Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 57977325
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|57977325 membrane-associated ring finger (C3HC4) 4 [Homo
sapiens]
(410 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|57977325 membrane-associated ring finger (C3HC4) 4 [Homo sapi... 887 0.0
gi|40255016 membrane-associated RING-CH protein IX [Homo sapiens] 399 e-111
gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo sa... 326 3e-89
gi|8923613 membrane-associated RING-CH protein I [Homo sapiens] 73 4e-13
gi|50539414 cellular modulator of immune recognition isoform 7 [... 72 9e-13
gi|50539412 cellular modulator of immune recognition isoform 6 [... 72 9e-13
gi|50539410 cellular modulator of immune recognition isoform 8 [... 72 9e-13
gi|30425370 membrane-associated ring finger (C3HC4) 3 [Homo sapi... 64 3e-10
gi|53729334 membrane-associated ring finger (C3HC4) 2 isoform 2 ... 60 5e-09
gi|53729332 membrane-associated ring finger (C3HC4) 2 isoform 1 ... 60 5e-09
gi|53729330 membrane-associated ring finger (C3HC4) 2 isoform 1 ... 60 5e-09
gi|33589846 membrane-associated ring finger (C3HC4) 6 [Homo sapi... 51 2e-06
gi|39812378 RAN binding protein 9 [Homo sapiens] 45 1e-04
gi|12383066 axotrophin [Homo sapiens] 44 3e-04
gi|154937342 ring finger protein 190 [Homo sapiens] 44 3e-04
gi|154937340 ring finger protein 190 [Homo sapiens] 44 3e-04
gi|8923415 membrane-associated ring finger (C3HC4) 5 [Homo sapiens] 43 5e-04
gi|157168329 formin 1 [Homo sapiens] 43 6e-04
gi|19923391 homeobox D3 [Homo sapiens] 43 6e-04
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 42 0.001
gi|110431370 espin [Homo sapiens] 41 0.002
gi|38016943 calcium release-activated calcium channel protein 1 ... 40 0.003
gi|160707881 formin 2 [Homo sapiens] 40 0.003
gi|85815829 SH3-domain binding protein 1 [Homo sapiens] 40 0.004
gi|110611914 progesterone receptor [Homo sapiens] 40 0.005
gi|11386183 WAS protein family, member 2 [Homo sapiens] 40 0.005
gi|42544125 splicing factor 1 isoform 2 [Homo sapiens] 40 0.005
gi|42544130 splicing factor 1 isoform 1 [Homo sapiens] 40 0.005
gi|206597502 NESH protein isoform 2 [Homo sapiens] 40 0.005
gi|7705981 NESH protein isoform 1 [Homo sapiens] 40 0.005
>gi|57977325 membrane-associated ring finger (C3HC4) 4 [Homo
sapiens]
Length = 410
Score = 887 bits (2293), Expect = 0.0
Identities = 410/410 (100%), Positives = 410/410 (100%)
Query: 1 MLMPLCGLLWWWWCCCSGWYCYGLCAPAPQMLRHQGLLKCRCRMLFNDLKVFLLRRPPQA 60
MLMPLCGLLWWWWCCCSGWYCYGLCAPAPQMLRHQGLLKCRCRMLFNDLKVFLLRRPPQA
Sbjct: 1 MLMPLCGLLWWWWCCCSGWYCYGLCAPAPQMLRHQGLLKCRCRMLFNDLKVFLLRRPPQA 60
Query: 61 PLPMHGDPQPPGLAANNTLPALGAGGWAGWRGPREVVGREPPPVPPPPPLPPSSVEDDWG 120
PLPMHGDPQPPGLAANNTLPALGAGGWAGWRGPREVVGREPPPVPPPPPLPPSSVEDDWG
Sbjct: 61 PLPMHGDPQPPGLAANNTLPALGAGGWAGWRGPREVVGREPPPVPPPPPLPPSSVEDDWG 120
Query: 121 GPATEPPASLLSSASSDDFCKEKTEDRYSLGSSLDSGMRTPLCRICFQGPEQGELLSPCR 180
GPATEPPASLLSSASSDDFCKEKTEDRYSLGSSLDSGMRTPLCRICFQGPEQGELLSPCR
Sbjct: 121 GPATEPPASLLSSASSDDFCKEKTEDRYSLGSSLDSGMRTPLCRICFQGPEQGELLSPCR 180
Query: 181 CDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAISTKNPLQWQAISLTVIEKVQVAA 240
CDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAISTKNPLQWQAISLTVIEKVQVAA
Sbjct: 181 CDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAISTKNPLQWQAISLTVIEKVQVAA 240
Query: 241 AILGSLFLIASISWLIWSTFSPSARWQRQDLLFQICYGMYGFMDVVCIGLIIHEGPSVYR 300
AILGSLFLIASISWLIWSTFSPSARWQRQDLLFQICYGMYGFMDVVCIGLIIHEGPSVYR
Sbjct: 241 AILGSLFLIASISWLIWSTFSPSARWQRQDLLFQICYGMYGFMDVVCIGLIIHEGPSVYR 300
Query: 301 IFKRWQAVNQQWKVLNYDKTKDLEDQKAGGRTNPRTSSSTQANIPSSEEETAGTPAPEQG 360
IFKRWQAVNQQWKVLNYDKTKDLEDQKAGGRTNPRTSSSTQANIPSSEEETAGTPAPEQG
Sbjct: 301 IFKRWQAVNQQWKVLNYDKTKDLEDQKAGGRTNPRTSSSTQANIPSSEEETAGTPAPEQG 360
Query: 361 PAQAAGHPSGPLSHHHCAYTILHILSHLRPHEQRSPPGSSRELVMRVTTV 410
PAQAAGHPSGPLSHHHCAYTILHILSHLRPHEQRSPPGSSRELVMRVTTV
Sbjct: 361 PAQAAGHPSGPLSHHHCAYTILHILSHLRPHEQRSPPGSSRELVMRVTTV 410
>gi|40255016 membrane-associated RING-CH protein IX [Homo sapiens]
Length = 346
Score = 399 bits (1025), Expect = e-111
Identities = 224/391 (57%), Positives = 250/391 (63%), Gaps = 62/391 (15%)
Query: 37 LLKCRCRMLFNDLKVFLLR---RPPQAPLPMHGDPQPPGLAANNTLPALGAGGWAGWRGP 93
+LK R RM N+LK+ +L RP P P G G A P G G
Sbjct: 1 MLKSRLRMFLNELKLLVLTGGGRPRAEPQPRGGRGGGCGWA-----PFAGCSTRDGDGDE 55
Query: 94 REVVGREPP-------------PVPPP-PPLPPSSVEDDWGGPATEPPASLLSSASSDDF 139
E G EP P+PPP PPLPP P +L
Sbjct: 56 EEYYGSEPRARGLAGDKEPRAGPLPPPAPPLPP--------------PGAL--------- 92
Query: 140 CKEKTEDRYSLGSSLDSGMRTPLCRICFQGPEQGELLSPCRCDGSVKCTHQPCLIKWISE 199
D SL SSLDSG+RTP CRICFQGPEQGELLSPCRCDGSV+CTHQPCLI+WISE
Sbjct: 93 ------DALSLSSSLDSGLRTPQCRICFQGPEQGELLSPCRCDGSVRCTHQPCLIRWISE 146
Query: 200 RGCWSCELCYYKYHVIAISTKNPLQWQAISLTVIEKVQVAAAILGSLFLIASISWLIWST 259
RG WSCELCY+KY V+AISTKNPLQWQAISLTVIEKVQ+AA +LGSLFL+ASISWLIWS+
Sbjct: 147 RGSWSCELCYFKYQVLAISTKNPLQWQAISLTVIEKVQIAAIVLGSLFLVASISWLIWSS 206
Query: 260 FSPSARWQRQDLLFQICYGMYGFMDVVCIGLIIHEGPSVYRIFKRWQAVNQQWKVLNYDK 319
SPSA+WQRQDLLFQICYGMYGFMDVVCIGLIIHEG SVYRIFKRWQAVNQQWKVLNYDK
Sbjct: 207 LSPSAKWQRQDLLFQICYGMYGFMDVVCIGLIIHEGSSVYRIFKRWQAVNQQWKVLNYDK 266
Query: 320 TKDLEDQKAGGRTNPRTSSSTQANIPSSEEETAGTPAPEQGPAQAAGHPSGPLSHHHCAY 379
TKD+ AGG T ++ P+S T+ PA ++ L C Y
Sbjct: 267 TKDIGGD-AGGGTAGKSGPRNSRTGPTS-GATSRPPAAQR---------MRTLLPQRCGY 315
Query: 380 TILHILSHLRPHEQRSPPGSSRELVMRVTTV 410
TILH+L LRP + RS S RE+VMRVTTV
Sbjct: 316 TILHLLGQLRPPDARSSSHSGREVVMRVTTV 346
>gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo
sapiens]
Length = 402
Score = 326 bits (835), Expect = 3e-89
Identities = 183/391 (46%), Positives = 227/391 (58%), Gaps = 53/391 (13%)
Query: 57 PPQAPLPMHGDPQPPGLAANNTLPALGAGGWAGWR--GPREVVGREPP------PVPPPP 108
PP P P G+P P AA LP L A R GP E +G P +PPPP
Sbjct: 28 PPPPPTPPPGEPAPVP-AAPRYLPPLPASPETPERAAGPSEPLGEVAPRCRGADELPPPP 86
Query: 109 -PLPPSSVEDDWGGPATEPPASLLSSASSDDFCKE------------------KTEDRYS 149
PL P+ E G + E P L +A++ E +T S
Sbjct: 87 LPLQPAGQEVAAAGDSGEGPRRLPEAAAAKGGPGESEAGAGGERERRGAGDQPETRSVCS 146
Query: 150 LGSSLDSG----------MRTPLCRICFQGPEQGELLSPCRCDGSVKCTHQPCLIKWISE 199
SS G P+C+ICFQG EQGELL+PCRCDGSV+ THQ CL+KWISE
Sbjct: 147 SRSSSSGGGDQRAGHQHQHHQPICKICFQGAEQGELLNPCRCDGSVRYTHQLCLLKWISE 206
Query: 200 RGCWSCELCYYKYHVIAISTKNPLQWQAISLTVIEKVQVAAAILGSLFLIASISWLIWST 259
RG W+CELC Y+YHVIAI K P QWQ+IS+T++EKVQ+ A ILGSLFLIAS++WL+WS
Sbjct: 207 RGSWTCELCCYRYHVIAIKMKQPCQWQSISITLVEKVQMIAVILGSLFLIASVTWLLWSA 266
Query: 260 FSPSARWQRQDLLFQICYGMYGFMDVVCIGLIIHEGPSVYRIFKRWQAVNQQWKVLNYDK 319
FSP A WQR+D+LFQICYGMYGFMD+VCIGLI+HEG +VYR+FKRW+AVN W VLNYDK
Sbjct: 267 FSPYAVWQRKDILFQICYGMYGFMDLVCIGLIVHEGAAVYRVFKRWRAVNLHWDVLNYDK 326
Query: 320 TKDLEDQKAGGRTNPRTSSSTQANIPSSEEETAGTPAPEQGPAQAAGHPSGPLSHHHCAY 379
D+E+ G +S+S +P + P Q + C Y
Sbjct: 327 ATDIEESSRG-----ESSTSRTLWLPLTALRNRNLVHPTQLTS----------PRFQCGY 371
Query: 380 TILHILSHLRPHEQRSPPGSSRELVMRVTTV 410
+LH+ + +RPHE S SS E+VMRVT+V
Sbjct: 372 VLLHLFNRMRPHEDLSEDNSSGEVVMRVTSV 402
Score = 30.4 bits (67), Expect = 3.0
Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 83 GAGGWAGWRGPREVVGREPPPVPPPPPLPPSSVEDDWGGPATEPPA 128
G G + RG E EPPP PPPPP PP+ G PA P A
Sbjct: 5 GGHGGSRCRGA-ESGDAEPPPQPPPPP-PPTPPP---GEPAPVPAA 45
>gi|8923613 membrane-associated RING-CH protein I [Homo sapiens]
Length = 272
Score = 73.2 bits (178), Expect = 4e-13
Identities = 56/220 (25%), Positives = 94/220 (42%), Gaps = 31/220 (14%)
Query: 162 LCRICF-QGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAISTK 220
+CRIC +G E+ L++PCRC G+++ HQ CL +WI CELC Y + ++ K
Sbjct: 62 ICRICHCEGDEESPLITPCRCTGTLRFVHQSCLHQWIKSSDTRCCELCKYDF-IMETKLK 120
Query: 221 NPLQWQAISLTVIEKVQVAAAILGSLFLIASISWLIWSTFSPSA------------RWQR 268
+W+ + +T E+ ++ ++ + I + W ++ +A W
Sbjct: 121 PLRKWEKLQMTTSERRKIFCSVTFHVIAITCVVWSLYVLIDRTAEEIKQGNDNGVLEWPF 180
Query: 269 QDLLFQICYGMYG---FMDVVCIGLIIHEGPSVY-RIFKRWQAVNQQWKVLNY-DKTKDL 323
L + G G FM V C VY ++++R +A N+ V N D K L
Sbjct: 181 WTKLVVVAIGFTGGLVFMYVQC---------KVYVQLWRRLKAYNRVIFVQNCPDTAKKL 231
Query: 324 EDQKAGGRTNPRTSSSTQANIPSSEEETAGTPAPEQGPAQ 363
E + N T +P + P+ E GP +
Sbjct: 232 EKNFS---CNVNTDIKDAVVVPVPQTGANSLPSAEGGPPE 268
>gi|50539414 cellular modulator of immune recognition isoform 7
[Homo sapiens]
Length = 291
Score = 72.0 bits (175), Expect = 9e-13
Identities = 52/210 (24%), Positives = 96/210 (45%), Gaps = 9/210 (4%)
Query: 162 LCRICF-QGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAISTK 220
+CRIC +G ++ L++PC C GS+ HQ CL +WI CELC Y++ ++ K
Sbjct: 79 ICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF-IMETKLK 137
Query: 221 NPLQWQAISLTVIEKVQVAAAILGSLFLIASISWLIWSTFSPSARWQRQDLLFQIC-YGM 279
+W+ + +T E+ ++ ++ + I + W ++ +A +Q I +
Sbjct: 138 PLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEEIKQGQATGILEWPF 197
Query: 280 YGFMDVVCIG-----LIIHEGPSVY-RIFKRWQAVNQQWKVLNYDKTKDLEDQKAGGRTN 333
+ + VV IG L ++ VY +++KR +A N+ V N +T + T
Sbjct: 198 WTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQNCPETSKKNIFEKSPLTE 257
Query: 334 PRTSSSTQANIPSSEEETAGTPAPEQGPAQ 363
P + I S+ ++ PE A+
Sbjct: 258 PNFENKHGYGICHSDTNSSCCTEPEDTGAE 287
>gi|50539412 cellular modulator of immune recognition isoform 6
[Homo sapiens]
Length = 291
Score = 72.0 bits (175), Expect = 9e-13
Identities = 52/210 (24%), Positives = 96/210 (45%), Gaps = 9/210 (4%)
Query: 162 LCRICF-QGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAISTK 220
+CRIC +G ++ L++PC C GS+ HQ CL +WI CELC Y++ ++ K
Sbjct: 79 ICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF-IMETKLK 137
Query: 221 NPLQWQAISLTVIEKVQVAAAILGSLFLIASISWLIWSTFSPSARWQRQDLLFQIC-YGM 279
+W+ + +T E+ ++ ++ + I + W ++ +A +Q I +
Sbjct: 138 PLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEEIKQGQATGILEWPF 197
Query: 280 YGFMDVVCIG-----LIIHEGPSVY-RIFKRWQAVNQQWKVLNYDKTKDLEDQKAGGRTN 333
+ + VV IG L ++ VY +++KR +A N+ V N +T + T
Sbjct: 198 WTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQNCPETSKKNIFEKSPLTE 257
Query: 334 PRTSSSTQANIPSSEEETAGTPAPEQGPAQ 363
P + I S+ ++ PE A+
Sbjct: 258 PNFENKHGYGICHSDTNSSCCTEPEDTGAE 287
>gi|50539410 cellular modulator of immune recognition isoform 8
[Homo sapiens]
Length = 291
Score = 72.0 bits (175), Expect = 9e-13
Identities = 52/210 (24%), Positives = 96/210 (45%), Gaps = 9/210 (4%)
Query: 162 LCRICF-QGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAISTK 220
+CRIC +G ++ L++PC C GS+ HQ CL +WI CELC Y++ ++ K
Sbjct: 79 ICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF-IMETKLK 137
Query: 221 NPLQWQAISLTVIEKVQVAAAILGSLFLIASISWLIWSTFSPSARWQRQDLLFQIC-YGM 279
+W+ + +T E+ ++ ++ + I + W ++ +A +Q I +
Sbjct: 138 PLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEEIKQGQATGILEWPF 197
Query: 280 YGFMDVVCIG-----LIIHEGPSVY-RIFKRWQAVNQQWKVLNYDKTKDLEDQKAGGRTN 333
+ + VV IG L ++ VY +++KR +A N+ V N +T + T
Sbjct: 198 WTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQNCPETSKKNIFEKSPLTE 257
Query: 334 PRTSSSTQANIPSSEEETAGTPAPEQGPAQ 363
P + I S+ ++ PE A+
Sbjct: 258 PNFENKHGYGICHSDTNSSCCTEPEDTGAE 287
>gi|30425370 membrane-associated ring finger (C3HC4) 3 [Homo
sapiens]
Length = 253
Score = 63.5 bits (153), Expect = 3e-10
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 161 PLCRICFQGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHV 214
P+CRIC +G Q +LLSPC C G++ H+ CL W+S CELC++++ V
Sbjct: 69 PMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAV 122
>gi|53729334 membrane-associated ring finger (C3HC4) 2 isoform 2
[Homo sapiens]
Length = 176
Score = 59.7 bits (143), Expect = 5e-09
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 153 SLDSGMRTPLCRICFQGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKY 212
+LD+ P CRIC +G LLSPC C G++ H+ CL KW+S CELC+ ++
Sbjct: 54 ALDTPSDGPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113
Query: 213 HV 214
V
Sbjct: 114 AV 115
>gi|53729332 membrane-associated ring finger (C3HC4) 2 isoform 1
[Homo sapiens]
Length = 246
Score = 59.7 bits (143), Expect = 5e-09
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 153 SLDSGMRTPLCRICFQGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKY 212
+LD+ P CRIC +G LLSPC C G++ H+ CL KW+S CELC+ ++
Sbjct: 54 ALDTPSDGPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113
Query: 213 HV 214
V
Sbjct: 114 AV 115
>gi|53729330 membrane-associated ring finger (C3HC4) 2 isoform 1
[Homo sapiens]
Length = 246
Score = 59.7 bits (143), Expect = 5e-09
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 153 SLDSGMRTPLCRICFQGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKY 212
+LD+ P CRIC +G LLSPC C G++ H+ CL KW+S CELC+ ++
Sbjct: 54 ALDTPSDGPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113
Query: 213 HV 214
V
Sbjct: 114 AV 115
>gi|33589846 membrane-associated ring finger (C3HC4) 6 [Homo
sapiens]
Length = 910
Score = 50.8 bits (120), Expect = 2e-06
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 162 LCRIC-FQGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKY 212
+CR+C +G + L PC C GS+K HQ CL++W+ CELC +++
Sbjct: 8 ICRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRF 59
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 45.1 bits (105), Expect = 1e-04
Identities = 32/87 (36%), Positives = 39/87 (44%), Gaps = 20/87 (22%)
Query: 57 PPQAPLPMHGD--PQPPGLAANNTLPALGAGGWAGWRG-------------PREVVGREP 101
PP A P+ G P PP ++A ++ PA GG AG G P
Sbjct: 23 PPAALAPVSGVVLPAPPAVSAGSS-PAGSPGGGAGGEGLGAAAAALLLHPPPPPPPATAA 81
Query: 102 PPVPPPPPLPPSSVEDDWGGPATEPPA 128
PP PPPPP PP+S PA+ PPA
Sbjct: 82 PPPPPPPPPPPASA----AAPASGPPA 104
>gi|12383066 axotrophin [Homo sapiens]
Length = 704
Score = 43.5 bits (101), Expect = 3e-04
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Query: 162 LCRICFQGPEQGE--LLSPCRCDGSVKCTHQPCLIKWI--------SERGCWSCELCYYK 211
LCRIC L+ PC+C GS++ HQ C+ KW+ S +CELC K
Sbjct: 551 LCRICQMAAASSSNLLIEPCKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTCELCKEK 610
>gi|154937342 ring finger protein 190 [Homo sapiens]
Length = 808
Score = 43.5 bits (101), Expect = 3e-04
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Query: 155 DSGMRTPLCRIC--FQGPEQGELLSPCRCDGSVKCTHQPCLIKWISER--------GCWS 204
DS LCRIC G LL PC C GS++ HQ CL KW+ + +
Sbjct: 651 DSEEEGDLCRICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKT 710
Query: 205 CELC 208
CE+C
Sbjct: 711 CEMC 714
>gi|154937340 ring finger protein 190 [Homo sapiens]
Length = 808
Score = 43.5 bits (101), Expect = 3e-04
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Query: 155 DSGMRTPLCRIC--FQGPEQGELLSPCRCDGSVKCTHQPCLIKWISER--------GCWS 204
DS LCRIC G LL PC C GS++ HQ CL KW+ + +
Sbjct: 651 DSEEEGDLCRICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKT 710
Query: 205 CELC 208
CE+C
Sbjct: 711 CEMC 714
>gi|8923415 membrane-associated ring finger (C3HC4) 5 [Homo sapiens]
Length = 278
Score = 43.1 bits (100), Expect = 5e-04
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 163 CRICFQGPEQ---GELLSPCRCDGSVKCTHQPCLIKWISER 200
C +CF E E + PCRC GS K HQ CL +W+ E+
Sbjct: 14 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEK 54
>gi|157168329 formin 1 [Homo sapiens]
Length = 1196
Score = 42.7 bits (99), Expect = 6e-04
Identities = 26/71 (36%), Positives = 29/71 (40%), Gaps = 15/71 (21%)
Query: 57 PPQAPLPMHGDPQPPGLAANNTLPALGAGGWAGWRGPREVVGREPPPVPPPPPLPPSSVE 116
PP P+ G P PP LP + G PPP PPPPPLP S
Sbjct: 669 PPMPPVSA-GPPLPPPPPPPPPLPPPSSAG--------------PPPPPPPPPLPNSPAP 713
Query: 117 DDWGGPATEPP 127
+ GGP PP
Sbjct: 714 PNPGGPPPAPP 724
Score = 37.7 bits (86), Expect = 0.019
Identities = 26/77 (33%), Positives = 30/77 (38%), Gaps = 13/77 (16%)
Query: 57 PPQAPLPMHGDPQPPGLAANNTLPALGAGGWAGWRGPREVVGREPPPVPPPPPLPPSSVE 116
PP A +P P P GL + + P P V PP PPPPP PP
Sbjct: 647 PPPASIPPP-PPLPSGLGSLSPAP------------PMPPVSAGPPLPPPPPPPPPLPPP 693
Query: 117 DDWGGPATEPPASLLSS 133
G P PP L +S
Sbjct: 694 SSAGPPPPPPPPPLPNS 710
Score = 31.6 bits (70), Expect = 1.4
Identities = 25/87 (28%), Positives = 25/87 (28%), Gaps = 21/87 (24%)
Query: 57 PPQAPLPMHGDPQPPGLAANNTLPALGAGGWAGWRGPREVVGREPPPVPPPPPLPPSSVE 116
PP PLP PP LP P PPP PPPP L P
Sbjct: 685 PPPPPLPPPSSAGPPPPPPPPPLP----------NSPAPPNPGGPPPAPPPPGLAP---- 730
Query: 117 DDWGGPATEPPASLLSSASSDDFCKEK 143
PP SS C K
Sbjct: 731 -------PPPPGLFFGLGSSSSQCPRK 750
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 42.7 bits (99), Expect = 6e-04
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 54 LRRPPQAPLPMHGDPQPPGLAANNTLPALGAGGWAGWRGPREVVGREPP-PVPPPPPLPP 112
LR P ++G PG + GG G + P ++PP P PPPP LPP
Sbjct: 76 LRAPAHKGAELNGSCMRPGTGNSQ-------GGGGGSQPPGLNSEQQPPQPPPPPPTLPP 128
Query: 113 SSVEDDWGG-PATEPPASLLSSASSDDFCKE 142
SS + GG PA +P +S+SS K+
Sbjct: 129 SSPTNPGGGVPAKKPKGGPNASSSSATISKQ 159
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 42.0 bits (97), Expect = 0.001
Identities = 29/77 (37%), Positives = 36/77 (46%), Gaps = 14/77 (18%)
Query: 60 APLPMHGDPQPPGLAANNTL-PALGAGGWAGWRGPREVVGREPPPVPPPPPLPPSSVEDD 118
A LPM PP A L P +GA + GR PPP PPPPP PP + D
Sbjct: 747 ADLPM----APPASAPPEFLDPLMGAAA-------PQYPGRGPPPAPPPPPPPPRAPADP 795
Query: 119 WGGPATEPPASLLSSAS 135
P +PP+++ S S
Sbjct: 796 AASP--DPPSAVASPGS 810
Score = 30.0 bits (66), Expect = 4.0
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 100 EPPPVPPPPPLPPSSVEDDWGGPA--TEPPASLLSS 133
E PP PPPPP PP W P + P LSS
Sbjct: 443 ERPPRPPPPPPPPRDGPFPWPWPPAHSAPRPGTLSS 478
>gi|110431370 espin [Homo sapiens]
Length = 854
Score = 41.2 bits (95), Expect = 0.002
Identities = 40/134 (29%), Positives = 58/134 (43%), Gaps = 33/134 (24%)
Query: 57 PPQAPLPMHGDPQPPGLAANNTLPALGAGGWAGWRGPREVVGREPPPVPPPPPLPPSSVE 116
PPQA L + G+ P G AA+ + RE+ PPP PPPPPLP ++
Sbjct: 570 PPQAAL-LPGNHVPNGCAADP-------------KASREL---PPPPPPPPPPLPEAA-- 610
Query: 117 DDWGGPATEPPASLLSSASSDDFCKEKTEDRYSLGSSLDSGMRTPLCRICFQGPEQGELL 176
++ PPA L S+ C ++ S GS+ M +P + ELL
Sbjct: 611 ------SSPPPAPPLPLESAGPGCGQRRSSS-STGSTKSFNMMSPT-------GDNSELL 656
Query: 177 SPCRCDGSVKCTHQ 190
+ + S+K T Q
Sbjct: 657 AEIKAGKSLKPTPQ 670
Score = 32.7 bits (73), Expect = 0.61
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 93 PREVVGREPPPVPP---PPPLPPSSVE---DDWGGPATEPPASLLSSASSDDFCKEKTED 146
PR +G+ PP PP PPP PP + G PA +PP + ++D + + K +
Sbjct: 421 PRGTIGKPTPPPPPPSFPPPPPPPGTQLPPPPPGYPAPKPP---VGPQAADIYMQTKNKL 477
Query: 147 RY 148
R+
Sbjct: 478 RH 479
>gi|38016943 calcium release-activated calcium channel protein 1
[Homo sapiens]
Length = 301
Score = 40.4 bits (93), Expect = 0.003
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 64 MHGDPQPPGLAANNTLPALGAGGWAGWRGPREVVGREPPPVPPPPPLPPSSVEDDWGGPA 123
MH +P PP ++ LP G +G R R G PP PPPP P + DW G +
Sbjct: 1 MHPEPAPPPSRSSPELPPSGGSTTSGSRRSRRRSGDGEPPGAPPPP-PSAVTYPDWIGQS 59
Query: 124 TEPPASL 130
SL
Sbjct: 60 YSEVMSL 66
>gi|160707881 formin 2 [Homo sapiens]
Length = 1722
Score = 40.4 bits (93), Expect = 0.003
Identities = 30/82 (36%), Positives = 34/82 (41%), Gaps = 20/82 (24%)
Query: 57 PPQAPLPMHGDPQPP-----GLAANNTLPALGAGGWAGWRGPREVVGREPPP------VP 105
PP PLP G P PP G+ LP +G P VG PPP +P
Sbjct: 1152 PPPPPLPGAGIPPPPPLPGAGIPPPPPLPGVGIPP----PPPLPGVGIPPPPPLPGAGIP 1207
Query: 106 PPPPLPPSSVEDDWGGPATEPP 127
PPPPLP + PA PP
Sbjct: 1208 PPPPLPGMGIP-----PAPAPP 1224
Score = 40.0 bits (92), Expect = 0.004
Identities = 27/67 (40%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 57 PPQAPLPMHGDPQPPGLAANNTLPALGAGGWAGWRGPREV--VGREPPP------VPPPP 108
PP PLP G P PP L P G AG P + VG PPP +PPPP
Sbjct: 1141 PPPPPLPRVGIPPPPPLPGAGIPPPPPLPG-AGIPPPPPLPGVGIPPPPPLPGVGIPPPP 1199
Query: 109 PLPPSSV 115
PLP + +
Sbjct: 1200 PLPGAGI 1206
Score = 39.7 bits (91), Expect = 0.005
Identities = 24/65 (36%), Positives = 27/65 (41%), Gaps = 16/65 (24%)
Query: 57 PPQAPLPMHGDPQPPGLAANNTLPALGAGGWAGWRGPREVVGREPPP------VPPPPPL 110
PP PLP G P PP L LP P G PPP +PPPPPL
Sbjct: 910 PPPPPLPGAGIPPPPPLPGAGILPL----------PPLPGAGIPPPPPLPGAAIPPPPPL 959
Query: 111 PPSSV 115
P + +
Sbjct: 960 PGAGI 964
Score = 39.7 bits (91), Expect = 0.005
Identities = 27/67 (40%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 57 PPQAPLPMHGDPQPPGLAANNTLPALGAGGWAGWRGPREV--VGREPPP------VPPPP 108
PP PLP G P PP L P G AG P + VG PPP +PPPP
Sbjct: 1064 PPPPPLPGAGIPPPPPLPGAGIPPPPPLPG-AGIPPPPPLPGVGIPPPPPLPGAGIPPPP 1122
Query: 109 PLPPSSV 115
PLP + +
Sbjct: 1123 PLPGAGI 1129
Score = 39.7 bits (91), Expect = 0.005
Identities = 27/67 (40%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 57 PPQAPLPMHGDPQPPGLAANNTLPALGAGGWAGWRGPREV--VGREPPP------VPPPP 108
PP PLP G P PP L P G AG P + VG PPP +PPPP
Sbjct: 1108 PPPPPLPGAGIPPPPPLPGAGIPPPPPLPG-AGIPPPPPLPRVGIPPPPPLPGAGIPPPP 1166
Query: 109 PLPPSSV 115
PLP + +
Sbjct: 1167 PLPGAGI 1173
Score = 38.1 bits (87), Expect = 0.015
Identities = 25/67 (37%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 57 PPQAPLPMHGDPQPPGLAANNTLPALGAGGWAGWRGPREVVGREPPP--------VPPPP 108
PP PLP G P PP L P G AG P + G PP +PPPP
Sbjct: 976 PPPPPLPGAGIPPPPPLPGAGIPPPPPLPG-AGIPPPPPLPGAGIPPPPPLPGAGIPPPP 1034
Query: 109 PLPPSSV 115
PLP + +
Sbjct: 1035 PLPGAGI 1041
Score = 38.1 bits (87), Expect = 0.015
Identities = 25/67 (37%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 57 PPQAPLPMHGDPQPPGLAANNTLPALGAGGWAGWRGPREVVGREPPP--------VPPPP 108
PP PLP G P PP L P G AG P + G PP +PPPP
Sbjct: 987 PPPPPLPGAGIPPPPPLPGAGIPPPPPLPG-AGIPPPPPLPGAGIPPPPPLPGAGIPPPP 1045
Query: 109 PLPPSSV 115
PLP + +
Sbjct: 1046 PLPGAGI 1052
Score = 38.1 bits (87), Expect = 0.015
Identities = 25/67 (37%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 57 PPQAPLPMHGDPQPPGLAANNTLPALGAGGWAGWRGPREVVGREPPP--------VPPPP 108
PP PLP G P PP L P G AG P + G PP +PPPP
Sbjct: 998 PPPPPLPGAGIPPPPPLPGAGIPPPPPLPG-AGIPPPPPLPGAGIPPPPPLPGAGIPPPP 1056
Query: 109 PLPPSSV 115
PLP + +
Sbjct: 1057 PLPGAGI 1063
Score = 38.1 bits (87), Expect = 0.015
Identities = 25/67 (37%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 57 PPQAPLPMHGDPQPPGLAANNTLPALGAGGWAGWRGPREVVGREPPP--------VPPPP 108
PP PLP G P PP L P G AG P + G PP +PPPP
Sbjct: 1009 PPPPPLPGAGIPPPPPLPGAGIPPPPPLPG-AGIPPPPPLPGAGIPPPPPLPGAGIPPPP 1067
Query: 109 PLPPSSV 115
PLP + +
Sbjct: 1068 PLPGAGI 1074
Score = 38.1 bits (87), Expect = 0.015
Identities = 25/67 (37%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 57 PPQAPLPMHGDPQPPGLAANNTLPALGAGGWAGWRGPREVVGREPPP--------VPPPP 108
PP PLP G P PP L P G AG P + G PP +PPPP
Sbjct: 1020 PPPPPLPGAGIPPPPPLPGAGIPPPPPLPG-AGIPPPPPLPGAGIPPPPPLPGAGIPPPP 1078
Query: 109 PLPPSSV 115
PLP + +
Sbjct: 1079 PLPGAGI 1085
Score = 38.1 bits (87), Expect = 0.015
Identities = 25/67 (37%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 57 PPQAPLPMHGDPQPPGLAANNTLPALGAGGWAGWRGPREVVGREPPP--------VPPPP 108
PP PLP G P PP L P G AG P + G PP +PPPP
Sbjct: 1031 PPPPPLPGAGIPPPPPLPGAGIPPPPPLPG-AGIPPPPPLPGAGIPPPPPLPGAGIPPPP 1089
Query: 109 PLPPSSV 115
PLP + +
Sbjct: 1090 PLPGAGI 1096
Score = 38.1 bits (87), Expect = 0.015
Identities = 25/67 (37%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 57 PPQAPLPMHGDPQPPGLAANNTLPALGAGGWAGWRGPREVVGREPPP--------VPPPP 108
PP PLP G P PP L P G AG P + G PP +PPPP
Sbjct: 1053 PPPPPLPGAGIPPPPPLPGAGIPPPPPLPG-AGIPPPPPLPGAGIPPPPPLPGVGIPPPP 1111
Query: 109 PLPPSSV 115
PLP + +
Sbjct: 1112 PLPGAGI 1118
Score = 37.7 bits (86), Expect = 0.019
Identities = 25/67 (37%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 57 PPQAPLPMHGDPQPPGLAANNTLPALGAGGWAGWRGPREVVGREPPP--------VPPPP 108
PP PLP G P PP L P G AG P + G PP +PPPP
Sbjct: 954 PPPPPLPGAGIPLPPPLPGAGIPPPPPLPG-AGIPPPPPLPGAGIPPPPPLPGAGIPPPP 1012
Query: 109 PLPPSSV 115
PLP + +
Sbjct: 1013 PLPGAGI 1019
Score = 37.4 bits (85), Expect = 0.025
Identities = 25/66 (37%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 57 PPQAPLPMHGDPQPPGL-AANNTLPALGAGGWAGWRGPREVVGREPPP------VPPPPP 109
PP PLP P PP L A LP G P G PPP +PPPPP
Sbjct: 943 PPPPPLPGAAIPPPPPLPGAGIPLPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPP 1002
Query: 110 LPPSSV 115
LP + +
Sbjct: 1003 LPGAGI 1008
Score = 37.4 bits (85), Expect = 0.025
Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 15/70 (21%)
Query: 57 PPQAPLPMHGDPQPP-----GLAANNTLPALGAGGWAGWRGPREVVGREPPP------VP 105
PP PLP G P PP G+ LP +G P G PPP +P
Sbjct: 1075 PPPPPLPGAGIPPPPPLPGAGIPPPPPLPGVGIPP----PPPLPGAGIPPPPPLPGAGIP 1130
Query: 106 PPPPLPPSSV 115
PPPPLP + +
Sbjct: 1131 PPPPLPGAGI 1140
Score = 36.2 bits (82), Expect = 0.055
Identities = 23/58 (39%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 57 PPQAPLPMHGDPQPPGLAANNTLPALGAGGWAGWRGPREVVGREPPPVPPPPPLPPSS 114
PP PLP G P PP L P G AG P + G PP P PP PP +
Sbjct: 1174 PPPPPLPGVGIPPPPPLPGVGIPPPPPLPG-AGIPPPPPLPGMGIPPAPAPPLPPPGT 1230
Score = 35.8 bits (81), Expect = 0.072
Identities = 26/67 (38%), Positives = 29/67 (43%), Gaps = 11/67 (16%)
Query: 58 PQAPLPMHGDPQPP---GLAANNTLPALGAGGWAGWRGPREVVGREPPP------VPPPP 108
P PLP G P PP G A P GAG P G PPP +PPPP
Sbjct: 933 PLPPLPGAGIPPPPPLPGAAIPPPPPLPGAG--IPLPPPLPGAGIPPPPPLPGAGIPPPP 990
Query: 109 PLPPSSV 115
PLP + +
Sbjct: 991 PLPGAGI 997
Score = 32.3 bits (72), Expect = 0.80
Identities = 23/60 (38%), Positives = 25/60 (41%), Gaps = 17/60 (28%)
Query: 57 PPQAPLPMHGDPQPPGLAANNTLPALGAGGWAGWRGPREVVGREPPP---VPPPPPLPPS 113
PP PLP G P PP LP +G P PPP +PPPP LP S
Sbjct: 1196 PPPPPLPGAGIPPPP------PLPGMGI--------PPAPAPPLPPPGTGIPPPPLLPVS 1241
>gi|85815829 SH3-domain binding protein 1 [Homo sapiens]
Length = 701
Score = 40.0 bits (92), Expect = 0.004
Identities = 33/97 (34%), Positives = 39/97 (40%), Gaps = 30/97 (30%)
Query: 55 RRPPQAPLPMHGDPQPPGLAANNTLPALGAGGWAGWRGPREVVGRE------PPPVPPPP 108
R P AP P PPG + T AL PR +VG PPP+PP P
Sbjct: 584 RSSPPAP------PLPPGSGSPGTPQAL----------PRRLVGSSLRAPTVPPPLPPTP 627
Query: 109 PLP--------PSSVEDDWGGPATEPPASLLSSASSD 137
P P P+S GPA+ P SL + A D
Sbjct: 628 PQPARRQSRRSPASPSPASPGPASPSPVSLSNPAQVD 664
Score = 29.3 bits (64), Expect = 6.8
Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 55 RRPPQAPLPMHGDPQPPG--LAANNTLPALGAGGWAGWRGPREVVGREPPPVPPPPPLPP 112
RR P +P P P P +N LGA G P + G PP PP P P
Sbjct: 636 RRSPASPSPASPGPASPSPVSLSNPAQVDLGAATAEG-GAPEAISGVPTPPAIPPQPRPR 694
Query: 113 S 113
S
Sbjct: 695 S 695
>gi|110611914 progesterone receptor [Homo sapiens]
Length = 933
Score = 39.7 bits (91), Expect = 0.005
Identities = 43/140 (30%), Positives = 55/140 (39%), Gaps = 29/140 (20%)
Query: 57 PPQAPLPMHGDPQPPGLAANNTLPALGAGGWAGWRGPRE--VVGREPP-----PVPPPPP 109
P P++ D QPP L G A R PR V G P P+ PPPP
Sbjct: 369 PKDDAYPLYSDFQPPALKIKEE----EEGAEASARSPRSYLVAGANPAAFPDFPLGPPPP 424
Query: 110 LPPSSVEDDWGGPA-TEPPASLLSSASSDDFCKEKTEDRYSLGSSLDSGMRTPLCRICFQ 168
LPP + G A T PAS S++S S GS+L+ L +
Sbjct: 425 LPPRATPSRPGEAAVTAAPASASVSSAS------------SSGSTLE----CILYKAEGA 468
Query: 169 GPEQGELL-SPCRCDGSVKC 187
P+QG PC+ G+ C
Sbjct: 469 PPQQGPFAPPPCKAPGASGC 488
>gi|11386183 WAS protein family, member 2 [Homo sapiens]
Length = 498
Score = 39.7 bits (91), Expect = 0.005
Identities = 30/80 (37%), Positives = 30/80 (37%), Gaps = 14/80 (17%)
Query: 57 PPQAP-LPMHGD------PQPPGLAANNTLPALGAGGWAGWRGPREVVGREPPPVPPPPP 109
PP P P H D P PP A TLP G P PPP PPPP
Sbjct: 349 PPSPPSFPPHPDFAAPPPPPPPPAADYPTLPPPPLSQPTGGAPP-------PPPPPPPPG 401
Query: 110 LPPSSVEDDWGGPATEPPAS 129
PP G PA PP S
Sbjct: 402 PPPPPFTGADGQPAIPPPLS 421
Score = 33.1 bits (74), Expect = 0.47
Identities = 22/71 (30%), Positives = 24/71 (33%), Gaps = 23/71 (32%)
Query: 57 PPQAPLPMHGDPQPPGLAANNTLPALGAGGWAGWRGPREVVGREPPPVPPPPPLPPSSVE 116
PP P PM G P PP P +G G P PPPP P
Sbjct: 322 PPPPPPPMIGIPPPP--------PPVGFGS---------------PGTPPPPSPPSFPPH 358
Query: 117 DDWGGPATEPP 127
D+ P PP
Sbjct: 359 PDFAAPPPPPP 369
Score = 32.7 bits (73), Expect = 0.61
Identities = 25/77 (32%), Positives = 29/77 (37%), Gaps = 12/77 (15%)
Query: 63 PMHGDPQPPGLAANNTLPALGAGGWAGWRGPREVVGREPPPVPPPPPLPPSSVEDDWGGP 122
P H P PP + P G+A P PPP PP +PP +G P
Sbjct: 297 PSHPPPAPPLGSPPGPKP-----GFAPPPAP-------PPPPPPMIGIPPPPPPVGFGSP 344
Query: 123 ATEPPASLLSSASSDDF 139
T PP S S DF
Sbjct: 345 GTPPPPSPPSFPPHPDF 361
>gi|42544125 splicing factor 1 isoform 2 [Homo sapiens]
Length = 638
Score = 39.7 bits (91), Expect = 0.005
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 20/115 (17%)
Query: 56 RPPQAPLPMHGDPQPPGLAANNTLPA------LGAGGWAGWRG----PREVVGREPPPVP 105
+PP P PM+ P PPG + +G+G + +G P +G PPP P
Sbjct: 426 QPP--PPPMNQGPHPPGHHGPPPMDQYLGSTPVGSGVYRLHQGKGMMPPPPMGMMPPPPP 483
Query: 106 PP---PPLPPSSVEDDWGG-----PATEPPASLLSSASSDDFCKEKTEDRYSLGS 152
PP PP PPS W P PP+S ++S++ + + T S G+
Sbjct: 484 PPSGQPPPPPSGPLPPWQQQQQQPPPPPPPSSSMASSTPLPWQQNTTTTTTSAGT 538
>gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]
Length = 639
Score = 39.7 bits (91), Expect = 0.005
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 20/115 (17%)
Query: 56 RPPQAPLPMHGDPQPPGLAANNTLPA------LGAGGWAGWRG----PREVVGREPPPVP 105
+PP P PM+ P PPG + +G+G + +G P +G PPP P
Sbjct: 426 QPP--PPPMNQGPHPPGHHGPPPMDQYLGSTPVGSGVYRLHQGKGMMPPPPMGMMPPPPP 483
Query: 106 PP---PPLPPSSVEDDWGG-----PATEPPASLLSSASSDDFCKEKTEDRYSLGS 152
PP PP PPS W P PP+S ++S++ + + T S G+
Sbjct: 484 PPSGQPPPPPSGPLPPWQQQQQQPPPPPPPSSSMASSTPLPWQQNTTTTTTSAGT 538
Score = 32.7 bits (73), Expect = 0.61
Identities = 25/73 (34%), Positives = 28/73 (38%), Gaps = 13/73 (17%)
Query: 57 PPQAPLPMHGDPQ-PPGLAANNTLPALGAGGWAGWRGPREVVGREPPPVPPPPPLPPSSV 115
P PLP P PPG P G+ G PP PPPPP+ PS+
Sbjct: 564 PTMVPLPPGVQPPLPPGAPPPPPPPPPGSAGMM-----------YAPPPPPPPPMDPSNF 612
Query: 116 EDDWG-GPATEPP 127
G G A PP
Sbjct: 613 VTMMGMGVAGMPP 625
Score = 30.8 bits (68), Expect = 2.3
Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 22/65 (33%)
Query: 57 PPQAPLPMHGD---------PQPPGLAANNTLPALGAGGWAGWRGPREVVGREP---PPV 104
PP P P G P PP + +N + +G G V G P PP
Sbjct: 582 PPPPPPPPPGSAGMMYAPPPPPPPPMDPSNFVTMMGMG----------VAGMPPFGMPPA 631
Query: 105 PPPPP 109
PPPPP
Sbjct: 632 PPPPP 636
Score = 30.0 bits (66), Expect = 4.0
Identities = 28/114 (24%), Positives = 36/114 (31%), Gaps = 43/114 (37%)
Query: 57 PPQAPLP----MHGDPQPP-----GLAANNTLP----------ALGAGGWAGWRGPREVV 97
PP PLP P PP +A++ LP + G G W+ +
Sbjct: 492 PPSGPLPPWQQQQQQPPPPPPPSSSMASSTPLPWQQNTTTTTTSAGTGSIPPWQQQQAAA 551
Query: 98 GREP-------------------PPVPP-----PPPLPPSSVEDDWGGPATEPP 127
P PP+PP PPP PP S + P PP
Sbjct: 552 AASPGAPQMQGNPTMVPLPPGVQPPLPPGAPPPPPPPPPGSAGMMYAPPPPPPP 605
>gi|206597502 NESH protein isoform 2 [Homo sapiens]
Length = 360
Score = 39.7 bits (91), Expect = 0.005
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 54 LRRPPQAPLPMHGDPQPPGL--AANNTLPALGAGGWAGWRGPREVVGREPPPVPP----- 106
L RPP+ P P+H P G AA++ AG G G G+ PP PP
Sbjct: 176 LGRPPRIPEPVHLPVVPDGRLSAASSASSLASAGSAEGVGGAPTPKGQAAPPAPPLPSSL 235
Query: 107 PPPLPPSSVE 116
PP PP++VE
Sbjct: 236 DPPPPPAAVE 245
Score = 29.6 bits (65), Expect = 5.2
Identities = 24/80 (30%), Positives = 29/80 (36%), Gaps = 26/80 (32%)
Query: 57 PPQAPLPMHGDPQPPGLAANNTLPALGAGGWAGWRGPREVVGREPPP----------VPP 106
PP PLP DP PP A ++ P + PPP +PP
Sbjct: 226 PPAPPLPSSLDPPPPPAAVE------------VFQRPPTLEELSPPPPDEELPLPLDLPP 273
Query: 107 PPPLPPSSVEDDWGGPATEP 126
PPPL D+ G P P
Sbjct: 274 PPPLD----GDELGLPPPPP 289
>gi|7705981 NESH protein isoform 1 [Homo sapiens]
Length = 366
Score = 39.7 bits (91), Expect = 0.005
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 54 LRRPPQAPLPMHGDPQPPGL--AANNTLPALGAGGWAGWRGPREVVGREPPPVPP----- 106
L RPP+ P P+H P G AA++ AG G G G+ PP PP
Sbjct: 182 LGRPPRIPEPVHLPVVPDGRLSAASSASSLASAGSAEGVGGAPTPKGQAAPPAPPLPSSL 241
Query: 107 PPPLPPSSVE 116
PP PP++VE
Sbjct: 242 DPPPPPAAVE 251
Score = 29.6 bits (65), Expect = 5.2
Identities = 24/80 (30%), Positives = 29/80 (36%), Gaps = 26/80 (32%)
Query: 57 PPQAPLPMHGDPQPPGLAANNTLPALGAGGWAGWRGPREVVGREPPP----------VPP 106
PP PLP DP PP A ++ P + PPP +PP
Sbjct: 232 PPAPPLPSSLDPPPPPAAVE------------VFQRPPTLEELSPPPPDEELPLPLDLPP 279
Query: 107 PPPLPPSSVEDDWGGPATEP 126
PPPL D+ G P P
Sbjct: 280 PPPLD----GDELGLPPPPP 295
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.473
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,955,522
Number of Sequences: 37866
Number of extensions: 1376155
Number of successful extensions: 19243
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 562
Number of HSP's that attempted gapping in prelim test: 11920
Number of HSP's gapped (non-prelim): 5000
length of query: 410
length of database: 18,247,518
effective HSP length: 105
effective length of query: 305
effective length of database: 14,271,588
effective search space: 4352834340
effective search space used: 4352834340
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.