--KDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTP 89
Query: 62 GDAIEPAPP 70
G+ P PP
Sbjct: 90 GNPGPPGPP 98
Score = 29.3 bits (64), Expect = 2.2
Identities = 41/158 (25%), Positives = 53/158 (33%), Gaps = 9/158 (5%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGAT 61
G + PRGD + GA + E G + G P G PP G + AA
Sbjct: 57 GPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGP-PGPPGLGGNFAAQMA 115
Query: 62 GDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASSP 121
G E A +Q +G + P P F+ N E G+ S P
Sbjct: 116 GGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGP-----QGFQGNPGE-PGEPGVSGP 169
Query: 122 TEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGA 159
G G D+G A GK E P +GA
Sbjct: 170 MGPRGPPGPPGKPGDDGEA--GKPGKAGERGPPGPQGA 205
Score = 27.3 bits (59), Expect = 8.4
Identities = 36/187 (19%), Positives = 57/187 (30%), Gaps = 15/187 (8%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGAT 61
G + + G + GA + ++G + G P G G +G
Sbjct: 537 GPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQ 596
Query: 62 GDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASSP 121
G P PP +G + + P E GL R + G+ +
Sbjct: 597 GLPGPPGPPGEGGKPGDQGVPGEA-------------GAPGLVGPRGERGFPGERGSPGA 643
Query: 122 TEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQA-KGAEASAASEEEAGPQATEPST-P 179
+ +G G +G A P +Q P +G + AGP+
Sbjct: 644 QGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGE 703
Query: 180 SGPESGP 186
GPE P
Sbjct: 704 KGPEGAP 710
>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 43.5 bits (101), Expect = 1e-04
Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 15/145 (10%)
Query: 45 EGESPPVNGTDEAAGATGDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLS 104
+G+S P + +G E + E + + PK +K+ LS +
Sbjct: 160 KGKSKPASDYLNFDSDSGQESEEEGAGEDLEEEASLEPKAAVQKE----------LSDMD 209
Query: 105 FKRNRKEGGGDSSASSPTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGA--EAS 162
+ +++ G SS+S EEE+ + E C + A+E ++ATP QE +KGA E
Sbjct: 210 YLKSKMVKAGSSSSS---EEEESEDEAVHCDEGSEAEEEDSSATPVLQERDSKGAGQEQG 266
Query: 163 AASEEEAGPQATEPSTPSGPESGPT 187
+ ++ P+A + + PT
Sbjct: 267 MPAGKKRPPEARAETEKPANQKEPT 291
>gi|226497654 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 43.5 bits (101), Expect = 1e-04
Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 15/145 (10%)
Query: 45 EGESPPVNGTDEAAGATGDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLS 104
+G+S P + +G E + E + + PK +K+ LS +
Sbjct: 160 KGKSKPASDYLNFDSDSGQESEEEGAGEDLEEEASLEPKAAVQKE----------LSDMD 209
Query: 105 FKRNRKEGGGDSSASSPTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGA--EAS 162
+ +++ G SS+S EEE+ + E C + A+E ++ATP QE +KGA E
Sbjct: 210 YLKSKMVKAGSSSSS---EEEESEDEAVHCDEGSEAEEEDSSATPVLQERDSKGAGQEQG 266
Query: 163 AASEEEAGPQATEPSTPSGPESGPT 187
+ ++ P+A + + PT
Sbjct: 267 MPAGKKRPPEARAETEKPANQKEPT 291
>gi|226497574 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 43.5 bits (101), Expect = 1e-04
Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 15/145 (10%)
Query: 45 EGESPPVNGTDEAAGATGDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLS 104
+G+S P + +G E + E + + PK +K+ LS +
Sbjct: 160 KGKSKPASDYLNFDSDSGQESEEEGAGEDLEEEASLEPKAAVQKE----------LSDMD 209
Query: 105 FKRNRKEGGGDSSASSPTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGA--EAS 162
+ +++ G SS+S EEE+ + E C + A+E ++ATP QE +KGA E
Sbjct: 210 YLKSKMVKAGSSSSS---EEEESEDEAVHCDEGSEAEEEDSSATPVLQERDSKGAGQEQG 266
Query: 163 AASEEEAGPQATEPSTPSGPESGPT 187
+ ++ P+A + + PT
Sbjct: 267 MPAGKKRPPEARAETEKPANQKEPT 291
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 43.5 bits (101), Expect = 1e-04
Identities = 38/168 (22%), Positives = 63/168 (37%), Gaps = 10/168 (5%)
Query: 11 GDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGATGDAIEPAPP 70
G+ E G + G+E + +GEGE G E G+ E
Sbjct: 895 GEEEEGEGEGEEEGEGEGEEEEGEGKGEEEGEEGEGEGEEEEGEGEGEDGEGEGEEEEGE 954
Query: 71 SQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSF-------KRNRKEGGGDSSASSPTE 123
+G E +GE +E + + + + + G + +EG G+ E
Sbjct: 955 WEGEEEEGEGEGEEEGEGEGEEGEGEGEEEEGEGEGEEEEGEEEGEEEGEGEEEGEGEGE 1014
Query: 124 EEQE---QGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEE 168
EE+E +GE+ EG +E + E +E + +G E EEE
Sbjct: 1015 EEEEGEVEGEVEGEEGEGEGEEEEGEEEGEEREKEGEGEENRRNREEE 1062
Score = 41.6 bits (96), Expect = 4e-04
Identities = 50/200 (25%), Positives = 67/200 (33%), Gaps = 22/200 (11%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGAT 61
G Q + + EE G + +E K K EGE V G E
Sbjct: 718 GHQKERNQEMEEGGEEEHGEGEEEEGDREEEEEKEG---EGKEEGEGEEVEGEREKEEGE 774
Query: 62 GDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASSP 121
E A G E KGE + ++++ + K G EGG
Sbjct: 775 RKKEERA----GKEEKGEEEGDQGEGEEEETEGRGEEKEEG-----GEVEGGEVEEGKGE 825
Query: 122 TEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKG------AEASAASEEEAGPQATE 175
EEE+E+GE EG +EG+ E +E + KG E EE G E
Sbjct: 826 REEEEEEGEGEEEEGEGEEEEGEG----EEEEGEGKGEEEGEEGEGEEEGEEGEGEGEEE 881
Query: 176 PSTPSGPESGPTPASAEQNE 195
G E G E+ E
Sbjct: 882 EGEGEGEEEGEGEGEEEEGE 901
Score = 41.2 bits (95), Expect = 6e-04
Identities = 42/194 (21%), Positives = 68/194 (35%), Gaps = 13/194 (6%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGAT 61
G + +G+ EE G + E + G+ +GEGE G E
Sbjct: 849 GEEEEGEGKGEEEGEEGEGEEEGEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGEG---- 904
Query: 62 GDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASSP 121
E +G E +GE +E ++ + ++ + G + +E G+
Sbjct: 905 ----EEEGEGEGEEEEGEGKGEEEGEEGEGEGEEEEGEGEGEDGEGEGEEEEGEWEG--- 957
Query: 122 TEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEEAGPQATEPSTPSG 181
EEE+ +GE G EG +EG+ E E + + E EEE +
Sbjct: 958 -EEEEGEGE-GEEEGEGEGEEGEGEGEEEEGEGEGEEEEGEEEGEEEGEGEEEGEGEGEE 1015
Query: 182 PESGPTPASAEQNE 195
E G E E
Sbjct: 1016 EEEGEVEGEVEGEE 1029
Score = 37.0 bits (84), Expect = 0.011
Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 4/136 (2%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGAT 61
G + G+ EE G + G+ G +GEGE G +E
Sbjct: 944 GEGEGEEEEGEWEGEEEEGEGEGEEEGEGEGEEGEGEGEEEEGEGEGEEEEGEEEGE-EE 1002
Query: 62 GDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASSP 121
G+ E E +GEV + ++ + ++ + G + KEG G+ + +
Sbjct: 1003 GEGEEEGEGEGEEEEEGEVEGEVEGEEGEGEGEEEEGEEEG---EEREKEGEGEENRRNR 1059
Query: 122 TEEEQEQGEIGACSDE 137
EEE+E+G+ +E
Sbjct: 1060 EEEEEEEGKYQETGEE 1075
Score = 29.6 bits (65), Expect = 1.7
Identities = 20/86 (23%), Positives = 33/86 (38%)
Query: 110 KEGGGDSSASSPTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEEA 169
KEG DS + E+E E E G ++ + + + + + +A + E E
Sbjct: 590 KEGAEDSKGNGIEEQEVEANEENVKVHGGRKEKTEILSDDLTDKAEVSEGKAKSVGEAED 649
Query: 170 GPQATEPSTPSGPESGPTPASAEQNE 195
GP+ T SG E+ E
Sbjct: 650 GPEGRGDGTCEEGSSGAEHWQDEERE 675
>gi|224458284 Rho GTPase activating protein 23 [Homo sapiens]
Length = 1397
Score = 43.1 bits (100), Expect = 1e-04
Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 10/153 (6%)
Query: 35 KSNGDLSPKGEGESPPVNGTDEAAGATGDAIEPAPPSQ------GAEAKGEVPPKETPKK 88
+ G+ +P G+ E V + G + P P A++KG PK+ P
Sbjct: 1007 EDKGERTPVGDKEPQAVPNIEYLLPNIGRTVPPGDPGSDSTTCSSAKSKGSWAPKKEPYA 1066
Query: 89 KKKFSFKKPFKLSGLSFKRNRKEGGGDSSASSPTEEEQEQGEIGACSDEGTAQEGKAAAT 148
++ + +S ++ KR ++ +S+ + EQE + GA + QE
Sbjct: 1067 REMLAISF---ISAVNRKRKKRREARGLGSSTDDDSEQEAHKPGAGATAPGTQERPQGPL 1123
Query: 149 PESQEPQAKGAEASAASEEEAGPQATEPSTPSG 181
P + P+A G + A+ EE P A S SG
Sbjct: 1124 PGAVAPEAPGRLSPPAAPEER-PAADTRSIVSG 1155
>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
sapiens]
Length = 699
Score = 42.7 bits (99), Expect = 2e-04
Identities = 49/224 (21%), Positives = 80/224 (35%), Gaps = 32/224 (14%)
Query: 3 SQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAG--- 59
S+ K P +A P E+ S+ D S E S P T ++
Sbjct: 333 SEEEKKPPTKAVVSKATTKPPPAKKAAESSSDSSDSDSSEDDEAPSKPAGTTKNSSNKPA 392
Query: 60 ------ATGDAIEPAPPSQGAE-----------AKGEVPPKETPKKKKKFSFKKPFKLSG 102
A A P P G + ++ E E K KK + KP +
Sbjct: 393 VTTKSPAVKPAAAPKQPVGGGQKLLTRKADSSSSEEESSSSEEEKTKKMVATTKPKATAK 452
Query: 103 LSFKRNRKE---GGGDSSA---SSPTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQA 156
+ K+ G DSS+ SS +EEE+E+ A + G AA + + +
Sbjct: 453 AALSLPAKQAPQGSRDSSSDSDSSSSEEEEEKTSKSAVKKKPQKVAGGAAPSKPASAKKG 512
Query: 157 KGAEASAASEEEAGPQATE------PSTPSGPESGPTPASAEQN 194
K ++++S +++ + E P P++ T A QN
Sbjct: 513 KAESSNSSSSDDSSEEEEEKLKGKGSPRPQAPKANGTSALTAQN 556
Score = 38.5 bits (88), Expect = 0.004
Identities = 51/220 (23%), Positives = 79/220 (35%), Gaps = 45/220 (20%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGAT 61
G+ + + + VT + A PA A Q G + L+ K + S + T
Sbjct: 382 GTTKNSSNKPAVTTKSPA-VKPAAAPKQPVGGGQKL--LTRKADSSSSEEESSSSEEEKT 438
Query: 62 GDAIEPAPPSQGAEAKGEVPPKETP--------------------KKKKKFSFKKPFKLS 101
+ P A+A +P K+ P K K KKP K++
Sbjct: 439 KKMVATTKPKATAKAALSLPAKQAPQGSRDSSSDSDSSSSEEEEEKTSKSAVKKKPQKVA 498
Query: 102 G-------LSFKRNRKEGGGDSSASSPTEEEQE----------QGEIGACSDEGTAQEGK 144
G S K+ + E SS+ +EEE+E Q + TAQ GK
Sbjct: 499 GGAAPSKPASAKKGKAESSNSSSSDDSSEEEEEKLKGKGSPRPQAPKANGTSALTAQNGK 558
Query: 145 AAATPESQEPQAKGA-----EASAASEEEAGPQATEPSTP 179
AA E +E + K A ++ + + + A E TP
Sbjct: 559 AAKNSEEEEEEKKKAAVVVSKSGSLKKRKQNEAAKEAETP 598
Score = 36.2 bits (82), Expect = 0.018
Identities = 52/216 (24%), Positives = 80/216 (37%), Gaps = 32/216 (14%)
Query: 3 SQSSKAPRGDVTAEEAAGAS-PAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGAT 61
S+ S +V A A+ PAK G G + S E S + D+
Sbjct: 87 SEDSSEEEEEVQGPPAKKAAVPAKRVGLPPGKAAAKASESSSSEESSDDDDEEDQKKQPV 146
Query: 62 GDAIEP------APPSQGAEAKGEVPPK---ETPKKKK--------KFSFKKPFKLSGLS 104
++P APP + + + E PK +K K K P K + +
Sbjct: 147 QKGVKPQAKAAKAPPKKAKSSDSDSDSSSEDEPPKNQKPKITPVTVKAQTKAPPKPARAA 206
Query: 105 FK-RNRKEGGGDSSASSPTEEEQEQGEIGACSDEGTAQEG--------KAAATPESQEPQ 155
K N K SS+SS + + + E A + + T + KAA TP +
Sbjct: 207 PKIANGKAASSSSSSSSSSSSDDSEEEKAAATPKKTVPKKQVVAKAPVKAATTPTRKSSS 266
Query: 156 AKGAEASAASEEEAGPQATEPSTPSGPESGPTPASA 191
++ + +S EE+ P +P GP S P SA
Sbjct: 267 SEDS-SSDEEEEQKKPMKNKP----GPYSSVPPPSA 297
Score = 27.7 bits (60), Expect = 6.5
Identities = 40/157 (25%), Positives = 60/157 (38%), Gaps = 23/157 (14%)
Query: 17 EAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGT-----DEAAGATGDAIEPAPPS 71
+AA + PAK Q + S+ D S E E + AG A PS
Sbjct: 452 KAALSLPAKQAPQGSRDSSSDSDSSSSEEEEEKTSKSAVKKKPQKVAGG-------AAPS 504
Query: 72 QGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNR--KEGG--------GDSSASSP 121
+ A AK S ++ KL G R + K G G ++ +S
Sbjct: 505 KPASAKKGKAESSNSSSSDDSSEEEEEKLKGKGSPRPQAPKANGTSALTAQNGKAAKNSE 564
Query: 122 TEEEQEQGEIGACSDEGTAQEGKA-AATPESQEPQAK 157
EEE+++ S G+ ++ K A E++ PQAK
Sbjct: 565 EEEEEKKKAAVVVSKSGSLKKRKQNEAAKEAETPQAK 601
>gi|27894378 chloride intracellular channel 6 [Homo sapiens]
Length = 686
Score = 42.7 bits (99), Expect = 2e-04
Identities = 44/186 (23%), Positives = 71/186 (38%), Gaps = 9/186 (4%)
Query: 3 SQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGATG 62
S ++ P GD E +A G V + G + + E P + D A G G
Sbjct: 189 SVDAEGPAGDSVDAEGPLGDNIQAEGPAGDSVDAEGRVGDSVDAEGPAGDSVD-AEGRVG 247
Query: 63 DAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASSPT 122
D++E P+ G + VP ++ + + G + + R G S
Sbjct: 248 DSVEAGDPA-GDGVEAGVPAGDSVEAEGPAG--DSMDAEGPAGRARRVSGEPQQSGDGSL 304
Query: 123 EEEQEQGEIGACSDEGTAQEGKAA--ATPESQEPQAKGAEASAASEEEAGPQATEPSTPS 180
+ E E+ A G + G+ A A E++ P KG+E +A + A A E
Sbjct: 305 SPQAEAIEVAAGESAGRS-PGELAWDAAEEAEVPGVKGSEEAAPGDARA--DAGEDRVGD 361
Query: 181 GPESGP 186
GP+ P
Sbjct: 362 GPQQEP 367
Score = 39.7 bits (91), Expect = 0.002
Identities = 41/182 (22%), Positives = 58/182 (31%), Gaps = 16/182 (8%)
Query: 9 PRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGATGDAIEPA 68
P GD E A G + +G+ G+G P E A P
Sbjct: 265 PAGDSVEAEGPAGDSMDAEGPAGRARRVSGEPQQSGDGSLSPQAEAIEVAAGESAGRSPG 324
Query: 69 PPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASSPTEEEQEQ 128
+ A + EVP + ++ R + G D P +E E
Sbjct: 325 ELAWDAAEEAEVPGVKGSEEAAPGD--------------ARADAGEDRVGDGPQQEPGED 370
Query: 129 GEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEEAGPQATEPSTPSGPESGPTP 188
E S EG +E A ES + G + A+E EA Q + GP G
Sbjct: 371 EERRERSPEGPREEEAAGGEEESPDSSPHGEASRGAAEPEA--QLSNHLAEEGPAEGSGE 428
Query: 189 AS 190
A+
Sbjct: 429 AA 430
Score = 37.0 bits (84), Expect = 0.011
Identities = 44/219 (20%), Positives = 73/219 (33%), Gaps = 47/219 (21%)
Query: 3 SQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESP---------PVNG 53
S ++ P GD E +A G+ V + G + E P P
Sbjct: 159 SVDAEGPLGDNIEAEGPAGDSVEAEGRVGDSVDAEGPAGDSVDAEGPLGDNIQAEGPAGD 218
Query: 54 TDEAAGATGDAIE-PAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEG 112
+ +A G GD+++ P +A+G V G S + G
Sbjct: 219 SVDAEGRVGDSVDAEGPAGDSVDAEGRV---------------------GDSVEAGDPAG 257
Query: 113 GGDSSASSPTEEEQEQGEIGACSD-EGTA-----------QEGKAAATPESQEPQAKGAE 160
G + + + +G G D EG A Q G + +P+++ + E
Sbjct: 258 DGVEAGVPAGDSVEAEGPAGDSMDAEGPAGRARRVSGEPQQSGDGSLSPQAEAIEVAAGE 317
Query: 161 ASAASEEE----AGPQATEPSTPSGPESGPTPASAEQNE 195
++ S E A +A P E+ P A A+ E
Sbjct: 318 SAGRSPGELAWDAAEEAEVPGVKGSEEAAPGDARADAGE 356
Score = 36.6 bits (83), Expect = 0.014
Identities = 49/185 (26%), Positives = 74/185 (40%), Gaps = 52/185 (28%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLS--PKGEGESPPVNGTDEAAG 59
GS S +A +V A E+AG SP G+L+ E E P V G++EAA
Sbjct: 302 GSLSPQAEAIEVAAGESAGRSP--------------GELAWDAAEEAEVPGVKGSEEAA- 346
Query: 60 ATGDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSAS 119
GDA A G + G+ P +E + +++ + S
Sbjct: 347 -PGDARADA----GEDRVGDGPQQEPGEDEER----------------------RERSPE 379
Query: 120 SPTEEEQEQGEIGACSDEGTAQEGKAAATPESQ-------EPQAKGA-EASAASEEEAGP 171
P EEE GE + + + AA PE+Q E A+G+ EA+ +
Sbjct: 380 GPREEEAAGGEEESPDSSPHGEASRGAAEPEAQLSNHLAEEGPAEGSGEAARVNGRREDG 439
Query: 172 QATEP 176
+A+EP
Sbjct: 440 EASEP 444
Score = 35.8 bits (81), Expect = 0.024
Identities = 45/202 (22%), Positives = 68/202 (33%), Gaps = 43/202 (21%)
Query: 4 QSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGATGD 63
+ S AP AE+ A+G+ V + G L E E P + EA G GD
Sbjct: 130 EDSAAPERQEEAEQRPEVPEGSASGEAGDSVDAEGPLGDNIEAEGPAGDSV-EAEGRVGD 188
Query: 64 AIEP-APPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASSPT 122
+++ P +A+G + G + A P
Sbjct: 189 SVDAEGPAGDSVDAEGPL--------------------------------GDNIQAEGPA 216
Query: 123 EEEQE-QGEIGACSD-EGTA-----QEGKAAATPESQEPQAKGAEAS--AASEEEAGPQA 173
+ + +G +G D EG A EG+ + E+ +P G EA A EA A
Sbjct: 217 GDSVDAEGRVGDSVDAEGPAGDSVDAEGRVGDSVEAGDPAGDGVEAGVPAGDSVEAEGPA 276
Query: 174 TEPSTPSGPESGPTPASAEQNE 195
+ GP S E +
Sbjct: 277 GDSMDAEGPAGRARRVSGEPQQ 298
Score = 35.4 bits (80), Expect = 0.031
Identities = 36/165 (21%), Positives = 57/165 (34%), Gaps = 1/165 (0%)
Query: 18 AAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGATGDAIEPAPPSQGAEAK 77
AAG G E G + K G P G + A T A +GA
Sbjct: 33 AAGGEAEGPEGSEGAEEAPRGAAAVKEAGGGGPDRGPEAEARGTRGAHGETEAEEGAPEG 92
Query: 78 GEVPP-KETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASSPTEEEQEQGEIGACSD 136
EVP E ++ P + + + + DS+A EE +++ E+ S
Sbjct: 93 AEVPQGGEETSGAQQVEGASPGRGAQGEPRGEAQREPEDSAAPERQEEAEQRPEVPEGSA 152
Query: 137 EGTAQEGKAAATPESQEPQAKGAEASAASEEEAGPQATEPSTPSG 181
G A + A P +A+G + E + + P+G
Sbjct: 153 SGEAGDSVDAEGPLGDNIEAEGPAGDSVEAEGRVGDSVDAEGPAG 197
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 42.4 bits (98), Expect = 3e-04
Identities = 49/198 (24%), Positives = 64/198 (32%), Gaps = 13/198 (6%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESP---PVNGTDEAA 58
G + K G AAG + E G + S G KGE P V G D
Sbjct: 702 GPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPR 761
Query: 59 GATGDAIEPAPPSQ-GAEAKGEVP-------PKETPKKKKKFSFKKPFKLSGLSFKRNRK 110
G TG P P Q G + +G P P+ +P ++ + P G +
Sbjct: 762 GPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEP 821
Query: 111 EGGGDSSASSPTEEEQEQGEIGACSDEGTA-QEGKAAATPESQEPQAKGAEASAASEEEA 169
G G+ A E G G G A G E P GA +
Sbjct: 822 GGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLP 881
Query: 170 GPQATEPST-PSGPESGP 186
GP + + P GP P
Sbjct: 882 GPPGSNGNPGPPGPSGSP 899
Score = 36.2 bits (82), Expect = 0.018
Identities = 53/213 (24%), Positives = 73/213 (34%), Gaps = 33/213 (15%)
Query: 1 MGSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKG----------EGESPP 50
MG + + RG AAGA + N G G P G +GE P
Sbjct: 299 MGPRGAPGERGRPGLPGAAGA---RGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGP 355
Query: 51 VNGTDEAAGATGDAIEPAPPSQ-GAE-------------AKGEVPPKETPKKKKKFSFKK 96
G+ + GA G EP P GA+ KGE+ P P +
Sbjct: 356 A-GSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARG 414
Query: 97 PFKLSGLSFKRNRKEGGGDSSASSPTEEEQEQGEIGACSDEGT-AQEGKAAATPESQEPQ 155
P +G + + G G+ + E +GE G G +G+ EP
Sbjct: 415 PPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPG 474
Query: 156 AKGAEASAASEEEAGPQATEPSTPSG--PESGP 186
A G +A E P P+ P+G E GP
Sbjct: 475 ANGLPGAAG--ERGAPGFRGPAGPNGIPGEKGP 505
Score = 34.3 bits (77), Expect = 0.069
Identities = 50/193 (25%), Positives = 60/193 (31%), Gaps = 17/193 (8%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGAT 61
G + S RG+ AG A E G G KGEG P V G G +
Sbjct: 792 GPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAG---PPGGS 848
Query: 62 GDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSA--- 118
G A P P QG KGE + +P F L G G S +
Sbjct: 849 GPAGPPGP--QG--VKGE---RGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGK 901
Query: 119 ---SSPTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEEAGPQATE 175
P G G +G A + +P +Q P A A A
Sbjct: 902 DGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGP 961
Query: 176 PSTPSGPESGPTP 188
P P GP P P
Sbjct: 962 PGMP-GPRGSPGP 973
Score = 33.9 bits (76), Expect = 0.090
Identities = 45/186 (24%), Positives = 57/186 (30%), Gaps = 19/186 (10%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGAT 61
G ++ P G A A G +NG G +GE P V G G
Sbjct: 408 GLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKD 467
Query: 62 GDAIEP-APPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASS 120
G EP A GA + P F+ P +G+ K G+ A
Sbjct: 468 GSPGEPGANGLPGAAGERGAP-----------GFRGPAGPNGIP---GEKGPAGERGAPG 513
Query: 121 PTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEEAGPQATEPSTPS 180
P GE G D G P + G S+ E+G P PS
Sbjct: 514 PAGPRGAAGEPG--RDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPG--PPGPS 569
Query: 181 GPESGP 186
GP P
Sbjct: 570 GPRGQP 575
Score = 30.8 bits (68), Expect = 0.76
Identities = 45/191 (23%), Positives = 58/191 (30%), Gaps = 23/191 (12%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGAT 61
G Q G+ + G + + + G G G G P NG G
Sbjct: 603 GPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPK 662
Query: 62 GDAIEP-APPSQG-AEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSAS 119
GDA P AP +G A A GE + P L+G R G
Sbjct: 663 GDAGAPGAPGGKGDAGAPGE---------------RGPPGLAGAPGLRGGAGPPGPEGGK 707
Query: 120 SPTEEEQEQGEIGACSDEGTAQEGKAAATP----ESQEPQAKGAEASAASEEEAGPQATE 175
G G +G E +P + EP GA+ + GP T
Sbjct: 708 GAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGP--TG 765
Query: 176 PSTPSGPESGP 186
P P GP P
Sbjct: 766 PIGPPGPAGQP 776
Score = 30.8 bits (68), Expect = 0.76
Identities = 51/228 (22%), Positives = 68/228 (29%), Gaps = 49/228 (21%)
Query: 10 RGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGATGDAIEP-- 67
+GD G G G G+ PKG+ +P G AGA G+ P
Sbjct: 629 KGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGL 688
Query: 68 --APPSQGAE-------AKGEVPPKETPKKKKKFSFK-KPFKLSGLSF---KRNRKEGGG 114
AP +G KG P P + P + GL K ++ E GG
Sbjct: 689 AGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGG 748
Query: 115 DSSASSPTEEEQEQ-----GEIGACSDEGTAQEGKAAATP-------------------- 149
+ P ++ G G G EG A P
Sbjct: 749 PGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGP 808
Query: 150 --------ESQEPQAKGAEASAASEEEAGPQATE-PSTPSGPESGPTP 188
++ EP KG + + E GP P SGP P P
Sbjct: 809 AGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGP 856
Score = 29.6 bits (65), Expect = 1.7
Identities = 29/102 (28%), Positives = 33/102 (32%), Gaps = 17/102 (16%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESP------------ 49
G K RG G + A ENG NG P G +P
Sbjct: 258 GFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAA 317
Query: 50 PVNGTDEAAGATGDAIEPAPPSQGA-----EAKGEVPPKETP 86
G D A G+ G P PP AKGEV P +P
Sbjct: 318 GARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSP 359
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 42.0 bits (97), Expect = 3e-04
Identities = 52/197 (26%), Positives = 68/197 (34%), Gaps = 21/197 (10%)
Query: 11 GDVTAEEAAGA-------SPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGATGD 63
GD A + GA SPA + + GH S + EG + P GT G+ +
Sbjct: 466 GDSAAVASGGAQTLALAGSPAPSGHPKAGH--SENGVEEDTEGRTGPKEGTP---GSPSE 520
Query: 64 AIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEG-GGDSSASSPT 122
P+P + E P ETP + S R G GD A SP+
Sbjct: 521 TPGPSPAGPAGDEPAE-SPSETPGPRPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPS 579
Query: 123 EEEQEQGEIGACSDEGTAQE----GKAAATPESQEPQAKGAEASAASEEEAGPQATEPST 178
E G DE G A P EP +E AGP EP+
Sbjct: 580 ETPGPS-PAGPTRDEPAESPSETPGPRPAGPAGDEPAESPSETPGP--RPAGPAGDEPAE 636
Query: 179 PSGPESGPTPASAEQNE 195
GP+PA ++E
Sbjct: 637 SPSETPGPSPAGPTRDE 653
Score = 32.7 bits (73), Expect = 0.20
Identities = 51/217 (23%), Positives = 71/217 (32%), Gaps = 42/217 (19%)
Query: 16 EEAAGASP---AKANGQENG--HVKSNG--DLSPKGEGESPPVNGT------DEAAGATG 62
EE + P A G+ G H K G D P+ P G DEA G
Sbjct: 312 EEGSPGDPDHEASTQGRTCGPEHSKGGGRVDEGPQPRSVEPQDAGPLERSQGDEAGGHGE 371
Query: 63 DAIEPAPPSQGAEAKGEV-----PPKETPKKKKKFSFKKPFKLSGL-----SFKRNRKEG 112
D EP P + + K E+ PP E + K L G S + +E
Sbjct: 372 DRPEPLSPKESKKRKLELSRREQPPTEPGPQSASEVEKIALNLEGCALSQGSLRTGTQEV 431
Query: 113 GGDS--SASSPTEE----------------EQEQGEIGACSDEGTAQEGKAAATPESQEP 154
GG A P + ++ G+ A + G A + S P
Sbjct: 432 GGQDPGEAVQPCRQPLGARVADKVRKRRKVDEGAGDSAAVASGGAQTLALAGSPAPSGHP 491
Query: 155 QAKGAEASAASEEEAGPQATEPSTPSGPESGPTPASA 191
+A G + E+ G + TP P P P+ A
Sbjct: 492 KA-GHSENGVEEDTEGRTGPKEGTPGSPSETPGPSPA 527
Score = 30.0 bits (66), Expect = 1.3
Identities = 36/154 (23%), Positives = 49/154 (31%), Gaps = 24/154 (15%)
Query: 43 KGEGESPPV-NGTDEAAGATGDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLS 101
+G G+S V +G + G P G G E K+ + P +
Sbjct: 463 EGAGDSAAVASGGAQTLALAGSPAPSGHPKAGHSENGVEEDTEGRTGPKEGTPGSPSETP 522
Query: 102 GLSFKRNRKEGGGDSSASSPTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEA 161
G S GD A SP+E G A P EP +E
Sbjct: 523 GPS----PAGPAGDEPAESPSETP-----------------GPRPAGPAGDEPAESPSET 561
Query: 162 SAASEEEAGPQATEPSTPSGPESGPTPASAEQNE 195
AGP EP+ GP+PA ++E
Sbjct: 562 PGP--RPAGPAGDEPAESPSETPGPSPAGPTRDE 593
Score = 29.6 bits (65), Expect = 1.7
Identities = 47/215 (21%), Positives = 74/215 (34%), Gaps = 58/215 (26%)
Query: 1 MGSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGA 60
+ + SK + +++ E P + E + N + +G GT E G
Sbjct: 377 LSPKESKKRKLELSRREQPPTEPGPQSASEVEKIALNLEGCALSQGSLR--TGTQEVGGQ 434
Query: 61 T-GDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSA- 118
G+A++P GA +V +K++K EG GDS+A
Sbjct: 435 DPGEAVQPCRQPLGARVADKV------RKRRKVD-----------------EGAGDSAAV 471
Query: 119 -----------SSPTE-------------EEQEQGEIGACSDEGTAQEGKAAATPESQEP 154
SP EE +G G EGT G + TP
Sbjct: 472 ASGGAQTLALAGSPAPSGHPKAGHSENGVEEDTEGRTGP--KEGTP--GSPSETPGPSPA 527
Query: 155 QAKGAEASAASEEEAGPQATEPSTPSGPESGPTPA 189
G E + + E GP+ P+ P+G E +P+
Sbjct: 528 GPAGDEPAESPSETPGPR---PAGPAGDEPAESPS 559
>gi|56676397 ankyrin repeat domain 11 [Homo sapiens]
Length = 2663
Score = 42.0 bits (97), Expect = 3e-04
Identities = 38/162 (23%), Positives = 65/162 (40%), Gaps = 15/162 (9%)
Query: 36 SNGDLSPKGEGESPP----------VNGTDEAAGATGDAIEPAPPSQGAEAKGEVPPKET 85
++G+ P E +PP +NG D + + P E+ P+ +
Sbjct: 2149 ADGEAEPVEESLAPPEEMPPGAPGVINGGDVSTVVAEEPPALPPDQASTRLPAELEPEPS 2208
Query: 86 PKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASSPTEEEQEQGEIGACSDEGTAQEGKA 145
+ K + + + + +R R G S+ P EQ +G+ D+G EG
Sbjct: 2209 GEPKLDVALEAAVEAETVPEERAR---GDPDSSVEPAPVPPEQRPLGS-GDQGAEAEGPP 2264
Query: 146 AATPESQEPQAKGAEASAASEEEAGPQ-ATEPSTPSGPESGP 186
AA+ + + A A A + + AGP+ TE S + P GP
Sbjct: 2265 AASLCAPDGPAPNTVAQAQAADGAGPEDDTEASRAAAPAEGP 2306
Score = 35.8 bits (81), Expect = 0.024
Identities = 45/187 (24%), Positives = 73/187 (39%), Gaps = 28/187 (14%)
Query: 16 EEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGATGDAIEPAPP----- 70
++A+ PA+ + +G K + L E E+ P + A G ++EPAP
Sbjct: 2193 DQASTRLPAELEPEPSGEPKLDVALEAAVEAETVP---EERARGDPDSSVEPAPVPPEQR 2249
Query: 71 -----SQGAEAKGEVPPKET---PKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASSPT 122
QGAEA+G PP + P + + G + + + S A++P
Sbjct: 2250 PLGSGDQGAEAEG--PPAASLCAPDGPAPNTVAQAQAADGAGPEDDTEA----SRAAAPA 2303
Query: 123 EEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEEAGPQATEPSTPSGP 182
E + A + TA+ KA E + + A++ + GP PS
Sbjct: 2304 EGPPGGIQPEAAEPKPTAEAPKAPRVEEIPQRMTRNRAQMLANQSKQGP------PPSEK 2357
Query: 183 ESGPTPA 189
E PTPA
Sbjct: 2358 ECAPTPA 2364
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 42.0 bits (97), Expect = 3e-04
Identities = 46/197 (23%), Positives = 71/197 (36%), Gaps = 11/197 (5%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQE-NGHVKSNGDLSPKGEGESPPVNGTDEAAGA 60
G + P+G + P K G G +S G P G+ E P G +++ G
Sbjct: 34 GKPEGRRPQGG-NQPQRPPPPPGKPQGPPPQGGNQSQGPPPPPGKPEGRPPQGGNQSQGP 92
Query: 61 TGDAIEPA--PPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNR-KEGGGDSS 117
+P PP G +++G PP P++ + + K R GG+ S
Sbjct: 93 PPHPGKPERPPPQGGNQSQGTPPPPGKPERPPPQGGNQSHRPPPPPGKPERPPPQGGNQS 152
Query: 118 ASSPTEEEQEQG---EIGACSDEGTAQEGKAAATP--ESQEPQAKGAEASAASEEEAGPQ 172
P + +G + G S + GK P E +PQ AG
Sbjct: 153 QGPPPHPGKPEGPPPQEGNKSRSARSPPGKPQGPPQQEGNKPQGPPPPGKPQGPPPAGGN 212
Query: 173 ATEP-STPSGPESGPTP 188
+P + P+G GP P
Sbjct: 213 PQQPQAPPAGKPQGPPP 229
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 41.6 bits (96), Expect = 4e-04
Identities = 47/184 (25%), Positives = 67/184 (36%), Gaps = 13/184 (7%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGAT 61
G + PRG V + G ++ ENG + G P+G P V G G
Sbjct: 813 GEKGEPGPRGLVGPPGSRGNPGSRG---ENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQK 869
Query: 62 GDAIEPAPPSQG-AEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSA-- 118
GDA P P QG A + G P P K + P +G R G + A
Sbjct: 870 GDAGSPGP--QGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPG 927
Query: 119 -SSPTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEEAGPQATEPS 177
+ P E ++G G D G+ G+ + P G + + + GP P
Sbjct: 928 PAGPLGEPGKEGPPGLRGDPGS--HGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDG--PP 983
Query: 178 TPSG 181
P+G
Sbjct: 984 GPAG 987
Score = 36.2 bits (82), Expect = 0.018
Identities = 42/183 (22%), Positives = 54/183 (29%), Gaps = 20/183 (10%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGAT 61
G + P G V + GA G S G P G P G + G
Sbjct: 402 GQRGETGPPGPVGSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQ 461
Query: 62 GDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASSP 121
G +P P KGE PK P + P G KR + G P
Sbjct: 462 GIRGQPGDPGVPG-FKGEAGPKGEP---GPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGP 517
Query: 122 TEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEEAGPQAT--EPSTP 179
E G G +G P KGA+ +GP+ + +P P
Sbjct: 518 VGERGAPGNRGFPGSDGL--------------PGPKGAQGERGPVGSSGPKGSQGDPGRP 563
Query: 180 SGP 182
P
Sbjct: 564 GEP 566
Score = 35.4 bits (80), Expect = 0.031
Identities = 45/203 (22%), Positives = 68/203 (33%), Gaps = 18/203 (8%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGAT 61
G + S G AG + ++G V +G + P G G G
Sbjct: 618 GPKGSSGDPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGPPGPTGFQ 677
Query: 62 GDAIEPAPPSQGAEA--------KGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGG 113
G P PP +G + G V P ++ + ++GL ++ G
Sbjct: 678 GLPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGERGEPGITGLPGEKGMAGGH 737
Query: 114 GDSSASSPTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQA----KGAEASAASEEEA 169
G G+ G +G E A TP + + KGAE +A ++
Sbjct: 738 GPDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGNDGAR 797
Query: 170 G-PQATEPSTPSGP-----ESGP 186
G P P P+GP E GP
Sbjct: 798 GLPGPLGPPGPAGPTGEKGEPGP 820
Score = 34.7 bits (78), Expect = 0.053
Identities = 43/175 (24%), Positives = 55/175 (31%), Gaps = 12/175 (6%)
Query: 21 ASPAKANGQEN--GHVKSNGDLSPKGEGESPPVNGTDEAAGATGDAIEP---APPSQGAE 75
A P A G E G G P G P GTD GA G P PP
Sbjct: 389 AGPTGARGPEGPQGQRGETGPPGPVGSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGSAGP 448
Query: 76 AKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASSPTEEEQEQGEIGACS 135
P T + + P + G + K G P E+G+ G
Sbjct: 449 PGSPGPQGSTGPQGIRGQPGDP-GVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRG 507
Query: 136 DEGT----AQEGKAAATPESQEPQAKGAEASAASEEEAGPQATEPSTPSGPESGP 186
D GT G+ A P + G ++ E GP + S P G + P
Sbjct: 508 DPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPVGS--SGPKGSQGDP 560
Score = 33.9 bits (76), Expect = 0.090
Identities = 43/189 (22%), Positives = 57/189 (30%), Gaps = 31/189 (16%)
Query: 1 MGSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGA 60
+G S P G+ E AG G GD P G S GT GA
Sbjct: 1034 VGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGA 1093
Query: 61 TGDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASS 120
GDA + P ++G + P K+ G
Sbjct: 1094 PGDAGQRGDPG----SRGPIGPPGRAGKR------------------------GLPGPQG 1125
Query: 121 PTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEEAGPQATE-PSTP 179
P ++ + G+ G +G G P G + SA GP+ P P
Sbjct: 1126 PRGDKGDHGDRGDRGQKG--HRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPGPVGP 1183
Query: 180 SGPESGPTP 188
SG E P P
Sbjct: 1184 SGKEGNPGP 1192
Score = 32.0 bits (71), Expect = 0.34
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 2 GSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKG-EGESPPVNGTDEAAGA 60
G + + PRGD G + G S+G PKG +GE PV G+ G+
Sbjct: 498 GEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPV-GSSGPKGS 556
Query: 61 TGDAIEPAPPS-QGAEAKGEVPPKETPKKK 89
GD P P GA P + P+ K
Sbjct: 557 QGDPGRPGEPGLPGARGLTGNPGVQGPEGK 586
Score = 28.1 bits (61), Expect = 4.9
Identities = 38/149 (25%), Positives = 49/149 (32%), Gaps = 7/149 (4%)
Query: 38 GDLSPKGEGESPPVNGTDEAAGATGD-AIEPAPPSQGAEAKGEVP-PKETPKKKKKFSFK 95
GD GE P +G AG TG I P +G +P P TP K
Sbjct: 966 GDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGPTGAT 1025
Query: 96 KPFKLSGLSFKRNRKEGGGDSSASSPTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQ 155
G G+ P + G GA + G + A P SQ
Sbjct: 1026 GDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGPAGLPGSQ--G 1083
Query: 156 AKGAEASAASEEEAGPQATEPST--PSGP 182
A G + +AG Q +P + P GP
Sbjct: 1084 APGTPGPVGAPGDAG-QRGDPGSRGPIGP 1111
Score = 27.3 bits (59), Expect = 8.4
Identities = 37/160 (23%), Positives = 47/160 (29%), Gaps = 37/160 (23%)
Query: 38 GDLSPKGEGESPPVNGTDEAAGATGDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKP 97
G+ PKG G D G G P PP P +P
Sbjct: 144 GERGPKGRPGPRGPQGIDGEPGVPGQPGAPGPPGH-------------PSHPGPDGLSRP 190
Query: 98 F--KLSGLSFKRNRKEGGGDSSASSPTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQ 155
F +++GL + K G G P G +G G P+ + Q
Sbjct: 191 FSAQMAGL----DEKSGLGSQVGLMP-------GSVGPVGPRG----------PQGLQGQ 229
Query: 156 AKGAEASAASEEEAGPQATEPSTPSGPESGPTPASAEQNE 195
GA + E P P GPE GP E E
Sbjct: 230 QGGAGPTGPPGEPGDPGPMGPIGSRGPE-GPPGKPGEDGE 268
>gi|156104891 general transcription factor IIF, polypeptide 1, 74kDa
[Homo sapiens]
Length = 517
Score = 41.6 bits (96), Expect = 4e-04
Identities = 48/201 (23%), Positives = 76/201 (37%), Gaps = 32/201 (15%)
Query: 11 GDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGATGDAIEPAPP 70
GD +E S ++ QE K+ +G G DE + ++ ++ E PP
Sbjct: 264 GDFEGQEVDYMSDGSSSSQEEPESKAKAPQQEEGP------KGVDEQSDSSEESEEEKPP 317
Query: 71 SQGAEAKGEVP-PKETPKKKKKFSFKKP---------FKLSGLSF--------KRNRKEG 112
+ E + E P KK++K S ++ + S F KR RK
Sbjct: 318 EEDKEEEEEKKAPTPQEKKRRKDSSEESDSSEESDIDSEASSALFMAKKKTPPKRERKPS 377
Query: 113 GGDSSASSPTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEEEAGPQ 172
GG S +S +G T+ +AAA+ Q + A+ + GPQ
Sbjct: 378 GGSSRGNSRPGTPSAEGG-------STSSTLRAAASKLEQGKRVSEMPAAKRLRLDTGPQ 430
Query: 173 A-TEPSTPSGPESGPTPASAE 192
+ + STP P TP S +
Sbjct: 431 SLSGKSTPQPPSGKTTPNSGD 451
Score = 36.6 bits (83), Expect = 0.014
Identities = 43/192 (22%), Positives = 74/192 (38%), Gaps = 25/192 (13%)
Query: 12 DVTAEEAAGASPAKANGQENGHVKSNGDLSP--KGEGESPPVNGTDEAAGATGDAIEPAP 69
D+ + + + A+G+E G V +P KG + G+D+ A D +
Sbjct: 209 DLEDDLEMSSDASDASGEEGGRVPKAKKKAPLAKGGRKKKKKKGSDDEAFEDSDDGDFEG 268
Query: 70 PSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASSPTEEEQEQG 129
+ G +E P+ K K P + G + + +S P EE++E+
Sbjct: 269 QEVDYMSDGSSSSQEEPESKAK----APQQEEGPKGVDEQSDSSEESEEEKPPEEDKEE- 323
Query: 130 EIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASEE-----EAGPQ--ATEPSTPSGP 182
+E K A TP+ ++ + +E S +SEE EA + TP
Sbjct: 324 -----------EEEKKAPTPQEKKRRKDSSEESDSSEESDIDSEASSALFMAKKKTPPKR 372
Query: 183 ESGPTPASAEQN 194
E P+ S+ N
Sbjct: 373 ERKPSGGSSRGN 384
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 41.6 bits (96), Expect = 4e-04
Identities = 39/184 (21%), Positives = 74/184 (40%), Gaps = 47/184 (25%)
Query: 45 EGESPPVNGTDEAAGATGDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLS 104
+G + P+N ++G + A + ++K E K K K++ S P K S
Sbjct: 42 DGRTSPINEDIRSSGRNSPS---AASTSSNDSKAETVKKSAKKVKEEAS--SPLK----S 92
Query: 105 FKRNRKEGGGD-----------------SSASSPTEEEQEQGEIGACSDEGTAQ-----E 142
KR R++ D S +SP+E E E + + +DEG++ +
Sbjct: 93 NKRQREKVASDTEEADRTSSKKTKTQEISRPNSPSEGEGESSDSRSVNDEGSSDPKDIDQ 152
Query: 143 GKAAATPESQEPQAKGAEASAASEEEA----------------GPQATEPSTPSGPESGP 186
+ +P PQ +++ ++++++ P + P TP P GP
Sbjct: 153 DNRSTSPSIPSPQDNESDSDSSAQQQMLQAQPPALQAPTGVTPAPSSAPPGTPQLPTPGP 212
Query: 187 TPAS 190
TP++
Sbjct: 213 TPSA 216
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 41.6 bits (96), Expect = 4e-04
Identities = 39/184 (21%), Positives = 74/184 (40%), Gaps = 47/184 (25%)
Query: 45 EGESPPVNGTDEAAGATGDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLS 104
+G + P+N ++G + A + ++K E K K K++ S P K S
Sbjct: 596 DGRTSPINEDIRSSGRNSPS---AASTSSNDSKAETVKKSAKKVKEEAS--SPLK----S 646
Query: 105 FKRNRKEGGGD-----------------SSASSPTEEEQEQGEIGACSDEGTAQ-----E 142
KR R++ D S +SP+E E E + + +DEG++ +
Sbjct: 647 NKRQREKVASDTEEADRTSSKKTKTQEISRPNSPSEGEGESSDSRSVNDEGSSDPKDIDQ 706
Query: 143 GKAAATPESQEPQAKGAEASAASEEEA----------------GPQATEPSTPSGPESGP 186
+ +P PQ +++ ++++++ P + P TP P GP
Sbjct: 707 DNRSTSPSIPSPQDNESDSDSSAQQQMLQAQPPALQAPTGVTPAPSSAPPGTPQLPTPGP 766
Query: 187 TPAS 190
TP++
Sbjct: 767 TPSA 770
Score = 30.8 bits (68), Expect = 0.76
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 12/105 (11%)
Query: 78 GEVPPKETPKKKKKFSFKKPFK-----LSGLSFKRNRKEGGGDSSASSPTEEE--QEQGE 130
GE+PP E P F F KP K LSG R R+ G S+ S +++ G
Sbjct: 540 GELPPIEKPVDPPPFMF-KPVKEEDDGLSGKHSMRTRRSRGSMSTLRSGRKKQPASPDGR 598
Query: 131 IGACSDE--GTAQEGKAAATPESQEPQAKGAEASA--ASEEEAGP 171
+++ + + +AA+ S + +A+ + SA EE + P
Sbjct: 599 TSPINEDIRSSGRNSPSAASTSSNDSKAETVKKSAKKVKEEASSP 643
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.293 0.117 0.317
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,119,956
Number of Sequences: 37866
Number of extensions: 590708
Number of successful extensions: 6294
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 806
Number of HSP's that attempted gapping in prelim test: 3827
Number of HSP's gapped (non-prelim): 2627
length of query: 195
length of database: 18,247,518
effective HSP length: 97
effective length of query: 98
effective length of database: 14,574,516
effective search space: 1428302568
effective search space used: 1428302568
T: 11
A: 40
X1: 17 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.