Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ZNF354A Sequence: fasta or formatted (605aa) NCBI GI: 37537689
Description:

zinc finger protein 354A

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.1         19           2
 C cysteine            5.3         32           1
 D aspartate           1.7         10           1
 E glutamate           7.3         44           2
 F phenylalanine       3.8         23           1
 G glycine             6.0         36           1
 H histidine           5.3         32           1
 I isoleucine          5.8         35           2
 K lysine             10.4         63           2
 L leucine             6.9         42           2
 M methionine          0.5          3           1
 N asparagine          4.5         27           1
 P proline             4.0         24           2
 Q glutamine           5.5         33           2
 R arginine            7.1         43           2
 S serine             11.4         69           4
 T threonine           6.1         37           2
 V valine              2.1         13           1
 W tryptophan          0.5          3           1
 Y tyrosine            2.8         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 354A 
ZNF354B               0.843   zinc finger protein 354B 
ZNF184                0.446   zinc finger protein 184 
DKFZp686E2433         0.440   hypothetical protein LOC345462 
ZNF135                0.440   zinc finger protein 135 
ZNF624                0.430   zinc finger protein 624 
ZNF429                0.424   zinc finger protein 429 
ZNF93                 0.423   zinc finger protein 93 
ZNF85                 0.421   zinc finger protein 85 
ZNF470                0.421   zinc finger protein 470 
ZNF99                 0.420   zinc finger protein 99 
ZNF420                0.419   zinc finger protein 420 
ZNF595                0.418   zinc finger protein 595 
ZNF726                0.417   PREDICTED: zinc finger protein 726 
ZNF726                0.417   PREDICTED: zinc finger protein 726 
ZNF726                0.417   PREDICTED: zinc finger protein 726 
ZNF287                0.416   zinc finger protein 287 
ZNF665                0.414   zinc finger protein 665 
ZNF708                0.408   zinc finger protein 708 
ZNF66                 0.407   PREDICTED: zinc finger protein 66 
ZNF66                 0.407   PREDICTED: zinc finger protein 66 
ZNF66                 0.407   PREDICTED: zinc finger protein 66 
ZNF471                0.407   zinc finger protein 471 
ZNF585B               0.406   zinc finger protein 585B 
ZNF160                0.406   zinc finger protein 160 
ZNF208                0.406   zinc finger protein 208 
ZNF160                0.406   zinc finger protein 160 
ZNF160                0.406   zinc finger protein 160 
ZNF728                0.404   PREDICTED: zinc finger protein 728 
ZNF254                0.404   zinc finger protein 254 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press