Search of human proteins with 5902024

Search of human proteins with 5902024

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo
sapiens]
         (217 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens]   437   e-123
gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo sapi...   397   e-111
gi|7706659 paired related homeobox 2 [Homo sapiens]                   215   3e-56
gi|126116581 retina and anterior neural fold homeobox [Homo sapi...   105   3e-23
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]                104   7e-23
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]                 104   7e-23
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]                 104   7e-23
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]                 104   7e-23
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]                 104   7e-23
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]                  104   7e-23
gi|189083681 paired box gene 6 isoform a [Homo sapiens]               104   7e-23
gi|4580424 paired box gene 6 isoform b [Homo sapiens]                 104   7e-23
gi|4505615 paired box gene 6 isoform a [Homo sapiens]                 104   7e-23
gi|46249382 paired-like homeobox 2a [Homo sapiens]                    104   7e-23
gi|4505619 paired box 7 isoform 1 [Homo sapiens]                      103   9e-23
gi|7524359 paired box 7 isoform 2 [Homo sapiens]                      103   9e-23
gi|207029223 paired box 7 isoform 3 [Homo sapiens]                    103   9e-23
gi|12707580 paired-like homeobox 2b [Homo sapiens]                    103   1e-22
gi|24497589 aristaless related homeobox [Homo sapiens]                103   1e-22
gi|122937484 dorsal root ganglia homeobox [Homo sapiens]              102   2e-22
gi|55743092 aristaless-like homeobox 4 [Homo sapiens]                 101   6e-22
gi|14249388 retina and anterior neural fold homeobox 2 [Homo sap...   101   6e-22
gi|113204604 aristaless-like homeobox 3 [Homo sapiens]                 99   2e-21
gi|89145413 short stature homeobox 2 isoform a [Homo sapiens]          96   2e-20
gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens]      96   2e-20
gi|6031203 short stature homeobox isoform SHOXb [Homo sapiens]         95   4e-20
gi|4506943 short stature homeobox isoform SHOXa [Homo sapiens]         95   4e-20
gi|24234708 paired-like homeodomain transcription factor 2 isofo...    94   9e-20
gi|87044888 short stature homeobox 2 isoform b [Homo sapiens]          94   1e-19
gi|21361183 paired-like homeodomain transcription factor 2 isofo...    92   3e-19

>gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens]
          Length = 217

 Score =  437 bits (1125), Expect = e-123
 Identities = 217/217 (100%), Positives = 217/217 (100%)

Query: 1   MTSSYGHVLERQPALGGRLDSPGNLDTLQAKKNFSVSHLLDLEEAGDMVAAQADENVGEA 60
           MTSSYGHVLERQPALGGRLDSPGNLDTLQAKKNFSVSHLLDLEEAGDMVAAQADENVGEA
Sbjct: 1   MTSSYGHVLERQPALGGRLDSPGNLDTLQAKKNFSVSHLLDLEEAGDMVAAQADENVGEA 60

Query: 61  GRSLLESPGLTSGSDTPQQDNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPD 120
           GRSLLESPGLTSGSDTPQQDNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPD
Sbjct: 61  GRSLLESPGLTSGSDTPQQDNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPD 120

Query: 121 AFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLANKNASLLKSYSGDVTAVEQPIV 180
           AFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLANKNASLLKSYSGDVTAVEQPIV
Sbjct: 121 AFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLANKNASLLKSYSGDVTAVEQPIV 180

Query: 181 PRPAPRPTDYLSWGTASPYRSSSLPRCCLHEGLHNGF 217
           PRPAPRPTDYLSWGTASPYRSSSLPRCCLHEGLHNGF
Sbjct: 181 PRPAPRPTDYLSWGTASPYRSSSLPRCCLHEGLHNGF 217


>gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo
           sapiens]
          Length = 245

 Score =  397 bits (1021), Expect = e-111
 Identities = 199/199 (100%), Positives = 199/199 (100%)

Query: 1   MTSSYGHVLERQPALGGRLDSPGNLDTLQAKKNFSVSHLLDLEEAGDMVAAQADENVGEA 60
           MTSSYGHVLERQPALGGRLDSPGNLDTLQAKKNFSVSHLLDLEEAGDMVAAQADENVGEA
Sbjct: 1   MTSSYGHVLERQPALGGRLDSPGNLDTLQAKKNFSVSHLLDLEEAGDMVAAQADENVGEA 60

Query: 61  GRSLLESPGLTSGSDTPQQDNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPD 120
           GRSLLESPGLTSGSDTPQQDNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPD
Sbjct: 61  GRSLLESPGLTSGSDTPQQDNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPD 120

Query: 121 AFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLANKNASLLKSYSGDVTAVEQPIV 180
           AFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLANKNASLLKSYSGDVTAVEQPIV
Sbjct: 121 AFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLANKNASLLKSYSGDVTAVEQPIV 180

Query: 181 PRPAPRPTDYLSWGTASPY 199
           PRPAPRPTDYLSWGTASPY
Sbjct: 181 PRPAPRPTDYLSWGTASPY 199


>gi|7706659 paired related homeobox 2 [Homo sapiens]
          Length = 253

 Score =  215 bits (547), Expect = 3e-56
 Identities = 126/197 (63%), Positives = 144/197 (73%), Gaps = 22/197 (11%)

Query: 13  PALGGRLDSPGNLDTLQAKKNFSVSHLLDLEE---AGDMVA---AQADENVGEAGRSLLE 66
           PALG     PG  D  QA+KNFSVSHLLDLEE   AG + A   A+A+   G A     E
Sbjct: 24  PALG-----PG--DCAQARKNFSVSHLLDLEEVAAAGRLAARPGARAEAREGAAR----E 72

Query: 67  SPGLTSGSDTPQQDND----QLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAF 122
             G +SGS+   QD +       S  K+K+KQRRNRTTFNSSQLQALERVFERTHYPDAF
Sbjct: 73  PSGGSSGSEAAPQDGECPSPGRGSAAKRKKKQRRNRTTFNSSQLQALERVFERTHYPDAF 132

Query: 123 VREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLANKNASLLKSYSGDVTAVEQPIVPR 182
           VRE+LARRVNL+EARVQVWFQNRRAKFRRNERAMLA+++ASLLKSYS +  A+EQP+ PR
Sbjct: 133 VREELARRVNLSEARVQVWFQNRRAKFRRNERAMLASRSASLLKSYSQE-AAIEQPVAPR 191

Query: 183 PAPRPTDYLSWGTASPY 199
           P     DYLSW  +SPY
Sbjct: 192 PTALSPDYLSWTASSPY 208


>gi|126116581 retina and anterior neural fold homeobox [Homo
           sapiens]
          Length = 346

 Score =  105 bits (262), Expect = 3e-23
 Identities = 52/88 (59%), Positives = 64/88 (72%), Gaps = 3/88 (3%)

Query: 67  SPGLTSGSDTPQQDNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVRED 126
           SPGL  G   P     +L+ EE+ K+K RRNRTTF + QL  LER FE++HYPD + RE+
Sbjct: 112 SPGLPVG---PATGEAKLSEEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREE 168

Query: 127 LARRVNLTEARVQVWFQNRRAKFRRNER 154
           LA +VNL E RVQVWFQNRRAK+RR E+
Sbjct: 169 LAGKVNLPEVRVQVWFQNRRAKWRRQEK 196


>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
          Length = 483

 Score =  104 bits (259), Expect = 7e-23
 Identities = 68/180 (37%), Positives = 97/180 (53%), Gaps = 16/180 (8%)

Query: 43  EEAGDMVAAQADENVGEAGRSLLESPGLTSGSDTPQQDN-DQLNSEEKK--KRKQRRNRT 99
           EE  D+   +A+E+  +A  S+     L+  +  PQ D    ++SE     KRKQRR+RT
Sbjct: 166 EEEADLERKEAEESEKKAKHSI--DGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRT 223

Query: 100 TFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLAN 159
           TF + QL+ LER FERTHYPD + RE+LA+R  LTEARVQVWF NRRA++R+      AN
Sbjct: 224 TFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAG---AN 280

Query: 160 KNASLLKSYSGDVTAVEQPIVPRPAPRPTDY--------LSWGTASPYRSSSLPRCCLHE 211
           +  +      G       P +P      T Y        +S  +++ +R   LP   +H+
Sbjct: 281 QLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQ 340


>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
          Length = 403

 Score =  104 bits (259), Expect = 7e-23
 Identities = 68/180 (37%), Positives = 97/180 (53%), Gaps = 16/180 (8%)

Query: 43  EEAGDMVAAQADENVGEAGRSLLESPGLTSGSDTPQQDN-DQLNSEEKK--KRKQRRNRT 99
           EE  D+   +A+E+  +A  S+     L+  +  PQ D    ++SE     KRKQRR+RT
Sbjct: 167 EEEADLERKEAEESEKKAKHSI--DGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRT 224

Query: 100 TFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLAN 159
           TF + QL+ LER FERTHYPD + RE+LA+R  LTEARVQVWF NRRA++R+      AN
Sbjct: 225 TFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAG---AN 281

Query: 160 KNASLLKSYSGDVTAVEQPIVPRPAPRPTDY--------LSWGTASPYRSSSLPRCCLHE 211
           +  +      G       P +P      T Y        +S  +++ +R   LP   +H+
Sbjct: 282 QLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQ 341


>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
          Length = 407

 Score =  104 bits (259), Expect = 7e-23
 Identities = 68/180 (37%), Positives = 97/180 (53%), Gaps = 16/180 (8%)

Query: 43  EEAGDMVAAQADENVGEAGRSLLESPGLTSGSDTPQQDN-DQLNSEEKK--KRKQRRNRT 99
           EE  D+   +A+E+  +A  S+     L+  +  PQ D    ++SE     KRKQRR+RT
Sbjct: 167 EEEADLERKEAEESEKKAKHSI--DGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRT 224

Query: 100 TFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLAN 159
           TF + QL+ LER FERTHYPD + RE+LA+R  LTEARVQVWF NRRA++R+      AN
Sbjct: 225 TFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAG---AN 281

Query: 160 KNASLLKSYSGDVTAVEQPIVPRPAPRPTDY--------LSWGTASPYRSSSLPRCCLHE 211
           +  +      G       P +P      T Y        +S  +++ +R   LP   +H+
Sbjct: 282 QLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQ 341


>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
          Length = 505

 Score =  104 bits (259), Expect = 7e-23
 Identities = 68/180 (37%), Positives = 97/180 (53%), Gaps = 16/180 (8%)

Query: 43  EEAGDMVAAQADENVGEAGRSLLESPGLTSGSDTPQQDN-DQLNSEEKK--KRKQRRNRT 99
           EE  D+   +A+E+  +A  S+     L+  +  PQ D    ++SE     KRKQRR+RT
Sbjct: 167 EEEADLERKEAEESEKKAKHSI--DGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRT 224

Query: 100 TFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLAN 159
           TF + QL+ LER FERTHYPD + RE+LA+R  LTEARVQVWF NRRA++R+      AN
Sbjct: 225 TFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAG---AN 281

Query: 160 KNASLLKSYSGDVTAVEQPIVPRPAPRPTDY--------LSWGTASPYRSSSLPRCCLHE 211
           +  +      G       P +P      T Y        +S  +++ +R   LP   +H+
Sbjct: 282 QLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQ 341


>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
          Length = 484

 Score =  104 bits (259), Expect = 7e-23
 Identities = 68/180 (37%), Positives = 97/180 (53%), Gaps = 16/180 (8%)

Query: 43  EEAGDMVAAQADENVGEAGRSLLESPGLTSGSDTPQQDN-DQLNSEEKK--KRKQRRNRT 99
           EE  D+   +A+E+  +A  S+     L+  +  PQ D    ++SE     KRKQRR+RT
Sbjct: 167 EEEADLERKEAEESEKKAKHSI--DGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRT 224

Query: 100 TFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLAN 159
           TF + QL+ LER FERTHYPD + RE+LA+R  LTEARVQVWF NRRA++R+      AN
Sbjct: 225 TFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAG---AN 281

Query: 160 KNASLLKSYSGDVTAVEQPIVPRPAPRPTDY--------LSWGTASPYRSSSLPRCCLHE 211
           +  +      G       P +P      T Y        +S  +++ +R   LP   +H+
Sbjct: 282 QLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQ 341


>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
          Length = 479

 Score =  104 bits (259), Expect = 7e-23
 Identities = 68/180 (37%), Positives = 97/180 (53%), Gaps = 16/180 (8%)

Query: 43  EEAGDMVAAQADENVGEAGRSLLESPGLTSGSDTPQQDN-DQLNSEEKK--KRKQRRNRT 99
           EE  D+   +A+E+  +A  S+     L+  +  PQ D    ++SE     KRKQRR+RT
Sbjct: 167 EEEADLERKEAEESEKKAKHSI--DGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRT 224

Query: 100 TFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLAN 159
           TF + QL+ LER FERTHYPD + RE+LA+R  LTEARVQVWF NRRA++R+      AN
Sbjct: 225 TFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAG---AN 281

Query: 160 KNASLLKSYSGDVTAVEQPIVPRPAPRPTDY--------LSWGTASPYRSSSLPRCCLHE 211
           +  +      G       P +P      T Y        +S  +++ +R   LP   +H+
Sbjct: 282 QLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQ 341


>gi|189083681 paired box gene 6 isoform a [Homo sapiens]
          Length = 422

 Score =  104 bits (259), Expect = 7e-23
 Identities = 57/126 (45%), Positives = 79/126 (62%), Gaps = 9/126 (7%)

Query: 71  TSGSDTPQQDNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARR 130
           T+   +  +D+D+     + KRK +RNRT+F   Q++ALE+ FERTHYPD F RE LA +
Sbjct: 187 TNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAK 246

Query: 131 VNLTEARVQVWFQNRRAKFRRNERAMLANKNASLLKSY----SGDVTAVEQPIVPRPAPR 186
           ++L EAR+QVWF NRRAK+RR E+     + AS   S+    S   T+V QPI     P+
Sbjct: 247 IDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIPISSSFSTSVYQPI-----PQ 301

Query: 187 PTDYLS 192
           PT  +S
Sbjct: 302 PTTPVS 307


>gi|4580424 paired box gene 6 isoform b [Homo sapiens]
          Length = 436

 Score =  104 bits (259), Expect = 7e-23
 Identities = 57/126 (45%), Positives = 79/126 (62%), Gaps = 9/126 (7%)

Query: 71  TSGSDTPQQDNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARR 130
           T+   +  +D+D+     + KRK +RNRT+F   Q++ALE+ FERTHYPD F RE LA +
Sbjct: 201 TNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAK 260

Query: 131 VNLTEARVQVWFQNRRAKFRRNERAMLANKNASLLKSY----SGDVTAVEQPIVPRPAPR 186
           ++L EAR+QVWF NRRAK+RR E+     + AS   S+    S   T+V QPI     P+
Sbjct: 261 IDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIPISSSFSTSVYQPI-----PQ 315

Query: 187 PTDYLS 192
           PT  +S
Sbjct: 316 PTTPVS 321


>gi|4505615 paired box gene 6 isoform a [Homo sapiens]
          Length = 422

 Score =  104 bits (259), Expect = 7e-23
 Identities = 57/126 (45%), Positives = 79/126 (62%), Gaps = 9/126 (7%)

Query: 71  TSGSDTPQQDNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARR 130
           T+   +  +D+D+     + KRK +RNRT+F   Q++ALE+ FERTHYPD F RE LA +
Sbjct: 187 TNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAK 246

Query: 131 VNLTEARVQVWFQNRRAKFRRNERAMLANKNASLLKSY----SGDVTAVEQPIVPRPAPR 186
           ++L EAR+QVWF NRRAK+RR E+     + AS   S+    S   T+V QPI     P+
Sbjct: 247 IDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIPISSSFSTSVYQPI-----PQ 301

Query: 187 PTDYLS 192
           PT  +S
Sbjct: 302 PTTPVS 307


>gi|46249382 paired-like homeobox 2a [Homo sapiens]
          Length = 284

 Score =  104 bits (259), Expect = 7e-23
 Identities = 51/82 (62%), Positives = 62/82 (75%)

Query: 90  KKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKF 149
           +KRKQRR RTTF S+QL+ LERVF  THYPD + RE+LA +++LTEARVQVWFQNRRAKF
Sbjct: 86  EKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKF 145

Query: 150 RRNERAMLANKNASLLKSYSGD 171
           R+ ERA  A   A    +  G+
Sbjct: 146 RKQERAASAKGAAGAAGAKKGE 167


>gi|4505619 paired box 7 isoform 1 [Homo sapiens]
          Length = 520

 Score =  103 bits (258), Expect = 9e-23
 Identities = 67/176 (38%), Positives = 94/176 (53%), Gaps = 21/176 (11%)

Query: 43  EEAGDMVAAQADENV-GEAGRSLLESPGLTSGSDTPQQDNDQLNSEEKKKRKQRRNRTTF 101
           E+ G+  A  + + + G+ G  L E   + S  D P             KRKQRR+RTTF
Sbjct: 177 EDDGEKKAKHSIDGILGDKGNRLDEGSDVESEPDLPL------------KRKQRRSRTTF 224

Query: 102 NSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLANKN 161
            + QL+ LE+ FERTHYPD + RE+LA+R  LTEARVQVWF NRRA++R+      AN+ 
Sbjct: 225 TAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAG---ANQL 281

Query: 162 ASLLKSYSGDVTAVEQPIVP----RPAPRPTDYLSW-GTASPYRSSSLPRCCLHEG 212
           A+      G       P +P      +  PT  +S  G ++ +R   LP   +H+G
Sbjct: 282 AAFNHLLPGGFPPTGMPTLPPYQLPDSTYPTTTISQDGGSTVHRPQPLPPSTMHQG 337


>gi|7524359 paired box 7 isoform 2 [Homo sapiens]
          Length = 518

 Score =  103 bits (258), Expect = 9e-23
 Identities = 67/176 (38%), Positives = 94/176 (53%), Gaps = 21/176 (11%)

Query: 43  EEAGDMVAAQADENV-GEAGRSLLESPGLTSGSDTPQQDNDQLNSEEKKKRKQRRNRTTF 101
           E+ G+  A  + + + G+ G  L E   + S  D P             KRKQRR+RTTF
Sbjct: 175 EDDGEKKAKHSIDGILGDKGNRLDEGSDVESEPDLPL------------KRKQRRSRTTF 222

Query: 102 NSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLANKN 161
            + QL+ LE+ FERTHYPD + RE+LA+R  LTEARVQVWF NRRA++R+      AN+ 
Sbjct: 223 TAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAG---ANQL 279

Query: 162 ASLLKSYSGDVTAVEQPIVP----RPAPRPTDYLSW-GTASPYRSSSLPRCCLHEG 212
           A+      G       P +P      +  PT  +S  G ++ +R   LP   +H+G
Sbjct: 280 AAFNHLLPGGFPPTGMPTLPPYQLPDSTYPTTTISQDGGSTVHRPQPLPPSTMHQG 335


>gi|207029223 paired box 7 isoform 3 [Homo sapiens]
          Length = 505

 Score =  103 bits (258), Expect = 9e-23
 Identities = 67/176 (38%), Positives = 94/176 (53%), Gaps = 21/176 (11%)

Query: 43  EEAGDMVAAQADENV-GEAGRSLLESPGLTSGSDTPQQDNDQLNSEEKKKRKQRRNRTTF 101
           E+ G+  A  + + + G+ G  L E   + S  D P             KRKQRR+RTTF
Sbjct: 177 EDDGEKKAKHSIDGILGDKGNRLDEGSDVESEPDLPL------------KRKQRRSRTTF 224

Query: 102 NSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLANKN 161
            + QL+ LE+ FERTHYPD + RE+LA+R  LTEARVQVWF NRRA++R+      AN+ 
Sbjct: 225 TAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAG---ANQL 281

Query: 162 ASLLKSYSGDVTAVEQPIVP----RPAPRPTDYLSW-GTASPYRSSSLPRCCLHEG 212
           A+      G       P +P      +  PT  +S  G ++ +R   LP   +H+G
Sbjct: 282 AAFNHLLPGGFPPTGMPTLPPYQLPDSTYPTTTISQDGGSTVHRPQPLPPSTMHQG 337


>gi|12707580 paired-like homeobox 2b [Homo sapiens]
          Length = 314

 Score =  103 bits (257), Expect = 1e-22
 Identities = 49/69 (71%), Positives = 58/69 (84%)

Query: 90  KKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKF 149
           +KRKQRR RTTF S+QL+ LERVF  THYPD + RE+LA +++LTEARVQVWFQNRRAKF
Sbjct: 94  EKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKF 153

Query: 150 RRNERAMLA 158
           R+ ERA  A
Sbjct: 154 RKQERAAAA 162


>gi|24497589 aristaless related homeobox [Homo sapiens]
          Length = 562

 Score =  103 bits (257), Expect = 1e-22
 Identities = 64/150 (42%), Positives = 87/150 (58%), Gaps = 16/150 (10%)

Query: 61  GRSLLESPGLTSGSDTPQQDNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPD 120
           G+   +S  L++GSD+          E   KRKQRR RTTF S QL+ LER F++THYPD
Sbjct: 304 GKDGEDSVCLSAGSDS---------EEGLLKRKQRRYRTTFTSYQLEELERAFQKTHYPD 354

Query: 121 AFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLANKNASLLKSYSGDVTAVE--QP 178
            F RE+LA R++LTEARVQVWFQNRRAK+R+ E+A        L   + G ++A     P
Sbjct: 355 VFTREELAMRLDLTEARVQVWFQNRRAKWRKREKAGAQTHPPGL--PFPGPLSATHPLSP 412

Query: 179 IV---PRPAPRPTDYLSWGTASPYRSSSLP 205
            +   P P   P    +W  A+   +++ P
Sbjct: 413 YLDASPFPPHHPALDSAWTAAAAAAAAAFP 442


>gi|122937484 dorsal root ganglia homeobox [Homo sapiens]
          Length = 268

 Score =  102 bits (255), Expect = 2e-22
 Identities = 47/64 (73%), Positives = 55/64 (85%)

Query: 91  KRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFR 150
           +RKQRRNRTTF   QL+ALE VF +THYPD F RE+LA ++NLTEARVQVWFQNRRAK+R
Sbjct: 35  RRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWR 94

Query: 151 RNER 154
           + ER
Sbjct: 95  KTER 98


>gi|55743092 aristaless-like homeobox 4 [Homo sapiens]
          Length = 411

 Score =  101 bits (251), Expect = 6e-22
 Identities = 54/99 (54%), Positives = 67/99 (67%), Gaps = 5/99 (5%)

Query: 56  NVGEAGRSLLESPGLTSGSDTPQQDNDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFER 115
           +V EAG   ++ P   + SD P          E  K K+RRNRTTF S QL+ LE+VF++
Sbjct: 181 SVKEAG---VKGPQDRASSDLPSPLEKA--DSESNKGKKRRNRTTFTSYQLEELEKVFQK 235

Query: 116 THYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNER 154
           THYPD + RE LA R +LTEARVQVWFQNRRAK+R+ ER
Sbjct: 236 THYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 274


>gi|14249388 retina and anterior neural fold homeobox 2 [Homo
           sapiens]
          Length = 184

 Score =  101 bits (251), Expect = 6e-22
 Identities = 60/125 (48%), Positives = 69/125 (55%), Gaps = 15/125 (12%)

Query: 87  EEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRR 146
           EE  K+K RRNRTTF + QL  LER FE +HYPD + RE+LA +V+L E RVQVWFQNRR
Sbjct: 20  EEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRR 79

Query: 147 AKFRRNERAMLANKNASLLKSYSGDVTAVEQPIVP-----RPAPRPTDYLSWGTASPYRS 201
           AK+RR ER          L+S SG V A   P  P     RP         W    P   
Sbjct: 80  AKWRRQER----------LESGSGAVAAPRLPEAPALPFARPPAMSLPLEPWLGPGPPAV 129

Query: 202 SSLPR 206
             LPR
Sbjct: 130 PGLPR 134


>gi|113204604 aristaless-like homeobox 3 [Homo sapiens]
          Length = 343

 Score = 99.4 bits (246), Expect = 2e-21
 Identities = 45/66 (68%), Positives = 56/66 (84%)

Query: 89  KKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAK 148
           K K K+RRNRTTF++ QL+ LE+VF++THYPD + RE LA R +LTEARVQVWFQNRRAK
Sbjct: 148 KNKSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAK 207

Query: 149 FRRNER 154
           +R+ ER
Sbjct: 208 WRKRER 213


>gi|89145413 short stature homeobox 2 isoform a [Homo sapiens]
          Length = 331

 Score = 96.3 bits (238), Expect = 2e-20
 Identities = 54/113 (47%), Positives = 70/113 (61%), Gaps = 11/113 (9%)

Query: 47  DMVAAQADENVGEAGRSLLESPGLTSGSDT---PQQDNDQLNSEEKKKRKQRRNRTTFNS 103
           DM AA+     G        SP LT  S      ++D   +  E + K KQRR+RT F  
Sbjct: 98  DMGAAERSREPG--------SPRLTEVSPELKDRKEDAKGMEDEGQTKIKQRRSRTNFTL 149

Query: 104 SQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAM 156
            QL  LER+F+ THYPDAF+RE+L++R+ L+EARVQVWFQNRRAK R+ E  +
Sbjct: 150 EQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQL 202


>gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens]
          Length = 326

 Score = 95.9 bits (237), Expect = 2e-20
 Identities = 44/62 (70%), Positives = 53/62 (85%)

Query: 93  KQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRN 152
           K+RR+RTTF S QL+ LE+VF++THYPD +VRE LA R  LTEARVQVWFQNRRAK+R+ 
Sbjct: 131 KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKR 190

Query: 153 ER 154
           ER
Sbjct: 191 ER 192


>gi|6031203 short stature homeobox isoform SHOXb [Homo sapiens]
          Length = 225

 Score = 95.1 bits (235), Expect = 4e-20
 Identities = 59/153 (38%), Positives = 87/153 (56%), Gaps = 12/153 (7%)

Query: 16  GGRLDSPGNLDTLQA------KKNFSVSHLLDLEEAGDMVAAQADENVGEAGRSLLESPG 69
           GG+ DS    + L++      +   S S L D+ E G        ++  +  +  L+  G
Sbjct: 27  GGKKDSITYREVLESGLARSRELGTSDSSLQDITEGGGHCPVHLFKDHVDNDKEKLKEFG 86

Query: 70  ---LTSGSDTPQQDNDQLNSEEKK---KRKQRRNRTTFNSSQLQALERVFERTHYPDAFV 123
              +  G    ++  + + SE++    K KQRR+RT F   QL  LER+F+ THYPDAF+
Sbjct: 87  TARVAEGIYECKEKREDVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFM 146

Query: 124 REDLARRVNLTEARVQVWFQNRRAKFRRNERAM 156
           RE+L++R+ L+EARVQVWFQNRRAK R+ E  M
Sbjct: 147 REELSQRLGLSEARVQVWFQNRRAKCRKQENQM 179


>gi|4506943 short stature homeobox isoform SHOXa [Homo sapiens]
          Length = 292

 Score = 95.1 bits (235), Expect = 4e-20
 Identities = 59/153 (38%), Positives = 87/153 (56%), Gaps = 12/153 (7%)

Query: 16  GGRLDSPGNLDTLQA------KKNFSVSHLLDLEEAGDMVAAQADENVGEAGRSLLESPG 69
           GG+ DS    + L++      +   S S L D+ E G        ++  +  +  L+  G
Sbjct: 27  GGKKDSITYREVLESGLARSRELGTSDSSLQDITEGGGHCPVHLFKDHVDNDKEKLKEFG 86

Query: 70  ---LTSGSDTPQQDNDQLNSEEKK---KRKQRRNRTTFNSSQLQALERVFERTHYPDAFV 123
              +  G    ++  + + SE++    K KQRR+RT F   QL  LER+F+ THYPDAF+
Sbjct: 87  TARVAEGIYECKEKREDVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFM 146

Query: 124 REDLARRVNLTEARVQVWFQNRRAKFRRNERAM 156
           RE+L++R+ L+EARVQVWFQNRRAK R+ E  M
Sbjct: 147 REELSQRLGLSEARVQVWFQNRRAKCRKQENQM 179


>gi|24234708 paired-like homeodomain transcription factor 2 isoform
           b [Homo sapiens]
          Length = 317

 Score = 94.0 bits (232), Expect = 9e-20
 Identities = 50/106 (47%), Positives = 67/106 (63%), Gaps = 5/106 (4%)

Query: 66  ESPGLTSGSDTPQQDNDQLNSEE-KKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVR 124
           + PG      + Q  N+ + +E+  KK++QRR RT F S QLQ LE  F+R  YPD   R
Sbjct: 56  QHPGANEKDKSQQGKNEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTR 115

Query: 125 EDLARRVNLTEARVQVWFQNRRAKFRRNERAMLANKNASLLKSYSG 170
           E++A   NLTEARV+VWF+NRRAK+R+ ER    N+ A L K+  G
Sbjct: 116 EEIAVWTNLTEARVRVWFKNRRAKWRKRER----NQQAELCKNGFG 157


>gi|87044888 short stature homeobox 2 isoform b [Homo sapiens]
          Length = 190

 Score = 93.6 bits (231), Expect = 1e-19
 Identities = 43/73 (58%), Positives = 56/73 (76%)

Query: 84  LNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQ 143
           +  E + K KQRR+RT F   QL  LER+F+ THYPDAF+RE+L++R+ L+EARVQVWFQ
Sbjct: 1   MEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQ 60

Query: 144 NRRAKFRRNERAM 156
           NRRAK R+ E  +
Sbjct: 61  NRRAKCRKQENQL 73


>gi|21361183 paired-like homeodomain transcription factor 2 isoform
           c [Homo sapiens]
          Length = 324

 Score = 92.0 bits (227), Expect = 3e-19
 Identities = 50/105 (47%), Positives = 66/105 (62%), Gaps = 5/105 (4%)

Query: 67  SPGLTSGSDTPQQDNDQLNSEE-KKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVRE 125
           SP       + Q  N+ + +E+  KK++QRR RT F S QLQ LE  F+R  YPD   RE
Sbjct: 64  SPEAAEKDKSQQGKNEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTRE 123

Query: 126 DLARRVNLTEARVQVWFQNRRAKFRRNERAMLANKNASLLKSYSG 170
           ++A   NLTEARV+VWF+NRRAK+R+ ER    N+ A L K+  G
Sbjct: 124 EIAVWTNLTEARVRVWFKNRRAKWRKRER----NQQAELCKNGFG 164


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.129    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,655,623
Number of Sequences: 37866
Number of extensions: 385544
Number of successful extensions: 1945
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 1543
Number of HSP's gapped (non-prelim): 431
length of query: 217
length of database: 18,247,518
effective HSP length: 98
effective length of query: 119
effective length of database: 14,536,650
effective search space: 1729861350
effective search space used: 1729861350
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.