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Search of human proteins with 58331268
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|58331268 excision repair protein ERCC6-like [Homo sapiens]
(1250 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|58331268 excision repair protein ERCC6-like [Homo sapiens] 2467 0.0
gi|4557565 excision repair cross-complementing rodent repair def... 338 2e-92
gi|6912622 RAD54 homolog B [Homo sapiens] 272 2e-72
gi|164419749 SWI/SNF-related matrix-associated actin-dependent r... 256 9e-68
gi|216548193 RAD54-like protein [Homo sapiens] 251 4e-66
gi|216548186 RAD54-like protein [Homo sapiens] 251 4e-66
gi|21071044 SWI/SNF-related matrix-associated actin-dependent re... 249 2e-65
gi|58219008 RAD26L hypothetical protein [Homo sapiens] 243 8e-64
gi|21071058 SWI/SNF-related matrix-associated actin-dependent re... 242 1e-63
gi|21914927 helicase, lymphoid-specific [Homo sapiens] 229 1e-59
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 227 6e-59
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 224 5e-58
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 224 5e-58
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 224 5e-58
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 224 5e-58
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 224 5e-58
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 224 5e-58
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 224 5e-58
gi|114326455 chromodomain helicase DNA binding protein 8 [Homo s... 222 2e-57
gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription facto... 221 3e-57
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 221 4e-57
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 220 8e-57
gi|190358536 SWI/SNF-related, matrix-associated actin-dependent ... 219 2e-56
gi|190358532 SWI/SNF-related, matrix-associated actin-dependent ... 219 2e-56
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 218 3e-56
gi|190358534 SWI/SNF-related, matrix-associated actin-dependent ... 216 8e-56
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 213 1e-54
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 213 1e-54
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 212 2e-54
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 212 2e-54
>gi|58331268 excision repair protein ERCC6-like [Homo sapiens]
Length = 1250
Score = 2467 bits (6395), Expect = 0.0
Identities = 1250/1250 (100%), Positives = 1250/1250 (100%)
Query: 1 MEASRRFPEAEALSPEQAAHYLRYVKEAKEATKNGDLEEAFKLFNLAKDIFPNEKVLSRI 60
MEASRRFPEAEALSPEQAAHYLRYVKEAKEATKNGDLEEAFKLFNLAKDIFPNEKVLSRI
Sbjct: 1 MEASRRFPEAEALSPEQAAHYLRYVKEAKEATKNGDLEEAFKLFNLAKDIFPNEKVLSRI 60
Query: 61 QKIQEALEELAEQGDDEFTDVCNSGLLLYRELHNQLFEHQKEGIAFLYSLYRDGRKGGIL 120
QKIQEALEELAEQGDDEFTDVCNSGLLLYRELHNQLFEHQKEGIAFLYSLYRDGRKGGIL
Sbjct: 61 QKIQEALEELAEQGDDEFTDVCNSGLLLYRELHNQLFEHQKEGIAFLYSLYRDGRKGGIL 120
Query: 121 ADDMGLGKTVQIIAFLSGMFDASLVNHVLLIMPTNLINTWVKEFIKWTPGMRVKTFHGPS 180
ADDMGLGKTVQIIAFLSGMFDASLVNHVLLIMPTNLINTWVKEFIKWTPGMRVKTFHGPS
Sbjct: 121 ADDMGLGKTVQIIAFLSGMFDASLVNHVLLIMPTNLINTWVKEFIKWTPGMRVKTFHGPS 180
Query: 181 KDERTRNLNRIQQRNGVIITTYQMLINNWQQLSSFRGQEFVWDYVILDEAHKIKTSSTKS 240
KDERTRNLNRIQQRNGVIITTYQMLINNWQQLSSFRGQEFVWDYVILDEAHKIKTSSTKS
Sbjct: 181 KDERTRNLNRIQQRNGVIITTYQMLINNWQQLSSFRGQEFVWDYVILDEAHKIKTSSTKS 240
Query: 241 AICARAIPASNRLLLTGTPIQNNLQELWSLFDFACQGSLLGTLKTFKMEYENPITRAREK 300
AICARAIPASNRLLLTGTPIQNNLQELWSLFDFACQGSLLGTLKTFKMEYENPITRAREK
Sbjct: 241 AICARAIPASNRLLLTGTPIQNNLQELWSLFDFACQGSLLGTLKTFKMEYENPITRAREK 300
Query: 301 DATPGEKALGFKISENLMAIIKPYFLRRTKEDVQKKKSSNPEARLNEKNPDVDAICEMPS 360
DATPGEKALGFKISENLMAIIKPYFLRRTKEDVQKKKSSNPEARLNEKNPDVDAICEMPS
Sbjct: 301 DATPGEKALGFKISENLMAIIKPYFLRRTKEDVQKKKSSNPEARLNEKNPDVDAICEMPS 360
Query: 361 LSRKNDLIIWIRLVPLQEEIYRKFVSLDHIKELLMETRSPLAELGVLKKLCDHPRLLSAR 420
LSRKNDLIIWIRLVPLQEEIYRKFVSLDHIKELLMETRSPLAELGVLKKLCDHPRLLSAR
Sbjct: 361 LSRKNDLIIWIRLVPLQEEIYRKFVSLDHIKELLMETRSPLAELGVLKKLCDHPRLLSAR 420
Query: 421 ACCLLNLGTFSAQDGNEGEDSPDVDHIDQVTDDTLMEESGKMIFLMDLLKRLRDEGHQTL 480
ACCLLNLGTFSAQDGNEGEDSPDVDHIDQVTDDTLMEESGKMIFLMDLLKRLRDEGHQTL
Sbjct: 421 ACCLLNLGTFSAQDGNEGEDSPDVDHIDQVTDDTLMEESGKMIFLMDLLKRLRDEGHQTL 480
Query: 481 VFSQSRQILNIIERLLKNRHFKTLRIDGTVTHLLEREKRINLFQQNKDYSVFLLTTQVGG 540
VFSQSRQILNIIERLLKNRHFKTLRIDGTVTHLLEREKRINLFQQNKDYSVFLLTTQVGG
Sbjct: 481 VFSQSRQILNIIERLLKNRHFKTLRIDGTVTHLLEREKRINLFQQNKDYSVFLLTTQVGG 540
Query: 541 VGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVF 600
VGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVF
Sbjct: 541 VGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVF 600
Query: 601 KDSLIRQTTGEKKNPFRYFSKQELRELFTIEDLQNSVTQLQLQSLHAAQRKSDIKLDEHI 660
KDSLIRQTTGEKKNPFRYFSKQELRELFTIEDLQNSVTQLQLQSLHAAQRKSDIKLDEHI
Sbjct: 601 KDSLIRQTTGEKKNPFRYFSKQELRELFTIEDLQNSVTQLQLQSLHAAQRKSDIKLDEHI 660
Query: 661 AYLQSLGIAGISDHDLMYTCDLSVKEELDVVEESHYIQQRVQKAQFLVEFESQNKEFLME 720
AYLQSLGIAGISDHDLMYTCDLSVKEELDVVEESHYIQQRVQKAQFLVEFESQNKEFLME
Sbjct: 661 AYLQSLGIAGISDHDLMYTCDLSVKEELDVVEESHYIQQRVQKAQFLVEFESQNKEFLME 720
Query: 721 QQRTRNEGAWLREPVFPSSTKKKCPKLNKPQPQPSPLLSTHHTQEEDISSKMASVVIDDL 780
QQRTRNEGAWLREPVFPSSTKKKCPKLNKPQPQPSPLLSTHHTQEEDISSKMASVVIDDL
Sbjct: 721 QQRTRNEGAWLREPVFPSSTKKKCPKLNKPQPQPSPLLSTHHTQEEDISSKMASVVIDDL 780
Query: 781 PKEGEKQDLSSIKVNVTTLQDGKGTGSADSIATLPKGFGSVEELCTNSSLGMEKSFATKN 840
PKEGEKQDLSSIKVNVTTLQDGKGTGSADSIATLPKGFGSVEELCTNSSLGMEKSFATKN
Sbjct: 781 PKEGEKQDLSSIKVNVTTLQDGKGTGSADSIATLPKGFGSVEELCTNSSLGMEKSFATKN 840
Query: 841 EAVQKETLQEGPKQEALQEDPLESFNYVLSKSTKADIGPNLDQLKDDEILRHCNPWPIIS 900
EAVQKETLQEGPKQEALQEDPLESFNYVLSKSTKADIGPNLDQLKDDEILRHCNPWPIIS
Sbjct: 841 EAVQKETLQEGPKQEALQEDPLESFNYVLSKSTKADIGPNLDQLKDDEILRHCNPWPIIS 900
Query: 901 ITNESQNAESNVSIIEIADDLSASHSALQDAQASEAKLEEEPSASSPQYACDFNLFLEDS 960
ITNESQNAESNVSIIEIADDLSASHSALQDAQASEAKLEEEPSASSPQYACDFNLFLEDS
Sbjct: 901 ITNESQNAESNVSIIEIADDLSASHSALQDAQASEAKLEEEPSASSPQYACDFNLFLEDS 960
Query: 961 ADNRQNFSSQSLEHVEKENSLCGSAPNSRAGFVHSKTCLSWEFSEKDDEPEEVVVKAKIR 1020
ADNRQNFSSQSLEHVEKENSLCGSAPNSRAGFVHSKTCLSWEFSEKDDEPEEVVVKAKIR
Sbjct: 961 ADNRQNFSSQSLEHVEKENSLCGSAPNSRAGFVHSKTCLSWEFSEKDDEPEEVVVKAKIR 1020
Query: 1021 SKARRIVSDGEDEDDSFKDTSSINPFNTSLFQFSSVKQFDASTPKNDISPPGRFFSSQIP 1080
SKARRIVSDGEDEDDSFKDTSSINPFNTSLFQFSSVKQFDASTPKNDISPPGRFFSSQIP
Sbjct: 1021 SKARRIVSDGEDEDDSFKDTSSINPFNTSLFQFSSVKQFDASTPKNDISPPGRFFSSQIP 1080
Query: 1081 SSVNKSMNSRRSLASRRSLINMVLDHVEDMEERLDDSSEAKGPEDYPEEGVEESSGEASK 1140
SSVNKSMNSRRSLASRRSLINMVLDHVEDMEERLDDSSEAKGPEDYPEEGVEESSGEASK
Sbjct: 1081 SSVNKSMNSRRSLASRRSLINMVLDHVEDMEERLDDSSEAKGPEDYPEEGVEESSGEASK 1140
Query: 1141 YTEEDPSGETLSSENKSSWLMTSKPSALAQETSLGAPEPLSGEQLVGSPQDKAAEATNDY 1200
YTEEDPSGETLSSENKSSWLMTSKPSALAQETSLGAPEPLSGEQLVGSPQDKAAEATNDY
Sbjct: 1141 YTEEDPSGETLSSENKSSWLMTSKPSALAQETSLGAPEPLSGEQLVGSPQDKAAEATNDY 1200
Query: 1201 ETLVKRGKELKECGKIQEALNCLVKALDIKSADPEVMLLTLSLYKQLNNN 1250
ETLVKRGKELKECGKIQEALNCLVKALDIKSADPEVMLLTLSLYKQLNNN
Sbjct: 1201 ETLVKRGKELKECGKIQEALNCLVKALDIKSADPEVMLLTLSLYKQLNNN 1250
>gi|4557565 excision repair cross-complementing rodent repair
deficiency, complementation group 6 [Homo sapiens]
Length = 1493
Score = 338 bits (866), Expect = 2e-92
Identities = 208/579 (35%), Positives = 316/579 (54%), Gaps = 68/579 (11%)
Query: 67 LEELAEQGDDEFTDVCNSGLLLYRELHNQLFEHQKEGIAFLYSLYRDGRKGGILADDMGL 126
LE+ +E+ D EF + G + L +LF++Q+ G+ +L+ L+ + GGIL D+MGL
Sbjct: 482 LEDDSEESDAEFDE----GFKVPGFLFKKLFKYQQTGVRWLWELHCQ-QAGGILGDEMGL 536
Query: 127 GKTVQIIAFLSGMFDASL-----------VNHVLLIMPTNLINTWVKEFIKWTPGMRVKT 175
GKT+QIIAFL+G+ + + + +++ PT +++ WVKEF W P RV
Sbjct: 537 GKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVAI 596
Query: 176 FH--GPSKDERTRNLNRIQQRNGVIITTYQMLINNWQQLSSFRGQEFVWDYVILDEAHKI 233
H G ++ + + + +G++IT+Y + +S + W YVILDE HKI
Sbjct: 597 LHETGSYTHKKEKLIRDVAHCHGILITSYSYIRLMQDDISRYD-----WHYVILDEGHKI 651
Query: 234 KTSSTKSAICARAIPASNRLLLTGTPIQNNLQELWSLFDFACQGSLLGTLKTFKMEYENP 293
+ + + + +R++L+G+P+QNNL+ELWSLFDF G L GTL F ++ P
Sbjct: 652 RNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKL-GTLPVFMEQFSVP 710
Query: 294 ITRAREKDATPGEKALGFKISENLMAIIKPYFLRRTKEDVQKKKSSNPEARLNEKNPDVD 353
IT +A+P + +K + L I PY LRR K DV+ S
Sbjct: 711 ITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSDVKMSLS--------------- 755
Query: 354 AICEMPSLSRKNDLIIWIRLVPLQEEIYRKFVSLDHIKELLMETRSPLAELGVLKKLCDH 413
L KN+ +++ RL Q ++Y+ FV + +L + L L+K+C+H
Sbjct: 756 -------LPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNGEMQIFSGLIALRKICNH 808
Query: 414 PRLLSARACCLLNLGTFSAQDGNEGEDSPDVDHIDQVTDDTL--MEESGKMIFLMDLLKR 471
P L S L L PD D++ +D + SGKMI + LLK
Sbjct: 809 PDLFSGGPKNLKGL--------------PD----DELEEDQFGYWKRSGKMIVVESLLKI 850
Query: 472 LRDEGHQTLVFSQSRQILNIIERLLKNRHFKTLRIDGTVTHLLEREKRINLFQQNKDYSV 531
+G + L+FSQSRQ+L+I+E L+ + + L++DGT T + R+ I + ++ V
Sbjct: 851 WHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTT-IASRQPLITRYNEDTSIFV 909
Query: 532 FLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVE 591
FLLTT+VGG+G+ LT A RVVI+DP WNP+TD QA +R +RIGQK+ V VYRL+T GT+E
Sbjct: 910 FLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIE 969
Query: 592 EKIYRRQVFKDSLIRQTTGEKKNPFRYFSKQELRELFTI 630
EKIY RQ+FK L + + K R+F +L ELFT+
Sbjct: 970 EKIYHRQIFKQFLTNRVLKDPKQR-RFFKSNDLYELFTL 1007
>gi|6912622 RAD54 homolog B [Homo sapiens]
Length = 910
Score = 272 bits (695), Expect = 2e-72
Identities = 188/565 (33%), Positives = 299/565 (52%), Gaps = 65/565 (11%)
Query: 99 HQKEGIAFLYS----LYRDGRKGGILADDMGLGKTVQIIAFL-----SGMFDAS-LVNHV 148
HQKEGI FLY + +GR G ILAD+MGLGKT+Q I+ + G + ++
Sbjct: 299 HQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVIKKT 358
Query: 149 LLIMPTNLINTWVKEFIKWTPGMRVKTFHGPSKDERTRNLNRIQQRNGVIITTYQMLINN 208
L++ P +L+N W KEF KW R+K F + + I V+I +Y+ML+ +
Sbjct: 359 LIVTPGSLVNNWKKEFQKWLGSERIKIFTVDQDHKVEEFIKSIFY--SVLIISYEMLLRS 416
Query: 209 WQQLSSFRGQEFVWDYVILDEAHKIKTSSTKSAICARAIPASNRLLLTGTPIQNNLQELW 268
Q+ + + +D +I DE H++K S+ K+ ++ R++LTGTPIQN+LQE +
Sbjct: 417 LDQIKNIK-----FDLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGTPIQNDLQEFF 471
Query: 269 SLFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAIIKPYFLRR 328
+L DF G +LG+L +++ YE PI +RE A+ EK LG + + L + + LRR
Sbjct: 472 ALIDFVNPG-ILGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAELTCLTGLFILRR 530
Query: 329 TKEDVQKKKSSNPEARLNEKNPDVDAICEMPSLSRKNDLIIWIRLVPLQEEIYRKFVSLD 388
T+E + K L K + +++ R LQ E+YRK ++
Sbjct: 531 TQEIINK------------------------YLPPKIENVVFCRPGALQIELYRKLLNSQ 566
Query: 389 HIK---ELLMETRSPLAELGVLKKLCDHPRLL----SARACCLLNLGTFSAQDGNEGED- 440
++ + L+E L +G LKKLC+HP LL + C S D NE +
Sbjct: 567 VVRFCLQGLLENSPHLICIGALKKLCNHPCLLFNSIKEKECS-------STCDKNEEKSL 619
Query: 441 SPDVDHIDQVTDDTLM---EESGKMIFLMDLLKRLRD--EGHQTLVFSQSRQILNIIERL 495
+ + + L+ +ESGK+ L LL + + + ++ S Q LNI++ +
Sbjct: 620 YKGLLSVFPADYNPLLFTEKESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQEV 679
Query: 496 LKNRHFKTLRIDGTVTHLLEREKRINLF-QQNKDYSVFLLTTQVGGVGLTLTAATRVVIF 554
K + R+DG T + +R++ ++ F Q+ + +FLL+++ GGVGL L + ++++
Sbjct: 680 CKRHGYAYTRLDGQ-TPISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILY 738
Query: 555 DPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTG-EKK 613
D WNPATD QA+ RV+R GQK V +YRL+T GT+EEKIY+RQ+ K L K
Sbjct: 739 DIDWNPATDIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTKT 798
Query: 614 NPFRYFSKQELRELFTIEDLQNSVT 638
+ FS +EL+ LFT+ + + VT
Sbjct: 799 SEHIQFSVEELKNLFTLHESSDCVT 823
>gi|164419749 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform b [Homo sapiens]
Length = 1042
Score = 256 bits (654), Expect = 9e-68
Identities = 213/686 (31%), Positives = 333/686 (48%), Gaps = 121/686 (17%)
Query: 96 LFEHQKEGIAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLSGMFD-ASLVNHVLLIMPT 154
L ++Q G+ +L SLY +G GILAD+MGLGKT+Q IA L + ++ ++++P
Sbjct: 183 LRDYQIRGLNWLISLYENG-VNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPK 241
Query: 155 NLINTWVKEFIKWTPGMRVKTFHGPSKDERTRNLNRIQQRNG---VIITTYQMLINNWQQ 211
+ ++ W+ EF +W P +RV F G KD R + R + G V +T+Y+M+I ++
Sbjct: 242 STLHNWMNEFKRWVPSLRVICFVG-DKDARAAFI-RDEMMPGEWDVCVTSYEMVI---KE 296
Query: 212 LSSFRGQEFVWDYVILDEAHKIKTSSTKSAICARAIPASNRLLLTGTPIQNNLQELWSLF 271
S F+ +F W Y+++DEAH+IK +K + R ++NRLLLTGTP+QNNL ELW+L
Sbjct: 297 KSVFK--KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALL 354
Query: 272 DFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGF-KISENLMAIIKPYFLRRTK 330
+F + + F ++ + LG K+ E L A++KP+ LRR K
Sbjct: 355 NFLLP-DVFNSADDFDSWFDT-------------KNCLGDQKLVERLHAVLKPFLLRRIK 400
Query: 331 EDVQKKKSSNPEARLNEKNPDVDAICEMPSLSRKNDLIIWIRLVPLQEEIYRKFVSLDHI 390
DV+K SL K ++ I++ L +Q E Y K + D I
Sbjct: 401 TDVEK------------------------SLPPKKEIKIYLGLSKMQREWYTKILMKD-I 435
Query: 391 KEL----LMETRSPLAELGVLKKLCDHPRLLSARACCLLNLGTFSAQDGNEGEDSPDVDH 446
L M+ L L L+K C+HP L DG E P
Sbjct: 436 DVLNSSGKMDKMRLLNILMQLRKCCNHPYLF----------------DG--AEPGPPY-- 475
Query: 447 IDQVTDDTLMEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLLKNRHFKTLRI 506
TD+ ++ SGKM+ L LL +L+++G + L+FSQ ++L+I+E R ++ R+
Sbjct: 476 ---TTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532
Query: 507 DGTVTHLLEREKRINLFQQ-NKDYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQ 565
DG H ERE+ I F N +F+L+T+ GG+G+ L +A V+++D WNP D Q
Sbjct: 533 DGQTPHE-EREEAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQ 591
Query: 566 AVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFK---DSLIRQTTGEKKNPFRYFSKQ 622
A+DR +RIGQK+ V V+RLIT TVEE+I R K DS++ Q +K+
Sbjct: 592 AMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKE 651
Query: 623 ELRELFTIEDLQNSVTQLQLQSLHAAQRKSDIKLDEHIAYLQSLGIAGISDHDLMYTCDL 682
E+ ++ ++ + H K DE I + G ++
Sbjct: 652 EMLQM------------IRHGATHVFASKESELTDEDITTILERGEKKTAE--------- 690
Query: 683 SVKEELDVVEESHYIQQRVQKAQFLVEFESQN---------KEFLMEQQRTRNEG----A 729
+ E L + ES R+ Q L +FE ++ E++ +R R A
Sbjct: 691 -MNERLQKMGESSLRNFRMDIEQSLYKFEGEDYREKQKLGMVEWIEPPKRERKANYAVDA 749
Query: 730 WLREPVFPSSTKKKCPKLNKPQPQPS 755
+ RE + S + K PK +P QP+
Sbjct: 750 YFREALRVS--EPKIPKAPRPPKQPN 773
>gi|216548193 RAD54-like protein [Homo sapiens]
Length = 747
Score = 251 bits (640), Expect = 4e-66
Identities = 182/570 (31%), Positives = 294/570 (51%), Gaps = 58/570 (10%)
Query: 92 LHNQLFEHQKEGIAFLYSLYRD----GRKGGILADDMGLGKTVQIIAFLSGMFDASL--- 144
L L HQ+EG+ FL+ G G I+AD+MGLGKT+Q I + + S
Sbjct: 149 LSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPECK 208
Query: 145 --VNHVLLIMPTNLINTWVKEFIKWTPG-MRVKTFHGPSKDERTRNLNRIQQRNGVIITT 201
++ +++ P++L+ W E KW G ++ G SKDE + L + G +++
Sbjct: 209 PEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGSKDEIDQKLEGFMNQRGARVSS 268
Query: 202 YQMLINNWQQLSSFRG--QEFVWDYVILDEAHKIKTSSTKSAICARAIPASNRLLLTGTP 259
+LI +++ G Q+ VI DE H++K S ++ ++ S R+L++GTP
Sbjct: 269 -PILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTP 327
Query: 260 IQNNLQELWSLFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMA 319
IQN+L E +SL F G +LGT FK +E PI + R+ A+ ++ LG + L +
Sbjct: 328 IQNDLLEYFSLVHFVNSG-ILGTAHEFKKHFELPILKGRDAAASEADRQLGEERLRELTS 386
Query: 320 IIKPYFLRRTKEDVQKKKSSNPEARLNEKNPDVDAICEMPSLSRKNDLIIWIRLVPLQEE 379
I+ +RRT + + K L K + ++ RL PLQ E
Sbjct: 387 IVNRCLIRRTSDILSKY------------------------LPVKIEQVVCCRLTPLQTE 422
Query: 380 IYRKFVSLDHIKELLMETR---SPLAELGVLKKLCDHPRLLSARACCLLNLGTFSAQDGN 436
+Y++F+ E L+E + S L+ + LKKLC+HP L+ + +DG
Sbjct: 423 LYKRFLRQAKPAEELLEGKMSVSSLSSITSLKKLCNHPALIYDKCV--------EEEDGF 474
Query: 437 EGE-DSPDVDHIDQVTDDTLMEESGKMIFLMDLLKRLRDEGHQTLVF-SQSRQILNIIER 494
G D + + + L SGKM+ L +L R +V S Q L++ E+
Sbjct: 475 VGALDLFPPGYSSKALEPQL---SGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEK 531
Query: 495 LLKNRHFKTLRIDGTVTHLLEREKRINLFQQ--NKDYSVFLLTTQVGGVGLTLTAATRVV 552
L + R + +R+DGT++ + +R K + F + D+ VF+L+++ GG GL L A R+V
Sbjct: 532 LCRARRYLYVRLDGTMS-IKKRAKVVERFNSPSSPDF-VFMLSSKAGGCGLNLIGANRLV 589
Query: 553 IFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGEK 612
+FDP WNPA D QA+ RV+R GQK+ +YRL++ GT+EEKI++RQ K +L E+
Sbjct: 590 MFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEE 649
Query: 613 KNPFRYFSKQELRELFTIEDLQNSVTQLQL 642
++ R+FS EL+ELF +++ S T +L
Sbjct: 650 QDVERHFSLGELKELFILDEASLSDTHDRL 679
>gi|216548186 RAD54-like protein [Homo sapiens]
Length = 747
Score = 251 bits (640), Expect = 4e-66
Identities = 182/570 (31%), Positives = 294/570 (51%), Gaps = 58/570 (10%)
Query: 92 LHNQLFEHQKEGIAFLYSLYRD----GRKGGILADDMGLGKTVQIIAFLSGMFDASL--- 144
L L HQ+EG+ FL+ G G I+AD+MGLGKT+Q I + + S
Sbjct: 149 LSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPECK 208
Query: 145 --VNHVLLIMPTNLINTWVKEFIKWTPG-MRVKTFHGPSKDERTRNLNRIQQRNGVIITT 201
++ +++ P++L+ W E KW G ++ G SKDE + L + G +++
Sbjct: 209 PEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGSKDEIDQKLEGFMNQRGARVSS 268
Query: 202 YQMLINNWQQLSSFRG--QEFVWDYVILDEAHKIKTSSTKSAICARAIPASNRLLLTGTP 259
+LI +++ G Q+ VI DE H++K S ++ ++ S R+L++GTP
Sbjct: 269 -PILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTP 327
Query: 260 IQNNLQELWSLFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMA 319
IQN+L E +SL F G +LGT FK +E PI + R+ A+ ++ LG + L +
Sbjct: 328 IQNDLLEYFSLVHFVNSG-ILGTAHEFKKHFELPILKGRDAAASEADRQLGEERLRELTS 386
Query: 320 IIKPYFLRRTKEDVQKKKSSNPEARLNEKNPDVDAICEMPSLSRKNDLIIWIRLVPLQEE 379
I+ +RRT + + K L K + ++ RL PLQ E
Sbjct: 387 IVNRCLIRRTSDILSKY------------------------LPVKIEQVVCCRLTPLQTE 422
Query: 380 IYRKFVSLDHIKELLMETR---SPLAELGVLKKLCDHPRLLSARACCLLNLGTFSAQDGN 436
+Y++F+ E L+E + S L+ + LKKLC+HP L+ + +DG
Sbjct: 423 LYKRFLRQAKPAEELLEGKMSVSSLSSITSLKKLCNHPALIYDKCV--------EEEDGF 474
Query: 437 EGE-DSPDVDHIDQVTDDTLMEESGKMIFLMDLLKRLRDEGHQTLVF-SQSRQILNIIER 494
G D + + + L SGKM+ L +L R +V S Q L++ E+
Sbjct: 475 VGALDLFPPGYSSKALEPQL---SGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEK 531
Query: 495 LLKNRHFKTLRIDGTVTHLLEREKRINLFQQ--NKDYSVFLLTTQVGGVGLTLTAATRVV 552
L + R + +R+DGT++ + +R K + F + D+ VF+L+++ GG GL L A R+V
Sbjct: 532 LCRARRYLYVRLDGTMS-IKKRAKVVERFNSPSSPDF-VFMLSSKAGGCGLNLIGANRLV 589
Query: 553 IFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGEK 612
+FDP WNPA D QA+ RV+R GQK+ +YRL++ GT+EEKI++RQ K +L E+
Sbjct: 590 MFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEE 649
Query: 613 KNPFRYFSKQELRELFTIEDLQNSVTQLQL 642
++ R+FS EL+ELF +++ S T +L
Sbjct: 650 QDVERHFSLGELKELFILDEASLSDTHDRL 679
>gi|21071044 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform a [Homo sapiens]
Length = 1054
Score = 249 bits (635), Expect = 2e-65
Identities = 211/697 (30%), Positives = 332/697 (47%), Gaps = 131/697 (18%)
Query: 96 LFEHQKEGIAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLSGMFD-ASLVNHVLLIMPT 154
L ++Q G+ +L SLY +G GILAD+MGLGKT+Q IA L + ++ ++++P
Sbjct: 183 LRDYQIRGLNWLISLYENG-VNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPK 241
Query: 155 NLINTWVKEFIKWTPGMRVKTFHGPSKDERTRNLNRIQQRNG---VIITTYQMLINNWQQ 211
+ ++ W+ EF +W P +RV F G KD R + R + G V +T+Y+M+I ++
Sbjct: 242 STLHNWMNEFKRWVPSLRVICFVG-DKDARAAFI-RDEMMPGEWDVCVTSYEMVI---KE 296
Query: 212 LSSFRGQEFVWDYVILDEAHKIKTSSTKSAICARAIPASNRLLLTGTPIQNNLQELWSLF 271
S F+ +F W Y+++DEAH+IK +K + R ++NRLLLTGTP+QNNL ELW+L
Sbjct: 297 KSVFK--KFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALL 354
Query: 272 DFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGF-KISENLMAIIKPYFLRRTK 330
+F + + F ++ + LG K+ E L A++KP+ LRR K
Sbjct: 355 NFLLP-DVFNSADDFDSWFDT-------------KNCLGDQKLVERLHAVLKPFLLRRIK 400
Query: 331 EDVQKKKSSNPEARLNEKNPDVDAICEMPSLSRKNDLIIWIRLVPLQEEIYRKFVSLDHI 390
DV+K SL K ++ I++ L +Q E Y K + D I
Sbjct: 401 TDVEK------------------------SLPPKKEIKIYLGLSKMQREWYTKILMKD-I 435
Query: 391 KEL----LMETRSPLAELGVLKKLCDHPRLLSARACCLLNLGTFSAQDGNEGEDSPDVDH 446
L M+ L L L+K C+HP L DG E P
Sbjct: 436 DVLNSSGKMDKMRLLNILMQLRKCCNHPYLF----------------DG--AEPGPPY-- 475
Query: 447 IDQVTDDTLMEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLLKNRHFKTLRI 506
TD+ ++ SGKM+ L LL +L+++G + L+FSQ ++L+I+E R ++ R+
Sbjct: 476 ---TTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRL 532
Query: 507 DGTVTH-----------LLEREKRINLFQQ-NKDYSVFLLTTQVGGVGLTLTAATRVVIF 554
DG H L + + I F N +F+L+T+ GG+G+ L +A V+++
Sbjct: 533 DGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILY 592
Query: 555 DPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFK---DSLIRQTTGE 611
D WNP D QA+DR +RIGQK+ V V+RLIT TVEE+I R K DS++ Q
Sbjct: 593 DSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRL 652
Query: 612 KKNPFRYFSKQELRELFTIEDLQNSVTQLQLQSLHAAQRKSDIKLDEHIAYLQSLGIAGI 671
+K+E+ ++ ++ + H K DE I + G
Sbjct: 653 IDQQSNKLAKEEMLQM------------IRHGATHVFASKESELTDEDITTILERGEKKT 700
Query: 672 SDHDLMYTCDLSVKEELDVVEESHYIQQRVQKAQFLVEFESQN---------KEFLMEQQ 722
++ + E L + ES R+ Q L +FE ++ E++ +
Sbjct: 701 AE----------MNERLQKMGESSLRNFRMDIEQSLYKFEGEDYREKQKLGMVEWIEPPK 750
Query: 723 RTRNEG----AWLREPVFPSSTKKKCPKLNKPQPQPS 755
R R A+ RE + S + K PK +P QP+
Sbjct: 751 RERKANYAVDAYFREALRVS--EPKIPKAPRPPKQPN 785
>gi|58219008 RAD26L hypothetical protein [Homo sapiens]
Length = 712
Score = 243 bits (620), Expect = 8e-64
Identities = 201/674 (29%), Positives = 308/674 (45%), Gaps = 120/674 (17%)
Query: 22 LRYVKEAKEATKNGDLEEAFKLFNLAKDIFPNEKVLSRIQKIQEALEELAEQGDDEFTDV 81
L+ VK K+ +N ++ +L K FPN K S +L++ GD
Sbjct: 80 LQEVKFVKDCPRNLIFDDE----DLEKPYFPNRKFPS-----SSVAFKLSDNGDS----- 125
Query: 82 CNSGLLLYRELHNQLFEHQKEGIAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLSGM-- 139
+ ++ L ++Q+EG FLY Y G G IL DDMGLGKTVQ+I+FL+ +
Sbjct: 126 ------IPYTINRYLRDYQREGTRFLYGHYIHGG-GCILGDDMGLGKTVQVISFLAAVLH 178
Query: 140 ------------------------FDASLVNHVLLIMPTNLINTWVKEFIKWTPGMRVKT 175
++ L++ P +++ W E W RV
Sbjct: 179 KKGTREDIENNMPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTW-GYFRVTV 237
Query: 176 FHGPSKDERTRNLNRIQQRN-GVIITTYQMLINNWQQLSSFRGQEFVWDYVILDEAHKIK 234
HG KD L R++QR + +TTY+ L +L+S W VI+DEAH+IK
Sbjct: 238 LHGNRKD---NELIRVKQRKCEIALTTYETLRLCLDELNSLE-----WSAVIVDEAHRIK 289
Query: 235 TSSTKSAICARAIPASNRLLLTGTPIQNNLQELWSLFDFACQGSLLGTLKTFKMEYENPI 294
+ +A+ + R+ LTGT +QNN++ELW + D+A G LLG+ FK ++ +P+
Sbjct: 290 NPKARVTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPG-LLGSGTYFKKQFSDPV 348
Query: 295 TRAREKDATPGEKALGFKISENLMAIIKPYFLRRTKEDVQKKKSSNPEARLNEKNPDVDA 354
+ AT E A G K + L + +FLRRTK ++ +
Sbjct: 349 EHGQRHTATKRELATGRKAMQRLAKKMSGWFLRRTKTLIKDQ------------------ 390
Query: 355 ICEMPSLSRKNDLIIWIRLVPLQEEIYRKFVSLDHIKELLMETRSP-------------- 400
L +K D +++ L Q+ +Y+ + + + L++++ P
Sbjct: 391 ------LPKKEDRMVYCSLTDFQKAVYQTVLETEDV-TLILQSSEPCTCRSGQKRRNCCY 443
Query: 401 -------------LAELGVLKKLCDHPRLLSARACCLLNLGTFSAQDGNEGEDSPD-VDH 446
L+ L VL+K+ +H LL A + PD V
Sbjct: 444 KTNSHGETVKTLYLSYLTVLQKVANHVALLQAASTSKQQETLIKRICDQVFSRFPDFVQK 503
Query: 447 IDQVTDDTLMEE--SGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLLKNRHFKTL 504
+TL + SGKM L LL R + L+FS S ++L+++++
Sbjct: 504 SKDAAFETLSDPKYSGKMKVLQQLLNHCRKNRDKVLLFSFSTKLLDVLQQYCMASGLDYR 563
Query: 505 RIDGTVTHLLEREKRINLFQQNKDYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDA 564
R+DG+ T ER K + F +D ++ L++T GG+GL A VV+FDP+WNPA D
Sbjct: 564 RLDGS-TKSEERLKIVKEFNSTQDVNICLVSTMAGGLGLNFVGANVVVLFDPTWNPANDL 622
Query: 565 QAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGEKKNPFRYF----- 619
QA+DR YRIGQ +V V RLI+ GTVEE +Y RQ++K L G +N RYF
Sbjct: 623 QAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQIYKQQLHCVVVG-SENAKRYFEAVQG 681
Query: 620 SKQELRELFTIEDL 633
SK+ ELF I +L
Sbjct: 682 SKEHQGELFGIHNL 695
>gi|21071058 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a5 [Homo sapiens]
Length = 1052
Score = 242 bits (618), Expect = 1e-63
Identities = 204/687 (29%), Positives = 331/687 (48%), Gaps = 121/687 (17%)
Query: 95 QLFEHQKEGIAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLSGMFD-ASLVNHVLLIMP 153
+L ++Q G+ +L SLY +G G ILAD+MGLGKT+Q I+ L M ++ ++++P
Sbjct: 179 KLRDYQVRGLNWLISLYENGING-ILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVP 237
Query: 154 TNLINTWVKEFIKWTPGMRVKTFHGPSKDERTRNLNRIQQRN--GVIITTYQMLINNWQQ 211
+ ++ W+ EF +W P +R G K++R + + V +T+Y+MLI ++
Sbjct: 238 KSTLHNWMSEFKRWVPTLRSVCLIG-DKEQRAAFVRDVLLPGEWDVCVTSYEMLI---KE 293
Query: 212 LSSFRGQEFVWDYVILDEAHKIKTSSTKSAICARAIPASNRLLLTGTPIQNNLQELWSLF 271
S F+ +F W Y+++DEAH+IK +K + R +NRLLLTGTP+QNNL ELWSL
Sbjct: 294 KSVFK--KFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLL 351
Query: 272 DFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGF-KISENLMAIIKPYFLRRTK 330
+F + + F ++ LG K+ E L +++P+ LRR K
Sbjct: 352 NFLLP-DVFNSADDFDSWFDT-------------NNCLGDQKLVERLHMVLRPFLLRRIK 397
Query: 331 EDVQKKKSSNPEARLNEKNPDVDAICEMPSLSRKNDLIIWIRLVPLQEEIYRKFVSLDHI 390
DV+K SL K ++ I++ L +Q E Y + + D
Sbjct: 398 ADVEK------------------------SLPPKKEVKIYVGLSKMQREWYTRILMKDI- 432
Query: 391 KELL-----METRSPLAELGVLKKLCDHPRLLSARACCLLNLGTFSAQDGNEGEDSPDVD 445
++L M+ L L L+K C+HP L DG E P
Sbjct: 433 -DILNSAGKMDKMRLLNILMQLRKCCNHPYLF----------------DG--AEPGPPY- 472
Query: 446 HIDQVTDDTLMEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLLKNRHFKTLR 505
TD L+ SGKM+ L LL +L+++G + L+FSQ ++L+I+E R+++ R
Sbjct: 473 ----TTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCR 528
Query: 506 IDGTVTHLLEREKRINLFQQ-NKDYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDA 564
+DG H ER+ IN + + N VF+L+T+ GG+G+ L A V+++D WNP D
Sbjct: 529 LDGQTPHD-ERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDL 587
Query: 565 QAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFK---DSLIRQTTGEKKNPFRYFSK 621
QA+DR +RIGQ + V V+R IT TVEE+I R K DS++ Q K
Sbjct: 588 QAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGK 647
Query: 622 QELRELFTIEDLQNSVTQLQLQSLHAAQRKSDIKLDEHIAYLQSLGIAGISDHDLMYTCD 681
E+ ++ +++ T + A ++S+I ++ I GI + T +
Sbjct: 648 DEMLQM-----IRHGATHV------FASKESEITDED---------IDGILERGAKKTAE 687
Query: 682 LSVKEELDVVEESHYIQQRVQKAQFLVEFESQN---------KEFLMEQQRTRNEG---- 728
++ E+L + ES + + FE ++ E++ +R R
Sbjct: 688 MN--EKLSKMGESSLRNFTMDTESSVYNFEGEDYREKQKIAFTEWIEPPKRERKANYAVD 745
Query: 729 AWLREPVFPSSTKKKCPKLNKPQPQPS 755
A+ RE + S + K PK +P QP+
Sbjct: 746 AYFREALRVS--EPKAPKAPRPPKQPN 770
>gi|21914927 helicase, lymphoid-specific [Homo sapiens]
Length = 838
Score = 229 bits (584), Expect = 1e-59
Identities = 180/602 (29%), Positives = 282/602 (46%), Gaps = 106/602 (17%)
Query: 99 HQKEGIAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLSGMFDASLVNHVLLIMPTNLIN 158
+Q EG+ +L L+ +G G ILAD+MGLGKTVQ IA ++ M + L+ P + +
Sbjct: 226 YQVEGMEWLRMLWENGING-ILADEMGLGKTVQCIATIALMIQRGVPGPFLVCGPLSTLP 284
Query: 159 TWVKEFIKWTPGMRVKTFHGPSKDERTRNLNRIQQRNG------VIITTYQMLINNWQQL 212
W+ EF ++TP + +HG +++ER + + I +R G V+IT++++ + + L
Sbjct: 285 NWMAEFKRFTPDIPTMLYHG-TQEERQKLVRNIYKRKGTLQIHPVVITSFEIAMRDRNAL 343
Query: 213 SSFRGQEFVWDYVILDEAHKIKTSSTKSAICARAIPASNRLLLTGTPIQNNLQELWSLFD 272
Q W Y+I+DE H+IK + + A N+LLLTGTP+QNNL ELWSL +
Sbjct: 344 -----QHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLN 398
Query: 273 FACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAIIKPYFLRRTKED 332
F + LK+F+ ++ +D E+ + L I+ P+ LRR K D
Sbjct: 399 FLLP-DVFDDLKSFESWFDITSLSETAEDIIAKEREQN--VLHMLHQILTPFLLRRLKSD 455
Query: 333 VQKKKSSNPE----ARLNEKNPDV------DAICEMPSLSRKNDLIIWIRLVPLQEEIYR 382
V + E A L++K I M S K I L P R
Sbjct: 456 VALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEKET----IELSPTGRPKRR 511
Query: 383 KFVSLDHIK----------------------ELLMETRSPLAE---------LGVLKKLC 411
S+++ K ++E P+ + +L+K C
Sbjct: 512 TRKSINYSKIDDFPNELEKLISQIQPEVDRERAVVEVNIPVESEVNLKLQNIMMLLRKCC 571
Query: 412 DHPRLLSARACCLLNLGTFSAQDGNEGEDSPDVDHIDQVT-----DDTLMEESGKMIFLM 466
+HP L+ ID VT D+ L+ SGK + L
Sbjct: 572 NHPYLIEYP--------------------------IDPVTQEFKIDEELVTNSGKFLILD 605
Query: 467 DLLKRLRDEGHQTLVFSQSRQILNIIERLLKNRHFKTLRIDGTVTHLLEREKRINLFQQN 526
+L L+ GH+ L+FSQ +L+I+ R F R+DG++++ EREK ++ F +
Sbjct: 606 RMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYS-EREKNMHSFNTD 664
Query: 527 KDYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLIT 586
+ +FL++T+ GG+G+ LTAA V+I+D WNP +D QA DR +RIGQ + VVVYRL+T
Sbjct: 665 PEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVT 724
Query: 587 CGTVEEKIYRRQVFKDSLIRQTTGEKKNPFR-----------YFSKQELRELFTIEDLQN 635
T+++KI R K L + KN F+ + +EL EL D +
Sbjct: 725 ANTIDQKIVERAAAKRKLEKLII--HKNHFKGGQSGLNLSKNFLDPKELMELLKSRDYER 782
Query: 636 SV 637
+
Sbjct: 783 EI 784
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 227 bits (578), Expect = 6e-59
Identities = 196/677 (28%), Positives = 327/677 (48%), Gaps = 109/677 (16%)
Query: 95 QLFEHQKEGIAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLSGMFDA-SLVNHVLLIMP 153
+L ++Q EG+ +L + ILAD+MGLGKT+Q I+FLS +F L L+++P
Sbjct: 483 ELRDYQLEGLNWLAHSWCKNNSV-ILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVP 541
Query: 154 TNLINTWVKEFIKWTPGMRVKTFHGPSKDERT-RNLNRIQQRN-----GVIITTYQMLIN 207
+ + +W +EF W P + V + G T R I + +ITTY++L+
Sbjct: 542 LSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLK 601
Query: 208 NWQQLSSFRGQEFVWDYVILDEAHKIKTSSTKSAICARAIPASNRLLLTGTPIQNNLQEL 267
+ L S W ++ +DEAH++K + +++RLL+TGTP+QN+L+EL
Sbjct: 602 DKTVLGSIN-----WAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKEL 656
Query: 268 WSLFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAIIKPYFLR 327
WSL F ++ F ++E + RE G+ ++L +++P+ LR
Sbjct: 657 WSLLHF-----IMPEKFEFWEDFEEDHGKGREN---------GY---QSLHKVLEPFLLR 699
Query: 328 RTKEDVQKKKSSNPEARLNEKNPDVDAICEMPSLSRKNDLIIWIRLVPLQEEIYRKFVSL 387
R K+DV+K SL K + I+ + + LQ++ Y K++
Sbjct: 700 RVKKDVEK------------------------SLPAKVEQILRVEMSALQKQYY-KWILT 734
Query: 388 DHIKELLMETRSP----LAELGVLKKLCDHPRLLSARACCLLNLGTFSAQDGNEGEDSPD 443
+ K L TR L + LKK C+H C L+ + NE E+ +
Sbjct: 735 RNYKALAKGTRGSTSGFLNIVMELKKCCNH--------CYLIK-----PPEENERENGQE 781
Query: 444 VDHIDQVTDDTLMEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLLKNRHFKT 503
+ +L+ SGK+I L LL RLR+ G++ L+FSQ ++L+I+ L +H+
Sbjct: 782 ILL-------SLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPF 834
Query: 504 LRIDGTVTHLLEREKRINLFQQNKDYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATD 563
R+DG++ + ++ + + FLL+T+ GG+G+ L +A VVIFD WNP D
Sbjct: 835 QRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQND 894
Query: 564 AQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRR---QVFKDSLIRQ---TTG------- 610
QA R +RIGQK+ V +YRL+T GTVEE+I R ++ D L+ Q TTG
Sbjct: 895 LQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRTILENN 954
Query: 611 ---EKKNPFRYFSKQELREL--FTIEDLQNSVTQLQLQSLHAAQRKSDIKLDEHIAYLQS 665
NP F+K+EL + F EDL +L+ + ++ DI +A +
Sbjct: 955 SGRSNSNP---FNKEELTAILKFGAEDLFK-----ELEGEESEPQEMDIDEILRLAETRE 1006
Query: 666 LGIAGISDHDLMYTCDLSVKEELDVVEESHYIQQRVQKAQFLVEFESQNKEFLMEQQRTR 725
++ + +L+ ++ +E+ +++R K + E Q K+ E+++
Sbjct: 1007 NEVSTSATDELLSQFKVA---NFATMEDEEELEERPHKDWDEIIPEEQRKKVEEEERQKE 1063
Query: 726 NEGAWLREPVFPSSTKK 742
E ++ P SSTKK
Sbjct: 1064 LEEIYML-PRIRSSTKK 1079
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 224 bits (570), Expect = 5e-58
Identities = 168/513 (32%), Positives = 255/513 (49%), Gaps = 52/513 (10%)
Query: 96 LFEHQKEGIAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLSGMFDASLVNH-VLLIMPT 154
L ++Q +G+ +L SLY + G ILAD+MGLGKT+Q IA ++ + + +N L+I+P
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLNG-ILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPL 812
Query: 155 NLINTWVKEFIKWTPGMRVKTFHGPSKDERTRNLNRIQQRNGVIITTYQMLINNWQQLSS 214
+ ++ W EF KW P + ++ G R + V++TTY+ +I + L+
Sbjct: 813 STLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAK 872
Query: 215 FRGQEFVWDYVILDEAHKIKTSSTK-SAICARAIPASNRLLLTGTPIQNNLQELWSLFDF 273
R W Y+I+DE H++K K + + A RLLLTGTP+QN L ELW+L +F
Sbjct: 873 IR-----WKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNF 927
Query: 274 ACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAIIKPYFLRRTKEDV 333
++ + TF+ + P EK E+ + I L +++P+ LRR K++V
Sbjct: 928 LLP-TIFKSCSTFEQWFNAPFAMTGEKVDLNEEETI--LIIRRLHKVLRPFLLRRLKKEV 984
Query: 334 QKKKSSNPEARLNEKNPDVDAICEMPSLSRKNDLIIWIRLVPLQEEIYRKFVSLDHIKEL 393
EA+L EK V C+M +L R L + K V L E
Sbjct: 985 --------EAQLPEKVEYVIK-CDMSALQRV-----------LYRHMQAKGVLLTDGSEK 1024
Query: 394 LME----TRSPLAELGVLKKLCDHPRLLSARACCLLNLGTFSAQDGNEGEDSPDVDHIDQ 449
+ T++ + + L+K+C+HP + +FS G G +D
Sbjct: 1025 DKKGKGGTKTLMNTIMQLRKICNHPYMFQHIE------ESFSEHLGFTGGIVQGLD---- 1074
Query: 450 VTDDTLMEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLLKNRHFKTLRIDGT 509
L SGK L +L +LR H+ L+F Q ++ I+E R FK LR+DGT
Sbjct: 1075 -----LYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGT 1129
Query: 510 VTHLLEREKRINLFQQ-NKDYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVD 568
T +R + F + +Y +FLL+T+ GG+GL L +A V+IFD WNP D QA D
Sbjct: 1130 -TKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQD 1188
Query: 569 RVYRIGQKENVVVYRLITCGTVEEKIYRRQVFK 601
R +RIGQ+ V V RL T +VEEKI +K
Sbjct: 1189 RAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1221
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 224 bits (570), Expect = 5e-58
Identities = 168/513 (32%), Positives = 255/513 (49%), Gaps = 52/513 (10%)
Query: 96 LFEHQKEGIAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLSGMFDASLVNH-VLLIMPT 154
L ++Q +G+ +L SLY + G ILAD+MGLGKT+Q IA ++ + + +N L+I+P
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLNG-ILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPL 812
Query: 155 NLINTWVKEFIKWTPGMRVKTFHGPSKDERTRNLNRIQQRNGVIITTYQMLINNWQQLSS 214
+ ++ W EF KW P + ++ G R + V++TTY+ +I + L+
Sbjct: 813 STLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAK 872
Query: 215 FRGQEFVWDYVILDEAHKIKTSSTK-SAICARAIPASNRLLLTGTPIQNNLQELWSLFDF 273
R W Y+I+DE H++K K + + A RLLLTGTP+QN L ELW+L +F
Sbjct: 873 IR-----WKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNF 927
Query: 274 ACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAIIKPYFLRRTKEDV 333
++ + TF+ + P EK E+ + I L +++P+ LRR K++V
Sbjct: 928 LLP-TIFKSCSTFEQWFNAPFAMTGEKVDLNEEETI--LIIRRLHKVLRPFLLRRLKKEV 984
Query: 334 QKKKSSNPEARLNEKNPDVDAICEMPSLSRKNDLIIWIRLVPLQEEIYRKFVSLDHIKEL 393
EA+L EK V C+M +L R L + K V L E
Sbjct: 985 --------EAQLPEKVEYVIK-CDMSALQRV-----------LYRHMQAKGVLLTDGSEK 1024
Query: 394 LME----TRSPLAELGVLKKLCDHPRLLSARACCLLNLGTFSAQDGNEGEDSPDVDHIDQ 449
+ T++ + + L+K+C+HP + +FS G G +D
Sbjct: 1025 DKKGKGGTKTLMNTIMQLRKICNHPYMFQHIE------ESFSEHLGFTGGIVQGLD---- 1074
Query: 450 VTDDTLMEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLLKNRHFKTLRIDGT 509
L SGK L +L +LR H+ L+F Q ++ I+E R FK LR+DGT
Sbjct: 1075 -----LYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGT 1129
Query: 510 VTHLLEREKRINLFQQ-NKDYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVD 568
T +R + F + +Y +FLL+T+ GG+GL L +A V+IFD WNP D QA D
Sbjct: 1130 -TKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQD 1188
Query: 569 RVYRIGQKENVVVYRLITCGTVEEKIYRRQVFK 601
R +RIGQ+ V V RL T +VEEKI +K
Sbjct: 1189 RAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1221
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 224 bits (570), Expect = 5e-58
Identities = 168/513 (32%), Positives = 255/513 (49%), Gaps = 52/513 (10%)
Query: 96 LFEHQKEGIAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLSGMFDASLVNH-VLLIMPT 154
L ++Q +G+ +L SLY + G ILAD+MGLGKT+Q IA ++ + + +N L+I+P
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLNG-ILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPL 812
Query: 155 NLINTWVKEFIKWTPGMRVKTFHGPSKDERTRNLNRIQQRNGVIITTYQMLINNWQQLSS 214
+ ++ W EF KW P + ++ G R + V++TTY+ +I + L+
Sbjct: 813 STLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAK 872
Query: 215 FRGQEFVWDYVILDEAHKIKTSSTK-SAICARAIPASNRLLLTGTPIQNNLQELWSLFDF 273
R W Y+I+DE H++K K + + A RLLLTGTP+QN L ELW+L +F
Sbjct: 873 IR-----WKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNF 927
Query: 274 ACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAIIKPYFLRRTKEDV 333
++ + TF+ + P EK E+ + I L +++P+ LRR K++V
Sbjct: 928 LLP-TIFKSCSTFEQWFNAPFAMTGEKVDLNEEETI--LIIRRLHKVLRPFLLRRLKKEV 984
Query: 334 QKKKSSNPEARLNEKNPDVDAICEMPSLSRKNDLIIWIRLVPLQEEIYRKFVSLDHIKEL 393
EA+L EK V C+M +L R L + K V L E
Sbjct: 985 --------EAQLPEKVEYVIK-CDMSALQRV-----------LYRHMQAKGVLLTDGSEK 1024
Query: 394 LME----TRSPLAELGVLKKLCDHPRLLSARACCLLNLGTFSAQDGNEGEDSPDVDHIDQ 449
+ T++ + + L+K+C+HP + +FS G G +D
Sbjct: 1025 DKKGKGGTKTLMNTIMQLRKICNHPYMFQHIE------ESFSEHLGFTGGIVQGLD---- 1074
Query: 450 VTDDTLMEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLLKNRHFKTLRIDGT 509
L SGK L +L +LR H+ L+F Q ++ I+E R FK LR+DGT
Sbjct: 1075 -----LYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGT 1129
Query: 510 VTHLLEREKRINLFQQ-NKDYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVD 568
T +R + F + +Y +FLL+T+ GG+GL L +A V+IFD WNP D QA D
Sbjct: 1130 -TKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQD 1188
Query: 569 RVYRIGQKENVVVYRLITCGTVEEKIYRRQVFK 601
R +RIGQ+ V V RL T +VEEKI +K
Sbjct: 1189 RAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1221
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 224 bits (570), Expect = 5e-58
Identities = 168/513 (32%), Positives = 255/513 (49%), Gaps = 52/513 (10%)
Query: 96 LFEHQKEGIAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLSGMFDASLVNH-VLLIMPT 154
L ++Q +G+ +L SLY + G ILAD+MGLGKT+Q IA ++ + + +N L+I+P
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLNG-ILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPL 812
Query: 155 NLINTWVKEFIKWTPGMRVKTFHGPSKDERTRNLNRIQQRNGVIITTYQMLINNWQQLSS 214
+ ++ W EF KW P + ++ G R + V++TTY+ +I + L+
Sbjct: 813 STLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAK 872
Query: 215 FRGQEFVWDYVILDEAHKIKTSSTK-SAICARAIPASNRLLLTGTPIQNNLQELWSLFDF 273
R W Y+I+DE H++K K + + A RLLLTGTP+QN L ELW+L +F
Sbjct: 873 IR-----WKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNF 927
Query: 274 ACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAIIKPYFLRRTKEDV 333
++ + TF+ + P EK E+ + I L +++P+ LRR K++V
Sbjct: 928 LLP-TIFKSCSTFEQWFNAPFAMTGEKVDLNEEETI--LIIRRLHKVLRPFLLRRLKKEV 984
Query: 334 QKKKSSNPEARLNEKNPDVDAICEMPSLSRKNDLIIWIRLVPLQEEIYRKFVSLDHIKEL 393
EA+L EK V C+M +L R L + K V L E
Sbjct: 985 --------EAQLPEKVEYVIK-CDMSALQRV-----------LYRHMQAKGVLLTDGSEK 1024
Query: 394 LME----TRSPLAELGVLKKLCDHPRLLSARACCLLNLGTFSAQDGNEGEDSPDVDHIDQ 449
+ T++ + + L+K+C+HP + +FS G G +D
Sbjct: 1025 DKKGKGGTKTLMNTIMQLRKICNHPYMFQHIE------ESFSEHLGFTGGIVQGLD---- 1074
Query: 450 VTDDTLMEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLLKNRHFKTLRIDGT 509
L SGK L +L +LR H+ L+F Q ++ I+E R FK LR+DGT
Sbjct: 1075 -----LYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGT 1129
Query: 510 VTHLLEREKRINLFQQ-NKDYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVD 568
T +R + F + +Y +FLL+T+ GG+GL L +A V+IFD WNP D QA D
Sbjct: 1130 -TKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQD 1188
Query: 569 RVYRIGQKENVVVYRLITCGTVEEKIYRRQVFK 601
R +RIGQ+ V V RL T +VEEKI +K
Sbjct: 1189 RAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1221
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 224 bits (570), Expect = 5e-58
Identities = 168/513 (32%), Positives = 255/513 (49%), Gaps = 52/513 (10%)
Query: 96 LFEHQKEGIAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLSGMFDASLVNH-VLLIMPT 154
L ++Q +G+ +L SLY + G ILAD+MGLGKT+Q IA ++ + + +N L+I+P
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLNG-ILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPL 812
Query: 155 NLINTWVKEFIKWTPGMRVKTFHGPSKDERTRNLNRIQQRNGVIITTYQMLINNWQQLSS 214
+ ++ W EF KW P + ++ G R + V++TTY+ +I + L+
Sbjct: 813 STLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAK 872
Query: 215 FRGQEFVWDYVILDEAHKIKTSSTK-SAICARAIPASNRLLLTGTPIQNNLQELWSLFDF 273
R W Y+I+DE H++K K + + A RLLLTGTP+QN L ELW+L +F
Sbjct: 873 IR-----WKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNF 927
Query: 274 ACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAIIKPYFLRRTKEDV 333
++ + TF+ + P EK E+ + I L +++P+ LRR K++V
Sbjct: 928 LLP-TIFKSCSTFEQWFNAPFAMTGEKVDLNEEETI--LIIRRLHKVLRPFLLRRLKKEV 984
Query: 334 QKKKSSNPEARLNEKNPDVDAICEMPSLSRKNDLIIWIRLVPLQEEIYRKFVSLDHIKEL 393
EA+L EK V C+M +L R L + K V L E
Sbjct: 985 --------EAQLPEKVEYVIK-CDMSALQRV-----------LYRHMQAKGVLLTDGSEK 1024
Query: 394 LME----TRSPLAELGVLKKLCDHPRLLSARACCLLNLGTFSAQDGNEGEDSPDVDHIDQ 449
+ T++ + + L+K+C+HP + +FS G G +D
Sbjct: 1025 DKKGKGGTKTLMNTIMQLRKICNHPYMFQHIE------ESFSEHLGFTGGIVQGLD---- 1074
Query: 450 VTDDTLMEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLLKNRHFKTLRIDGT 509
L SGK L +L +LR H+ L+F Q ++ I+E R FK LR+DGT
Sbjct: 1075 -----LYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGT 1129
Query: 510 VTHLLEREKRINLFQQ-NKDYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVD 568
T +R + F + +Y +FLL+T+ GG+GL L +A V+IFD WNP D QA D
Sbjct: 1130 -TKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQD 1188
Query: 569 RVYRIGQKENVVVYRLITCGTVEEKIYRRQVFK 601
R +RIGQ+ V V RL T +VEEKI +K
Sbjct: 1189 RAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1221
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 224 bits (570), Expect = 5e-58
Identities = 168/513 (32%), Positives = 255/513 (49%), Gaps = 52/513 (10%)
Query: 96 LFEHQKEGIAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLSGMFDASLVNH-VLLIMPT 154
L ++Q +G+ +L SLY + G ILAD+MGLGKT+Q IA ++ + + +N L+I+P
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLNG-ILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPL 812
Query: 155 NLINTWVKEFIKWTPGMRVKTFHGPSKDERTRNLNRIQQRNGVIITTYQMLINNWQQLSS 214
+ ++ W EF KW P + ++ G R + V++TTY+ +I + L+
Sbjct: 813 STLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAK 872
Query: 215 FRGQEFVWDYVILDEAHKIKTSSTK-SAICARAIPASNRLLLTGTPIQNNLQELWSLFDF 273
R W Y+I+DE H++K K + + A RLLLTGTP+QN L ELW+L +F
Sbjct: 873 IR-----WKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNF 927
Query: 274 ACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAIIKPYFLRRTKEDV 333
++ + TF+ + P EK E+ + I L +++P+ LRR K++V
Sbjct: 928 LLP-TIFKSCSTFEQWFNAPFAMTGEKVDLNEEETI--LIIRRLHKVLRPFLLRRLKKEV 984
Query: 334 QKKKSSNPEARLNEKNPDVDAICEMPSLSRKNDLIIWIRLVPLQEEIYRKFVSLDHIKEL 393
EA+L EK V C+M +L R L + K V L E
Sbjct: 985 --------EAQLPEKVEYVIK-CDMSALQRV-----------LYRHMQAKGVLLTDGSEK 1024
Query: 394 LME----TRSPLAELGVLKKLCDHPRLLSARACCLLNLGTFSAQDGNEGEDSPDVDHIDQ 449
+ T++ + + L+K+C+HP + +FS G G +D
Sbjct: 1025 DKKGKGGTKTLMNTIMQLRKICNHPYMFQHIE------ESFSEHLGFTGGIVQGLD---- 1074
Query: 450 VTDDTLMEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLLKNRHFKTLRIDGT 509
L SGK L +L +LR H+ L+F Q ++ I+E R FK LR+DGT
Sbjct: 1075 -----LYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGT 1129
Query: 510 VTHLLEREKRINLFQQ-NKDYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVD 568
T +R + F + +Y +FLL+T+ GG+GL L +A V+IFD WNP D QA D
Sbjct: 1130 -TKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQD 1188
Query: 569 RVYRIGQKENVVVYRLITCGTVEEKIYRRQVFK 601
R +RIGQ+ V V RL T +VEEKI +K
Sbjct: 1189 RAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1221
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 224 bits (570), Expect = 5e-58
Identities = 168/513 (32%), Positives = 255/513 (49%), Gaps = 52/513 (10%)
Query: 96 LFEHQKEGIAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLSGMFDASLVNH-VLLIMPT 154
L ++Q +G+ +L SLY + G ILAD+MGLGKT+Q IA ++ + + +N L+I+P
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLNG-ILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPL 812
Query: 155 NLINTWVKEFIKWTPGMRVKTFHGPSKDERTRNLNRIQQRNGVIITTYQMLINNWQQLSS 214
+ ++ W EF KW P + ++ G R + V++TTY+ +I + L+
Sbjct: 813 STLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAK 872
Query: 215 FRGQEFVWDYVILDEAHKIKTSSTK-SAICARAIPASNRLLLTGTPIQNNLQELWSLFDF 273
R W Y+I+DE H++K K + + A RLLLTGTP+QN L ELW+L +F
Sbjct: 873 IR-----WKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNF 927
Query: 274 ACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAIIKPYFLRRTKEDV 333
++ + TF+ + P EK E+ + I L +++P+ LRR K++V
Sbjct: 928 LLP-TIFKSCSTFEQWFNAPFAMTGEKVDLNEEETI--LIIRRLHKVLRPFLLRRLKKEV 984
Query: 334 QKKKSSNPEARLNEKNPDVDAICEMPSLSRKNDLIIWIRLVPLQEEIYRKFVSLDHIKEL 393
EA+L EK V C+M +L R L + K V L E
Sbjct: 985 --------EAQLPEKVEYVIK-CDMSALQRV-----------LYRHMQAKGVLLTDGSEK 1024
Query: 394 LME----TRSPLAELGVLKKLCDHPRLLSARACCLLNLGTFSAQDGNEGEDSPDVDHIDQ 449
+ T++ + + L+K+C+HP + +FS G G +D
Sbjct: 1025 DKKGKGGTKTLMNTIMQLRKICNHPYMFQHIE------ESFSEHLGFTGGIVQGLD---- 1074
Query: 450 VTDDTLMEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLLKNRHFKTLRIDGT 509
L SGK L +L +LR H+ L+F Q ++ I+E R FK LR+DGT
Sbjct: 1075 -----LYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGT 1129
Query: 510 VTHLLEREKRINLFQQ-NKDYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVD 568
T +R + F + +Y +FLL+T+ GG+GL L +A V+IFD WNP D QA D
Sbjct: 1130 -TKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQD 1188
Query: 569 RVYRIGQKENVVVYRLITCGTVEEKIYRRQVFK 601
R +RIGQ+ V V RL T +VEEKI +K
Sbjct: 1189 RAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1221
>gi|114326455 chromodomain helicase DNA binding protein 8 [Homo
sapiens]
Length = 2302
Score = 222 bits (565), Expect = 2e-57
Identities = 170/558 (30%), Positives = 276/558 (49%), Gaps = 84/558 (15%)
Query: 94 NQLFEHQKEGIAFL-YSLYRDGRKGGILADDMGLGKTVQIIAFLSGMFDASLVNHVLLIM 152
NQL E+Q EG+ +L ++ Y R+ ILAD+MGLGKT+Q IAFL +++ + L+I
Sbjct: 530 NQLREYQLEGVNWLLFNWYN--RQNCILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIA 587
Query: 153 PTNLINTWVKEFIKWTPGMRVKTFHGP-------------SKDERTRNLNRIQQRNGVII 199
P + I W +EF WT M +HG KD R R + + + +I
Sbjct: 588 PLSTITNWEREFNTWTE-MNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDA-LI 645
Query: 200 TTYQMLINNWQQLSSFRGQEFVWDYVILDEAHKIKTSSTKSAICARAIPASNRLLLTGTP 259
TT++M++++ +L +E W VI+DEAH++K + K + + +++LLTGTP
Sbjct: 646 TTFEMILSDCPEL-----REIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTP 700
Query: 260 IQNNLQELWSLFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMA 319
+QN ++EL+SL F + S + F ++ + T + + L A
Sbjct: 701 LQNTVEELFSLLHFL-EPSQFPSESEFLKDFGDLKTEEQV---------------QKLQA 744
Query: 320 IIKPYFLRRTKEDVQKKKSSNPEARLNEKNPDVDAICEMPSLSRKNDLIIWIRLVPLQEE 379
I+KP LRR KEDV+K +L+ K + II + L +Q++
Sbjct: 745 ILKPMMLRRLKEDVEK------------------------NLAPKQETIIEVELTNIQKK 780
Query: 380 IYRKFV--SLDHIKELLMETRSP--LAELGVLKKLCDHPRLLSARACCLLNLGTFSAQDG 435
YR + + + + T P L + L+K C+HP L++ +L +
Sbjct: 781 YYRAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILT------EFR 834
Query: 436 NEGEDSPDVDHIDQVTDDTLMEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERL 495
P H+ ++ +GK++ + LL +L+ GH+ L+FSQ + L+I+E
Sbjct: 835 EACHIIPHDFHLQ-----AMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDY 889
Query: 496 LKNRHFKTLRIDGTVTHLLEREKRINLFQQNKDYSVFLLTTQVGGVGLTLTAATRVVIFD 555
L R + RIDG V L + + + D VFLL T+ GG+G+ LTAA +IFD
Sbjct: 890 LIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFD 949
Query: 556 PSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFK----DSLIRQTTGE 611
WNP D QA R +RIGQ + V VYRLIT + E +++ + K ++++ +G
Sbjct: 950 SDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1009
Query: 612 KKN--PFRYFSKQELREL 627
N + FSK+E+ +L
Sbjct: 1010 DGNITGIQQFSKKEIEDL 1027
>gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription
factor-associated, 170kDa [Homo sapiens]
Length = 1849
Score = 221 bits (564), Expect = 3e-57
Identities = 179/576 (31%), Positives = 276/576 (47%), Gaps = 72/576 (12%)
Query: 92 LHNQLFEHQKEGIAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLSGMFDASLVNHV--- 148
++ +L ++Q++G+ +L L + + GIL DDMGLGKT+Q I L+G +
Sbjct: 1262 INAELRKYQQDGVNWLAFLNKY-KLHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSK 1320
Query: 149 ---------LLIMPTNLINTWVKEFIKWTPGMRVKTFH--GPSKDERTRNLNRIQQRNGV 197
L++ P L WV E K+ + H GP ER R +++++ N +
Sbjct: 1321 LAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPT-ERIRLQHQVKRHN-L 1378
Query: 198 IITTYQMLINNWQQLSSFRGQEFVWDYVILDEAHKIKTSSTKSAICARAIPASNRLLLTG 257
I+ +Y ++ N+ + FR +F +Y ILDE H IK TK + + + A+ R++L+G
Sbjct: 1379 IVASYDVVRND---IDFFRNIKF--NYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSG 1433
Query: 258 TPIQNNLQELWSLFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENL 317
TPIQNN+ ELWSLFDF G LGT + F Y PI +R+ ++ E+ G + L
Sbjct: 1434 TPIQNNVLELWSLFDFLMPG-FLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDAL 1492
Query: 318 MAIIKPYFLRRTKEDVQKKKSSNPEARLNEKNPDV--DAICEMPSLSRK--NDLIIWIRL 373
+ P+ LRR KEDV L + P + D C + L + D
Sbjct: 1493 HRQVLPFLLRRMKEDV-----------LQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAK 1541
Query: 374 VPLQEEIYRKFVSLDHIKELLMETRSPLAELGVLKKLCDHPRLL----------SARACC 423
+ E + +S + K L T L L+KLC+HP L+ +A
Sbjct: 1542 CDVDETVSSATLSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKTTAEKLA 1601
Query: 424 LLNLGTFSAQDGNEGEDSPDVDHIDQVTDDTLM-----EESGKMIFLMDLLKRLRDEGHQ 478
+ N Q +P + + Q+ D + ESG + H+
Sbjct: 1602 VQNSSLHDIQ------HAPKLSALKQLLLDCGLGNGSTSESGTESVVAQ---------HR 1646
Query: 479 TLVFSQSRQILNIIERLLKNRHFKT---LRIDGTVTHLLEREKRINLFQQNKDYSVFLLT 535
L+F Q + +L+I+E L H + LR+DG++ +R ++ F + V LLT
Sbjct: 1647 ILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPP-GQRHSIVSRFNNDPSIDVLLLT 1705
Query: 536 TQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIY 595
T VGG+GL LT A VV + WNP D QA+DR +RIGQK V VYRLIT GT+EEKI
Sbjct: 1706 THVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIM 1765
Query: 596 RRQVFKDSLIRQTTGEKKNPFRYFSKQELRELFTIE 631
Q FK ++ ++ + + +L +LFT++
Sbjct: 1766 GLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLD 1801
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 221 bits (562), Expect = 4e-57
Identities = 166/557 (29%), Positives = 273/557 (49%), Gaps = 80/557 (14%)
Query: 93 HNQLFEHQKEGIAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLSGMFDASLVNHVLLIM 152
+N+L E+Q EG+ +L + + R ILAD+MGLGKT+Q I FL ++ + L+I
Sbjct: 965 NNKLREYQLEGVNWLLFNWYNMRNC-ILADEMGLGKTIQSITFLYEIYLKGIHGPFLVIA 1023
Query: 153 PTNLINTWVKEFIKWTPGMRVKTFHGPSKDERTRNLNRIQQRNG------------VIIT 200
P + I W +EF WT + V +HG RT L + ++ IIT
Sbjct: 1024 PLSTIPNWEREFRTWTE-LNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIIT 1082
Query: 201 TYQMLINNWQQLSSFRGQEFVWDYVILDEAHKIKTSSTKSAICARAIPASNRLLLTGTPI 260
T++M++ + +L + W V++DEAH++K + K + + +++LLTGTP+
Sbjct: 1083 TFEMILTDCPEL-----RNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPL 1137
Query: 261 QNNLQELWSLFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAI 320
QN ++EL+SL F + S + TF E+ + T + + L AI
Sbjct: 1138 QNTVEELFSLLHFL-EPSRFPSETTFMQEFGDLKTEEQV---------------QKLQAI 1181
Query: 321 IKPYFLRRTKEDVQKKKSSNPEARLNEKNPDVDAICEMPSLSRKNDLIIWIRLVPLQEEI 380
+KP LRR KEDV+K +L+ K + II + L +Q++
Sbjct: 1182 LKPMMLRRLKEDVEK------------------------NLAPKEETIIEVELTNIQKKY 1217
Query: 381 YRKFV--SLDHIKELLMETRSP--LAELGVLKKLCDHPRLLSARACCLLNLGTFSAQDGN 436
YR + + + + + P L + L+K C+HP L++ +L
Sbjct: 1218 YRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILE-----EFKET 1272
Query: 437 EGEDSPDVDHIDQVTDDTLMEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLL 496
+SPD +++ +GK++ + LL +L+ GH+ L+FSQ + L+I+E L
Sbjct: 1273 HNAESPDFQL------QAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYL 1326
Query: 497 KNRHFKTLRIDGTVTHLLEREKRINLFQQNKDYSVFLLTTQVGGVGLTLTAATRVVIFDP 556
R + RIDG V L + + + D VFLL T+ GG+G+ LTAA +IFD
Sbjct: 1327 IQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDS 1386
Query: 557 SWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFK---DSLIRQTTGEKK 613
WNP D QA R +RIGQ ++V +YRLIT + E +++ + K D + Q+ ++
Sbjct: 1387 DWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRE 1446
Query: 614 NP---FRYFSKQELREL 627
N + SK+E+ +L
Sbjct: 1447 NATNGVQQLSKKEIEDL 1463
>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
sapiens]
Length = 2715
Score = 220 bits (560), Expect = 8e-57
Identities = 170/556 (30%), Positives = 269/556 (48%), Gaps = 81/556 (14%)
Query: 94 NQLFEHQKEGIAFL-YSLYRDGRKGGILADDMGLGKTVQIIAFLSGMFDASLVNHVLLIM 152
NQL E+Q EG+ +L ++ Y RK ILAD+MGLGKT+Q I FLS +F + L+I
Sbjct: 459 NQLREYQLEGMNWLLFNWYN--RKNCILADEMGLGKTIQSITFLSEIFLRGIHGPFLIIA 516
Query: 153 PTNLINTWVKEFIKWTPGMRVKTFHGPSKDERTRNLNRIQQRNG------------VIIT 200
P + I W +EF WT M +HG + + R+ V+IT
Sbjct: 517 PLSTITNWEREFRTWTE-MNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVFKFHVVIT 575
Query: 201 TYQMLINNWQQLSSFRGQEFVWDYVILDEAHKIKTSSTKSAICARAIPASNRLLLTGTPI 260
T++M++ + +L W VI+DEAH++K + K + + +++LLTGTP+
Sbjct: 576 TFEMILADCPELKKIH-----WSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPL 630
Query: 261 QNNLQELWSLFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAI 320
QN+++EL+SL +F + S + F E+ + T + K L +I
Sbjct: 631 QNSVEELFSLLNFL-EPSQFPSETAFLEEFGDLKTEEQVK---------------KLQSI 674
Query: 321 IKPYFLRRTKEDVQKKKSSNPEARLNEKNPDVDAICEMPSLSRKNDLIIWIRLVPLQEEI 380
+KP LRR K+DV+K +L+ K + II + L +Q++
Sbjct: 675 LKPMMLRRLKDDVEK------------------------NLAPKQETIIEVELTNIQKKY 710
Query: 381 YRKFV--SLDHIKELLMETRSP--LAELGVLKKLCDHPRLLSARACCLLNLGTFSAQDGN 436
YR + + + + + P + + L+K C+HP L++ +L F
Sbjct: 711 YRAILEKNFSFLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILE--DFRK---T 765
Query: 437 EGEDSPDVDHIDQVTDDTLMEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLL 496
D+PD +++ +GK++ + LL +L GH+ L+FSQ + L+I+E L
Sbjct: 766 HSPDAPDFQL------QAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYL 819
Query: 497 KNRHFKTLRIDGTVTHLLEREKRINLFQQNKDYSVFLLTTQVGGVGLTLTAATRVVIFDP 556
R + RIDG V L + + + D VFLL T+ GG+G+ LTAA +IFD
Sbjct: 820 IQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDS 879
Query: 557 SWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFK---DSLIRQTTGEK- 612
WNP D QA R +RIGQ + V VYRLIT + E +++ + K D + Q K
Sbjct: 880 DWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKG 939
Query: 613 -KNPFRYFSKQELREL 627
N + SK E+ +L
Sbjct: 940 GTNGVQQLSKMEVEDL 955
>gi|190358536 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 219 bits (557), Expect = 2e-56
Identities = 167/527 (31%), Positives = 267/527 (50%), Gaps = 64/527 (12%)
Query: 99 HQKEGIAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLSGMFDASLVNHVLLIMPTNLIN 158
+QK G+ +L +++ G G ILAD+MGLGKT+Q IAFL+ ++ L+++P + I+
Sbjct: 500 YQKVGLNWLALVHKHGLNG-ILADEMGLGKTIQAIAFLAYLYQEGNNGPHLIVVPASTID 558
Query: 159 TWVKEFIKWTPGMRVKTFHGPSKDERTR---NLNRIQQRNGVIITTYQMLINNWQQLSSF 215
W++E W P ++V ++G S++ER + N++ + VI+TTY I++ S F
Sbjct: 559 NWLREVNLWCPTLKVLCYYG-SQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLF 617
Query: 216 RGQEFVWDYVILDEAHKIKTSSTKSAICARAIPASNRLLLTGTPIQNNLQELWSLFDFAC 275
R + +Y I DE H +K + I A+NRLLLTGTP+QNNL EL SL +F
Sbjct: 618 RRLKL--NYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVM 675
Query: 276 QGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAIIKPYFLRRTKEDVQK 335
+ + + + A E+ E+ K IIKP+ LRR KE+V
Sbjct: 676 PHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAK------QIIKPFILRRVKEEV-- 727
Query: 336 KKSSNPEARLNEKNPDVDAICEMPSLSRKNDLIIWIRLVPLQEEIYRKFVS--LDHIKEL 393
L + P D I E+ ++S K QE++Y + I L
Sbjct: 728 ---------LKQLPPKKDRI-ELCAMSEK------------QEQLYLGLFNRLKKSINNL 765
Query: 394 LMETRSPLAELGV-LKKLCDHPRLLSA--RACCLLNLGTFSAQDGNEGEDSPDV------ 444
+ E + + + + L+K+ +HP L A L + ++ E +PD+
Sbjct: 766 VTEKNTEMCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDME 825
Query: 445 --------------DHIDQV-TDDTLMEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQIL 489
HI+ D L+ +SGK L +L L+ +G + ++FSQ +L
Sbjct: 826 VMTDFELHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMML 885
Query: 490 NIIERLLKNRHFKTLRIDGTVTHLLEREKRINLFQQNKDYSVFLLTTQVGGVGLTLTAAT 549
+I+E LLK+ + LR+DG T + ER I+ F + D VFLL+T+ GG+G+ LT+A
Sbjct: 886 DILEVLLKHHQHRYLRLDGK-TQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSAN 944
Query: 550 RVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYR 596
V++ D NP D QA DR +R+GQ + V+V +LI+ GT+EE + +
Sbjct: 945 VVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLK 991
>gi|190358532 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 219 bits (557), Expect = 2e-56
Identities = 167/527 (31%), Positives = 267/527 (50%), Gaps = 64/527 (12%)
Query: 99 HQKEGIAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLSGMFDASLVNHVLLIMPTNLIN 158
+QK G+ +L +++ G G ILAD+MGLGKT+Q IAFL+ ++ L+++P + I+
Sbjct: 500 YQKVGLNWLALVHKHGLNG-ILADEMGLGKTIQAIAFLAYLYQEGNNGPHLIVVPASTID 558
Query: 159 TWVKEFIKWTPGMRVKTFHGPSKDERTR---NLNRIQQRNGVIITTYQMLINNWQQLSSF 215
W++E W P ++V ++G S++ER + N++ + VI+TTY I++ S F
Sbjct: 559 NWLREVNLWCPTLKVLCYYG-SQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLF 617
Query: 216 RGQEFVWDYVILDEAHKIKTSSTKSAICARAIPASNRLLLTGTPIQNNLQELWSLFDFAC 275
R + +Y I DE H +K + I A+NRLLLTGTP+QNNL EL SL +F
Sbjct: 618 RRLKL--NYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVM 675
Query: 276 QGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAIIKPYFLRRTKEDVQK 335
+ + + + A E+ E+ K IIKP+ LRR KE+V
Sbjct: 676 PHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAK------QIIKPFILRRVKEEV-- 727
Query: 336 KKSSNPEARLNEKNPDVDAICEMPSLSRKNDLIIWIRLVPLQEEIYRKFVS--LDHIKEL 393
L + P D I E+ ++S K QE++Y + I L
Sbjct: 728 ---------LKQLPPKKDRI-ELCAMSEK------------QEQLYLGLFNRLKKSINNL 765
Query: 394 LMETRSPLAELGV-LKKLCDHPRLLSA--RACCLLNLGTFSAQDGNEGEDSPDV------ 444
+ E + + + + L+K+ +HP L A L + ++ E +PD+
Sbjct: 766 VTEKNTEMCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDME 825
Query: 445 --------------DHIDQV-TDDTLMEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQIL 489
HI+ D L+ +SGK L +L L+ +G + ++FSQ +L
Sbjct: 826 VMTDFELHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMML 885
Query: 490 NIIERLLKNRHFKTLRIDGTVTHLLEREKRINLFQQNKDYSVFLLTTQVGGVGLTLTAAT 549
+I+E LLK+ + LR+DG T + ER I+ F + D VFLL+T+ GG+G+ LT+A
Sbjct: 886 DILEVLLKHHQHRYLRLDGK-TQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSAN 944
Query: 550 RVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYR 596
V++ D NP D QA DR +R+GQ + V+V +LI+ GT+EE + +
Sbjct: 945 VVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLK 991
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 218 bits (555), Expect = 3e-56
Identities = 169/558 (30%), Positives = 275/558 (49%), Gaps = 84/558 (15%)
Query: 94 NQLFEHQKEGIAFL-YSLYRDGRKGGILADDMGLGKTVQIIAFLSGMFDASLVNHVLLIM 152
NQL E+Q EG+ +L ++ Y R+ ILAD+MGLGKT+Q I FL + + L+I
Sbjct: 858 NQLREYQLEGLNWLLFNWYN--RRNCILADEMGLGKTIQSITFLYEILLTGIRGPFLIIA 915
Query: 153 PTNLINTWVKEFIKWTPGMRVKTFHGPS-------------KDERTRNLNRIQQRNGVII 199
P + I W +EF WT + V +HG +D + R + R R II
Sbjct: 916 PLSTIANWEREFRTWTD-INVVVYHGSLISRQMIQQYEMYFRDSQGRII-RGAYRFQAII 973
Query: 200 TTYQMLINNWQQLSSFRGQEFVWDYVILDEAHKIKTSSTKSAICARAIPASNRLLLTGTP 259
TT++M++ +L++ W VI+DEAH++K + K + + +++LLTGTP
Sbjct: 974 TTFEMILGGCGELNAIE-----WRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTP 1028
Query: 260 IQNNLQELWSLFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMA 319
+QN ++EL+SL F + + TF E+ + T + + L A
Sbjct: 1029 LQNTVEELFSLLHFL-EPLRFPSESTFMQEFGDLKTEEQV---------------QKLQA 1072
Query: 320 IIKPYFLRRTKEDVQKKKSSNPEARLNEKNPDVDAICEMPSLSRKNDLIIWIRLVPLQEE 379
I+KP LRR KEDV+KK L+ K + II + L +Q++
Sbjct: 1073 ILKPMMLRRLKEDVEKK------------------------LAPKEETIIEVELTNIQKK 1108
Query: 380 IYRKFV--SLDHIKELLMETRSP--LAELGVLKKLCDHPRLLSARACCLLNLGTFSAQDG 435
YR + + + + +T P + + L+K C+HP L+ +L G F
Sbjct: 1109 YYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKCCNHPYLIKGAEEKIL--GEFRDTYN 1166
Query: 436 NEGEDSPDVDHIDQVTDDTLMEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERL 495
D H+ +++ +GK++ + LL +++ GH+ L+FSQ + L+I+E
Sbjct: 1167 PAASDF----HLQ-----AMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDY 1217
Query: 496 LKNRHFKTLRIDGTVTHLLEREKRINLFQQNKDYSVFLLTTQVGGVGLTLTAATRVVIFD 555
L ++ + RIDG V L + + + D VFLL T+ GG+G+ LTAA +IFD
Sbjct: 1218 LIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFD 1277
Query: 556 PSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFK----DSLIRQTTGE 611
WNP D QA R +RIGQ + V VYRL+T + E +++ R K ++++ +G
Sbjct: 1278 SDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGR 1337
Query: 612 KKN--PFRYFSKQELREL 627
+ N + SK+E+ +L
Sbjct: 1338 ESNVGGIQQLSKKEIEDL 1355
>gi|190358534 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform b [Homo sapiens]
Length = 1026
Score = 216 bits (551), Expect = 8e-56
Identities = 166/527 (31%), Positives = 269/527 (51%), Gaps = 66/527 (12%)
Query: 99 HQKEGIAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLSGMFDASLVNHVLLIMPTNLIN 158
+QK G+ +L +++ G G ILAD+MGLGKT+Q IAFL+ ++ L+++P + I+
Sbjct: 500 YQKVGLNWLALVHKHGLNG-ILADEMGLGKTIQAIAFLAYLYQEGNNGPHLIVVPASTID 558
Query: 159 TWVKEFIKWTPGMRVKTFHGPSKDERTR---NLNRIQQRNGVIITTYQMLINNWQQLSSF 215
W++E W P ++V ++G S++ER + N++ + VI+TTY I++ S F
Sbjct: 559 NWLREVNLWCPTLKVLCYYG-SQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLF 617
Query: 216 RGQEFVWDYVILDEAHKIKTSSTKSAICARAIPASNRLLLTGTPIQNNLQELWSLFDFAC 275
R + +Y I DE H +K + I A+NRLLLTGTP+QNNL EL SL +F
Sbjct: 618 RRLKL--NYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVM 675
Query: 276 QGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAIIKPYFLRRTKEDVQK 335
+ + + + A E+ E+ K IIKP+ LRR KE+V
Sbjct: 676 PHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAK------QIIKPFILRRVKEEV-- 727
Query: 336 KKSSNPEARLNEKNPDVDAICEMPSLSRKNDLIIWIRLVPLQEEIYRKFVSLDHIKELL- 394
L + P D I E+ ++S K QE++Y + +K+ +
Sbjct: 728 ---------LKQLPPKKDRI-ELCAMSEK------------QEQLYLGL--FNRLKKSIN 763
Query: 395 -METRSPLAELGV-LKKLCDHPRLLSA--RACCLLNLGTFSAQDGNEGEDSPDV------ 444
+E + + + + L+K+ +HP L A L + ++ E +PD+
Sbjct: 764 NLEKNTEMCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDME 823
Query: 445 --------------DHIDQV-TDDTLMEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQIL 489
HI+ D L+ +SGK L +L L+ +G + ++FSQ +L
Sbjct: 824 VMTDFELHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMML 883
Query: 490 NIIERLLKNRHFKTLRIDGTVTHLLEREKRINLFQQNKDYSVFLLTTQVGGVGLTLTAAT 549
+I+E LLK+ + LR+DG T + ER I+ F + D VFLL+T+ GG+G+ LT+A
Sbjct: 884 DILEVLLKHHQHRYLRLDGK-TQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSAN 942
Query: 550 RVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYR 596
V++ D NP D QA DR +R+GQ + V+V +LI+ GT+EE + +
Sbjct: 943 VVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLK 989
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 213 bits (541), Expect = 1e-54
Identities = 157/529 (29%), Positives = 251/529 (47%), Gaps = 76/529 (14%)
Query: 92 LHNQLFEHQKEGIAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLSGMFDASLVNH-VLL 150
++ L +Q +G+ ++ SLY + G ILAD+MGLGKT+Q IA ++ + + +N L+
Sbjct: 720 INGTLKHYQLQGLEWMVSLYNNNLNG-ILADEMGLGKTIQTIALITYLMEHKRLNGPYLI 778
Query: 151 IMPTNLINTWVKEFIKWTPGMRVKTFHGPSKDERTRNLNRIQQRNGVIITTYQMLINNWQ 210
I+P + ++ W EF KW P + ++ G R+ + V++TTY+ +I +
Sbjct: 779 IVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKH 838
Query: 211 QLSSFRGQEFVWDYVILDEAHKIKTSSTK-SAICARAIPASNRLLLTGTPIQNNLQELWS 269
L+ R W Y+I+DE H++K K + + A R+LLTGTP+QN L ELW+
Sbjct: 839 ILAKIR-----WKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWA 893
Query: 270 LFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAIIKPYFLRRT 329
L +F ++ + TF+ + P E+ E+ + I L +++P+ LRR
Sbjct: 894 LLNFLLP-TIFKSCSTFEQWFNAPFAMTGERVDLNEEETI--LIIRRLHKVLRPFLLRRL 950
Query: 330 KEDVQKKKSSNPEARLNEKNPDVDAICEMPSLSRKNDLIIWIRLVPLQEEIYRKFVSLDH 389
K++V+ + L K + +I + LQ+ +YR
Sbjct: 951 KKEVESQ------------------------LPEKVEYVIKCDMSALQKILYRHM----Q 982
Query: 390 IKELLMETRSPLAELG------------VLKKLCDHPRLLSARACCLLNLGTFSAQDGNE 437
K +L+ S + G L+K+C+HP + +
Sbjct: 983 AKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMF-------------------Q 1023
Query: 438 GEDSPDVDHIDQ----VTDDTLMEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIE 493
+ +H+ + L SGK L +L +LR H+ L+F Q ++ I+E
Sbjct: 1024 HIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIME 1083
Query: 494 RLLKNRHFKTLRIDGTVTHLLEREKRINLFQQ-NKDYSVFLLTTQVGGVGLTLTAATRVV 552
R+F LR+DGT T +R + F + Y +FLL+T+ GG+GL L AA VV
Sbjct: 1084 DYFAFRNFLYLRLDGT-TKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVV 1142
Query: 553 IFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFK 601
IFD WNP D QA DR +RIGQ+ V V RL T +VEEKI +K
Sbjct: 1143 IFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1191
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 213 bits (541), Expect = 1e-54
Identities = 157/529 (29%), Positives = 251/529 (47%), Gaps = 76/529 (14%)
Query: 92 LHNQLFEHQKEGIAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLSGMFDASLVNH-VLL 150
++ L +Q +G+ ++ SLY + G ILAD+MGLGKT+Q IA ++ + + +N L+
Sbjct: 720 INGTLKHYQLQGLEWMVSLYNNNLNG-ILADEMGLGKTIQTIALITYLMEHKRLNGPYLI 778
Query: 151 IMPTNLINTWVKEFIKWTPGMRVKTFHGPSKDERTRNLNRIQQRNGVIITTYQMLINNWQ 210
I+P + ++ W EF KW P + ++ G R+ + V++TTY+ +I +
Sbjct: 779 IVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKH 838
Query: 211 QLSSFRGQEFVWDYVILDEAHKIKTSSTK-SAICARAIPASNRLLLTGTPIQNNLQELWS 269
L+ R W Y+I+DE H++K K + + A R+LLTGTP+QN L ELW+
Sbjct: 839 ILAKIR-----WKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWA 893
Query: 270 LFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAIIKPYFLRRT 329
L +F ++ + TF+ + P E+ E+ + I L +++P+ LRR
Sbjct: 894 LLNFLLP-TIFKSCSTFEQWFNAPFAMTGERVDLNEEETI--LIIRRLHKVLRPFLLRRL 950
Query: 330 KEDVQKKKSSNPEARLNEKNPDVDAICEMPSLSRKNDLIIWIRLVPLQEEIYRKFVSLDH 389
K++V+ + L K + +I + LQ+ +YR
Sbjct: 951 KKEVESQ------------------------LPEKVEYVIKCDMSALQKILYRHM----Q 982
Query: 390 IKELLMETRSPLAELG------------VLKKLCDHPRLLSARACCLLNLGTFSAQDGNE 437
K +L+ S + G L+K+C+HP + +
Sbjct: 983 AKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMF-------------------Q 1023
Query: 438 GEDSPDVDHIDQ----VTDDTLMEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIE 493
+ +H+ + L SGK L +L +LR H+ L+F Q ++ I+E
Sbjct: 1024 HIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIME 1083
Query: 494 RLLKNRHFKTLRIDGTVTHLLEREKRINLFQQ-NKDYSVFLLTTQVGGVGLTLTAATRVV 552
R+F LR+DGT T +R + F + Y +FLL+T+ GG+GL L AA VV
Sbjct: 1084 DYFAFRNFLYLRLDGT-TKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVV 1142
Query: 553 IFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFK 601
IFD WNP D QA DR +RIGQ+ V V RL T +VEEKI +K
Sbjct: 1143 IFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1191
>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
[Homo sapiens]
Length = 2000
Score = 212 bits (540), Expect = 2e-54
Identities = 180/667 (26%), Positives = 300/667 (44%), Gaps = 116/667 (17%)
Query: 96 LFEHQKEGIAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLSGMFDASLVNHVLLIM-PT 154
L +Q EG+ +L + G ILAD+MGLGKT+Q I FL ++ L+ P
Sbjct: 736 LHMYQLEGLNWLRFSWAQGTDT-ILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPL 794
Query: 155 NLINTWVKEFIKWTPGMRVKTFHGPSKDERT---------------------RNLNRIQQ 193
+ I W +EF W P V T+ G KD R + Q
Sbjct: 795 STIINWEREFQMWAPKFYVVTYTG-DKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQV 853
Query: 194 RNGVIITTYQMLINNWQQLSSFRGQEFVWDYVILDEAHKIKTSSTKSAICARAIPASNRL 253
+ V++T+Y+++ + L S R W +++DEAH++K + +K ++L
Sbjct: 854 KFHVLLTSYELITIDQAALGSIR-----WACLVVDEAHRLKNNQSKFFRVLNGYKIDHKL 908
Query: 254 LLTGTPIQNNLQELWSLFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKI 313
LLTGTP+QNNL+EL+ L +F L+ F E+ + + K
Sbjct: 909 LLTGTPLQNNLEELFHLLNFLTP-ERFNNLEGFLEEFADISKEDQIK------------- 954
Query: 314 SENLMAIIKPYFLRRTKEDVQKKKSSNPEARLNEKNPDVDAICEMPSLSRKNDLIIWIRL 373
L ++ P+ LRR K DV K MP+ K +LI+ + L
Sbjct: 955 --KLHDLLGPHMLRRLKADVFKN---------------------MPA---KTELIVRVEL 988
Query: 374 VPLQEEIYRKFVSLDHIKELLMETRSPLAELGV---LKKLCDHPRLLSARACCLLNLGTF 430
P+Q++ Y+ ++ + + ++ L + LKK C+HP L A L +
Sbjct: 989 SPMQKKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSG 1048
Query: 431 SAQDGNEGEDSPDVDHIDQVTDDTLMEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQILN 490
+ + G L++ SGK++ L +L++L+++GH+ L+FSQ ++L+
Sbjct: 1049 AYEGG------------------ALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLD 1090
Query: 491 IIERLLKNRHFKTLRIDGTVTHLLEREKRINLFQQNKDYSVFLLTTQVGGVGLTLTAATR 550
++E L +K RIDG +T L +E FLL+T+ GG+G+ L A
Sbjct: 1091 LLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADT 1150
Query: 551 VVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKI----YRRQVFKDSLIR 606
V+IFD WNP D QA R +RIGQ V++YR +T +VEE+I R+ + ++R
Sbjct: 1151 VIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVR 1210
Query: 607 QTTGEKKNPFRYFSKQELRELFTIEDLQNSVTQLQLQSLHAAQRKSDIKLDEHIAYLQSL 666
G K SKQEL +D+ T+ + + + K + D + + +
Sbjct: 1211 PGLGSKAGS---MSKQEL------DDILKFGTEELFKDENEGENKEE---DSSVIHYDNE 1258
Query: 667 GIAGISDHDLMYTCDLSVKEELDVVEESHYIQQRVQKAQFLVEFESQNKEF---LMEQQR 723
IA + D + T E+ DV + Y+ + AQ++V E + +E +++Q+
Sbjct: 1259 AIARLLDRNQDAT------EDTDVQNMNEYLSS-FKVAQYVVREEDKIEEIEREIIKQEE 1311
Query: 724 TRNEGAW 730
+ W
Sbjct: 1312 NVDPDYW 1318
>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
[Homo sapiens]
Length = 1966
Score = 212 bits (540), Expect = 2e-54
Identities = 180/667 (26%), Positives = 300/667 (44%), Gaps = 116/667 (17%)
Query: 96 LFEHQKEGIAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLSGMFDASLVNHVLLIM-PT 154
L +Q EG+ +L + G ILAD+MGLGKT+Q I FL ++ L+ P
Sbjct: 736 LHMYQLEGLNWLRFSWAQGTDT-ILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPL 794
Query: 155 NLINTWVKEFIKWTPGMRVKTFHGPSKDERT---------------------RNLNRIQQ 193
+ I W +EF W P V T+ G KD R + Q
Sbjct: 795 STIINWEREFQMWAPKFYVVTYTG-DKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQV 853
Query: 194 RNGVIITTYQMLINNWQQLSSFRGQEFVWDYVILDEAHKIKTSSTKSAICARAIPASNRL 253
+ V++T+Y+++ + L S R W +++DEAH++K + +K ++L
Sbjct: 854 KFHVLLTSYELITIDQAALGSIR-----WACLVVDEAHRLKNNQSKFFRVLNGYKIDHKL 908
Query: 254 LLTGTPIQNNLQELWSLFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKI 313
LLTGTP+QNNL+EL+ L +F L+ F E+ + + K
Sbjct: 909 LLTGTPLQNNLEELFHLLNFLTP-ERFNNLEGFLEEFADISKEDQIK------------- 954
Query: 314 SENLMAIIKPYFLRRTKEDVQKKKSSNPEARLNEKNPDVDAICEMPSLSRKNDLIIWIRL 373
L ++ P+ LRR K DV K MP+ K +LI+ + L
Sbjct: 955 --KLHDLLGPHMLRRLKADVFKN---------------------MPA---KTELIVRVEL 988
Query: 374 VPLQEEIYRKFVSLDHIKELLMETRSPLAELGV---LKKLCDHPRLLSARACCLLNLGTF 430
P+Q++ Y+ ++ + + ++ L + LKK C+HP L A L +
Sbjct: 989 SPMQKKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSG 1048
Query: 431 SAQDGNEGEDSPDVDHIDQVTDDTLMEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQILN 490
+ + G L++ SGK++ L +L++L+++GH+ L+FSQ ++L+
Sbjct: 1049 AYEGG------------------ALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLD 1090
Query: 491 IIERLLKNRHFKTLRIDGTVTHLLEREKRINLFQQNKDYSVFLLTTQVGGVGLTLTAATR 550
++E L +K RIDG +T L +E FLL+T+ GG+G+ L A
Sbjct: 1091 LLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADT 1150
Query: 551 VVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKI----YRRQVFKDSLIR 606
V+IFD WNP D QA R +RIGQ V++YR +T +VEE+I R+ + ++R
Sbjct: 1151 VIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVR 1210
Query: 607 QTTGEKKNPFRYFSKQELRELFTIEDLQNSVTQLQLQSLHAAQRKSDIKLDEHIAYLQSL 666
G K SKQEL +D+ T+ + + + K + D + + +
Sbjct: 1211 PGLGSKAGS---MSKQEL------DDILKFGTEELFKDENEGENKEE---DSSVIHYDNE 1258
Query: 667 GIAGISDHDLMYTCDLSVKEELDVVEESHYIQQRVQKAQFLVEFESQNKEF---LMEQQR 723
IA + D + T E+ DV + Y+ + AQ++V E + +E +++Q+
Sbjct: 1259 AIARLLDRNQDAT------EDTDVQNMNEYLSS-FKVAQYVVREEDKIEEIEREIIKQEE 1311
Query: 724 TRNEGAW 730
+ W
Sbjct: 1312 NVDPDYW 1318
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.130 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,216,922
Number of Sequences: 37866
Number of extensions: 2114396
Number of successful extensions: 7328
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 122
Number of HSP's that attempted gapping in prelim test: 6835
Number of HSP's gapped (non-prelim): 420
length of query: 1250
length of database: 18,247,518
effective HSP length: 114
effective length of query: 1136
effective length of database: 13,930,794
effective search space: 15825381984
effective search space used: 15825381984
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.