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Search of human proteins with 6005768
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|6005768 GABA(A) receptor-associated protein-like 2 [Homo
sapiens]
(117 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|6005768 GABA(A) receptor-associated protein-like 2 [Homo sapi... 238 8e-64
gi|13899219 GABA(A) receptor-associated protein like 1 [Homo sap... 148 1e-36
gi|6005764 GABA(A) receptor-associated protein [Homo sapiens] 142 4e-35
gi|14210522 microtubule-associated protein 1 light chain 3 alpha... 99 7e-22
gi|51972260 microtubule-associated protein 1 light chain 3 gamma... 95 1e-20
gi|31563518 microtubule-associated protein 1 light chain 3 alpha... 94 2e-20
gi|12383056 microtubule-associated proteins 1A/1B light chain 3 ... 92 7e-20
gi|148277548 microtubule-associated protein 1 light chain 3 beta... 89 7e-19
gi|169183885 PREDICTED: similar to microtubule-associated protei... 78 1e-15
gi|169179756 PREDICTED: similar to microtubule-associated protei... 78 1e-15
gi|169180155 PREDICTED: similar to microtubule-associated protei... 78 1e-15
gi|239755918 PREDICTED: similar to microtubule-associated protei... 60 4e-10
gi|239750436 PREDICTED: similar to microtubule-associated protei... 60 4e-10
gi|239744738 PREDICTED: similar to microtubule-associated protei... 60 4e-10
gi|38261969 APG12 autophagy 12-like [Homo sapiens] 28 1.6
gi|30795117 F-box only protein, helicase, 18 isoform 1 [Homo sap... 28 1.6
gi|30795119 F-box only protein, helicase, 18 isoform 2 [Homo sap... 28 1.6
gi|169169865 PREDICTED: hypothetical protein LOC285754 [Homo sap... 27 3.5
gi|169168870 PREDICTED: hypothetical protein LOC285754 [Homo sap... 27 3.5
gi|169169319 PREDICTED: hypothetical protein LOC285754 [Homo sap... 27 3.5
gi|26080431 ATPase family, AAA domain containing 5 [Homo sapiens] 27 3.5
>gi|6005768 GABA(A) receptor-associated protein-like 2 [Homo
sapiens]
Length = 117
Score = 238 bits (607), Expect = 8e-64
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQF 60
MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQF
Sbjct: 1 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQF 60
Query: 61 MWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF 117
MWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF
Sbjct: 61 MWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF 117
>gi|13899219 GABA(A) receptor-associated protein like 1 [Homo
sapiens]
Length = 117
Score = 148 bits (373), Expect = 1e-36
Identities = 71/116 (61%), Positives = 88/116 (75%)
Query: 1 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQF 60
MK+ +KEDH E+R E KIR KYPDRVPVIVEK +++ D+DKRKYLVPSD+TV QF
Sbjct: 1 MKFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQF 60
Query: 61 MWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
++IRKRI L E A+F FV+ T+P +S TMGQLYE +ED FLYVAYS E+ +G
Sbjct: 61 YFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116
>gi|6005764 GABA(A) receptor-associated protein [Homo sapiens]
Length = 117
Score = 142 bits (359), Expect = 4e-35
Identities = 67/116 (57%), Positives = 89/116 (76%)
Query: 1 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQF 60
MK+++KE+H E R E KIR KYPDRVPVIVEK ++I D+DK+KYLVPSD+TV QF
Sbjct: 1 MKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60
Query: 61 MWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
++IRKRI L +E A+F FV+ +P +S TMGQLY++ +ED FLY+AYS E+ +G
Sbjct: 61 YFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116
>gi|14210522 microtubule-associated protein 1 light chain 3 alpha
isoform a [Homo sapiens]
Length = 121
Score = 99.0 bits (245), Expect = 7e-22
Identities = 48/115 (41%), Positives = 77/115 (66%), Gaps = 2/115 (1%)
Query: 5 FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGS-QIVDIDKRKYLVPSDITVAQFMWI 63
FK+ S RC E +IR ++P ++PVI+E+ G Q+ +DK K+LVP + +++ + I
Sbjct: 7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKI 66
Query: 64 IRKRIQLPSEKAIFLFVDK-TVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF 117
IR+R+QL +A FL V++ ++ S + +YE+EKDEDGFLY+ Y+ + TFGF
Sbjct: 67 IRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 121
>gi|51972260 microtubule-associated protein 1 light chain 3 gamma
[Homo sapiens]
Length = 147
Score = 95.1 bits (235), Expect = 1e-20
Identities = 49/114 (42%), Positives = 76/114 (66%), Gaps = 2/114 (1%)
Query: 5 FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVD-IDKRKYLVPSDITVAQFMWI 63
FK+ SL R E A IRAK+P+++PV+VE+ + +DK K+LVP ++T+ QF+ I
Sbjct: 13 FKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSI 72
Query: 64 IRKRIQLPSEKAIFLFVD-KTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
IR R+ L + +A +L V+ K++ S TM ++Y KDEDGF+Y+ Y+ + TFG
Sbjct: 73 IRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG 126
>gi|31563518 microtubule-associated protein 1 light chain 3 alpha
isoform b [Homo sapiens]
Length = 125
Score = 94.0 bits (232), Expect = 2e-20
Identities = 45/106 (42%), Positives = 73/106 (68%), Gaps = 2/106 (1%)
Query: 14 RCVESAKIRAKYPDRVPVIVEKVSGS-QIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPS 72
RC E +IR ++P ++PVI+E+ G Q+ +DK K+LVP + +++ + IIR+R+QL
Sbjct: 20 RCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNP 79
Query: 73 EKAIFLFVDK-TVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF 117
+A FL V++ ++ S + +YE+EKDEDGFLY+ Y+ + TFGF
Sbjct: 80 TQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 125
>gi|12383056 microtubule-associated proteins 1A/1B light chain 3
[Homo sapiens]
Length = 125
Score = 92.4 bits (228), Expect = 7e-20
Identities = 45/114 (39%), Positives = 75/114 (65%), Gaps = 2/114 (1%)
Query: 5 FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGS-QIVDIDKRKYLVPSDITVAQFMWI 63
FK+ + E R + IR ++P ++PVI+E+ G Q+ +DK K+LVP + +++ + I
Sbjct: 7 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 66
Query: 64 IRKRIQLPSEKAIFLFVD-KTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
IR+R+QL + +A FL V+ ++ S + ++YE EKDEDGFLY+ Y+ + TFG
Sbjct: 67 IRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120
>gi|148277548 microtubule-associated protein 1 light chain 3 beta 2
[Homo sapiens]
Length = 125
Score = 89.0 bits (219), Expect = 7e-19
Identities = 44/114 (38%), Positives = 74/114 (64%), Gaps = 2/114 (1%)
Query: 5 FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGS-QIVDIDKRKYLVPSDITVAQFMWI 63
FK+ + E R + IR ++P ++PVI+E+ G Q+ +DK K+LVP + +++ + I
Sbjct: 7 FKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKI 66
Query: 64 IRKRIQLPSEKAIFLFVD-KTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
IR+R+QL + +A FL V+ ++ S + ++YE EKDEDGFLY+ + + TFG
Sbjct: 67 IRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG 120
>gi|169183885 PREDICTED: similar to microtubule-associated proteins
1A/1B light chain 3 [Homo sapiens]
Length = 157
Score = 78.2 bits (191), Expect = 1e-15
Identities = 43/116 (37%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 5 FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGS-QIVDIDKRKYLVPS--DITVAQFM 61
FK+ + + R V+ I+ ++P + PVI E+ G Q+ +DK K+LVP D+ +++ +
Sbjct: 38 FKQRRTFQQR-VDVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVNMSELI 96
Query: 62 WIIRKRIQLPSEKAIFLFVD-KTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
IIR+R+QL + +A L V+ ++ S + ++YE EKDEDGFLY+ Y+ + T+G
Sbjct: 97 KIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETYG 152
>gi|169179756 PREDICTED: similar to microtubule-associated proteins
1A/1B light chain 3 [Homo sapiens]
Length = 377
Score = 78.2 bits (191), Expect = 1e-15
Identities = 43/116 (37%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 5 FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGS-QIVDIDKRKYLVPS--DITVAQFM 61
FK+ + + R V+ I+ ++P + PVI E+ G Q+ +DK K+LVP D+ +++ +
Sbjct: 258 FKQRRTFQQR-VDVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVNMSELI 316
Query: 62 WIIRKRIQLPSEKAIFLFVD-KTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
IIR+R+QL + +A L V+ ++ S + ++YE EKDEDGFLY+ Y+ + T+G
Sbjct: 317 KIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETYG 372
>gi|169180155 PREDICTED: similar to microtubule-associated proteins
1A/1B light chain 3 [Homo sapiens]
Length = 377
Score = 78.2 bits (191), Expect = 1e-15
Identities = 43/116 (37%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 5 FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGS-QIVDIDKRKYLVPS--DITVAQFM 61
FK+ + + R V+ I+ ++P + PVI E+ G Q+ +DK K+LVP D+ +++ +
Sbjct: 258 FKQRRTFQQR-VDVRLIQEQHPAKSPVITERYQGEKQLPVLDKTKFLVPDVRDVNMSELI 316
Query: 62 WIIRKRIQLPSEKAIFLFVD-KTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
IIR+R+QL + +A L V+ ++ S + ++YE EKDEDGFLY+ Y+ + T+G
Sbjct: 317 KIIRRRLQLNANQAFLLVVNGHSMVSVSTPVSEVYESEKDEDGFLYMVYASQETYG 372
>gi|239755918 PREDICTED: similar to microtubule-associated protein 1
light chain 3 beta [Homo sapiens]
Length = 105
Score = 60.1 bits (144), Expect = 4e-10
Identities = 31/75 (41%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Query: 44 IDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVD--KTVPQSSLTMGQLYEKEKDE 101
+DK K+LVP + +++ II++ ++L + +A FL V+ TV S+ T ++YE EKDE
Sbjct: 25 LDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPT-SEVYEGEKDE 83
Query: 102 DGFLYVAYSGENTFG 116
DGFLY Y+ + FG
Sbjct: 84 DGFLYTVYASQEMFG 98
>gi|239750436 PREDICTED: similar to microtubule-associated protein 1
light chain 3 beta [Homo sapiens]
Length = 105
Score = 60.1 bits (144), Expect = 4e-10
Identities = 31/75 (41%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Query: 44 IDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVD--KTVPQSSLTMGQLYEKEKDE 101
+DK K+LVP + +++ II++ ++L + +A FL V+ TV S+ T ++YE EKDE
Sbjct: 25 LDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPT-SEVYEGEKDE 83
Query: 102 DGFLYVAYSGENTFG 116
DGFLY Y+ + FG
Sbjct: 84 DGFLYTVYASQEMFG 98
>gi|239744738 PREDICTED: similar to microtubule-associated proteins
1A/1B light chain 3 [Homo sapiens]
Length = 105
Score = 60.1 bits (144), Expect = 4e-10
Identities = 31/75 (41%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Query: 44 IDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVD--KTVPQSSLTMGQLYEKEKDE 101
+DK K+LVP + +++ II++ ++L + +A FL V+ TV S+ T ++YE EKDE
Sbjct: 25 LDKTKFLVPDHVNMSELTKIIKRCLRLNANQAFFLLVNGPSTVSVSTPT-SEVYEGEKDE 83
Query: 102 DGFLYVAYSGENTFG 116
DGFLY Y+ + FG
Sbjct: 84 DGFLYTVYASQEMFG 98
>gi|38261969 APG12 autophagy 12-like [Homo sapiens]
Length = 187
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/90 (22%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 28 RVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKT-VPQ 86
++ ++++ V + I+ +K+ V T+ + I+K ++L + + +F++V+++ P
Sbjct: 101 KIDILLKAVGDTPIMKT--KKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPS 158
Query: 87 SSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
+G LYE DG L + Y +G
Sbjct: 159 PDQEVGTLYEC-FGSDGKLVLHYCKSQAWG 187
>gi|30795117 F-box only protein, helicase, 18 isoform 1 [Homo
sapiens]
Length = 1094
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 2 KWMFKEDHSLEHRCVESAK---------IRAKYPDRVPVIVEKVSGSQIVDIDKRKYLV 51
+W+ KE S R V +A+ + KY R+P +V+++ I D+D +Y++
Sbjct: 862 RWVHKEGFSGFKRYVTAAEDKELEAKIAVVEKYNIRIPELVQRIEKCHIEDLDFAEYIL 920
>gi|30795119 F-box only protein, helicase, 18 isoform 2 [Homo
sapiens]
Length = 1043
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 2 KWMFKEDHSLEHRCVESAK---------IRAKYPDRVPVIVEKVSGSQIVDIDKRKYLV 51
+W+ KE S R V +A+ + KY R+P +V+++ I D+D +Y++
Sbjct: 811 RWVHKEGFSGFKRYVTAAEDKELEAKIAVVEKYNIRIPELVQRIEKCHIEDLDFAEYIL 869
>gi|169169865 PREDICTED: hypothetical protein LOC285754 [Homo
sapiens]
Length = 1151
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/81 (20%), Positives = 36/81 (44%)
Query: 30 PVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSL 89
P++V+ + + ++ R+ P ++ + + + QL K + + K Q S
Sbjct: 125 PLVVQADAVQRELESCLRREYTPENLPLLLLQYYTERITQLAQSKYLHMLRWKRFCQHSK 184
Query: 90 TMGQLYEKEKDEDGFLYVAYS 110
M QLY K + G++ Y+
Sbjct: 185 IMEQLYPLYKKQVGYIMQEYN 205
>gi|169168870 PREDICTED: hypothetical protein LOC285754 [Homo
sapiens]
Length = 1151
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/81 (20%), Positives = 36/81 (44%)
Query: 30 PVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSL 89
P++V+ + + ++ R+ P ++ + + + QL K + + K Q S
Sbjct: 125 PLVVQADAVQRELESCLRREYTPENLPLLLLQYYTERIAQLAQSKYLHMLRWKRFCQHSK 184
Query: 90 TMGQLYEKEKDEDGFLYVAYS 110
M QLY K + G++ Y+
Sbjct: 185 IMEQLYPLYKKQVGYIMQEYN 205
>gi|169169319 PREDICTED: hypothetical protein LOC285754 [Homo
sapiens]
Length = 1151
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/81 (20%), Positives = 36/81 (44%)
Query: 30 PVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSL 89
P++V+ + + ++ R+ P ++ + + + QL K + + K Q S
Sbjct: 125 PLVVQADAVQRELESCLRREYTPENLPLLLLQYYTERIAQLAQSKYLHMLRWKRFCQHSK 184
Query: 90 TMGQLYEKEKDEDGFLYVAYS 110
M QLY K + G++ Y+
Sbjct: 185 IMEQLYPLYKKQVGYIMQEYN 205
>gi|26080431 ATPase family, AAA domain containing 5 [Homo sapiens]
Length = 1844
Score = 26.9 bits (58), Expect = 3.5
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 6 KEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQ-----IVDIDKRKYLVPSDITVAQF 60
KED+SL + VES+ +Y +V V+ E + ++ + + K + P T
Sbjct: 142 KEDYSLNNDFVESSTSVLRYKKQVEVLAENIQDTKSQPNTMTSLQNSKKVNPKQGTTKND 201
Query: 61 MWIIRKR 67
+RKR
Sbjct: 202 FKKLRKR 208
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,293,056
Number of Sequences: 37866
Number of extensions: 158204
Number of successful extensions: 340
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 306
Number of HSP's gapped (non-prelim): 21
length of query: 117
length of database: 18,247,518
effective HSP length: 87
effective length of query: 30
effective length of database: 14,953,176
effective search space: 448595280
effective search space used: 448595280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.