Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ZNF789 Sequence: fasta or formatted (62aa) NCBI GI: 61676104
Description:

zinc finger protein 789 isoform 2

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt prot [425aa] zinc finger protein 789 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5          4           2
 C cysteine            1.6          1           1
 D aspartate           6.5          4           1
 E glutamate           8.1          5           2
 F phenylalanine       8.1          5           1
 G glycine             4.8          3           1
 H histidine           1.6          1           1
 I isoleucine          1.6          1           1
 K lysine              3.2          2           1
 L leucine            12.9          8           2
 M methionine          6.5          4           1
 N asparagine          4.8          3           1
 P proline             4.8          3           2
 Q glutamine           3.2          2           1
 R arginine            6.5          4           1
 S serine              1.6          1           1
 T threonine           1.6          1           1
 V valine              6.5          4           1
 W tryptophan          3.2          2           1
 Y tyrosine            6.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 789 isoform 2 
ZNF789                0.791   zinc finger protein 789 isoform 1 
ZNF74                 0.364   zinc finger protein 74 
ZNF713                0.364   zinc finger protein 713 
ZNF189                0.364   zinc finger protein 189 isoform 1 
ZNF655                0.345   zinc finger protein 655 isoform b 
ZNF655                0.345   zinc finger protein 655 isoform b 
ZNF3                  0.336   zinc finger protein 3 isoform 1 
ZNF3                  0.336   zinc finger protein 3 isoform 2 
ZNF846                0.327   zinc finger protein 846 
ZNF354A               0.318   zinc finger protein 354A 
ZNF274                0.309   zinc finger protein 274 isoform a 
ZNF642                0.309   zinc finger protein 642 
ZNF554                0.309   zinc finger protein 554 
ZNF454                0.309   zinc finger protein 454 
ZNF527                0.309   zinc finger protein 527 
ZNF514                0.309   zinc finger protein 514 
ZNF667                0.309   zinc finger protein 667 
LOC100291520          0.300   PREDICTED: hypothetical protein XP_002347975 isofor...
ZNF519                0.300   zinc finger protein 519 
ZNF267                0.300   zinc finger protein 267 
ZNF445                0.300   zinc finger protein 445 
ZNF534                0.300   zinc finger protein 534 isoform 2 
ZNF534                0.300   zinc finger protein 534 isoform 1 
LOC100294071          0.300   PREDICTED: similar to zinc finger protein 208 [Homo...
ZNF274                0.300   zinc finger protein 274 isoform c 
ZNF649                0.300   zinc finger protein 649 
ZNF33A                0.300   zinc finger protein 33A isoform b 
ZNF33A                0.300   zinc finger protein 33A isoform a 
ZNF615                0.300   zinc finger protein 615 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press