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Search of human proteins with 5729772
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5729772 ceroid-lipofuscinosis, neuronal 5 [Homo sapiens]
(407 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5729772 ceroid-lipofuscinosis, neuronal 5 [Homo sapiens] 865 0.0
gi|7705851 coiled-coil-helix-coiled-coil-helix domain containing... 36 0.055
gi|110611914 progesterone receptor [Homo sapiens] 35 0.16
gi|239752710 PREDICTED: similar to coiled-coil-helix-coiled-coil... 35 0.16
gi|239747238 PREDICTED: similar to coiled-coil-helix-coiled-coil... 35 0.16
gi|239741059 PREDICTED: similar to coiled-coil-helix-coiled-coil... 35 0.16
gi|12707580 paired-like homeobox 2b [Homo sapiens] 32 1.0
gi|4758156 diacylglycerol kinase, iota [Homo sapiens] 32 1.0
gi|115430209 phosphatase and actin regulator 4 isoform 2 [Homo s... 32 1.0
gi|115430211 phosphatase and actin regulator 4 isoform 1 [Homo s... 32 1.0
gi|208022661 hypothetical protein LOC57701 [Homo sapiens] 32 1.3
gi|222418613 integrin alpha 7 isoform 1 precursor [Homo sapiens] 31 1.8
gi|222418611 integrin alpha 7 isoform 2 precursor [Homo sapiens] 31 1.8
gi|169214061 PREDICTED: hypothetical protein [Homo sapiens] 31 1.8
gi|169214437 PREDICTED: hypothetical protein [Homo sapiens] 31 1.8
gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo ... 31 1.8
gi|239748022 PREDICTED: hypothetical protein XP_002346495 [Homo ... 31 1.8
gi|169213353 PREDICTED: hypothetical protein [Homo sapiens] 31 1.8
gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo ... 31 1.8
gi|217330584 stimulated by retinoic acid gene 6 homolog isoform ... 31 2.3
gi|217330582 stimulated by retinoic acid gene 6 homolog isoform ... 31 2.3
gi|217330580 stimulated by retinoic acid gene 6 homolog isoform ... 31 2.3
gi|217330578 stimulated by retinoic acid gene 6 homolog isoform ... 31 2.3
gi|239753457 PREDICTED: hypothetical protein XP_002345662 [Homo ... 30 3.0
gi|239741918 PREDICTED: hypothetical protein XP_002342351 [Homo ... 30 3.0
gi|116292168 KRAB A domain containing 1 [Homo sapiens] 30 3.0
gi|13994287 BTE-binding protein 4 [Homo sapiens] 30 5.1
gi|227430303 CD109 antigen isoform 3 precursor [Homo sapiens] 30 5.1
gi|77917617 hypothetical protein LOC54463 isoform 1 [Homo sapiens] 30 5.1
gi|239755004 PREDICTED: hypothetical protein [Homo sapiens] 29 6.7
>gi|5729772 ceroid-lipofuscinosis, neuronal 5 [Homo sapiens]
Length = 407
Score = 865 bits (2236), Expect = 0.0
Identities = 407/407 (100%), Positives = 407/407 (100%)
Query: 1 MRRNLRLGPSSGADAQGQGAPRPGLAAPRMLLPPASQASRGSGSTGCSLMAQEVDTAQGA 60
MRRNLRLGPSSGADAQGQGAPRPGLAAPRMLLPPASQASRGSGSTGCSLMAQEVDTAQGA
Sbjct: 1 MRRNLRLGPSSGADAQGQGAPRPGLAAPRMLLPPASQASRGSGSTGCSLMAQEVDTAQGA 60
Query: 61 EMRRGAGAARGRASWCWALALLWLAVVPGWSRVSGIPSRRHWPVPYKRFDFRPKPDPYCQ 120
EMRRGAGAARGRASWCWALALLWLAVVPGWSRVSGIPSRRHWPVPYKRFDFRPKPDPYCQ
Sbjct: 61 EMRRGAGAARGRASWCWALALLWLAVVPGWSRVSGIPSRRHWPVPYKRFDFRPKPDPYCQ 120
Query: 121 AKYTFCPTGSPIPVMEGDDDIEVFRLQAPVWEFKYGDLLGHLKIMHDAIGFRSTLTGKNY 180
AKYTFCPTGSPIPVMEGDDDIEVFRLQAPVWEFKYGDLLGHLKIMHDAIGFRSTLTGKNY
Sbjct: 121 AKYTFCPTGSPIPVMEGDDDIEVFRLQAPVWEFKYGDLLGHLKIMHDAIGFRSTLTGKNY 180
Query: 181 TMEWYELFQLGNCTFPHLRPEMDAPFWCNQGAACFFEGIDDVHWKENGTLVQVATISGNM 240
TMEWYELFQLGNCTFPHLRPEMDAPFWCNQGAACFFEGIDDVHWKENGTLVQVATISGNM
Sbjct: 181 TMEWYELFQLGNCTFPHLRPEMDAPFWCNQGAACFFEGIDDVHWKENGTLVQVATISGNM 240
Query: 241 FNQMAKWVKQDNETGIYYETWNVKASPEKGAETWFDSYDCSKFVLRTFNKLAEFGAEFKN 300
FNQMAKWVKQDNETGIYYETWNVKASPEKGAETWFDSYDCSKFVLRTFNKLAEFGAEFKN
Sbjct: 241 FNQMAKWVKQDNETGIYYETWNVKASPEKGAETWFDSYDCSKFVLRTFNKLAEFGAEFKN 300
Query: 301 IETNYTRIFLYSGEPTYLGNETSVFGPTGNKTLGLAIKRFYYPFKPHLPTKEFLLSLLQI 360
IETNYTRIFLYSGEPTYLGNETSVFGPTGNKTLGLAIKRFYYPFKPHLPTKEFLLSLLQI
Sbjct: 301 IETNYTRIFLYSGEPTYLGNETSVFGPTGNKTLGLAIKRFYYPFKPHLPTKEFLLSLLQI 360
Query: 361 FDAVIVHKQFYLFYNFEYWFLPMKFPFIKITYEEIPLPIRNKTLSGL 407
FDAVIVHKQFYLFYNFEYWFLPMKFPFIKITYEEIPLPIRNKTLSGL
Sbjct: 361 FDAVIVHKQFYLFYNFEYWFLPMKFPFIKITYEEIPLPIRNKTLSGL 407
>gi|7705851 coiled-coil-helix-coiled-coil-helix domain containing
2 [Homo sapiens]
Length = 151
Score = 36.2 bits (82), Expect = 0.055
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 3 RNLRLGPSSGADAQGQGAPRPG-LAAPRMLLPPASQASRGSGSTGCSLMAQEVDTAQGAE 61
R R+ P + Q + APRP +A P PP++ S + LMAQ TA G
Sbjct: 8 RTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMATTAAGVA 67
Query: 62 MRRGAGAARGRA 73
+ G G A
Sbjct: 68 VGSAVGHTLGHA 79
>gi|110611914 progesterone receptor [Homo sapiens]
Length = 933
Score = 34.7 bits (78), Expect = 0.16
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 2 RRNLRLGPSSGADAQGQGAPRPGLAAPRMLLPPASQASRGSGS---TGCSLMAQEVDTAQ 58
R ++G SSG A + PR GL+ R LL PAS++ SG+ A EV+
Sbjct: 167 RSGCKVGDSSGTAAAHKVLPR-GLSPARQLLLPASESPHWSGAPVKPSPQAAAVEVEEED 225
Query: 59 GAEMRRGAG 67
G+E AG
Sbjct: 226 GSESEESAG 234
>gi|239752710 PREDICTED: similar to
coiled-coil-helix-coiled-coil-helix domain containing 2
[Homo sapiens]
Length = 184
Score = 34.7 bits (78), Expect = 0.16
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 6 RLGPSSGADAQGQGAPRPG-LAAPRMLLPPASQASRGSGSTGCSLMAQEVDTAQGAEMRR 64
R+ P + Q + APRP +A P PP++ S + LMAQ TA G +
Sbjct: 44 RMAPPASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSAAAPRQPGLMAQMATTAAGVAVGS 103
Query: 65 GAGAARGRA 73
G G A
Sbjct: 104 AVGHILGHA 112
>gi|239747238 PREDICTED: similar to
coiled-coil-helix-coiled-coil-helix domain containing 2
isoform 3 [Homo sapiens]
Length = 184
Score = 34.7 bits (78), Expect = 0.16
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 6 RLGPSSGADAQGQGAPRPG-LAAPRMLLPPASQASRGSGSTGCSLMAQEVDTAQGAEMRR 64
R+ P + Q + APRP +A P PP++ S + LMAQ TA G +
Sbjct: 44 RMAPPASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSAAAPRQPGLMAQMATTAAGVAVGS 103
Query: 65 GAGAARGRA 73
G G A
Sbjct: 104 AVGHILGHA 112
>gi|239741059 PREDICTED: similar to
coiled-coil-helix-coiled-coil-helix domain containing 2
isoform 3 [Homo sapiens]
Length = 184
Score = 34.7 bits (78), Expect = 0.16
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 6 RLGPSSGADAQGQGAPRPG-LAAPRMLLPPASQASRGSGSTGCSLMAQEVDTAQGAEMRR 64
R+ P + Q + APRP +A P PP++ S + LMAQ TA G +
Sbjct: 44 RMAPPASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSAAAPRQPGLMAQMATTAAGVAVGS 103
Query: 65 GAGAARGRA 73
G G A
Sbjct: 104 AVGHILGHA 112
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 32.0 bits (71), Expect = 1.0
Identities = 26/89 (29%), Positives = 30/89 (33%), Gaps = 10/89 (11%)
Query: 9 PSSGADAQGQGAPRPGLAAPRMLLPPASQASRGSGSTGCSLMAQEVDTAQGAEMRRGAGA 68
PS GA+ G G P P AP P G G + A A A G A
Sbjct: 206 PSCGANGGGGGGPSPA-GAPGAAGPGGPGGEPGKGGAAAAAAAAAAAAAAAAAAAAGGLA 264
Query: 69 ARGRASWCWALALLWLAVVPGWSRVSGIP 97
A G WA PG ++ IP
Sbjct: 265 AAGGPGQGWA---------PGPGPITSIP 284
>gi|4758156 diacylglycerol kinase, iota [Homo sapiens]
Length = 1065
Score = 32.0 bits (71), Expect = 1.0
Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 8 GPSSGAD-----AQGQGAPRPGLAAPRMLLPPASQASRGSGSTGCSLMAQEVDTAQGAEM 62
GP SGA A G GA P +A +S GSG+ C L A+ +GA
Sbjct: 35 GPCSGAACAPSAAAGAGAMNPSSSAGEEKGATGGSSSSGSGAGSCCLGAEGGADPRGAGS 94
Query: 63 RRGAGAA 69
AGAA
Sbjct: 95 AAAAGAA 101
>gi|115430209 phosphatase and actin regulator 4 isoform 2 [Homo
sapiens]
Length = 712
Score = 32.0 bits (71), Expect = 1.0
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 9/116 (7%)
Query: 9 PSSGADAQGQGAPRPGLAAPRMLLPPASQASRG-------SGSTGCSLMAQEVDTAQGAE 61
P+S A++ + P+P L P+ L + +AS G SG T +++ + TA A
Sbjct: 162 PNSEAESVPENVPKPPLLPPKRPLSSSHEASEGQAKDATSSGGTARFIISTSITTAPAAT 221
Query: 62 MRRGAGAARGRASWCWALALLWLAVVPGWSRVSGIPSRRHWPVPYKRFDFRPKPDP 117
+ A S + A L P + + PS H VP K+ P P P
Sbjct: 222 TAATSLAKTVNLSVTPSPAPRTLPAAPASTNTTATPSLTHM-VPAKQPPI-PPPKP 275
>gi|115430211 phosphatase and actin regulator 4 isoform 1 [Homo
sapiens]
Length = 702
Score = 32.0 bits (71), Expect = 1.0
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 9/116 (7%)
Query: 9 PSSGADAQGQGAPRPGLAAPRMLLPPASQASRG-------SGSTGCSLMAQEVDTAQGAE 61
P+S A++ + P+P L P+ L + +AS G SG T +++ + TA A
Sbjct: 152 PNSEAESVPENVPKPPLLPPKRPLSSSHEASEGQAKDATSSGGTARFIISTSITTAPAAT 211
Query: 62 MRRGAGAARGRASWCWALALLWLAVVPGWSRVSGIPSRRHWPVPYKRFDFRPKPDP 117
+ A S + A L P + + PS H VP K+ P P P
Sbjct: 212 TAATSLAKTVNLSVTPSPAPRTLPAAPASTNTTATPSLTHM-VPAKQPPI-PPPKP 265
>gi|208022661 hypothetical protein LOC57701 [Homo sapiens]
Length = 1334
Score = 31.6 bits (70), Expect = 1.3
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 1 MRRNLRLGPSSGADAQGQGAPRPGLAAPRMLLPPASQASRGSG 43
++ L++GP S +AQG P P + LPP S+ S G
Sbjct: 430 VKSKLQIGPPSPGEAQGPLLPSPARGLKFLKLPPTSEKSPSPG 472
>gi|222418613 integrin alpha 7 isoform 1 precursor [Homo sapiens]
Length = 1141
Score = 31.2 bits (69), Expect = 1.8
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 21 PRPG----LAAPRMLLPPASQASRGSGSTGCSLMAQE-----VDTAQGAEMRR 64
PRP + AP+ L P QA+R G C L +E VD QGA+M++
Sbjct: 64 PRPQSWLLVGAPQALALPGQQANRTGGLFACPLSLEETDCYRVDIDQGADMQK 116
>gi|222418611 integrin alpha 7 isoform 2 precursor [Homo sapiens]
Length = 1137
Score = 31.2 bits (69), Expect = 1.8
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 21 PRPG----LAAPRMLLPPASQASRGSGSTGCSLMAQE-----VDTAQGAEMRR 64
PRP + AP+ L P QA+R G C L +E VD QGA+M++
Sbjct: 64 PRPQSWLLVGAPQALALPGQQANRTGGLFACPLSLEETDCYRVDIDQGADMQK 116
>gi|169214061 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 31.2 bits (69), Expect = 1.8
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 9 PSSGADAQGQGAPRPGLAAPRMLLPPASQASRGSGSTG-CSLMAQEVDTAQGAEMRRGAG 67
PS A A Q RP L+ + L P + R +GS G CS + GA M G+
Sbjct: 208 PSPAATAAPQPEQRPHLSRGQWRLLPRRRPERAAGSAGSCSSRRALPASGSGAAMT-GSW 266
Query: 68 AARGRASW 75
AA R +W
Sbjct: 267 AAPPRPAW 274
>gi|169214437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 31.2 bits (69), Expect = 1.8
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 9 PSSGADAQGQGAPRPGLAAPRMLLPPASQASRGSGSTG-CSLMAQEVDTAQGAEMRRGAG 67
PS A A Q RP L+ + L P + R +GS G CS + GA M G+
Sbjct: 208 PSPAATAAPQPEQRPHLSRGQWRLLPRRRPERAAGSAGSCSSRRALPASGSGAAMT-GSW 266
Query: 68 AARGRASW 75
AA R +W
Sbjct: 267 AAPPRPAW 274
>gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo
sapiens]
Length = 492
Score = 31.2 bits (69), Expect = 1.8
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 15 AQGQGAPRPGLAAPRM-LLPPAS--QASRGSGSTGCSLMAQEVDTAQGAEMRRGAGAA 69
AQ GA RPG AP + LPPA+ A G+G+ G L E+ + G + RG GAA
Sbjct: 387 AQRSGA-RPGAPAPPLPCLPPAAVCHALAGAGAPGGRL---ELGLSPGTRLIRGGGAA 440
>gi|239748022 PREDICTED: hypothetical protein XP_002346495 [Homo
sapiens]
Length = 287
Score = 31.2 bits (69), Expect = 1.8
Identities = 41/163 (25%), Positives = 59/163 (36%), Gaps = 32/163 (19%)
Query: 17 GQGAPRPGLAAPRMLLPPASQASRGSGSTGCSLMAQEVDTAQGAEMRRGAGAARGRASWC 76
G GA RP L P + PP+ + S G G S + AQ + AG++ A
Sbjct: 120 GWGACRPALYGPSLCAPPSLRGSAEDG--GRSGSCTRLPRAQPPLRWQPAGSSEQEAQGG 177
Query: 77 WALA-------------LLWLAVVPGWSRVSGIPSRRHWP-----------VPYKRF--- 109
W++ +W A + V G+ R+ +P F
Sbjct: 178 WSVGPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGD 237
Query: 110 --DFRPKPDPYCQAKYTFCPTGSPIPVMEGDDDIEVFRLQAPV 150
RP P+P CQA P +E +D E L+APV
Sbjct: 238 PGSIRPGPEPGCQASRVIKGGLGPFIEVEPEDGKE-RALRAPV 279
>gi|169213353 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 31.2 bits (69), Expect = 1.8
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 9 PSSGADAQGQGAPRPGLAAPRMLLPPASQASRGSGSTG-CSLMAQEVDTAQGAEMRRGAG 67
PS A A Q RP L+ + L P + R +GS G CS + GA M G+
Sbjct: 208 PSPAATAAPQPEQRPHLSRGQWRLLPRRRPERAAGSAGSCSSRRALPASGSGAAMT-GSW 266
Query: 68 AARGRASW 75
AA R +W
Sbjct: 267 AAPPRPAW 274
>gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo
sapiens]
Length = 492
Score = 31.2 bits (69), Expect = 1.8
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 15 AQGQGAPRPGLAAPRM-LLPPAS--QASRGSGSTGCSLMAQEVDTAQGAEMRRGAGAA 69
AQ GA RPG AP + LPPA+ A G+G+ G L E+ + G + RG GAA
Sbjct: 387 AQRSGA-RPGAPAPPLPCLPPAAVCHALAGAGAPGGRL---ELGLSPGTRLIRGGGAA 440
>gi|217330584 stimulated by retinoic acid gene 6 homolog isoform b
[Homo sapiens]
Length = 658
Score = 30.8 bits (68), Expect = 2.3
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 28 PRMLLPPASQASRGSGSTGCSLMAQEVDTAQGAEMRRGAGAARGRASWCWALALL 82
PR + P G G L+ + A+GA GA+RGRA W A LL
Sbjct: 587 PRTMAAPQDSLRPGEEDEGMQLLQTKDSMAKGAR----PGASRGRARWGLAYTLL 637
>gi|217330582 stimulated by retinoic acid gene 6 homolog isoform a
[Homo sapiens]
Length = 667
Score = 30.8 bits (68), Expect = 2.3
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 28 PRMLLPPASQASRGSGSTGCSLMAQEVDTAQGAEMRRGAGAARGRASWCWALALL 82
PR + P G G L+ + A+GA GA+RGRA W A LL
Sbjct: 596 PRTMAAPQDSLRPGEEDEGMQLLQTKDSMAKGAR----PGASRGRARWGLAYTLL 646
>gi|217330580 stimulated by retinoic acid gene 6 homolog isoform a
[Homo sapiens]
Length = 667
Score = 30.8 bits (68), Expect = 2.3
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 28 PRMLLPPASQASRGSGSTGCSLMAQEVDTAQGAEMRRGAGAARGRASWCWALALL 82
PR + P G G L+ + A+GA GA+RGRA W A LL
Sbjct: 596 PRTMAAPQDSLRPGEEDEGMQLLQTKDSMAKGAR----PGASRGRARWGLAYTLL 646
>gi|217330578 stimulated by retinoic acid gene 6 homolog isoform a
[Homo sapiens]
Length = 667
Score = 30.8 bits (68), Expect = 2.3
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 28 PRMLLPPASQASRGSGSTGCSLMAQEVDTAQGAEMRRGAGAARGRASWCWALALL 82
PR + P G G L+ + A+GA GA+RGRA W A LL
Sbjct: 596 PRTMAAPQDSLRPGEEDEGMQLLQTKDSMAKGAR----PGASRGRARWGLAYTLL 646
>gi|239753457 PREDICTED: hypothetical protein XP_002345662 [Homo
sapiens]
Length = 319
Score = 30.4 bits (67), Expect = 3.0
Identities = 26/89 (29%), Positives = 34/89 (38%), Gaps = 15/89 (16%)
Query: 17 GQGAPRPGLAAPRMLLPPASQASRGSGSTGCSLMAQEVDTAQGAEMRRGAGAARGRASWC 76
G GA RP L P + PP+ + S G G S + AQ + AG++ A
Sbjct: 120 GWGACRPALYGPSLCAPPSLRGSAEDG--GRSGSCTRLPRAQPPLRWQPAGSSEQEAQ-- 175
Query: 77 WALALLWLAVVPGWSRVSGIPSRRHWPVP 105
GWS G+ R H P P
Sbjct: 176 -----------GGWSVGPGLGERHHGPRP 193
>gi|239741918 PREDICTED: hypothetical protein XP_002342351 [Homo
sapiens]
Length = 319
Score = 30.4 bits (67), Expect = 3.0
Identities = 26/89 (29%), Positives = 34/89 (38%), Gaps = 15/89 (16%)
Query: 17 GQGAPRPGLAAPRMLLPPASQASRGSGSTGCSLMAQEVDTAQGAEMRRGAGAARGRASWC 76
G GA RP L P + PP+ + S G G S + AQ + AG++ A
Sbjct: 120 GWGACRPALYGPSLCAPPSLRGSAEDG--GRSGSCTRLPRAQPPLRWQPAGSSEQEAQ-- 175
Query: 77 WALALLWLAVVPGWSRVSGIPSRRHWPVP 105
GWS G+ R H P P
Sbjct: 176 -----------GGWSVGPGLGERHHGPRP 193
>gi|116292168 KRAB A domain containing 1 [Homo sapiens]
Length = 1030
Score = 30.4 bits (67), Expect = 3.0
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 12/76 (15%)
Query: 44 STGCSLMAQEVDTAQGAEMRRG----AGAARGRASWCWALALLWLAVVPGWSRVSGIPSR 99
+T + +AQEV T + R G G+ASW W L P R + P
Sbjct: 818 ATALAGLAQEVATMRTQVNRLGRRPQGPGPMGQASWMWTL--------PRGPRWAHGPGH 869
Query: 100 RHWPVPYKRFDFRPKP 115
RH P ++ RPKP
Sbjct: 870 RHLPYWRQKGPTRPKP 885
>gi|13994287 BTE-binding protein 4 [Homo sapiens]
Length = 252
Score = 29.6 bits (65), Expect = 5.1
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 8 GPSSGADAQG--QGAPRPGLAAPRMLLPPASQASRGSGSTGCSLMAQEVDTAQGAEMRRG 65
GP++G D + + A PG P PP A+ G G G + + + A++R G
Sbjct: 36 GPAAGLDVRAARREAASPGTPGP----PPPPPAASGPGP-GAAAAPHLLAASILADLRGG 90
Query: 66 AGAARGRAS 74
GAA G AS
Sbjct: 91 PGAAPGGAS 99
>gi|227430303 CD109 antigen isoform 3 precursor [Homo sapiens]
Length = 1368
Score = 29.6 bits (65), Expect = 5.1
Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 226 ENGTLVQVATISGNMFNQMAKWVKQDNETGIYYETWNVKASPEKG---------AETWFD 276
E G+ + S N + +W+ Q ++ G+ +T+ + + P G +T++
Sbjct: 81 EKGSFKTLTLPSDPKSNLIQQWLSQQSDLGVISKTFQLSSHPILGDWSIQVQVNDQTYYQ 140
Query: 277 SYDCSKFVLRTF 288
S+ S++VL F
Sbjct: 141 SFQVSEYVLPKF 152
>gi|77917617 hypothetical protein LOC54463 isoform 1 [Homo
sapiens]
Length = 497
Score = 29.6 bits (65), Expect = 5.1
Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 18 QGAPRPGLAAPRMLLPPASQASRGSGSTGCSLMAQEVDTAQGA--EMRRGAGAARGRASW 75
+G P P PP QAS AQE A+GA ++ AG A +W
Sbjct: 12 EGCPAPAAEEQAPPSPPPPQASPAERQQQ-EEEAQEAGAAEGAGLQVEEAAGRAAAAVTW 70
Query: 76 CWALALLWL 84
+LWL
Sbjct: 71 LLGEPVLWL 79
>gi|239755004 PREDICTED: hypothetical protein [Homo sapiens]
Length = 558
Score = 29.3 bits (64), Expect = 6.7
Identities = 29/102 (28%), Positives = 35/102 (34%), Gaps = 38/102 (37%)
Query: 9 PSSGADAQGQGA-----PRPGLAAPR------------------MLLPPASQASRGS--- 42
P +G GQ A P P L APR PPASQA+ S
Sbjct: 8 PGTGTGPDGQEAAESRRPAPSLRAPRGRTHLPGVARCPWRLHGAAFAPPASQAALASAGS 67
Query: 43 ---------GSTGCSLMAQEVDTAQGAEMRRGAGAARGRASW 75
S GC+L + +G R G G GR +W
Sbjct: 68 RRCAPAALCSSGGCALTRRAACGGRGGGTRAGQG---GRGAW 106
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.139 0.459
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,503,378
Number of Sequences: 37866
Number of extensions: 890397
Number of successful extensions: 2529
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 2504
Number of HSP's gapped (non-prelim): 43
length of query: 407
length of database: 18,247,518
effective HSP length: 105
effective length of query: 302
effective length of database: 14,271,588
effective search space: 4310019576
effective search space used: 4310019576
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.