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Search of human proteins with 5730031
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5730031 secretory carrier membrane protein 2 [Homo sapiens]
(329 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5730031 secretory carrier membrane protein 2 [Homo sapiens] 673 0.0
gi|116256358 secretory carrier membrane protein 1 [Homo sapiens] 371 e-103
gi|16445419 secretory carrier membrane protein 3 isoform 1 [Homo... 335 3e-92
gi|16445421 secretory carrier membrane protein 3 isoform 2 [Homo... 321 5e-88
gi|20373183 secretory carrier membrane protein 5 [Homo sapiens] 229 3e-60
gi|17738287 secretory carrier membrane protein 4 [Homo sapiens] 209 4e-54
gi|58331266 WD repeat domain 59 [Homo sapiens] 38 0.014
gi|42475558 SMG-7 homolog isoform 1 [Homo sapiens] 36 0.041
gi|42476066 SMG-7 homolog isoform 4 [Homo sapiens] 36 0.041
gi|42476070 SMG-7 homolog isoform 2 [Homo sapiens] 36 0.041
gi|149773456 hypothetical protein LOC643314 [Homo sapiens] 33 0.27
gi|19923191 minichromosome maintenance complex component 3 assoc... 33 0.27
gi|109150435 ankyrin repeat and zinc finger domain containing 1 ... 33 0.35
gi|109150425 ankyrin repeat and zinc finger domain containing 1 ... 33 0.35
gi|20070103 TEA domain family member 2 [Homo sapiens] 33 0.46
gi|21553315 phosphatidylinositol glycan anchor biosynthesis, cla... 32 0.60
gi|51702222 SPT2, Suppressor of Ty, domain containing 1 [Homo sa... 32 0.60
gi|112790163 metal-regulatory transcription factor 1 [Homo sapiens] 32 0.78
gi|62422561 p21-activated kinase 4 isoform 2 [Homo sapiens] 32 0.78
gi|62422563 p21-activated kinase 4 isoform 2 [Homo sapiens] 32 0.78
gi|157042792 coiled-coil domain containing 64B [Homo sapiens] 32 0.78
gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens] 32 1.0
gi|239758038 PREDICTED: mucin 3A, cell surface associated, parti... 31 1.3
gi|239749213 PREDICTED: mucin 3B, cell surface associated, parti... 31 1.3
gi|239743291 PREDICTED: mucin 3A, intestinal [Homo sapiens] 31 1.3
gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens] 31 1.3
gi|53793679 olfactory receptor, family 4, subfamily B, member 1 ... 31 1.3
gi|52317245 olfactory receptor, family 4, subfamily D, member 6 ... 31 1.3
gi|115430237 spectrin, beta, non-erythrocytic 4 isoform sigma1 [... 31 1.3
gi|8659574 transcription factor E3 [Homo sapiens] 31 1.7
>gi|5730031 secretory carrier membrane protein 2 [Homo sapiens]
Length = 329
Score = 673 bits (1736), Expect = 0.0
Identities = 329/329 (100%), Positives = 329/329 (100%)
Query: 1 MSAFDTNPFADPVDVNPFQDPSVTQLTNAPQGGLAEFNPFSETNAATTVPVTQLPGSSQP 60
MSAFDTNPFADPVDVNPFQDPSVTQLTNAPQGGLAEFNPFSETNAATTVPVTQLPGSSQP
Sbjct: 1 MSAFDTNPFADPVDVNPFQDPSVTQLTNAPQGGLAEFNPFSETNAATTVPVTQLPGSSQP 60
Query: 61 AVLQPSVEPTQPTPQAVVSAAQAGLLRQQEELDRKAAELERKERELQNTVANLHVRQNNW 120
AVLQPSVEPTQPTPQAVVSAAQAGLLRQQEELDRKAAELERKERELQNTVANLHVRQNNW
Sbjct: 61 AVLQPSVEPTQPTPQAVVSAAQAGLLRQQEELDRKAAELERKERELQNTVANLHVRQNNW 120
Query: 121 PPLPSWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFSGNSSK 180
PPLPSWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFSGNSSK
Sbjct: 121 PPLPSWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFSGNSSK 180
Query: 181 GVDFGLSILWFLIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYIIQLVGIP 240
GVDFGLSILWFLIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYIIQLVGIP
Sbjct: 181 GVDFGLSILWFLIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYIIQLVGIP 240
Query: 241 GLGDSGWIAALSTLDNHSLAISVIMMVVAGFFTLCAVLSVFLLQRVHSLYRRTGASFQQA 300
GLGDSGWIAALSTLDNHSLAISVIMMVVAGFFTLCAVLSVFLLQRVHSLYRRTGASFQQA
Sbjct: 241 GLGDSGWIAALSTLDNHSLAISVIMMVVAGFFTLCAVLSVFLLQRVHSLYRRTGASFQQA 300
Query: 301 QEEFSQGIFSSRTFHRAASSAAQGAFQGN 329
QEEFSQGIFSSRTFHRAASSAAQGAFQGN
Sbjct: 301 QEEFSQGIFSSRTFHRAASSAAQGAFQGN 329
>gi|116256358 secretory carrier membrane protein 1 [Homo sapiens]
Length = 338
Score = 371 bits (953), Expect = e-103
Identities = 182/340 (53%), Positives = 250/340 (73%), Gaps = 15/340 (4%)
Query: 1 MSAFDTNPFADPVDVNPFQDPSVTQLTNAPQGGLAEFNPFSETNAATT--VPVTQLPGSS 58
MS FD+NPFADP NPF+DPSVTQ+T GL E+NPFS++ V + +P ++
Sbjct: 1 MSDFDSNPFADPDLNNPFKDPSVTQVTRNVPPGLDEYNPFSDSRTPPPGGVKMPNVP-NT 59
Query: 59 QPAVLQPSVEPTQPTPQAVVSA-AQAGLLRQQEELDRKAAELERKERELQNTVANLHVRQ 117
QPA+++P+ E T A A AQA LL++QEEL+RKAAEL+R+ERE+QN + H R+
Sbjct: 60 QPAIMKPTEEHPAYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNL--SQHGRK 117
Query: 118 NNWPPLPSWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFSGN 177
NNWPPLPS PV PCFYQDFS +IP ++Q+ K++YYLWM H+VTLFLN+ CLAWF +
Sbjct: 118 NNWPPLPSNFPVGPCFYQDFSVDIPVEFQKTVKLMYYLWMFHAVTLFLNIFGCLAWFCVD 177
Query: 178 SSKGVDFGLSILWFLIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYIIQLV 237
S++ VDFGLSILWFL+FTPC+F+CWYRP+Y AFRSD+SF FFVFFFV+ CQ ++++Q
Sbjct: 178 SARAVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAVHVLQAA 237
Query: 238 GIPGLGDSGWIAALSTLDNHSLAISVIMMVVAGFFTLCAVLSVFLLQRVHSLYRRTGASF 297
G G+ GWI++L+ L N ++ + ++M+++A FT AV+S+ + ++VH LYR TGASF
Sbjct: 238 GFHNWGNCGWISSLTGL-NQNIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRTTGASF 296
Query: 298 QQAQEEFSQGIFSSRTFH--------RAASSAAQGAFQGN 329
++AQ+EF+ G+ S++T AASSAAQ AF+GN
Sbjct: 297 EKAQQEFATGVMSNKTVQTAAANAASTAASSAAQNAFKGN 336
>gi|16445419 secretory carrier membrane protein 3 isoform 1 [Homo
sapiens]
Length = 347
Score = 335 bits (860), Expect = 3e-92
Identities = 178/333 (53%), Positives = 237/333 (71%), Gaps = 16/333 (4%)
Query: 7 NPFADPVDV-NPFQDPSVTQLTNAPQ-GGLAEFNPFS--ETNAATTVPV-TQLPGSSQPA 61
NPFA+P ++ NPFQDP+V Q + Q L +NPF E A P LP S P+
Sbjct: 9 NPFAEPSELDNPFQDPAVIQHRPSRQYATLDVYNPFETREPPPAYEPPAPAPLPPPSAPS 68
Query: 62 VLQPS--VEPTQP------TPQAVVSAAQAGLLRQQEELDRKAAELERKERELQNT-VAN 112
LQPS + PT+P + QA +AA A LL++QEEL+RKA EL+R+ERELQ+ +
Sbjct: 69 -LQPSRKLSPTEPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERELQHAALGG 127
Query: 113 LHVRQNNWPPLPSWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLA 172
RQNNWPPLPS+CPV+PCF+QD S EIP ++Q+ +YYLWM ++ L LN LACLA
Sbjct: 128 TATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLACLA 187
Query: 173 WFSGNSSKGVDFGLSILWFLIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIY 232
F ++ G FGLSILW L+FTPC+F+CWYRP+YKAFRSD+SF+FFVFFF+FF Q ++
Sbjct: 188 SFCVETNNGAGFGLSILWVLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDVLF 247
Query: 233 IIQLVGIPGLGDSGWIAALSTLDNHSLAISVIMMVVAGFFTLCAVLSVFLLQRVHSLYRR 292
++Q +GIPG G SGWI+AL + + A+SV+M++VA FT AVL + +L+R+HSLYRR
Sbjct: 248 VLQAIGIPGWGFSGWISAL-VVPKGNTAVSVLMLLVALLFTGIAVLGIVMLKRIHSLYRR 306
Query: 293 TGASFQQAQEEFSQGIFSSRTFHRAASSAAQGA 325
TGASFQ+AQ+EF+ G+FS+ AA++AA GA
Sbjct: 307 TGASFQKAQQEFAAGVFSNPAVRTAAANAAAGA 339
>gi|16445421 secretory carrier membrane protein 3 isoform 2 [Homo
sapiens]
Length = 321
Score = 321 bits (823), Expect = 5e-88
Identities = 168/329 (51%), Positives = 224/329 (68%), Gaps = 34/329 (10%)
Query: 7 NPFADPVDV-NPFQDPSVTQLTNAPQGGLAEFNPFSETNAATTVPVTQLPGSSQPAVLQP 65
NPFA+P ++ NPFQ P P E A +P P LQP
Sbjct: 9 NPFAEPSELDNPFQPP-----------------PAYEPPAPAPLPPPSAPS------LQP 45
Query: 66 S--VEPTQP------TPQAVVSAAQAGLLRQQEELDRKAAELERKERELQNT-VANLHVR 116
S + PT+P + QA +AA A LL++QEEL+RKA EL+R+ERELQ+ + R
Sbjct: 46 SRKLSPTEPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERELQHAALGGTATR 105
Query: 117 QNNWPPLPSWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFSG 176
QNNWPPLPS+CPV+PCF+QD S EIP ++Q+ +YYLWM ++ L LN LACLA F
Sbjct: 106 QNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLACLASFCV 165
Query: 177 NSSKGVDFGLSILWFLIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYIIQL 236
++ G FGLSILW L+FTPC+F+CWYRP+YKAFRSD+SF+FFVFFF+FF Q ++++Q
Sbjct: 166 ETNNGAGFGLSILWVLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDVLFVLQA 225
Query: 237 VGIPGLGDSGWIAALSTLDNHSLAISVIMMVVAGFFTLCAVLSVFLLQRVHSLYRRTGAS 296
+GIPG G SGWI+AL + + A+SV+M++VA FT AVL + +L+R+HSLYRRTGAS
Sbjct: 226 IGIPGWGFSGWISAL-VVPKGNTAVSVLMLLVALLFTGIAVLGIVMLKRIHSLYRRTGAS 284
Query: 297 FQQAQEEFSQGIFSSRTFHRAASSAAQGA 325
FQ+AQ+EF+ G+FS+ AA++AA GA
Sbjct: 285 FQKAQQEFAAGVFSNPAVRTAAANAAAGA 313
>gi|20373183 secretory carrier membrane protein 5 [Homo sapiens]
Length = 235
Score = 229 bits (584), Expect = 3e-60
Identities = 107/211 (50%), Positives = 144/211 (68%), Gaps = 2/211 (0%)
Query: 118 NNWPPLPSWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFSGN 177
NN+PPLP + P+KPCFYQDF +IP + + K LYYLWML+SVTL +NL+ CLAW G
Sbjct: 6 NNFPPLPKFIPLKPCFYQDFEADIPPQHVSMTKRLYYLWMLNSVTLAVNLVGCLAWLIGG 65
Query: 178 SSKGVDFGLSILWFLIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYIIQLV 237
+FGL+ LW ++FTPC+++CW+RPIYKAF++D+SFSF FFF F Q+ I IIQ V
Sbjct: 66 GG-ATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISIIQAV 124
Query: 238 GIPGLGDSGWIAALSTLDNHSLAISVIMMVVAGFFTLCAVLSVFLLQRVHSLYRRTGASF 297
GIPG G GWIA +S ++ +V+M++ FT+ AV S L VH YR +G SF
Sbjct: 125 GIPGWGVCGWIATISFFGT-NIGSAVVMLIPTVMFTVMAVFSFIALSMVHKFYRGSGGSF 183
Query: 298 QQAQEEFSQGIFSSRTFHRAASSAAQGAFQG 328
+AQEE++ G + + +AA +AA GA QG
Sbjct: 184 SKAQEEWTTGAWKNPHVQQAAQNAAMGAAQG 214
>gi|17738287 secretory carrier membrane protein 4 [Homo sapiens]
Length = 229
Score = 209 bits (531), Expect = 4e-54
Identities = 97/215 (45%), Positives = 143/215 (66%), Gaps = 8/215 (3%)
Query: 116 RQNNWPPLPSWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFS 175
++NN+PPLP + PVKPCFYQ+FS EIP ++Q + K +Y LWM + TL +NL+ACLAW+
Sbjct: 4 KENNFPPLPKFIPVKPCFYQNFSDEIPVEHQVLVKRIYRLWMFYCATLGVNLIACLAWWI 63
Query: 176 GNSSKGVDFGLSILWFLIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYIIQ 235
G S G +FGL+ +W L+FTPC ++CW+RP+YKAFR+D+SF+F FFF+F Q + +IQ
Sbjct: 64 GGGS-GTNFGLAFVWLLLFTPCGYVCWFRPVYKAFRADSSFNFMAFFFIFGAQFVLTVIQ 122
Query: 236 LVGIPGLGDSGWIAALSTLDNHSLAISVIMMVVAGFFTLCAVLSVFLLQRVHSLYRRTGA 295
+G G G GW++A+ +S +V+M++ A F++ A + + +VH +YR G
Sbjct: 123 AIGFSGWGACGWLSAIGFF-QYSPGAAVVMLLPAIMFSVSAAMMAIAIMKVHRIYRGAGG 181
Query: 296 SFQQAQEEFSQGIFSSRTFHRAASSAAQ-GAFQGN 329
SFQ+AQ E++ G T+ S AQ F GN
Sbjct: 182 SFQKAQTEWNTG-----TWRNPPSREAQYNNFSGN 211
>gi|58331266 WD repeat domain 59 [Homo sapiens]
Length = 974
Score = 37.7 bits (86), Expect = 0.014
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 6 TNPFADPVDVNPFQDPSVTQLTNAPQGGLAEFN-PFSETNAATTVPVTQLPGSSQPAVLQ 64
+NPFA P V P P+ ++T A G + N PF T+ A L ++P +
Sbjct: 503 SNPFALPNSVTP-PLPTFARVTTA-YGSYQDANIPFPRTSGARFCGAGYLVYFTRPMTMH 560
Query: 65 PSVEPTQPTPQAV--VSAAQAGLL 86
+V PT+PTP+++ +SA GL+
Sbjct: 561 RAVSPTEPTPRSLSALSAYHTGLI 584
>gi|42475558 SMG-7 homolog isoform 1 [Homo sapiens]
Length = 1137
Score = 36.2 bits (82), Expect = 0.041
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 28 NAPQGGLAEFNPFSETNAATTVPVTQLPGSSQPAVLQPSVE-PTQPTPQAVVSAAQAGLL 86
N Q G P+S+ + P+ Q P SQP QP P QPT Q+ S Q L
Sbjct: 706 NQVQAGKQSHIPYSQQRPSGPGPMNQGPQQSQPPSQQPLTSLPAQPTAQS-TSQLQVQAL 764
Query: 87 RQQEELDRKA 96
QQ++ KA
Sbjct: 765 TQQQQSPTKA 774
>gi|42476066 SMG-7 homolog isoform 4 [Homo sapiens]
Length = 1049
Score = 36.2 bits (82), Expect = 0.041
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 28 NAPQGGLAEFNPFSETNAATTVPVTQLPGSSQPAVLQPSVE-PTQPTPQAVVSAAQAGLL 86
N Q G P+S+ + P+ Q P SQP QP P QPT Q+ S Q L
Sbjct: 618 NQVQAGKQSHIPYSQQRPSGPGPMNQGPQQSQPPSQQPLTSLPAQPTAQS-TSQLQVQAL 676
Query: 87 RQQEELDRKA 96
QQ++ KA
Sbjct: 677 TQQQQSPTKA 686
>gi|42476070 SMG-7 homolog isoform 2 [Homo sapiens]
Length = 1091
Score = 36.2 bits (82), Expect = 0.041
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 28 NAPQGGLAEFNPFSETNAATTVPVTQLPGSSQPAVLQPSVE-PTQPTPQAVVSAAQAGLL 86
N Q G P+S+ + P+ Q P SQP QP P QPT Q+ S Q L
Sbjct: 660 NQVQAGKQSHIPYSQQRPSGPGPMNQGPQQSQPPSQQPLTSLPAQPTAQS-TSQLQVQAL 718
Query: 87 RQQEELDRKA 96
QQ++ KA
Sbjct: 719 TQQQQSPTKA 728
>gi|149773456 hypothetical protein LOC643314 [Homo sapiens]
Length = 1427
Score = 33.5 bits (75), Expect = 0.27
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 8 PFADPVDVNPFQDPSVTQLTNAPQGGLAEF--NPFSETNAATTVPVTQLPGSSQPAVLQP 65
P A + F P+ + T+ LA NP T+ A VP + P SS AVL P
Sbjct: 1205 PAAMVATLEEFTSPAASVPTSEEPASLAAAVSNPEEPTSPAAAVPTLEEPTSSAAAVLTP 1264
Query: 66 ----SVEPTQPTPQAVVSAAQA 83
S + PTP+ S A A
Sbjct: 1265 EELSSPAASVPTPEEPASPAAA 1286
>gi|19923191 minichromosome maintenance complex component 3 associated
protein [Homo sapiens]
Length = 1980
Score = 33.5 bits (75), Expect = 0.27
Identities = 21/76 (27%), Positives = 36/76 (47%)
Query: 28 NAPQGGLAEFNPFSETNAATTVPVTQLPGSSQPAVLQPSVEPTQPTPQAVVSAAQAGLLR 87
+AP L + P + PV L S P++ Q SV+P P P+ V + L +
Sbjct: 1023 DAPLSSLPQSLPAPAPSPVPLPPVLALTPSVAPSLFQLSVQPEPPPPEPVPMYSDEDLAQ 1082
Query: 88 QQEELDRKAAELERKE 103
+EL ++A + + +E
Sbjct: 1083 VVDELIQEALQRDCEE 1098
>gi|109150435 ankyrin repeat and zinc finger domain containing 1
[Homo sapiens]
Length = 726
Score = 33.1 bits (74), Expect = 0.35
Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 36 EFNPFSETNA-ATTVPVTQLPGSSQPAVLQPSVEPTQPTPQAVVSAAQAGLLRQQEELDR 94
EF F E N A Q+PG L P +E Q T + AA+ RQ+EE +
Sbjct: 583 EFRRFMEKNPDAYDYNKAQVPGP-----LTPEMEARQATRKREQKAAR----RQREEQQQ 633
Query: 95 KAAELERKERELQNTVANLHVRQ 117
+ E E +ERE Q A L R+
Sbjct: 634 RQQEQEEREREEQRRFAALSDRE 656
>gi|109150425 ankyrin repeat and zinc finger domain containing 1
[Homo sapiens]
Length = 726
Score = 33.1 bits (74), Expect = 0.35
Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 36 EFNPFSETNA-ATTVPVTQLPGSSQPAVLQPSVEPTQPTPQAVVSAAQAGLLRQQEELDR 94
EF F E N A Q+PG L P +E Q T + AA+ RQ+EE +
Sbjct: 583 EFRRFMEKNPDAYDYNKAQVPGP-----LTPEMEARQATRKREQKAAR----RQREEQQQ 633
Query: 95 KAAELERKERELQNTVANLHVRQ 117
+ E E +ERE Q A L R+
Sbjct: 634 RQQEQEEREREEQRRFAALSDRE 656
>gi|20070103 TEA domain family member 2 [Homo sapiens]
Length = 447
Score = 32.7 bits (73), Expect = 0.46
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 28 NAPQGGLAEFNPFSET--NAATTVPVTQLPGSSQPAVLQPSVEPTQPTPQA 76
+ P + + PFS+T + T P T LPG P L P PT P+P A
Sbjct: 168 SGPPWNVPDVKPFSQTPFTLSLTPPSTDLPGYEPPQALSPLPPPT-PSPPA 217
>gi|21553315 phosphatidylinositol glycan anchor biosynthesis, class
M [Homo sapiens]
Length = 423
Score = 32.3 bits (72), Expect = 0.60
Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 18/101 (17%)
Query: 139 TEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFSGNSSKGVDFGLSILWFLIFTPCA 198
T I + ++C Y+LW L + L + L+ + W L +LWF+
Sbjct: 321 TSIFVTFNKVCTSQYFLWYLCLLPLVMPLVR-MPWKRA-------VVLLMLWFI-----G 367
Query: 199 FLCWYRPIY-KAFRSDNSFSFF----VFFFVFFCQIGIYII 234
W P Y F+ N+F F +FF + C I I II
Sbjct: 368 QAMWLAPAYVLEFQGKNTFLFIWLAGLFFLLINCSILIQII 408
>gi|51702222 SPT2, Suppressor of Ty, domain containing 1 [Homo
sapiens]
Length = 685
Score = 32.3 bits (72), Expect = 0.60
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 51 VTQLPGSSQPAVLQPSVEPTQPTPQAVVSAAQAGLLRQQEELDRKAAELERKEREL 106
V +P AV P +P Q+ +A QA L R++EEL RKA E +R++ EL
Sbjct: 16 VNNVPKRYSLAVGPPKKDPKVKGVQS--AAVQAFLKRKEEELRRKALEEKRRKEEL 69
>gi|112790163 metal-regulatory transcription factor 1 [Homo sapiens]
Length = 753
Score = 32.0 bits (71), Expect = 0.78
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 13 VDVNPFQDPSVTQLTNAPQGGLAEFNPFSETNAATTVPVTQLPGSSQ-PAVLQPSVEPTQ 71
+ +P Q S+T+ N +++ P + +A+ ++P+ PG S+ P L P+ P+
Sbjct: 383 IQEDPQQTASLTESFNGDAESVSDVPPSTGNSASLSLPLVLQPGLSEPPQPLLPASAPSA 442
Query: 72 PTP 74
P P
Sbjct: 443 PPP 445
>gi|62422561 p21-activated kinase 4 isoform 2 [Homo sapiens]
Length = 438
Score = 32.0 bits (71), Expect = 0.78
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 2 SAFDTNPFADPVDVNPFQD--PSVTQLTNAPQGGLAEFNPFSETNAATTVPVTQLPGSSQ 59
SA P DP + Q P AP G A +++++++ P T+ G+
Sbjct: 46 SARRPKPLVDPACITSIQPGAPKGEPHDVAPNGPSAGGLAIPQSSSSSSRPPTRARGAPS 105
Query: 60 PAVLQPSVEPTQPTPQAVVSAAQA 83
P VL P Q P A AA A
Sbjct: 106 PGVLGPHASEPQLAPPACTPAAPA 129
>gi|62422563 p21-activated kinase 4 isoform 2 [Homo sapiens]
Length = 438
Score = 32.0 bits (71), Expect = 0.78
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 2 SAFDTNPFADPVDVNPFQD--PSVTQLTNAPQGGLAEFNPFSETNAATTVPVTQLPGSSQ 59
SA P DP + Q P AP G A +++++++ P T+ G+
Sbjct: 46 SARRPKPLVDPACITSIQPGAPKGEPHDVAPNGPSAGGLAIPQSSSSSSRPPTRARGAPS 105
Query: 60 PAVLQPSVEPTQPTPQAVVSAAQA 83
P VL P Q P A AA A
Sbjct: 106 PGVLGPHASEPQLAPPACTPAAPA 129
>gi|157042792 coiled-coil domain containing 64B [Homo sapiens]
Length = 508
Score = 32.0 bits (71), Expect = 0.78
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 47 TTVPVTQLPGSSQPA----VLQPSVEPTQPTPQAVVSAAQAGLLRQQEELDRKAAELERK 102
T P T+ S QP+ +L+P + T +P ++ + + + Q+E+ + AEL+
Sbjct: 321 TRSPKTRKASSPQPSPPEEILEPPKKRTSLSPAEILEEKEVEVAKLQDEISLQQAELQSL 380
Query: 103 ERELQ 107
ELQ
Sbjct: 381 REELQ 385
>gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens]
Length = 1243
Score = 31.6 bits (70), Expect = 1.0
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 12/64 (18%)
Query: 7 NPFADPVDVNPFQDPSVTQLTNAPQGGLAEFNPFSETNAATTVPVTQLPGSSQPAVLQPS 66
+P + V NP P+ + L PFS + VP++Q P SS P P+
Sbjct: 844 SPISSQVSSNPSPHPTSSPL------------PFSSSTPEFPVPLSQCPWSSLPTTSPPT 891
Query: 67 VEPT 70
PT
Sbjct: 892 FSPT 895
>gi|239758038 PREDICTED: mucin 3A, cell surface associated, partial
[Homo sapiens]
Length = 909
Score = 31.2 bits (69), Expect = 1.3
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 47 TTVPVTQLPGSSQPAVLQPSVEPTQPTP 74
+T+P+T P SS P +L+ S + T P+P
Sbjct: 776 STIPLTMKPSSSLPTILRTSSKSTHPSP 803
>gi|239749213 PREDICTED: mucin 3B, cell surface associated, partial
[Homo sapiens]
Length = 1063
Score = 31.2 bits (69), Expect = 1.3
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 47 TTVPVTQLPGSSQPAVLQPSVEPTQPTP 74
+T+P+T P SS P +L+ S + T P+P
Sbjct: 627 STIPLTMKPSSSLPTILRTSSKSTHPSP 654
>gi|239743291 PREDICTED: mucin 3A, intestinal [Homo sapiens]
Length = 1486
Score = 31.2 bits (69), Expect = 1.3
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 47 TTVPVTQLPGSSQPAVLQPSVEPTQPTP 74
+T+P+T P SS P +L+ S + T P+P
Sbjct: 1050 STIPLTMKPSSSLPTILRTSSKSTHPSP 1077
>gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens]
Length = 1132
Score = 31.2 bits (69), Expect = 1.3
Identities = 18/56 (32%), Positives = 25/56 (44%)
Query: 48 TVPVTQLPGSSQPAVLQPSVEPTQPTPQAVVSAAQAGLLRQQEELDRKAAELERKE 103
T+P Q G QP QP +P TP+ V ++Q + E R+ E E E
Sbjct: 185 TLPYLQCRGGPQPQHSQPPPQPPAVTPEPVALSSQTSEPVESEAPPREPMEAEEVE 240
>gi|53793679 olfactory receptor, family 4, subfamily B, member 1
[Homo sapiens]
Length = 309
Score = 31.2 bits (69), Expect = 1.3
Identities = 37/141 (26%), Positives = 58/141 (41%), Gaps = 33/141 (23%)
Query: 145 YQRICKMLYYLWMLHSVTLFLNLLACLAWFSGNSSKGVDFGLSILWFLIFTPCAF----- 199
Y ICK L+Y+ ++ +LL +W G F SI+ L+ F
Sbjct: 121 YVAICKPLHYMNIISRQ--LCHLLVAGSWLGG-------FCHSIIQILVIIQLPFCGPNV 171
Query: 200 ----LCWYRPIYKAFRSD----------NSFSFFVFFFVFFCQIGIYIIQLVGIPGLGDS 245
C +P++K +D NS F VF F+ + YI+ LV +
Sbjct: 172 IDHYFCDLQPLFKLACTDTFMEGVIVLANSGLFSVFSFLIL--VSSYIVILVNLRNHSAE 229
Query: 246 GWIAALSTLDNHSLAISVIMM 266
G ALST +H I+V+++
Sbjct: 230 GRHKALSTCASH---ITVVIL 247
>gi|52317245 olfactory receptor, family 4, subfamily D, member 6
[Homo sapiens]
Length = 314
Score = 31.2 bits (69), Expect = 1.3
Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 20/133 (15%)
Query: 145 YQRICKMLYYLWMLHSVTLFLNLLACLAWFSGNSSKGVDFGLSILWFLIFTPC------A 198
Y I K L+Y+ M+ ++A +W SG G+ + ++ L F C A
Sbjct: 123 YLAIAKPLHYVTMMRKEVWVALVVA--SWVSG----GLHSIIQVILMLPFPFCGPNTLDA 176
Query: 199 FLCWYRPIYKAFRSDN--------SFSFFVFFFVFFCQIGIYIIQLVGIPGLGDSGWIAA 250
F C+ + K +D S + V F +G Y + LV + G A
Sbjct: 177 FYCYVLQVVKLACTDTFALELFMISNNGLVTLLWFLLLLGSYTVILVMLRSHSGEGRNKA 236
Query: 251 LSTLDNHSLAISV 263
LST +H L +++
Sbjct: 237 LSTCTSHMLVVTL 249
>gi|115430237 spectrin, beta, non-erythrocytic 4 isoform sigma1 [Homo
sapiens]
Length = 2564
Score = 31.2 bits (69), Expect = 1.3
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 53 QLPGSSQPAVLQPSVEPTQPTPQAVVSAAQAGLLRQQEELDRKAAELERKER-ELQNTV 110
++PG +PA L + E TP +A Q +++E +A EL R+ R E Q +V
Sbjct: 2197 EIPGRVEPAALPAAPEDAAETPATPAAAEQVRPRPERQESADRAEELPRRRRPERQESV 2255
>gi|8659574 transcription factor E3 [Homo sapiens]
Length = 575
Score = 30.8 bits (68), Expect = 1.7
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 47 TTVPVTQLPGSSQPAVLQPSVEPTQPTPQAVVSAAQAGLLRQQEELDRKAAELERKEREL 106
+++P++ + PA L S A+ S++ + +L +Q+ + +A E ER+ER
Sbjct: 76 SSLPISLQATPATPATLSASSSAGGSRTPAMSSSSSSRVLLRQQLMRAQAQEQERRERRE 135
Query: 107 QNTVANLHVRQNNWPPLPSWCPVKP 131
Q A P PS P P
Sbjct: 136 QAAAA----------PFPSPAPASP 150
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.136 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,524,464
Number of Sequences: 37866
Number of extensions: 563841
Number of successful extensions: 4399
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 4274
Number of HSP's gapped (non-prelim): 157
length of query: 329
length of database: 18,247,518
effective HSP length: 103
effective length of query: 226
effective length of database: 14,347,320
effective search space: 3242494320
effective search space used: 3242494320
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.