Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 57863269
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|57863269 ribosomal RNA processing 1 homolog B [Homo sapiens]
(758 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|57863269 ribosomal RNA processing 1 homolog B [Homo sapiens] 1512 0.0
gi|4503247 ribosomal RNA processing 1 homolog [Homo sapiens] 391 e-108
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 51 5e-06
gi|19924099 synapsin I isoform Ia [Homo sapiens] 50 6e-06
gi|19924097 synapsin I isoform Ib [Homo sapiens] 50 6e-06
gi|4759208 TAO kinase 2 isoform 1 [Homo sapiens] 45 2e-04
gi|49472835 bridging integrator 2 [Homo sapiens] 45 3e-04
gi|6912246 CD3E antigen, epsilon polypeptide associated protein ... 44 4e-04
gi|33457316 pleckstrin homology domain containing, family O memb... 43 0.001
gi|122937223 NOBOX oogenesis homeobox [Homo sapiens] 42 0.002
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 42 0.002
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 42 0.002
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 42 0.002
gi|50962882 G patch domain containing 8 [Homo sapiens] 42 0.002
gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B ... 42 0.003
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens] 42 0.003
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 41 0.004
gi|21396500 HIRA interacting protein 3 [Homo sapiens] 41 0.005
gi|50428935 BPY2 interacting protein 1 [Homo sapiens] 41 0.005
gi|163965366 nascent polypeptide-associated complex alpha subuni... 41 0.005
gi|98991767 mitogen-activated protein kinase kinase kinase 7 int... 40 0.006
gi|157674363 protein phosphatase 1, regulatory subunit 15A [Homo... 40 0.008
gi|27262645 ataxin 2 related protein isoform B [Homo sapiens] 40 0.008
gi|27262653 ataxin 2 related protein isoform E [Homo sapiens] 40 0.008
gi|27262649 ataxin 2 related protein isoform C [Homo sapiens] 40 0.008
gi|27262647 ataxin 2 related protein isoform A [Homo sapiens] 40 0.008
gi|27262651 ataxin 2 related protein isoform D [Homo sapiens] 40 0.008
gi|221316599 chromogranin B precursor [Homo sapiens] 40 0.010
gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens] 40 0.010
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 40 0.010
>gi|57863269 ribosomal RNA processing 1 homolog B [Homo sapiens]
Length = 758
Score = 1512 bits (3915), Expect = 0.0
Identities = 758/758 (100%), Positives = 758/758 (100%)
Query: 1 MAPAMQPAEIQFAQRLASSEKGIRDRAVKKLRQYISVKTQRETGGFSQEELLKIWKGLFY 60
MAPAMQPAEIQFAQRLASSEKGIRDRAVKKLRQYISVKTQRETGGFSQEELLKIWKGLFY
Sbjct: 1 MAPAMQPAEIQFAQRLASSEKGIRDRAVKKLRQYISVKTQRETGGFSQEELLKIWKGLFY 60
Query: 61 CMWVQDEPLLQEELANTIAQLVHAVNNSAAQHLFIQTFWQTMNREWKGIDRLRLDKYYML 120
CMWVQDEPLLQEELANTIAQLVHAVNNSAAQHLFIQTFWQTMNREWKGIDRLRLDKYYML
Sbjct: 61 CMWVQDEPLLQEELANTIAQLVHAVNNSAAQHLFIQTFWQTMNREWKGIDRLRLDKYYML 120
Query: 121 IRLVLRQSFEVLKRNGWEESRIKVFLDVLMKEVLCPESQSPNGVRFHFIDIYLDELSKVG 180
IRLVLRQSFEVLKRNGWEESRIKVFLDVLMKEVLCPESQSPNGVRFHFIDIYLDELSKVG
Sbjct: 121 IRLVLRQSFEVLKRNGWEESRIKVFLDVLMKEVLCPESQSPNGVRFHFIDIYLDELSKVG 180
Query: 181 GKELLADQNLKFIDPFCKIAAKTKDHTLVQTIARGVFEAIVDQSPFVPEETMEEQKTKVG 240
GKELLADQNLKFIDPFCKIAAKTKDHTLVQTIARGVFEAIVDQSPFVPEETMEEQKTKVG
Sbjct: 181 GKELLADQNLKFIDPFCKIAAKTKDHTLVQTIARGVFEAIVDQSPFVPEETMEEQKTKVG 240
Query: 241 DGDLSAEEIPENEVSLRRAVSKKKTALGKNHSRKDGLSDERGRDDCGTFEDTGPLLQFDY 300
DGDLSAEEIPENEVSLRRAVSKKKTALGKNHSRKDGLSDERGRDDCGTFEDTGPLLQFDY
Sbjct: 241 DGDLSAEEIPENEVSLRRAVSKKKTALGKNHSRKDGLSDERGRDDCGTFEDTGPLLQFDY 300
Query: 301 KAVADRLLEMTSRKNTPHFNRKRLSKLIKKFQDLSEGSSISQLSFAEDISADEDDQILSQ 360
KAVADRLLEMTSRKNTPHFNRKRLSKLIKKFQDLSEGSSISQLSFAEDISADEDDQILSQ
Sbjct: 301 KAVADRLLEMTSRKNTPHFNRKRLSKLIKKFQDLSEGSSISQLSFAEDISADEDDQILSQ 360
Query: 361 GKHKKKGNKLLEKTNLEKEKGSRVFCVEEEDSESSLQKRRRKKKKKHHLQPENPGPGGAA 420
GKHKKKGNKLLEKTNLEKEKGSRVFCVEEEDSESSLQKRRRKKKKKHHLQPENPGPGGAA
Sbjct: 361 GKHKKKGNKLLEKTNLEKEKGSRVFCVEEEDSESSLQKRRRKKKKKHHLQPENPGPGGAA 420
Query: 421 PSLEQNRGREPEASGLKALKARVAEPGAEATSSTGEESGSEHPPAVPMHNKRKRPRKKSP 480
PSLEQNRGREPEASGLKALKARVAEPGAEATSSTGEESGSEHPPAVPMHNKRKRPRKKSP
Sbjct: 421 PSLEQNRGREPEASGLKALKARVAEPGAEATSSTGEESGSEHPPAVPMHNKRKRPRKKSP 480
Query: 481 RAHREMLESAVLPPEDMSQSGPSGSHPQGPRGSPTGGAQLLKRKRKLGVVPVNGSGLSTP 540
RAHREMLESAVLPPEDMSQSGPSGSHPQGPRGSPTGGAQLLKRKRKLGVVPVNGSGLSTP
Sbjct: 481 RAHREMLESAVLPPEDMSQSGPSGSHPQGPRGSPTGGAQLLKRKRKLGVVPVNGSGLSTP 540
Query: 541 AWPPLQQEGPPTGPAEGANSHTTLPQRRRLQKKKAGPGSLELCGLPSQKTASLKKRKKMR 600
AWPPLQQEGPPTGPAEGANSHTTLPQRRRLQKKKAGPGSLELCGLPSQKTASLKKRKKMR
Sbjct: 541 AWPPLQQEGPPTGPAEGANSHTTLPQRRRLQKKKAGPGSLELCGLPSQKTASLKKRKKMR 600
Query: 601 VMSNLVEHNGVLESEAGQPQALGSSGTCSSLKKQKLRAESDFVKFDTPFLPKPLFFRRAK 660
VMSNLVEHNGVLESEAGQPQALGSSGTCSSLKKQKLRAESDFVKFDTPFLPKPLFFRRAK
Sbjct: 601 VMSNLVEHNGVLESEAGQPQALGSSGTCSSLKKQKLRAESDFVKFDTPFLPKPLFFRRAK 660
Query: 661 SSTATHPPGPAVQLNKTPSSSKKVTFGLNRNMTAEFKKTDKSILVSPTGPSRVAFDPEQK 720
SSTATHPPGPAVQLNKTPSSSKKVTFGLNRNMTAEFKKTDKSILVSPTGPSRVAFDPEQK
Sbjct: 661 SSTATHPPGPAVQLNKTPSSSKKVTFGLNRNMTAEFKKTDKSILVSPTGPSRVAFDPEQK 720
Query: 721 PLHGVLKTPTSSPASSPLVAKKPLTTTPRRRPRAMDFF 758
PLHGVLKTPTSSPASSPLVAKKPLTTTPRRRPRAMDFF
Sbjct: 721 PLHGVLKTPTSSPASSPLVAKKPLTTTPRRRPRAMDFF 758
>gi|4503247 ribosomal RNA processing 1 homolog [Homo sapiens]
Length = 461
Score = 391 bits (1004), Expect = e-108
Identities = 215/471 (45%), Positives = 298/471 (63%), Gaps = 22/471 (4%)
Query: 7 PAEIQFAQRLASSEKGIRDRAVKKLRQYISVKTQRETGGFSQEELLKIWKGLFYCMWVQD 66
P EIQ AQRLA +E+ RDRAV+KLR+YI +TQR GGF+ +ELLK+WKGLFYCMW+QD
Sbjct: 8 PPEIQLAQRLAGNEQVTRDRAVRKLRKYIVARTQRAAGGFTHDELLKVWKGLFYCMWMQD 67
Query: 67 EPLLQEELANTIAQLVHAVNNSAAQHLFIQTFWQTMNREWKGIDRLRLDKYYMLIRLVLR 126
+PLLQEEL TI+QLVHA + AQHLF+Q FWQTMNREW GIDRLRLDK+YML+R+VL
Sbjct: 68 KPLLQEELGRTISQLVHAFQTTEAQHLFLQAFWQTMNREWTGIDRLRLDKFYMLMRMVLN 127
Query: 127 QSFEVLKRNGWEESRIKVFLDVLMKEVLCPESQSPNGVRFHFIDIYLDELSKVGGKELLA 186
+S +VLK GWEE +I+ L++LM E+L P SQ+PNGV+ HFI+I+L+EL+KVG +EL A
Sbjct: 128 ESLKVLKMQGWEERQIEELLELLMTEILHPSSQAPNGVKSHFIEIFLEELTKVGAEELTA 187
Query: 187 DQNLKFIDPFCKIAAKTKDHTLVQTIARGVFEAIVDQSPFVPEETMEEQKTKVGDGDLSA 246
DQNLKFIDPFC+IAA+TKD ++ I RG+FE IV+Q+P E+ + E T+ D ++++
Sbjct: 188 DQNLKFIDPFCRIAARTKDSLVLNNITRGIFETIVEQAPLAIEDLLNELDTQ--DEEVAS 245
Query: 247 EEIPENEVSLRRAVSKKKTALGKNHSRKDGLSDERGRDDCGTFEDT-GPLLQFDYKAVAD 305
+ +E R +K + E G + G D+ GP+LQFDY+AVA+
Sbjct: 246 DSDESSEGGERGDALSQKRSEKPPAGSICRAEPEAGEEQAGDDRDSGGPVLQFDYEAVAN 305
Query: 306 RLLEMTSRKNTPHFNRKRLSKLIKKFQDLSEGSSISQLSFAEDISADEDDQILSQGKHKK 365
RL EM SR++TP NRKRL K+I+K QDL+ G F ED ++ + L +G+ +K
Sbjct: 306 RLFEMASRQSTPSQNRKRLYKVIRKLQDLAGG------IFPEDEIPEKACRRLLEGRRQK 359
Query: 366 KGNKLLEKTNLEKEKGSRVFCVEEEDSESSLQKRRRKKKKKHHLQPENPGPGGAAPSLEQ 425
K K L++E+G E++ S +R+R +++ PE G P +
Sbjct: 360 KTKKQKRLLRLQQERGK-----GEKEPPSPGMERKRSRRRGVGADPEARAEAGEQPGTAE 414
Query: 426 NR--GREPEASGLKALKARVAEPGAEATSSTGEESGSEHPPAVPMHNKRKR 474
+P G + + R P TS+ + + + P K+KR
Sbjct: 415 RALLRDQPRGRGQRGARQRRRTP-RPLTSARAKAANVQEP-----EKKKKR 459
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 50.8 bits (120), Expect = 5e-06
Identities = 91/469 (19%), Positives = 150/469 (31%), Gaps = 54/469 (11%)
Query: 313 RKNTPHFNRKRLSKLIKKFQDLSEGSSISQLSFAEDISADEDDQILSQGKHKKKGNKLLE 372
++ TP + Q+ + S I ++ E I ++ K +K+ K
Sbjct: 217 KEKTPELPEPSVKVKEPSVQEATSTSDILKVPKPEPIPEPKEPSPEKNSKKEKEKEKTRP 276
Query: 373 KTNLEKEKGSRVFCVEEEDSESSLQKRRRKKKKKHHLQPEN-------PGPGGAAPSLEQ 425
++ + SR S S + RRR + + P P P P
Sbjct: 277 RSRSRSKSRSRT----RSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRM 332
Query: 426 NRGREPEASGLKALKARVAEPGAEATSSTGEESGSEHPPAVPMHNKRKRPRKKSPRAHRE 485
S + R + +SS+ S S PP P PRK
Sbjct: 333 PPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKT------R 386
Query: 486 MLESAVLPPEDMSQSGPSGSHPQGPRGSPTGGAQLLKRKRKLGVVPVNGSGLSTPAWPPL 545
L + PP + P + P R SPT RK ++ V P SG T
Sbjct: 387 RLSPSASPPRRRHRPSPPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGKVTKHKGTE 446
Query: 546 QQEGPPTGPA------------EGANSHTTLPQRRRLQKKKAGPGSLELCGLPSQKTASL 593
++E P P +G ++R Q ++ S G S
Sbjct: 447 KRESPSPAPKPRKVELSESEEDKGGKMAAADSVQQRRQYRRQNQQSSSDSGSSSSSEDER 506
Query: 594 KKRKKMRVMSNLVEHNGVLESEAGQPQALGSSGTCSSLKKQKLRAESDFVKFDTPFLPKP 653
KR ++ NG E G+ + S + S +++ + S + P P
Sbjct: 507 PKRSHVK--------NG----EVGRRRRHSPSRSASPSPRKRQKETSPRGRRRRSPSPPP 554
Query: 654 LFFRRAKS--------STATHPP---GPAVQLNKTPSSSKKVTFGLNRNMTAEFKKTDKS 702
RR+ S T T PP P+ + S ++ + + R + K
Sbjct: 555 TRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSP--SPPPKR 612
Query: 703 ILVSPTGPSRVAFDPEQKPLHGVLKTPTSSPASSPLVAKKPLTTTPRRR 751
SP P + P P V +P SSP+ ++ + + + R
Sbjct: 613 RTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHR 661
Score = 33.1 bits (74), Expect = 0.98
Identities = 61/319 (19%), Positives = 97/319 (30%), Gaps = 73/319 (22%)
Query: 369 KLLEKTNLEKEKGSRVFCVEEEDSESSLQKRRRKKKKKHHLQPENPGPGGAAPSLEQNRG 428
KL +++K R ++E+ ESS +KR R + + + +P P + + + R
Sbjct: 140 KLASMKKQDEDKDKR----DKEEKESSREKRERSRSPRRR-KSRSPSPRRRSSPVRRERK 194
Query: 429 REPEASGLKALKARVA-------------------------------------------- 444
R S K+R
Sbjct: 195 RSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVKVKEPSVQEATSTSDILKVPKPEPIP 254
Query: 445 ---EPGAEATSSTGEESGSEHPPAVPMHNKRKRPRKKSP------RAHREMLESAVLPPE 495
EP E S +E P + R R R +SP R HR S
Sbjct: 255 EPKEPSPEKNSKKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRR 314
Query: 496 DMSQSGPSGSHPQGPRGSPT----GGAQLLKRKRKLGVVPVNGSGLST--------PAWP 543
+ PS PR P ++ R+R+ ++GS S+ P P
Sbjct: 315 PSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKP 374
Query: 544 PLQQEGPPTGPAEGANSHTTLPQRRRLQKKKAGPGSLELCGLPSQKTASLKKRKKM---R 600
P + PP + S + +R R P P Q + K R + R
Sbjct: 375 PKRTSSPPRKTRRLSPSASPPRRRHRPSPPATPPPKTRHSPTPQQSNRTRKSRVSVSPGR 434
Query: 601 VMSNLVEHNGVLESEAGQP 619
+ +H G + E+ P
Sbjct: 435 TSGKVTKHKGTEKRESPSP 453
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 50.4 bits (119), Expect = 6e-06
Identities = 44/157 (28%), Positives = 59/157 (37%), Gaps = 32/157 (20%)
Query: 411 PENPGPGGAAPSLEQNRGREPEASGLKALKARVAEPGAEATSSTGEESGSEHPPAVPMHN 470
P+ P A P+ Q R P A G PGA + PPA P
Sbjct: 515 PQQPASQAAPPTQGQGRQSRPVAGG----------PGAPPAA---------RPPASPSPQ 555
Query: 471 KRKRPRKKSPRAHREMLESAVLPPEDMSQSGPSGSHPQGPRGSPTGGAQLLKRKRKLGVV 530
++ P P+A R+ S PP+ S + P G QGP P G A ++ + G V
Sbjct: 556 RQAGP----PQATRQTSVSGPAPPK-ASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPV 610
Query: 531 PVNGSGLSTPAWPPLQQEGPPTGPAEGANSHTTLPQR 567
P G PP Q+ P+GP L Q+
Sbjct: 611 PRTG--------PPTTQQPRPSGPGPAGRPKPQLAQK 639
Score = 32.0 bits (71), Expect = 2.2
Identities = 34/110 (30%), Positives = 43/110 (39%), Gaps = 25/110 (22%)
Query: 492 LPPEDMSQSGPS-GSHPQGPRGSPTGGAQLLKRKRKLGVVPVNGSGLSTPAWPPLQQEGP 550
LP + + P GSH Q P SP G +P+ PA PP QQ P
Sbjct: 418 LPRQRQRDASPGRGSHGQTP--SP-------------GALPLGRQTSQQPAGPPAQQRPP 462
Query: 551 PTG--PAEGANSHTTLPQRR--RLQKKKAGPGSLELCGLPSQKTASLKKR 596
P G P G PQR+ LQ++ G L GL + L +R
Sbjct: 463 PQGGPPQPGPG-----PQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQR 507
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 50.4 bits (119), Expect = 6e-06
Identities = 44/157 (28%), Positives = 59/157 (37%), Gaps = 32/157 (20%)
Query: 411 PENPGPGGAAPSLEQNRGREPEASGLKALKARVAEPGAEATSSTGEESGSEHPPAVPMHN 470
P+ P A P+ Q R P A G PGA + PPA P
Sbjct: 515 PQQPASQAAPPTQGQGRQSRPVAGG----------PGAPPAA---------RPPASPSPQ 555
Query: 471 KRKRPRKKSPRAHREMLESAVLPPEDMSQSGPSGSHPQGPRGSPTGGAQLLKRKRKLGVV 530
++ P P+A R+ S PP+ S + P G QGP P G A ++ + G V
Sbjct: 556 RQAGP----PQATRQTSVSGPAPPK-ASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPV 610
Query: 531 PVNGSGLSTPAWPPLQQEGPPTGPAEGANSHTTLPQR 567
P G PP Q+ P+GP L Q+
Sbjct: 611 PRTG--------PPTTQQPRPSGPGPAGRPKPQLAQK 639
Score = 32.0 bits (71), Expect = 2.2
Identities = 34/110 (30%), Positives = 43/110 (39%), Gaps = 25/110 (22%)
Query: 492 LPPEDMSQSGPS-GSHPQGPRGSPTGGAQLLKRKRKLGVVPVNGSGLSTPAWPPLQQEGP 550
LP + + P GSH Q P SP G +P+ PA PP QQ P
Sbjct: 418 LPRQRQRDASPGRGSHGQTP--SP-------------GALPLGRQTSQQPAGPPAQQRPP 462
Query: 551 PTG--PAEGANSHTTLPQRR--RLQKKKAGPGSLELCGLPSQKTASLKKR 596
P G P G PQR+ LQ++ G L GL + L +R
Sbjct: 463 PQGGPPQPGPG-----PQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQR 507
>gi|4759208 TAO kinase 2 isoform 1 [Homo sapiens]
Length = 1049
Score = 45.1 bits (105), Expect = 2e-04
Identities = 64/294 (21%), Positives = 112/294 (38%), Gaps = 32/294 (10%)
Query: 289 FEDTGPLLQFDYKAVADRLLEMTSRKNTPHFNRKRLSKLIKKFQDLSE--GSSISQLSFA 346
F++T + YKA+ LLE T + ++ + +K L+E SIS++ +
Sbjct: 754 FQETCKIQTRQYKALRAHLLETTPKAQHKSLLKRLKEEQTRKLAILAEQYDQSISEMLSS 813
Query: 347 EDISADEDDQILSQGKHKKKG----------NKLLEKTNLEKEKGSRVFCVEEEDSESSL 396
+ + DE + Q ++ +K+ +T + E+ R E + +L
Sbjct: 814 QALRLDETQEAEFQALRQQLQQELELLNAYQSKIKIRTESQHERELR-----ELEQRVAL 868
Query: 397 QKRRRKKKKKHHLQPENPGPGGAAPSLEQNRGREPEASGLKALKARVAEPGAEATSSTGE 456
++ +++ + L G SL + + RE EA ++++ + +
Sbjct: 869 RRALLEQRVEEELLALQTGRSERIRSLLERQAREIEAFDAESMRLGFSSMALGGIPAEAA 928
Query: 457 ESGSEHPPAVPMHNKRKRPRKKSPRAHRE----MLESAVLPPEDMSQSG-PSGSHPQGPR 511
G PP P R PR + +H M A P ++ G P+ P
Sbjct: 929 AQGYPAPPPAPAWPSRPVPRSGAHWSHGPPPPGMPPPAWRQPSLLAPPGPPNWLGPPTQS 988
Query: 512 GSPTGGAQLLKRK--RKLGVVPVNGSGLSTPAWPPLQQEGPPTGPAEGANSHTT 563
G+P GGA LL R + L GSG + GPP G S +T
Sbjct: 989 GTPRGGALLLLRNSPQPLRRAASGGSG--------SENVGPPAAAVPGPLSRST 1034
>gi|49472835 bridging integrator 2 [Homo sapiens]
Length = 565
Score = 44.7 bits (104), Expect = 3e-04
Identities = 51/188 (27%), Positives = 78/188 (41%), Gaps = 30/188 (15%)
Query: 338 SSISQLSFAEDISADED-DQILSQGKHKKKGNKLLEKTNLEKEKGSRVFCVEEED----- 391
S++S S +E +SA ED +QG+ + +LLE+ +EKE GS EE++
Sbjct: 282 STLSLKSESESVSATEDLAPDAAQGEDNSEIKELLEEEEIEKE-GSEASSSEEDEPLPAC 340
Query: 392 -----SESSLQKRRRKKKKKHHLQPENPGPGGA-APSLEQNRGREPEASGLKALKARVAE 445
++ S R K +++ P PGGA +PS G+ ++ L+ R A
Sbjct: 341 NGPAQAQPSPTTERAKSQEEVLPSSTTPSPGGALSPS-----GQPSSSATEVVLRTRTAS 395
Query: 446 PGAEATSSTGEESGSEHPPAVPMHNKRKRPRKKSPRAHREMLESAVLPPEDMSQSGPSGS 505
G+E + PP+ R PRA S+ P + SG G
Sbjct: 396 EGSEQPKKRASIQRTSAPPS----------RPPPPRATASPRPSSGNIPSSPTASG--GG 443
Query: 506 HPQGPRGS 513
P PR S
Sbjct: 444 SPTSPRAS 451
>gi|6912246 CD3E antigen, epsilon polypeptide associated protein
[Homo sapiens]
Length = 510
Score = 44.3 bits (103), Expect = 4e-04
Identities = 71/308 (23%), Positives = 112/308 (36%), Gaps = 40/308 (12%)
Query: 357 ILSQGKHKKKGNKLLEKTNLEKEKGSRVFCVEEEDSESSLQKRRRKKKKKHHL-QPENPG 415
+L+ GK KK+ E G V+ + R++KKKK L +PE G
Sbjct: 169 LLTSGKKKKEMQVTEAPVTQEAVNGHGALEVDMALGSPEMDVRKKKKKKNQQLKEPEAAG 228
Query: 416 PGGAAPSLEQNRGREPEASGL---KALKARVAEPGAEATSSTGEESGSEHPPAVPMHNKR 472
P G P++E E G+ K R G E + E P+ +
Sbjct: 229 PVGTEPTVE-----TLEPLGVLFPSTTKKRKKPKGKETFEPEDKTVKQEQINTEPLEDTV 283
Query: 473 KRPRKKSPRAHREMLESAVLPPEDMS-QSGPSGSHPQGPRGSPTGGAQLLKRKRKLGVVP 531
P KK R+ + P E ++ +S P P + KRK++ G +
Sbjct: 284 LSPTKK---RKRQKGTEGMEPEEGVTVESQPQVKVEPLEEAIPLPPTK--KRKKEKGQMA 338
Query: 532 VNGSGLST-----PAWPPLQQEG------PPTGPAEGANSHTTLPQRRRLQKKK------ 574
+ G P PL+ G P G A + P+++ ++K+
Sbjct: 339 MMEPGTEAMEPVEPEMKPLESPGGTMAPQQPEGAKPQAQAALAAPKKKTKKEKQQDATVE 398
Query: 575 -----AGPGSLELCGLPSQKTASLKKRKKMRVMSNLVEHNGVLESE---AGQPQALGSSG 626
GP + + T++ KK+KK + E LE E GQP+A + G
Sbjct: 399 PETEVVGPELPDDLEPQAAPTSTKKKKKKKERGHTVTEPIQPLEPELPGEGQPEARATPG 458
Query: 627 TCSSLKKQ 634
+ KKQ
Sbjct: 459 STKKRKKQ 466
Score = 39.7 bits (91), Expect = 0.010
Identities = 68/322 (21%), Positives = 126/322 (39%), Gaps = 41/322 (12%)
Query: 308 LEMTSRKNTPHFNRKRLSKLIKKFQDLSEGSSISQLSFAEDISADEDDQIL----SQGKH 363
LE+ +P + ++ K KK Q L E + + + E +L ++ +
Sbjct: 197 LEVDMALGSPEMDVRKKKK--KKNQQLKEPEAAGPVGTEPTVETLEPLGVLFPSTTKKRK 254
Query: 364 KKKGNKLLEKTNLEKEKGSRVFCVEEEDSESSLQKRRRKKKKKHHLQPENPGPGGAAPSL 423
K KG + E + + K ++ ED+ S K+R+++K ++PE + P +
Sbjct: 255 KPKGKETFEPED-KTVKQEQINTEPLEDTVLSPTKKRKRQKGTEGMEPEEGVTVESQPQV 313
Query: 424 EQNRGRE----PEASGLKALKARVA--EPGAEATSSTGEESGSEHPPA---VPMHNKRKR 474
+ E P K K ++A EPG EA E P P + +
Sbjct: 314 KVEPLEEAIPLPPTKKRKKEKGQMAMMEPGTEAMEPVEPEMKPLESPGGTMAPQQPEGAK 373
Query: 475 PRKKS------PRAHREMLESAVLPPEDMSQSGPSGSHPQGPRGSPTGGAQLLKRKRKLG 528
P+ ++ + +E + A + PE GP P+ +PT + K+K +
Sbjct: 374 PQAQAALAAPKKKTKKEKQQDATVEPE-TEVVGPELPDDLEPQAAPTSTKKKKKKKER-- 430
Query: 529 VVPVNGSGLSTPAWPPLQQEGPPTGPAEGANSHTTLPQRRRLQKKKAGPGSL---ELCGL 585
G ++ P PL+ E P G E + + +R++ ++ P ++ E+ G
Sbjct: 431 -----GHTVTEPI-QPLEPELPGEGQPEARATPGSTKKRKKQSQESRMPETVPQEEMPGP 484
Query: 586 P-------SQKTASLKKRKKMR 600
P T KKRK+ +
Sbjct: 485 PLNSESGEEAPTGRDKKRKQQQ 506
>gi|33457316 pleckstrin homology domain containing, family O member
2 [Homo sapiens]
Length = 490
Score = 42.7 bits (99), Expect = 0.001
Identities = 51/204 (25%), Positives = 73/204 (35%), Gaps = 23/204 (11%)
Query: 379 EKGSRVFCVEEEDSESSLQKRRRK--KKKKHHLQPENPGPGGAAPSLEQNRGREPEASGL 436
+ G VF SE+ ++ R K L PE PG + R P ++
Sbjct: 179 DSGPPVFAPSNHVSEAQPRETPRPLMPPTKPFLAPETTSPGDRVETPVGERAPTPVSASS 238
Query: 437 KALKARVAEPGAEATSSTGEESGSEHPPAVPMHNKRKRPRKKSPRAHREMLESAVLPPED 496
+ E ++ + E+SGSE PP + +K K + ESA P
Sbjct: 239 EVSP----ESQEDSETPAEEDSGSEQPPNSVLPDKLKVSWENPSPQEAPAAESA--EPSQ 292
Query: 497 MSQSGPSGSHPQGPRGSPTGGAQLLKRKRKLGV---------------VPVNGSGLSTPA 541
S S + P+ PT ++L K K + V VNG S
Sbjct: 293 APCSETSEAAPREGGKPPTPPPKILSEKLKASMGEMQASGPPAPGTVQVSVNGMDDSPEP 352
Query: 542 WPPLQQEGPPTGPAEGANSHTTLP 565
P Q EG P P + A + T LP
Sbjct: 353 AKPSQAEGTPGTPPKDATTSTALP 376
>gi|122937223 NOBOX oogenesis homeobox [Homo sapiens]
Length = 490
Score = 42.4 bits (98), Expect = 0.002
Identities = 56/230 (24%), Positives = 94/230 (40%), Gaps = 33/230 (14%)
Query: 398 KRRRKKKKKHHLQPENPGPG------GAAPSLEQNRGRE-PEASGLKALKARVAEPGAEA 450
KR + +K +P GPG G+AP + + E P + + K +P A +
Sbjct: 92 KRELTRGQKAGEKPLAAGPGEEELLRGSAPHAQDTQSEELPPSCTISGEK----KPPAVS 147
Query: 451 TSSTGEESGSEHPPAVPMHNKRKRPRKKSPRAHREMLESAVLPPEDMSQ--SGPSGSHPQ 508
+TG ++G PP PR ++P R + S P+ + S P G
Sbjct: 148 GEATGADAGRLCPP----------PRSRAPHKDRTLARSR---PQTQGEDCSLPVGEVKI 194
Query: 509 GPRG-SPTGGAQLLKRKRKLGVVPVNGSGLSTPAWPPLQQE--GPPTGPAEGANSHTTLP 565
G R SP G Q K+ +G+ P + G A G GP AN +TL
Sbjct: 195 GKRSYSPAPGKQ--KKPNAMGLAPTSSPGAPNSARATHNPVPCGSGRGPCHLANLLSTLA 252
Query: 566 QRRRLQKKKAGPGSLELCGLPSQKTASLKKRKKMRVMSNLVEHNGVLESE 615
Q + + K GP + C + +KT +L + ++ + + + + +S+
Sbjct: 253 QSNQNRDHKQGPPEV-TCQI-RKKTRTLYRSDQLEELEKIFQEDHYPDSD 300
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 42.0 bits (97), Expect = 0.002
Identities = 66/280 (23%), Positives = 96/280 (34%), Gaps = 42/280 (15%)
Query: 399 RRRKKKKKHHLQPENPGPGGAAPSLEQNRGREPEASGLKALKARVAEPGAEATSSTGEES 458
R+ +K K E P PG P Q +P GL+ + V E G +
Sbjct: 1385 RQGEKGAKGEAGAEGP-PGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPP 1443
Query: 459 GSEHPPAVPMHNKRKRPRKKSPRAHREMLESAVLPPEDMSQSGPSGSHPQGPRGSPTGGA 518
G PP +P + P K + H ++ + PP + + G G G +GSP
Sbjct: 1444 GPMGPPGLP--GLKGDPGSKGEKGHPGLI-GLIGPPGEQGEKGDRGL--PGTQGSPGAKG 1498
Query: 519 QLLKRKRKLGVVPVNGSGLSTPAWPPLQ-QEGP-----PTGPAEGANSHTTLPQRRRLQK 572
G +P L P P L +GP TGPA G + LP
Sbjct: 1499 D--------GGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPA-GQKGDSGLP------- 1542
Query: 573 KKAGPGSLELCGLPSQKTASLKKRKKMRVMSNLV--EHNGVLESEAGQPQALGSSGTCSS 630
PGS G Q L +K R + + +L+ G + GS +
Sbjct: 1543 --GPPGSPGPPGEVIQPLPILSSKKTRRHTEGMQADADDNILDYSDGMEEIFGSLNS--- 1597
Query: 631 LKKQKLRAESDFVKFDTPFLPKPLFFRRAKSSTATHPPGP 670
L+ + + +KF P R K +HP P
Sbjct: 1598 -----LKQDIEHMKFPMGTQTNPA--RTCKDLQLSHPDFP 1630
Score = 30.4 bits (67), Expect = 6.4
Identities = 53/183 (28%), Positives = 69/183 (37%), Gaps = 61/183 (33%)
Query: 410 QPENPGPGGAA--PSLEQNRGREPEASGLKALKARVAEPGAEATSSTGEESGSEHPPAVP 467
QP PGP G A P RG P A+G + R E GA+ E+G+E PP
Sbjct: 1355 QPGPPGPSGEAGPPGPPGKRG-PPGAAGAEG---RQGEKGAKG------EAGAEGPP--- 1401
Query: 468 MHNKRKRPRKKSPRAHREMLESAVLPPEDMSQSGPSGSHPQGPRGSPTGGAQLLKRKRKL 527
++GP G PQGP G P G + L+
Sbjct: 1402 ------------------------------GKTGPVG--PQGPAGKP--GPEGLR----- 1422
Query: 528 GVV-PVNGSGLSTPAWPPLQQEGPPTGPAEGANSHTTLPQRRRLQKKKAGPGSLELCGLP 586
G+ PV GL A Q+GPP GP G L + +K PG + L G P
Sbjct: 1423 GIPGPVGEQGLPGAA----GQDGPP-GPM-GPPGLPGLKGDPGSKGEKGHPGLIGLIGPP 1476
Query: 587 SQK 589
++
Sbjct: 1477 GEQ 1479
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 42.0 bits (97), Expect = 0.002
Identities = 66/280 (23%), Positives = 96/280 (34%), Gaps = 42/280 (15%)
Query: 399 RRRKKKKKHHLQPENPGPGGAAPSLEQNRGREPEASGLKALKARVAEPGAEATSSTGEES 458
R+ +K K E P PG P Q +P GL+ + V E G +
Sbjct: 1334 RQGEKGAKGEAGAEGP-PGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPP 1392
Query: 459 GSEHPPAVPMHNKRKRPRKKSPRAHREMLESAVLPPEDMSQSGPSGSHPQGPRGSPTGGA 518
G PP +P + P K + H ++ + PP + + G G G +GSP
Sbjct: 1393 GPMGPPGLP--GLKGDPGSKGEKGHPGLI-GLIGPPGEQGEKGDRGL--PGTQGSPGAKG 1447
Query: 519 QLLKRKRKLGVVPVNGSGLSTPAWPPLQ-QEGP-----PTGPAEGANSHTTLPQRRRLQK 572
G +P L P P L +GP TGPA G + LP
Sbjct: 1448 D--------GGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPA-GQKGDSGLP------- 1491
Query: 573 KKAGPGSLELCGLPSQKTASLKKRKKMRVMSNLV--EHNGVLESEAGQPQALGSSGTCSS 630
PGS G Q L +K R + + +L+ G + GS +
Sbjct: 1492 --GPPGSPGPPGEVIQPLPILSSKKTRRHTEGMQADADDNILDYSDGMEEIFGSLNS--- 1546
Query: 631 LKKQKLRAESDFVKFDTPFLPKPLFFRRAKSSTATHPPGP 670
L+ + + +KF P R K +HP P
Sbjct: 1547 -----LKQDIEHMKFPMGTQTNPA--RTCKDLQLSHPDFP 1579
Score = 30.4 bits (67), Expect = 6.4
Identities = 53/183 (28%), Positives = 69/183 (37%), Gaps = 61/183 (33%)
Query: 410 QPENPGPGGAA--PSLEQNRGREPEASGLKALKARVAEPGAEATSSTGEESGSEHPPAVP 467
QP PGP G A P RG P A+G + R E GA+ E+G+E PP
Sbjct: 1304 QPGPPGPSGEAGPPGPPGKRG-PPGAAGAEG---RQGEKGAKG------EAGAEGPP--- 1350
Query: 468 MHNKRKRPRKKSPRAHREMLESAVLPPEDMSQSGPSGSHPQGPRGSPTGGAQLLKRKRKL 527
++GP G PQGP G P G + L+
Sbjct: 1351 ------------------------------GKTGPVG--PQGPAGKP--GPEGLR----- 1371
Query: 528 GVV-PVNGSGLSTPAWPPLQQEGPPTGPAEGANSHTTLPQRRRLQKKKAGPGSLELCGLP 586
G+ PV GL A Q+GPP GP G L + +K PG + L G P
Sbjct: 1372 GIPGPVGEQGLPGAA----GQDGPP-GPM-GPPGLPGLKGDPGSKGEKGHPGLIGLIGPP 1425
Query: 587 SQK 589
++
Sbjct: 1426 GEQ 1428
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 42.0 bits (97), Expect = 0.002
Identities = 66/280 (23%), Positives = 96/280 (34%), Gaps = 42/280 (15%)
Query: 399 RRRKKKKKHHLQPENPGPGGAAPSLEQNRGREPEASGLKALKARVAEPGAEATSSTGEES 458
R+ +K K E P PG P Q +P GL+ + V E G +
Sbjct: 1373 RQGEKGAKGEAGAEGP-PGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPP 1431
Query: 459 GSEHPPAVPMHNKRKRPRKKSPRAHREMLESAVLPPEDMSQSGPSGSHPQGPRGSPTGGA 518
G PP +P + P K + H ++ + PP + + G G G +GSP
Sbjct: 1432 GPMGPPGLP--GLKGDPGSKGEKGHPGLI-GLIGPPGEQGEKGDRGL--PGTQGSPGAKG 1486
Query: 519 QLLKRKRKLGVVPVNGSGLSTPAWPPLQ-QEGP-----PTGPAEGANSHTTLPQRRRLQK 572
G +P L P P L +GP TGPA G + LP
Sbjct: 1487 D--------GGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPA-GQKGDSGLP------- 1530
Query: 573 KKAGPGSLELCGLPSQKTASLKKRKKMRVMSNLV--EHNGVLESEAGQPQALGSSGTCSS 630
PGS G Q L +K R + + +L+ G + GS +
Sbjct: 1531 --GPPGSPGPPGEVIQPLPILSSKKTRRHTEGMQADADDNILDYSDGMEEIFGSLNS--- 1585
Query: 631 LKKQKLRAESDFVKFDTPFLPKPLFFRRAKSSTATHPPGP 670
L+ + + +KF P R K +HP P
Sbjct: 1586 -----LKQDIEHMKFPMGTQTNPA--RTCKDLQLSHPDFP 1618
Score = 30.4 bits (67), Expect = 6.4
Identities = 53/183 (28%), Positives = 69/183 (37%), Gaps = 61/183 (33%)
Query: 410 QPENPGPGGAA--PSLEQNRGREPEASGLKALKARVAEPGAEATSSTGEESGSEHPPAVP 467
QP PGP G A P RG P A+G + R E GA+ E+G+E PP
Sbjct: 1343 QPGPPGPSGEAGPPGPPGKRG-PPGAAGAEG---RQGEKGAKG------EAGAEGPP--- 1389
Query: 468 MHNKRKRPRKKSPRAHREMLESAVLPPEDMSQSGPSGSHPQGPRGSPTGGAQLLKRKRKL 527
++GP G PQGP G P G + L+
Sbjct: 1390 ------------------------------GKTGPVG--PQGPAGKP--GPEGLR----- 1410
Query: 528 GVV-PVNGSGLSTPAWPPLQQEGPPTGPAEGANSHTTLPQRRRLQKKKAGPGSLELCGLP 586
G+ PV GL A Q+GPP GP G L + +K PG + L G P
Sbjct: 1411 GIPGPVGEQGLPGAA----GQDGPP-GPM-GPPGLPGLKGDPGSKGEKGHPGLIGLIGPP 1464
Query: 587 SQK 589
++
Sbjct: 1465 GEQ 1467
>gi|50962882 G patch domain containing 8 [Homo sapiens]
Length = 1502
Score = 42.0 bits (97), Expect = 0.002
Identities = 39/165 (23%), Positives = 67/165 (40%), Gaps = 21/165 (12%)
Query: 362 KHKKKGNKLLEKTNLEKEKGSRVFCVEEEDSESSLQKRRRKKKKKHHL----------QP 411
+HKKK + K K + +S +KR+++K+KK+ +P
Sbjct: 674 RHKKKKKHKKSSKHKRKHKADTEEKSSKAESGEKSKKRKKRKRKKNKSSAPADSERGPKP 733
Query: 412 ENPGPGGAAPSLEQNRGREPEASGLKALKARVAEPGAE----ATSSTGEESGSEHPPAVP 467
E PG G AP + R R + S ++L A G + SS+ + G +H +P
Sbjct: 734 EPPGSGSPAP--PRRRRRAQDDSQRRSLPAEEGSSGKKDEGGGGSSSQDHGGRKHKGELP 791
Query: 468 MHNKRKR--PRKKSPRAHREMLESAVLPPEDMSQSGPSGSHPQGP 510
+ ++R ++ S +HR S ED + H + P
Sbjct: 792 PSSCQRRAGTKRSSRSSHRSQPSSG---DEDSDDASSHRLHQKSP 833
>gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B
subunit [Homo sapiens]
Length = 2339
Score = 41.6 bits (96), Expect = 0.003
Identities = 73/315 (23%), Positives = 121/315 (38%), Gaps = 35/315 (11%)
Query: 332 QDLSEGSSISQLSFAE-DISADEDDQILSQGKHKKKGNKLLEKTNLEKEKGSRVFCVEEE 390
Q E + +S +S A I+A + + ++ +++ ++L L+ + S E
Sbjct: 736 QKAKEVAEVSPMSAANISIAARQQNSAKARSVWEQRASQL----RLQNLRASCEALYSEM 791
Query: 391 DSESSLQ----KRRRKKKKKHHLQP---ENPGPGGAAPSLEQNRGREPEA-SGLKALKAR 442
D E L+ + R K H +P E G P + R EA G+ +
Sbjct: 792 DPEERLRFATTRHLRPDMKTHLDRPLVVELGRDGARGPVGGKARPEAAEAPEGVDPPRRH 851
Query: 443 VAEPGAEATSSTGEESGSEHPPAVPMHNKRKRPRKKSPRAHREMLESAVLPPEDMSQ--- 499
+ T + G++ +E P A + R++ PR HR + A PPE S+
Sbjct: 852 HRHRDKDKTPAAGDQDRAEAPKA---ESGEPGAREERPRPHRSHSKEAAGPPEARSERGR 908
Query: 500 -SGPSGSHPQGPRGSPTGGAQLLKRKRKL--GVVPVNGSGLSTPAWPPLQQEGPPTGPAE 556
GP G RGSP A+ R+ + P + + GP GP E
Sbjct: 909 GPGPEGGRRHHRRGSPEEAAEREPRRHRAHRHQDPSKECAGAKGERRARHRGGPRAGPRE 968
Query: 557 GANSHTTLPQRRRLQKKKAGPGSLELCGLPSQKTASLKKRKKMRVMSNLVEHNGVLESEA 616
+ P RR + KA P + ++K A+ K+ + +VE + E
Sbjct: 969 AESGEE--PARRHRARHKAQPAHEAVEKETTEKEATEKE-------AEIVEADKEKELRN 1019
Query: 617 GQPQA----LGSSGT 627
QP+ L +SGT
Sbjct: 1020 HQPREPHCDLETSGT 1034
>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
Length = 2817
Score = 41.6 bits (96), Expect = 0.003
Identities = 37/169 (21%), Positives = 71/169 (42%), Gaps = 6/169 (3%)
Query: 347 EDISADEDDQILSQGKHKKKGNKLLEKTNLEKEKGSRVFCVEEEDSESSLQKRRRKKKKK 406
+++ +++ Q + + K++ K LE+ +KEK + ++E++ E L+K R K ++K
Sbjct: 543 KELEKEQEKQREMEKERKQEKEKELER---QKEKEKELQKMKEQEKECELEKEREKLEEK 599
Query: 407 HHLQPENPGPGGAAPSLEQNRGREPEASGLKALKARVAEPGAEATSSTGEESGSEHPPAV 466
+ N P E + +E E + R + T ESGS+ PAV
Sbjct: 600 IEPREPNLEPMVEKQESENSCNKEEEPVFTRQDSNRSEKEATPVVHETEPESGSQPRPAV 659
Query: 467 PMHNKRKRPRKKSPRAHREMLESAVLPPEDMSQSGPSGSHPQGPRGSPT 515
++ + PR R+ + + + Q G PQ P+
Sbjct: 660 LSGYFKQFQKSLPPRFQRQQEQ---MKQQQWQQQQQQGVLPQTVPSQPS 705
Score = 30.0 bits (66), Expect = 8.3
Identities = 51/247 (20%), Positives = 90/247 (36%), Gaps = 38/247 (15%)
Query: 342 QLSFAEDISADEDDQILSQGKHKKKGNKLLEKTNLEKEKGSRVFCVEEEDSESSLQK--- 398
+L E + E+ + + K +++ +L ++ E+EK +++ E L+K
Sbjct: 491 KLGILEKQPSPEEIREREREKEREREKELEKEQEQEREKEREKDRERQQEKEKELEKEQE 550
Query: 399 ------RRRKKKKKHHLQPENPGPGGAAPSLEQNRGREPEASGLK-ALKARVAEPGAEAT 451
+ RK++K+ L+ + EQ + E E K K EP E
Sbjct: 551 KQREMEKERKQEKEKELERQKEKEKELQKMKEQEKECELEKEREKLEEKIEPREPNLEPM 610
Query: 452 SSTGEESGS---EHPPAVPMHNKRKRPRKKSPRAHREMLESAVLPPEDMSQSGP---SGS 505
E S E P + + ++ +P H PE SQ P SG
Sbjct: 611 VEKQESENSCNKEEEPVFTRQDSNRSEKEATPVVHE-------TEPESGSQPRPAVLSGY 663
Query: 506 HPQGPRGSPTGGAQLLKRKRKLGVVPVNGSGLSTPAWPPLQQEG--PPTGPAEGANSHTT 563
Q + P +R+++ + W QQ+G P T P++ ++S
Sbjct: 664 FKQFQKSLP----PRFQRQQE---------QMKQQQWQQQQQQGVLPQTVPSQPSSSTVP 710
Query: 564 LPQRRRL 570
P R L
Sbjct: 711 PPPHRPL 717
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 41.2 bits (95), Expect = 0.004
Identities = 48/170 (28%), Positives = 58/170 (34%), Gaps = 28/170 (16%)
Query: 414 PGPGGAAPSLEQNRGREPEASGLKALKARVAEPGA-EATSSTGEESGSEHPPAVPMHNKR 472
PG G A P+ P SG A PG+ + T + + PP P
Sbjct: 119 PGVGSAPPASSSAPPATPPTSG--------APPGSGPGPTPTPPPAVTSAPPGAPP---- 166
Query: 473 KRPRKKSPRAHREMLESAVLPPEDMSQSGPSGSHPQGPR-GSPTGGAQLLKRKRKLGVVP 531
P S ++ PP + GP QGP G P GG K G P
Sbjct: 167 --PTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGG------KMPGGPKP 218
Query: 532 VNGSGLSTPAW---PPLQQEGPPTGPAEGANSHTTLPQRRRLQKKKAGPG 578
G GLSTP PP + G P G G H Q+ GPG
Sbjct: 219 GGGPGLSTPGGHPKPPHRGGGEPRG---GRQHHPPYHQQHHQGPPPGGPG 265
>gi|21396500 HIRA interacting protein 3 [Homo sapiens]
Length = 556
Score = 40.8 bits (94), Expect = 0.005
Identities = 67/354 (18%), Positives = 129/354 (36%), Gaps = 47/354 (13%)
Query: 309 EMTSRKNTPHFNRKRLSKLIKKFQDLSEGSSISQLSFAEDISADEDDQILSQGKHKK--K 366
E +S + + K K + K Q + +S+S+ E+ E + + K + K
Sbjct: 157 EESSEEEEKGYKGKTRKKPVVKKQAPGK-ASVSRKQAREESEESEAEPVQRTAKKVEGNK 215
Query: 367 GNKLLEKTNLEKEKGSRVFCVEEEDSESSLQKRRRKKKKKHHLQPENPGPGGAAPSLEQN 426
G K L+++ E+E + ++E E +++ +++ ++ G S +
Sbjct: 216 GTKSLKES--EQESEEEILAQKKEQREEEVEEEEKEEDEEKGDWKPRTRSNGRRKSAREE 273
Query: 427 RGREPEASGLKALKARVAEPGAEATSSTGEESGSEHPPAVPMHNKRKRPRKKSPRAHREM 486
R + ++ + L +E + +S+G++SG + P V ++ + K R
Sbjct: 274 RSCKQKSQAKRLLGDSDSEEEQKEAASSGDDSGRDREPPVQRKSEDRTQLKGGKRL---- 329
Query: 487 LESAVLPPEDMSQSGPSGSHPQGPRGSPTGGAQLLKRKRKLGVVPVNGSGLSTPAWPPLQ 546
SG S +G PT A+ ++ +LG S L +
Sbjct: 330 -------------SGSSEDEEDSGKGEPT--AKGSRKMARLGSTSGEESDLEREV-SDSE 373
Query: 547 QEGPPTGPAEGANSHTTLPQRRRLQKKKAGPGSLELCG-----------------LPSQK 589
G P G + +S + + R + GS E G L
Sbjct: 374 AGGGPQGERKNRSSKKSSRKGRTRSSSSSSDGSPEAKGGKAGSGRRGEDHPAVMRLKRYI 433
Query: 590 TASLKKRKKMRVMSNLVEHNGVLESEAGQPQALGSSGT-----CSSLKKQKLRA 638
A R +++ + H L + +ALG GT C +LK+Q+ A
Sbjct: 434 RACGAHRNYKKLLGSCCSHKERLSILRAELEALGMKGTPSLGKCRALKEQREEA 487
>gi|50428935 BPY2 interacting protein 1 [Homo sapiens]
Length = 1059
Score = 40.8 bits (94), Expect = 0.005
Identities = 56/211 (26%), Positives = 81/211 (38%), Gaps = 19/211 (9%)
Query: 378 KEKGSRVFCVEEEDSESSLQKRRRKKKKKHHLQPENPGPGGAAPSLEQNRGREPEASGLK 437
+ S V +++ +++++ + R+ P GP + PSL P A+
Sbjct: 542 RRAASSVPNLKKTNAQAAPKPRKAPSTSHSGFPPVANGPR-SPPSLRCGEASPPSAACGS 600
Query: 438 ALKARVAEPGAE-ATSSTGEESGSEHPPAVPMHNKRKRPRKKSPRAHREMLESAVLPPED 496
VA P E GEE E P A + RPR SP +HR E + E
Sbjct: 601 PASQLVATPSLELGPIPAGEEKALELPLAA---SSIPRPRTPSPESHRSPAEGS----ER 653
Query: 497 MSQSGPSGSHPQGPRGSPTGGAQLLKRKRKLGVVPVNGSGLSTPAWPPL----QQEGPPT 552
+S S P GP SPT + V GS ST L +Q PP+
Sbjct: 654 LSLS-PLRGGEAGPDASPTVTTPTVTTPSLPAEV---GSPHSTEVDESLSVSFEQVLPPS 709
Query: 553 GPAEGANSHTTLPQRRRLQKKKAGPGSLELC 583
P A +LP R ++ A P ++LC
Sbjct: 710 APTSEAG--LSLPLRGPRARRSASPHDVDLC 738
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 40.8 bits (94), Expect = 0.005
Identities = 64/267 (23%), Positives = 91/267 (34%), Gaps = 29/267 (10%)
Query: 431 PEASGLKALKARVAEPGAEATSSTGEESGSEHPPAVPMHNKRKRPRKK---------SPR 481
P A + + K A P + +T + PPAV + P K SP
Sbjct: 1550 PPAMTVPSPKKTPAIPTPKEAPATPSSKEASSPPAVTPSTYKGAPSPKELLIPPAVTSPS 1609
Query: 482 AHREMLESAVLPPEDMSQSGPSGSHPQGPRGSPTGGAQLLKRKR--------KLGV-VPV 532
AV PP + GP+ P+G SP LK K+G VP
Sbjct: 1610 PKEAPTPPAVTPPSP--EKGPATPAPKGTPTSPPVTPSSLKDSPTSPASVTCKMGATVPQ 1667
Query: 533 NGSGLSTPAWPPLQQEGPPTGPAEGANSHTTLPQRRRLQKKKAGPGSLELCGLPSQKTAS 592
GL P +E PA + T P R+ Q KK+ S +C PS K S
Sbjct: 1668 ASKGLPAKKGPTALKE-VLVAPAPESTPIITAPTRKGPQTKKSSATSPPICPDPSAKNGS 1726
Query: 593 LKKRKKMRVMSNLVEHNGVLESEAGQPQALGSSGTCSSLKKQKLRAESDFVKFDTPFLPK 652
+ L ++ G+ + G + + K F+ LPK
Sbjct: 1727 KGPLSTVAPAPLLPVQKDSSKTAKGKDASHSPKGPLAP-PESKASTPLTAAAFE-KVLPK 1784
Query: 653 PLFFRRAKSSTATHPPGPAVQLNKTPS 679
P +S++ + P P V L PS
Sbjct: 1785 P------ESASVSAAPSPPVSLPLAPS 1805
Score = 37.4 bits (85), Expect = 0.052
Identities = 79/348 (22%), Positives = 113/348 (32%), Gaps = 72/348 (20%)
Query: 414 PGPGGAAPSLEQNRGREPEASGLKALKARVAEPGAEATSSTGEESGSEHPPAVPMHNKRK 473
P A P + P G A P + +T G+ PA + +
Sbjct: 1172 PTTPAATPPSPKGGLATPSPKGAPTTPA-ATPPSPKGGLATPSPKGAPTTPAATPPSPKG 1230
Query: 474 RPRKKSPRAHREMLESAVLPPEDMSQSGPSGSHPQGPRGSPTGGAQLLKRKRKLGVVPVN 533
SP+ A PP + GP+ P+G P LK L P
Sbjct: 1231 GLATPSPKG--APTTPAATPPSP--KGGPATPPPKGAPTPPAATPPSLKGG--LATPPHK 1284
Query: 534 GSGLSTPAWPPLQQEGPPTGPAEGANSHTTLPQRRRLQKKKAGPGSLELCGLPSQKTASL 593
G+ PP + GP T P +GA + P K PG+ G P+ +
Sbjct: 1285 GAPNPAVVTPPSPKGGPATSPPKGAPT----PPAATPPSPKGSPGTPPPKGAPTPPAVTP 1340
Query: 594 KKRKKMRVMSNLVEHNGVLESEAGQPQALGSSGTCSSLKKQKLRAESDFVKFDTPFLPKP 653
K G A P + G T SS + P P
Sbjct: 1341 PSPK------------GTPTLPATTPSSKGGPTTPSSKEG-----------------PTP 1371
Query: 654 LFFRRAKSSTATHPPGPAVQLNKTPSSSKKVTFGLNRNMTAEFKKTDKSILVSPTGPSRV 713
++T +H GPA+ TP S K R K D PT P+ +
Sbjct: 1372 ------PAATPSHKGGPAM----TPPSPK-------RGPAIPSPKGD------PTSPAVI 1408
Query: 714 AFDPEQKPLHGVLK----TPT----SSPASSPLVAKK-PLTTTPRRRP 752
P++ P V + TP+ + PA +P+ KK P T+ P+ P
Sbjct: 1409 PLSPKKAPATPVTREGAATPSKGDLTPPAVTPVSLKKAPATSAPKGGP 1456
Score = 37.0 bits (84), Expect = 0.068
Identities = 76/338 (22%), Positives = 110/338 (32%), Gaps = 17/338 (5%)
Query: 414 PGPGGAAPSLEQNRGREPEASGLKALKARVAEPGAEATSSTGEESGSEHPPAVPMHNKRK 473
P P A P + P G A P + +T G+ PPAV + +
Sbjct: 963 PTPPAATPPSPKGGPATPSPKGAPTPPA-ATPPSPKGGPATPSPKGAPTPPAVTPPSPKG 1021
Query: 474 RPRKKSPRAHREMLESAVLPPEDMSQSGPSGSHPQGPRGSPTGGAQLLKRKRKLGVVP-V 532
P +P A PP S G + P P+G+PT A L + P +
Sbjct: 1022 SPAA-TPFPKGASTPPAATPP---SPKGSPAATPL-PKGAPTTPAATLPSPKGGPATPSL 1076
Query: 533 NGSGLSTPAWPPLQQEGPPTGPAEGANSHTTLPQRRRLQKKKAGPGSLELCGLPSQKTAS 592
G+ A PP + GP T +GA +P K G + G P+ A+
Sbjct: 1077 KGAPTPPAATPPSPKGGPATPSPKGA----PMPPAATPPSPKGGLATPPHKGAPTTPAAT 1132
Query: 593 LKKRKKMRVMSNLVEHNGVLESEAGQPQALGSSGTCSSLKKQKLRAESDFVKFDTPFLPK 652
K ++ A P G T A + P
Sbjct: 1133 PPSPK--GGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPS 1190
Query: 653 PLFFRRAKSSTATHPPGPAVQLNKTPSSSKKVTFGLNRNMTAEFKKTDKSILVSPTGPSR 712
P + A ++ A PP P L TPS T + + S +PT P+
Sbjct: 1191 P---KGAPTTPAATPPSPKGGL-ATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAA 1246
Query: 713 VAFDPEQKPLHGVLKTPTSSPASSPLVAKKPLTTTPRR 750
P+ P K + PA++P K L T P +
Sbjct: 1247 TPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHK 1284
Score = 33.1 bits (74), Expect = 0.98
Identities = 70/342 (20%), Positives = 114/342 (33%), Gaps = 51/342 (14%)
Query: 414 PGPGGAAPSLEQNRGREPEASGLKALKARVAEPGAEATSSTGEESGSEHPPAVPMHNKRK 473
P P G + P A+ +LK +A P G+ +P V + +
Sbjct: 1249 PSPKGGPATPPPKGAPTPPAATPPSLKGGLATP---------PHKGAPNPAVVTPPSPKG 1299
Query: 474 RPRKKSPRAHREMLESAVLPPEDMSQSGPSGSHPQGPRGSPTGGAQLLKRKRKLGVVPVN 533
P P+ A PP S G G+ P P+G+PT A + +P
Sbjct: 1300 GPATSPPKG--APTPPAATPP---SPKGSPGTPP--PKGAPTPPAVTPPSPKGTPTLPAT 1352
Query: 534 GSGLSTPAWPPLQQEGPP---TGPAEGANSHTTLPQRRR---LQKKKAGPGSLELCGLPS 587
P +EGP P+ T P +R + K P S + L
Sbjct: 1353 TPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSP 1412
Query: 588 QKTASLKKRKKMRVMSNLVEHNGVLESEAGQPQALGSSGTCSSLKKQKLRAESDFVKFDT 647
+K + ++ + G L A P +L + S+ K S
Sbjct: 1413 KKAPATPVTREGAATPS----KGDLTPPAVTPVSLKKAPATSAPKGGPATPSSK----GD 1464
Query: 648 PFLPKPLFFRRAKSSTATHPPGPAVQLNKTPSSSKKVTFGLNRNMTAEFKKTDKSILVSP 707
P LP A PP P K P + K+V + + + + + +P
Sbjct: 1465 PTLP------------AVTPPSP-----KEPPAPKQVA----TSSSPKKAPATPAPMGAP 1503
Query: 708 TGPSRVAFDPEQKPLHGVLKTPTSSPASSPLVAKKPLTTTPR 749
T P+ + P++ P + +P ++ L K P T P+
Sbjct: 1504 TLPAVIPSSPKEVPATPSSRRDPIAPTATLLSKKTPATLAPK 1545
Score = 33.1 bits (74), Expect = 0.98
Identities = 77/353 (21%), Positives = 129/353 (36%), Gaps = 44/353 (12%)
Query: 411 PENPGPGGAA--PSLEQNRGREPEA--SGLKALKARVAEPGAEATSSTGEESGSEHPPAV 466
P P P GA P++ + +E A S + A A ++ T +T + PPA+
Sbjct: 1494 PATPAPMGAPTLPAVIPSSPKEVPATPSSRRDPIAPTATLLSKKTPATLAPKEALIPPAM 1553
Query: 467 PMHNKRKRPRKKSPRAHREMLESAVLPPEDMSQSGPSGSHPQGPRGSPTGGAQLLKRKRK 526
+ + +K P +P+ A P S P P +G+P+ L+
Sbjct: 1554 TVPSPKKTPAIPTPK-------EAPATPSSKEASSPPAVTPSTYKGAPSPKELLIPP--- 1603
Query: 527 LGVVPVNGSGLSTP--AWPPLQQEGPPTGPAEGANSHTTLPQRRRLQKKKAGPGSLELCG 584
V + TP PP ++GP T +G + + L+ P S+ C
Sbjct: 1604 -AVTSPSPKEAPTPPAVTPPSPEKGPATPAPKGTPTSPPVTPSS-LKDSPTSPASVT-CK 1660
Query: 585 LPSQKTASLKKRKKMRVMSNLVEHNGVLESEAGQPQALGSSGTCSSLKKQKLRAESDFVK 644
+ + + K + + L E VL + A + + ++ T + +K A S
Sbjct: 1661 MGATVPQASKGLPAKKGPTALKE---VLVAPAPESTPIITAPTRKGPQTKKSSATSP--- 1714
Query: 645 FDTPFLPKPLFFRRAKSSTATHPPGPAVQLNKTPSSSKKVTFGLNRNMTAEFKKTDKSIL 704
P P P +K +T P P + + K S + K + + K L
Sbjct: 1715 ---PICPDPSAKNGSKGPLSTVAPAPLLPVQKDSSKTAK---------GKDASHSPKGPL 1762
Query: 705 VSP-----TGPSRVAFDPE-QKPLHGVLKTPTSSPASSPLVAKKPLTTTPRRR 751
P T + AF+ KP + S P S PL A P+ T P ++
Sbjct: 1763 APPESKASTPLTAAAFEKVLPKPESASVSAAPSPPVSLPL-APSPVPTLPPKQ 1814
Score = 32.0 bits (71), Expect = 2.2
Identities = 76/360 (21%), Positives = 121/360 (33%), Gaps = 48/360 (13%)
Query: 414 PGPGGAAPSLEQNRGREPEASGLKALKARVAEPGAEATSSTGEES-GSEHPPAVPMHNKR 472
P P A P + P G A V P + T + + S+ P P +
Sbjct: 1310 PTPPAATPPSPKGSPGTPPPKGAPTPPA-VTPPSPKGTPTLPATTPSSKGGPTTPSSKEG 1368
Query: 473 KRPRKKSPRAHREMLESAVLPPEDMSQSGPSGSHPQGPRGSPTGGAQLLKRKRKLGVVPV 532
P +P +H+ A+ PP S G P+G PT A + +K PV
Sbjct: 1369 PTPPAATP-SHKG--GPAMTPP-----SPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPV 1420
Query: 533 NGSGLSTPAWPPLQQEGPPTGPAEGANSHTTLPQRRRLQKKKAGPGSLELCGLPSQKTAS 592
G +TP+ +G T PA + +L + K GP + G P+ +
Sbjct: 1421 TREGAATPS------KGDLTPPAV---TPVSLKKAPATSAPKGGPATPSSKGDPTLPAVT 1471
Query: 593 LKKRKKMRVMSNLVEHNGVLESEAGQ--------PQALGSS----GTCSSLKKQKLRAES 640
K+ + + ++ A P + SS S ++ + +
Sbjct: 1472 PPSPKEPPAPKQVATSSSPKKAPATPAPMGAPTLPAVIPSSPKEVPATPSSRRDPIAPTA 1531
Query: 641 DFVKFDTP--------FLPKPLFFRRAKSSTATHPP--GPAVQLNKTPSSSKKVTFGLNR 690
+ TP +P + K + A P PA +K SS VT +
Sbjct: 1532 TLLSKKTPATLAPKEALIPPAMTVPSPKKTPAIPTPKEAPATPSSKEASSPPAVTPSTYK 1591
Query: 691 NMTAEFK------KTDKSILVSPTGPSRVAFDPEQKPLHGVLK-TPTSSPASSPLVAKKP 743
+ + T S +PT P+ PE+ P K TPTS P + + P
Sbjct: 1592 GAPSPKELLIPPAVTSPSPKEAPTPPAVTPPSPEKGPATPAPKGTPTSPPVTPSSLKDSP 1651
>gi|98991767 mitogen-activated protein kinase kinase kinase 7
interacting protein 3 [Homo sapiens]
Length = 712
Score = 40.4 bits (93), Expect = 0.006
Identities = 55/256 (21%), Positives = 94/256 (36%), Gaps = 31/256 (12%)
Query: 460 SEHPPAVPMHNKRKRPRKKSPRAHREMLESAVLPPEDMSQSGPSGSHPQGPRGSPTGGAQ 519
S+ P V H + +P + SP+ + P+ S P P SP Q
Sbjct: 262 SQRPLPVYPHQQNYQPSQYSPKQQQI--------PQSAYHSPPPSQCP-----SPFSSPQ 308
Query: 520 LLKRKRKLGVVPVNGSGLSTPAWPPLQQEGPPTGPAEGANSHTTLPQRRRLQKKKAGPGS 579
+ +LG + + S +TP P Q+GPP+ +G++S LP K
Sbjct: 309 HQVQPSQLGHIFMPPSPSTTPPHP--YQQGPPSYQKQGSHSVAYLPYTAS-SLSKGSMKK 365
Query: 580 LELCGLPSQKTASLKKRKKMRVMSNLVEHNGVLESEAGQPQALGSSGTCSSLKKQKLRAE 639
+E+ PSQ+ + R + + N A P + S SS K
Sbjct: 366 IEITVEPSQRPGTAINRSPSPISNQPSPWNQHSLYTATTPPSSSPSRGISSQPKP----- 420
Query: 640 SDFVKFDTPFLPKPLFFRRAKSSTATHPPGPAVQLNKTPSSSKKVTFG--LNRNMTAEFK 697
PF P++ + + + P P+ ++ P++ K+T G N+
Sbjct: 421 --------PFSVNPVYITYTQPTGPSCTPSPSPRVIPNPTTVFKITVGRATTENLLNLVD 472
Query: 698 KTDKSILVSPTGPSRV 713
+ ++S P P V
Sbjct: 473 QEERSAAPEPIQPISV 488
>gi|157674363 protein phosphatase 1, regulatory subunit 15A [Homo
sapiens]
Length = 674
Score = 40.0 bits (92), Expect = 0.008
Identities = 38/159 (23%), Positives = 58/159 (36%), Gaps = 28/159 (17%)
Query: 360 QGKHKKKGNKLLEKTNLEKEKGSRVF-----------CVEEEDSESSLQKRRRKKKKKHH 408
QG K G + E+ + +E+G F VEEED E +++K +
Sbjct: 152 QGSDKNPGEEKAEEEGVAEEEGVNKFSYPPSHRECCPAVEEEDDEEAVKKEAHRTSTSAL 211
Query: 409 LQPENPGPGGAAPSLEQNRGREPEASGLKALKARVAEPGAEATSSTGEESGSEHPPAVPM 468
P + P E+N+ E K GA TS + SGS+ P
Sbjct: 212 SPGSKPSTWVSCPGEEENQATED--------KRTERSKGARKTSVSPRSSGSD--PRSWE 261
Query: 469 HNKRKRPRKKSPRAHREMLESAVLPPEDMSQSGPSGSHP 507
+ + +K +AH+E + P GP S P
Sbjct: 262 YRSGEASEEKEEKAHKETGKGEAAP-------GPQSSAP 293
>gi|27262645 ataxin 2 related protein isoform B [Homo sapiens]
Length = 1062
Score = 40.0 bits (92), Expect = 0.008
Identities = 80/343 (23%), Positives = 116/343 (33%), Gaps = 57/343 (16%)
Query: 407 HHLQPENPGPGGAAPSLEQNRGREPEASGLKALKARVAEPGAEATSS-TGEESGSEHPPA 465
HHL +PGPG A + R + KA+ GA+ SS + SG P
Sbjct: 385 HHLDNSSPGPGSEARGINGGPSR-------MSPKAQRPLRGAKTLSSPSNRPSGETSVPP 437
Query: 466 VPMHNKRKRPRKKSPRAHREMLESAVLPPEDMSQSGPSGSHPQGPRGSPTGGAQLLKRKR 525
P + PR A + S PP + S S P S G +
Sbjct: 438 PPAVGRMYPPRSPKSAAPAPISASCPEPPIGSAVPTSSASIPVTSSVSDPGVGSISPASP 497
Query: 526 KLGVVPVNGSGLSTPAWPPLQQEGPPTGPAEGANSHTTLPQRRRLQKK------------ 573
K+ + P + LST ++ G P E A +P + QK+
Sbjct: 498 KISLAPTDVKELST------KEPGRTLEPQELARIAGKVPGLQNEQKRFQLEELRKFGAQ 551
Query: 574 -KAGPGSLELCGLPSQKTASLKKRKKMRVMSNLVEHNGVLESEAGQPQALGSSGTCSSLK 632
K P S L LK+ K + E +G+L SE G+ S K
Sbjct: 552 FKLQPSSSPENSLDPFPPRILKEEPKGKEK----EVDGLLTSE--------PMGSPVSSK 599
Query: 633 KQKLRAESDFVKFDTPFLPKPLFFRRAKSSTATHPPGPAVQLNKTPSSSKKVTFGLNRNM 692
+ + + D KP + PP P PS + GL +
Sbjct: 600 TESVSDKED----------KPPLAPSGGTEGPEQPPPPC------PSQTGSPPVGLIKGE 643
Query: 693 TAEFKKTDKSILVSPTGPSRVAFDPEQKPLHGVLKTPTSSPAS 735
+ + + S P+ F+P KPL V K+ TS+P S
Sbjct: 644 DKDEGPVAEQVKKSTLNPNAKEFNP-TKPLLSVNKS-TSTPTS 684
>gi|27262653 ataxin 2 related protein isoform E [Homo sapiens]
Length = 1044
Score = 40.0 bits (92), Expect = 0.008
Identities = 80/343 (23%), Positives = 116/343 (33%), Gaps = 57/343 (16%)
Query: 407 HHLQPENPGPGGAAPSLEQNRGREPEASGLKALKARVAEPGAEATSS-TGEESGSEHPPA 465
HHL +PGPG A + R + KA+ GA+ SS + SG P
Sbjct: 385 HHLDNSSPGPGSEARGINGGPSR-------MSPKAQRPLRGAKTLSSPSNRPSGETSVPP 437
Query: 466 VPMHNKRKRPRKKSPRAHREMLESAVLPPEDMSQSGPSGSHPQGPRGSPTGGAQLLKRKR 525
P + PR A + S PP + S S P S G +
Sbjct: 438 PPAVGRMYPPRSPKSAAPAPISASCPEPPIGSAVPTSSASIPVTSSVSDPGVGSISPASP 497
Query: 526 KLGVVPVNGSGLSTPAWPPLQQEGPPTGPAEGANSHTTLPQRRRLQKK------------ 573
K+ + P + LST ++ G P E A +P + QK+
Sbjct: 498 KISLAPTDVKELST------KEPGRTLEPQELARIAGKVPGLQNEQKRFQLEELRKFGAQ 551
Query: 574 -KAGPGSLELCGLPSQKTASLKKRKKMRVMSNLVEHNGVLESEAGQPQALGSSGTCSSLK 632
K P S L LK+ K + E +G+L SE G+ S K
Sbjct: 552 FKLQPSSSPENSLDPFPPRILKEEPKGKEK----EVDGLLTSE--------PMGSPVSSK 599
Query: 633 KQKLRAESDFVKFDTPFLPKPLFFRRAKSSTATHPPGPAVQLNKTPSSSKKVTFGLNRNM 692
+ + + D KP + PP P PS + GL +
Sbjct: 600 TESVSDKED----------KPPLAPSGGTEGPEQPPPPC------PSQTGSPPVGLIKGE 643
Query: 693 TAEFKKTDKSILVSPTGPSRVAFDPEQKPLHGVLKTPTSSPAS 735
+ + + S P+ F+P KPL V K+ TS+P S
Sbjct: 644 DKDEGPVAEQVKKSTLNPNAKEFNP-TKPLLSVNKS-TSTPTS 684
>gi|27262649 ataxin 2 related protein isoform C [Homo sapiens]
Length = 1097
Score = 40.0 bits (92), Expect = 0.008
Identities = 80/343 (23%), Positives = 116/343 (33%), Gaps = 57/343 (16%)
Query: 407 HHLQPENPGPGGAAPSLEQNRGREPEASGLKALKARVAEPGAEATSS-TGEESGSEHPPA 465
HHL +PGPG A + R + KA+ GA+ SS + SG P
Sbjct: 385 HHLDNSSPGPGSEARGINGGPSR-------MSPKAQRPLRGAKTLSSPSNRPSGETSVPP 437
Query: 466 VPMHNKRKRPRKKSPRAHREMLESAVLPPEDMSQSGPSGSHPQGPRGSPTGGAQLLKRKR 525
P + PR A + S PP + S S P S G +
Sbjct: 438 PPAVGRMYPPRSPKSAAPAPISASCPEPPIGSAVPTSSASIPVTSSVSDPGVGSISPASP 497
Query: 526 KLGVVPVNGSGLSTPAWPPLQQEGPPTGPAEGANSHTTLPQRRRLQKK------------ 573
K+ + P + LST ++ G P E A +P + QK+
Sbjct: 498 KISLAPTDVKELST------KEPGRTLEPQELARIAGKVPGLQNEQKRFQLEELRKFGAQ 551
Query: 574 -KAGPGSLELCGLPSQKTASLKKRKKMRVMSNLVEHNGVLESEAGQPQALGSSGTCSSLK 632
K P S L LK+ K + E +G+L SE G+ S K
Sbjct: 552 FKLQPSSSPENSLDPFPPRILKEEPKGKEK----EVDGLLTSE--------PMGSPVSSK 599
Query: 633 KQKLRAESDFVKFDTPFLPKPLFFRRAKSSTATHPPGPAVQLNKTPSSSKKVTFGLNRNM 692
+ + + D KP + PP P PS + GL +
Sbjct: 600 TESVSDKED----------KPPLAPSGGTEGPEQPPPPC------PSQTGSPPVGLIKGE 643
Query: 693 TAEFKKTDKSILVSPTGPSRVAFDPEQKPLHGVLKTPTSSPAS 735
+ + + S P+ F+P KPL V K+ TS+P S
Sbjct: 644 DKDEGPVAEQVKKSTLNPNAKEFNP-TKPLLSVNKS-TSTPTS 684
>gi|27262647 ataxin 2 related protein isoform A [Homo sapiens]
Length = 1075
Score = 40.0 bits (92), Expect = 0.008
Identities = 80/343 (23%), Positives = 116/343 (33%), Gaps = 57/343 (16%)
Query: 407 HHLQPENPGPGGAAPSLEQNRGREPEASGLKALKARVAEPGAEATSS-TGEESGSEHPPA 465
HHL +PGPG A + R + KA+ GA+ SS + SG P
Sbjct: 385 HHLDNSSPGPGSEARGINGGPSR-------MSPKAQRPLRGAKTLSSPSNRPSGETSVPP 437
Query: 466 VPMHNKRKRPRKKSPRAHREMLESAVLPPEDMSQSGPSGSHPQGPRGSPTGGAQLLKRKR 525
P + PR A + S PP + S S P S G +
Sbjct: 438 PPAVGRMYPPRSPKSAAPAPISASCPEPPIGSAVPTSSASIPVTSSVSDPGVGSISPASP 497
Query: 526 KLGVVPVNGSGLSTPAWPPLQQEGPPTGPAEGANSHTTLPQRRRLQKK------------ 573
K+ + P + LST ++ G P E A +P + QK+
Sbjct: 498 KISLAPTDVKELST------KEPGRTLEPQELARIAGKVPGLQNEQKRFQLEELRKFGAQ 551
Query: 574 -KAGPGSLELCGLPSQKTASLKKRKKMRVMSNLVEHNGVLESEAGQPQALGSSGTCSSLK 632
K P S L LK+ K + E +G+L SE G+ S K
Sbjct: 552 FKLQPSSSPENSLDPFPPRILKEEPKGKEK----EVDGLLTSE--------PMGSPVSSK 599
Query: 633 KQKLRAESDFVKFDTPFLPKPLFFRRAKSSTATHPPGPAVQLNKTPSSSKKVTFGLNRNM 692
+ + + D KP + PP P PS + GL +
Sbjct: 600 TESVSDKED----------KPPLAPSGGTEGPEQPPPPC------PSQTGSPPVGLIKGE 643
Query: 693 TAEFKKTDKSILVSPTGPSRVAFDPEQKPLHGVLKTPTSSPAS 735
+ + + S P+ F+P KPL V K+ TS+P S
Sbjct: 644 DKDEGPVAEQVKKSTLNPNAKEFNP-TKPLLSVNKS-TSTPTS 684
>gi|27262651 ataxin 2 related protein isoform D [Homo sapiens]
Length = 1044
Score = 40.0 bits (92), Expect = 0.008
Identities = 80/343 (23%), Positives = 116/343 (33%), Gaps = 57/343 (16%)
Query: 407 HHLQPENPGPGGAAPSLEQNRGREPEASGLKALKARVAEPGAEATSS-TGEESGSEHPPA 465
HHL +PGPG A + R + KA+ GA+ SS + SG P
Sbjct: 385 HHLDNSSPGPGSEARGINGGPSR-------MSPKAQRPLRGAKTLSSPSNRPSGETSVPP 437
Query: 466 VPMHNKRKRPRKKSPRAHREMLESAVLPPEDMSQSGPSGSHPQGPRGSPTGGAQLLKRKR 525
P + PR A + S PP + S S P S G +
Sbjct: 438 PPAVGRMYPPRSPKSAAPAPISASCPEPPIGSAVPTSSASIPVTSSVSDPGVGSISPASP 497
Query: 526 KLGVVPVNGSGLSTPAWPPLQQEGPPTGPAEGANSHTTLPQRRRLQKK------------ 573
K+ + P + LST ++ G P E A +P + QK+
Sbjct: 498 KISLAPTDVKELST------KEPGRTLEPQELARIAGKVPGLQNEQKRFQLEELRKFGAQ 551
Query: 574 -KAGPGSLELCGLPSQKTASLKKRKKMRVMSNLVEHNGVLESEAGQPQALGSSGTCSSLK 632
K P S L LK+ K + E +G+L SE G+ S K
Sbjct: 552 FKLQPSSSPENSLDPFPPRILKEEPKGKEK----EVDGLLTSE--------PMGSPVSSK 599
Query: 633 KQKLRAESDFVKFDTPFLPKPLFFRRAKSSTATHPPGPAVQLNKTPSSSKKVTFGLNRNM 692
+ + + D KP + PP P PS + GL +
Sbjct: 600 TESVSDKED----------KPPLAPSGGTEGPEQPPPPC------PSQTGSPPVGLIKGE 643
Query: 693 TAEFKKTDKSILVSPTGPSRVAFDPEQKPLHGVLKTPTSSPAS 735
+ + + S P+ F+P KPL V K+ TS+P S
Sbjct: 644 DKDEGPVAEQVKKSTLNPNAKEFNP-TKPLLSVNKS-TSTPTS 684
>gi|221316599 chromogranin B precursor [Homo sapiens]
Length = 677
Score = 39.7 bits (91), Expect = 0.010
Identities = 47/199 (23%), Positives = 81/199 (40%), Gaps = 26/199 (13%)
Query: 242 GDLSAEEIPENEVSLRRAVSKKKTALGKNHSRKDGLSDERGRDDCGTFEDTGPLLQFDYK 301
G S E E + SL + S+ + HS K DE E+ G Q +
Sbjct: 127 GGHSRERADEPQWSLYPSDSQVSEEVKTRHSEKSQREDEE--------EEEGENYQKGER 178
Query: 302 ---AVADRLLEMTSRKNTPHFNRKRLSKLIKKFQDLSE------GSSISQLSFAEDISAD 352
+ ++ LE N ++ + IKK + ++ G S + E S +
Sbjct: 179 GEDSSEEKHLEEPGETQNAFLNERKQASAIKKEELVARSETHAAGHSQEKTHSREKSSQE 238
Query: 353 EDDQILSQGKHKKKGNKLLEKTNLEKEKGSRVFCVEEEDSESSLQKRRRKKKKKH-HLQP 411
++ SQ H ++ +K ++ E E+G EED+ S + KRR + + H +P
Sbjct: 239 SGEETGSQENHPQE-SKGQPRSQEESEEG-------EEDATSEVDKRRTRPRHHHGRSRP 290
Query: 412 ENPGPGGAAPSLEQNRGRE 430
+ GG+ PS E+ +E
Sbjct: 291 DRSSQGGSLPSEEKGHPQE 309
>gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens]
Length = 1374
Score = 39.7 bits (91), Expect = 0.010
Identities = 51/209 (24%), Positives = 67/209 (32%), Gaps = 35/209 (16%)
Query: 404 KKKHHLQPENPGPGGAAPSLEQNRGREP----------EASGLKALKARVAEPGAEATSS 453
K+ PE PG L+ +EP A GL V E SS
Sbjct: 712 KQTPRASPEPGYPGEPLLGLQAASAQEPGCCPGLPHLCSAQGLAPAPCLVTPSWTETASS 771
Query: 454 TGEESGSEHPPAVPMHNKRKR----PRKKSPRAHREMLESAVLPPEDMSQSGPSGSHPQG 509
G +HP A P PR P E A LP E+ S + P
Sbjct: 772 -----GGDHPQAEPKLATEAEGTTGPRLPLPSVPSPSQEGAPLPSEEASAPDAPDALPDS 826
Query: 510 PRGSPTGGAQLLKRKRKLGVVPVNGSGLSTPAWPPLQQEGPPTGPAEGANSHTT------ 563
P + G +K L NGS S P ++ G + T+
Sbjct: 827 PTPATGGEVSAIKLASAL-----NGSSSSPEVEAPSSEDEDTAEATSGIFTDTSSDGLQA 881
Query: 564 -----LPQRRRLQKKKAGPGSLELCGLPS 587
+P R LQK+ P SL+ +PS
Sbjct: 882 RRPDVVPAFRSLQKQVGTPDSLDSLDIPS 910
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 39.7 bits (91), Expect = 0.010
Identities = 42/175 (24%), Positives = 65/175 (37%), Gaps = 16/175 (9%)
Query: 362 KHKKKGNKLLEKT-NLEKEK------GSRVFCVEEEDSES-SLQKRRRKKKKKHHLQPEN 413
+H+ + +K K N EK++ G R S S SL + L P++
Sbjct: 223 RHRSRSSKCKRKEKNKEKKRPHTESPGRRSHRHSSGSSHSPSLSSHYSDSRSPSRLSPKH 282
Query: 414 PGPGGAAPSLEQNRGREPEASGLKALKARVAEPGAEATSSTGEESGSEHPPAVPMHNKRK 473
G S + R P SG + + +G+ SG+ H+
Sbjct: 283 RDEGRKTGSQRSSGSRSPSPSGGSGWGS------PQRNGGSGQRSGAHGGRPGSAHSPPD 336
Query: 474 RPRKKSPRAHREMLESAVLPPEDMSQSGPSGSHP--QGPRGSPTGGAQLLKRKRK 526
+P SPR + +A PP +S S P QG G GGA +R+R+
Sbjct: 337 KPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRR 391
Score = 32.3 bits (72), Expect = 1.7
Identities = 68/295 (23%), Positives = 101/295 (34%), Gaps = 49/295 (16%)
Query: 362 KHKKKGNKLLEKTNLEKEKGSRVFCVEEEDSESSLQKRRRKKK--KKHHLQPENPGPGGA 419
K KKKG + + +K + +E E S S R+KKK KKH + G
Sbjct: 171 KKKKKGG---HRRSRKKRR------LESECSCGSSSPLRKKKKSVKKHRRDRSDSG---- 217
Query: 420 APSLEQNRGREPEASGLKALKARVAEPGAEATSSTG-----EESGSEHPPAVPMHNKRKR 474
+ + R S K + E T S G SGS H P++ H R
Sbjct: 218 ----SRRKRRHRSRSSKCKRKEKNKEKKRPHTESPGRRSHRHSSGSSHSPSLSSHYSDSR 273
Query: 475 -PRKKSPRAHREMLESAVLPPEDMSQSGPSGSHPQGPRGSPTGGAQLLKRKRKLGVVPVN 533
P + SP+ E ++ PSG GSP +R G P
Sbjct: 274 SPSRLSPKHRDEGRKTGSQRSSGSRSPSPSGG---SGWGSPQRNGGSGQRSGAHGGRP-- 328
Query: 534 GSGLSTPAWPPLQQ--------EGPPTGPAEGANSHTTLPQRRRLQKKKAGPGSLELCGL 585
GS S P P PT PA G S P R + G G
Sbjct: 329 GSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKES----PSPRSAPSSQGRGG--RAAGG 382
Query: 586 PSQKTASLKKRKKMRVMSNLVEHNGVLESEAGQPQALGSSGTCSSLKKQKLRAES 640
++ ++R++ R ++ G +P+ G+ SL + + ++S
Sbjct: 383 AGRRRRRRRRRRRSRSSASAPRRRG-----RRRPRPAPPRGSSRSLSRARSSSDS 432
Score = 30.4 bits (67), Expect = 6.4
Identities = 65/325 (20%), Positives = 109/325 (33%), Gaps = 45/325 (13%)
Query: 412 ENPGPGGAAPSLEQNRGREPEASGLKALKARVAEPGAEATSSTGEESGSEHPPAVPMHNK 471
E+P P +APS + GR +G + + R + S+ P
Sbjct: 362 ESPSPR-SAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASA-------------PRRRG 407
Query: 472 RKRPRKKSPRAHREMLESAVLPPEDMSQSGPSGSHPQGPRGSPTGGAQLLKRKRKLGVVP 531
R+RPR PR L A + S G G P+ GG ++R P
Sbjct: 408 RRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKERPPRARP 467
Query: 532 VNGSGLSTPAWPPLQQEGPPTGPAEGANSHTTLPQRRRLQKKKAGPGSLELCGLPSQKTA 591
+ S P G GP ++S + P R ++ S +
Sbjct: 468 ASTS-------PSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSRSAEKRPHSP 520
Query: 592 SLKKRKKMRVMSNLVEHNGVLESEAGQPQALGSSGTCSSLKKQKLRAESDFVKFDTPFLP 651
S K + + SEA +A S + S ++K++ D+P
Sbjct: 521 SRSPSPKKPLSRDKDGEGRARHSEAEATRARRRSRSYSPIRKRRR---------DSPSFM 571
Query: 652 KPLFFRRAKSSTATHPPGPAVQLNKTPSSSKKVTFGLNRNMTAEFKKTDKSILVSPTGPS 711
+P RR S+ P +PSSS +++++ S SP G S
Sbjct: 572 EP---RRITSARKR----PIPYYRPSPSSSSSC-------LSSDYSTRSHSRSPSP-GHS 616
Query: 712 RVAFDPEQKPLHGVLKTPTSSPASS 736
++ ++P+ +P+ S
Sbjct: 617 HGSYSSRSHGTRSRTRSPSRTPSPS 641
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.130 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,888,319
Number of Sequences: 37866
Number of extensions: 1770036
Number of successful extensions: 9596
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 614
Number of HSP's that attempted gapping in prelim test: 8167
Number of HSP's gapped (non-prelim): 1809
length of query: 758
length of database: 18,247,518
effective HSP length: 110
effective length of query: 648
effective length of database: 14,082,258
effective search space: 9125303184
effective search space used: 9125303184
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.