Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 57232759
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|57232759 intestine-specific homeobox [Homo sapiens]
(245 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|57232759 intestine-specific homeobox [Homo sapiens] 517 e-147
gi|126116581 retina and anterior neural fold homeobox [Homo sapi... 109 2e-24
gi|55743092 aristaless-like homeobox 4 [Homo sapiens] 105 3e-23
gi|14249388 retina and anterior neural fold homeobox 2 [Homo sap... 105 4e-23
gi|113204604 aristaless-like homeobox 3 [Homo sapiens] 100 2e-21
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens] 99 3e-21
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens] 99 3e-21
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens] 99 3e-21
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens] 99 3e-21
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens] 99 3e-21
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens] 99 3e-21
gi|24497589 aristaless related homeobox [Homo sapiens] 97 1e-20
gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens] 97 1e-20
gi|7706659 paired related homeobox 2 [Homo sapiens] 97 1e-20
gi|7524359 paired box 7 isoform 2 [Homo sapiens] 94 8e-20
gi|4505619 paired box 7 isoform 1 [Homo sapiens] 94 1e-19
gi|207029223 paired box 7 isoform 3 [Homo sapiens] 94 1e-19
gi|89145413 short stature homeobox 2 isoform a [Homo sapiens] 93 2e-19
gi|11056038 visual system homeobox 1 isoform a [Homo sapiens] 93 2e-19
gi|189083681 paired box gene 6 isoform a [Homo sapiens] 93 2e-19
gi|4580424 paired box gene 6 isoform b [Homo sapiens] 93 2e-19
gi|4505615 paired box gene 6 isoform a [Homo sapiens] 93 2e-19
gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens] 92 5e-19
gi|46249382 paired-like homeobox 2a [Homo sapiens] 92 5e-19
gi|14149760 orthopedia homeobox [Homo sapiens] 92 5e-19
gi|12707580 paired-like homeobox 2b [Homo sapiens] 91 7e-19
gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens] 91 9e-19
gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo sapi... 91 9e-19
gi|122937484 dorsal root ganglia homeobox [Homo sapiens] 91 1e-18
gi|34365783 visual system homeobox 2 [Homo sapiens] 89 3e-18
>gi|57232759 intestine-specific homeobox [Homo sapiens]
Length = 245
Score = 517 bits (1331), Expect = e-147
Identities = 245/245 (100%), Positives = 245/245 (100%)
Query: 1 MCAEVGPALCRGMERNSLGCCEAPKKLSLSFSIEAILKRPARRSDMDRPEGPGEEGPGEA 60
MCAEVGPALCRGMERNSLGCCEAPKKLSLSFSIEAILKRPARRSDMDRPEGPGEEGPGEA
Sbjct: 1 MCAEVGPALCRGMERNSLGCCEAPKKLSLSFSIEAILKRPARRSDMDRPEGPGEEGPGEA 60
Query: 61 AASGSGLEKPPKDQPQEGRKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLAARIN 120
AASGSGLEKPPKDQPQEGRKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLAARIN
Sbjct: 61 AASGSGLEKPPKDQPQEGRKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLAARIN 120
Query: 121 LPEARVQIWFQNQRAKWRKQEKIGNLGAPQQLSEASVALPTNLDVAGPTWTSTALRRLAP 180
LPEARVQIWFQNQRAKWRKQEKIGNLGAPQQLSEASVALPTNLDVAGPTWTSTALRRLAP
Sbjct: 121 LPEARVQIWFQNQRAKWRKQEKIGNLGAPQQLSEASVALPTNLDVAGPTWTSTALRRLAP 180
Query: 181 PTSCCPSAQDQLASAWFPAWITLLPAHPWETQPVPGLPIHQTCIPVLCILPPPHPKWGSI 240
PTSCCPSAQDQLASAWFPAWITLLPAHPWETQPVPGLPIHQTCIPVLCILPPPHPKWGSI
Sbjct: 181 PTSCCPSAQDQLASAWFPAWITLLPAHPWETQPVPGLPIHQTCIPVLCILPPPHPKWGSI 240
Query: 241 CATST 245
CATST
Sbjct: 241 CATST 245
>gi|126116581 retina and anterior neural fold homeobox [Homo
sapiens]
Length = 346
Score = 109 bits (272), Expect = 2e-24
Identities = 49/95 (51%), Positives = 65/95 (68%)
Query: 49 PEGPGEEGPGEAAASGSGLEKPPKDQPQEGRKSKRRVRTTFTTEQLHELEKIFHFTHYPD 108
P+ PGE P G + + ++ +K RR RTTFTT QLHELE+ F +HYPD
Sbjct: 103 PKEPGEARPSPGLPVGPATGEAKLSEEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPD 162
Query: 109 VHIRSQLAARINLPEARVQIWFQNQRAKWRKQEKI 143
V+ R +LA ++NLPE RVQ+WFQN+RAKWR+QEK+
Sbjct: 163 VYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEKL 197
>gi|55743092 aristaless-like homeobox 4 [Homo sapiens]
Length = 411
Score = 105 bits (263), Expect = 3e-23
Identities = 76/212 (35%), Positives = 99/212 (46%), Gaps = 36/212 (16%)
Query: 19 GCCEAPKKLSL-----SFSIEAILKRP--ARRSDMDRPEGP------------------G 53
G C+ P SL S A L+ P A+ S + PE P G
Sbjct: 127 GACKTPPDGSLKLQEGSSGHSAALQVPCYAKESSLGEPELPPDSDTVGMDSSYLSVKEAG 186
Query: 54 EEGPGEAAASGSGLEKPPKDQPQEGRKSK-RRVRTTFTTEQLHELEKIFHFTHYPDVHIR 112
+GP + A+S L P + E K K RR RTTFT+ QL ELEK+F THYPDV+ R
Sbjct: 187 VKGPQDRASSD--LPSPLEKADSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAR 244
Query: 113 SQLAARINLPEARVQIWFQNQRAKWRKQEKIGNLGAPQQLSEASVALP------TNLDVA 166
QLA R +L EARVQ+WFQN+RAKWRK+E+ G + + + LP +
Sbjct: 245 EQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRTHFSTAYELPLLTRAENYAQIQ 304
Query: 167 GPTWTSTALRRLAPPTSCCPSAQDQLASAWFP 198
P+W A P C D + + P
Sbjct: 305 NPSWLGN--NGAASPVPACVVPCDPVPACMSP 334
>gi|14249388 retina and anterior neural fold homeobox 2 [Homo
sapiens]
Length = 184
Score = 105 bits (262), Expect = 4e-23
Identities = 57/108 (52%), Positives = 76/108 (70%), Gaps = 9/108 (8%)
Query: 57 PGEAAASGSGLEKPPKDQPQEGRKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLA 116
PGE A+ G P ++ P +K RR RTTFTT QLH+LE+ F +HYPDV+ R +LA
Sbjct: 5 PGEGPATEGGGLGPGEEAP---KKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELA 61
Query: 117 ARINLPEARVQIWFQNQRAKWRKQEKI----GNLGAPQQLSEASVALP 160
A+++LPE RVQ+WFQN+RAKWR+QE++ G + AP +L EA ALP
Sbjct: 62 AKVHLPEVRVQVWFQNRRAKWRRQERLESGSGAVAAP-RLPEAP-ALP 107
>gi|113204604 aristaless-like homeobox 3 [Homo sapiens]
Length = 343
Score = 99.8 bits (247), Expect = 2e-21
Identities = 66/146 (45%), Positives = 81/146 (55%), Gaps = 11/146 (7%)
Query: 6 GPALCRGMERNSLGCCEAPKKLSLSFSIEAILKRPARRSDMDRPEGPGEEGPGEAAAS-- 63
GPAL G G EA +K S + S L R D P + PG AS
Sbjct: 78 GPALNGGHFYE--GPAEAEEKTSKAASFPQ-LPLDCRGGPRDGPSNL-QGSPGPCLASLH 133
Query: 64 ---GSGLEKPPKDQPQEGRKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLAARIN 120
GL P + + + KRR RTTF+T QL ELEK+F THYPDV+ R QLA R +
Sbjct: 134 LPLSPGL--PDSMELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTD 191
Query: 121 LPEARVQIWFQNQRAKWRKQEKIGNL 146
L EARVQ+WFQN+RAKWRK+E+ G +
Sbjct: 192 LTEARVQVWFQNRRAKWRKRERYGKI 217
>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
Length = 483
Score = 99.0 bits (245), Expect = 3e-21
Identities = 69/200 (34%), Positives = 93/200 (46%), Gaps = 30/200 (15%)
Query: 38 KRPARRSDMDRPEGPGEEGPGEAAASGSGLEKPPKDQPQEG-----------RKSKRRVR 86
K +D++R E E + + G E+ Q EG ++ +RR R
Sbjct: 163 KGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSR 222
Query: 87 TTFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEARVQIWFQNQRAKWRKQEKIGNL 146
TTFT EQL ELE+ F THYPD++ R +LA R L EARVQ+WF N+RA+WRKQ L
Sbjct: 223 TTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQL 282
Query: 147 GAPQQLSEASVALPTNLDVAGPTWTSTALRRLA-PPTSCCPSAQDQLASAWFPAWITLLP 205
A L PT A PT + L + PTS + D ++ P
Sbjct: 283 MAFNHLIPGGFP-PT----AMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRP------- 330
Query: 206 AHPWETQPVPGLPIHQTCIP 225
QP+P +HQ+ IP
Sbjct: 331 ------QPLPPSTVHQSTIP 344
>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
Length = 403
Score = 99.0 bits (245), Expect = 3e-21
Identities = 69/200 (34%), Positives = 93/200 (46%), Gaps = 30/200 (15%)
Query: 38 KRPARRSDMDRPEGPGEEGPGEAAASGSGLEKPPKDQPQEG-----------RKSKRRVR 86
K +D++R E E + + G E+ Q EG ++ +RR R
Sbjct: 164 KGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSR 223
Query: 87 TTFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEARVQIWFQNQRAKWRKQEKIGNL 146
TTFT EQL ELE+ F THYPD++ R +LA R L EARVQ+WF N+RA+WRKQ L
Sbjct: 224 TTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQL 283
Query: 147 GAPQQLSEASVALPTNLDVAGPTWTSTALRRLA-PPTSCCPSAQDQLASAWFPAWITLLP 205
A L PT A PT + L + PTS + D ++ P
Sbjct: 284 MAFNHLIPGGFP-PT----AMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRP------- 331
Query: 206 AHPWETQPVPGLPIHQTCIP 225
QP+P +HQ+ IP
Sbjct: 332 ------QPLPPSTVHQSTIP 345
>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
Length = 407
Score = 99.0 bits (245), Expect = 3e-21
Identities = 69/200 (34%), Positives = 93/200 (46%), Gaps = 30/200 (15%)
Query: 38 KRPARRSDMDRPEGPGEEGPGEAAASGSGLEKPPKDQPQEG-----------RKSKRRVR 86
K +D++R E E + + G E+ Q EG ++ +RR R
Sbjct: 164 KGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSR 223
Query: 87 TTFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEARVQIWFQNQRAKWRKQEKIGNL 146
TTFT EQL ELE+ F THYPD++ R +LA R L EARVQ+WF N+RA+WRKQ L
Sbjct: 224 TTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQL 283
Query: 147 GAPQQLSEASVALPTNLDVAGPTWTSTALRRLA-PPTSCCPSAQDQLASAWFPAWITLLP 205
A L PT A PT + L + PTS + D ++ P
Sbjct: 284 MAFNHLIPGGFP-PT----AMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRP------- 331
Query: 206 AHPWETQPVPGLPIHQTCIP 225
QP+P +HQ+ IP
Sbjct: 332 ------QPLPPSTVHQSTIP 345
>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
Length = 505
Score = 99.0 bits (245), Expect = 3e-21
Identities = 69/200 (34%), Positives = 93/200 (46%), Gaps = 30/200 (15%)
Query: 38 KRPARRSDMDRPEGPGEEGPGEAAASGSGLEKPPKDQPQEG-----------RKSKRRVR 86
K +D++R E E + + G E+ Q EG ++ +RR R
Sbjct: 164 KGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSR 223
Query: 87 TTFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEARVQIWFQNQRAKWRKQEKIGNL 146
TTFT EQL ELE+ F THYPD++ R +LA R L EARVQ+WF N+RA+WRKQ L
Sbjct: 224 TTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQL 283
Query: 147 GAPQQLSEASVALPTNLDVAGPTWTSTALRRLA-PPTSCCPSAQDQLASAWFPAWITLLP 205
A L PT A PT + L + PTS + D ++ P
Sbjct: 284 MAFNHLIPGGFP-PT----AMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRP------- 331
Query: 206 AHPWETQPVPGLPIHQTCIP 225
QP+P +HQ+ IP
Sbjct: 332 ------QPLPPSTVHQSTIP 345
>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
Length = 484
Score = 99.0 bits (245), Expect = 3e-21
Identities = 69/200 (34%), Positives = 93/200 (46%), Gaps = 30/200 (15%)
Query: 38 KRPARRSDMDRPEGPGEEGPGEAAASGSGLEKPPKDQPQEG-----------RKSKRRVR 86
K +D++R E E + + G E+ Q EG ++ +RR R
Sbjct: 164 KGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSR 223
Query: 87 TTFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEARVQIWFQNQRAKWRKQEKIGNL 146
TTFT EQL ELE+ F THYPD++ R +LA R L EARVQ+WF N+RA+WRKQ L
Sbjct: 224 TTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQL 283
Query: 147 GAPQQLSEASVALPTNLDVAGPTWTSTALRRLA-PPTSCCPSAQDQLASAWFPAWITLLP 205
A L PT A PT + L + PTS + D ++ P
Sbjct: 284 MAFNHLIPGGFP-PT----AMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRP------- 331
Query: 206 AHPWETQPVPGLPIHQTCIP 225
QP+P +HQ+ IP
Sbjct: 332 ------QPLPPSTVHQSTIP 345
>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
Length = 479
Score = 99.0 bits (245), Expect = 3e-21
Identities = 69/200 (34%), Positives = 93/200 (46%), Gaps = 30/200 (15%)
Query: 38 KRPARRSDMDRPEGPGEEGPGEAAASGSGLEKPPKDQPQEG-----------RKSKRRVR 86
K +D++R E E + + G E+ Q EG ++ +RR R
Sbjct: 164 KGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSR 223
Query: 87 TTFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEARVQIWFQNQRAKWRKQEKIGNL 146
TTFT EQL ELE+ F THYPD++ R +LA R L EARVQ+WF N+RA+WRKQ L
Sbjct: 224 TTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQL 283
Query: 147 GAPQQLSEASVALPTNLDVAGPTWTSTALRRLA-PPTSCCPSAQDQLASAWFPAWITLLP 205
A L PT A PT + L + PTS + D ++ P
Sbjct: 284 MAFNHLIPGGFP-PT----AMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRP------- 331
Query: 206 AHPWETQPVPGLPIHQTCIP 225
QP+P +HQ+ IP
Sbjct: 332 ------QPLPPSTVHQSTIP 345
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 97.4 bits (241), Expect = 1e-20
Identities = 61/140 (43%), Positives = 75/140 (53%), Gaps = 17/140 (12%)
Query: 79 RKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEARVQIWFQNQRAKWR 138
++ +RR RTTFT+ QL ELE+ F THYPDV R +LA R++L EARVQ+WFQN+RAKWR
Sbjct: 325 KRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWR 384
Query: 139 KQEKIGNLGAPQQLSEASVALPTNLDVAGPTWTSTALRRLAP--PTSCCPSAQDQLASAW 196
K+EK G + P L GP +A L+P S P L SAW
Sbjct: 385 KREKAG-----------AQTHPPGLPFPGPL---SATHPLSPYLDASPFPPHHPALDSAW 430
Query: 197 FPAWITLLPAHPWETQPVPG 216
A A P P PG
Sbjct: 431 TAAAAAAAAAFP-SLPPPPG 449
>gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens]
Length = 326
Score = 97.4 bits (241), Expect = 1e-20
Identities = 44/65 (67%), Positives = 53/65 (81%)
Query: 82 KRRVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEARVQIWFQNQRAKWRKQE 141
KRR RTTFT+ QL ELEK+F THYPDV++R QLA R L EARVQ+WFQN+RAKWRK+E
Sbjct: 132 KRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRE 191
Query: 142 KIGNL 146
+ G +
Sbjct: 192 RYGQI 196
>gi|7706659 paired related homeobox 2 [Homo sapiens]
Length = 253
Score = 97.4 bits (241), Expect = 1e-20
Identities = 61/187 (32%), Positives = 91/187 (48%), Gaps = 25/187 (13%)
Query: 20 CCEAPKKLSLSFSIEA--------ILKRPARRSDMDRPEGPGEEGPG-----EAAASGSG 66
C +A K S+S ++ + RP R++ EG E G EAA
Sbjct: 31 CAQARKNFSVSHLLDLEEVAAAGRLAARPGARAEAR--EGAAREPSGGSSGSEAAPQDGE 88
Query: 67 LEKPPKDQPQEGRKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEARV 126
P + + +K +RR RTTF + QL LE++F THYPD +R +LA R+NL EARV
Sbjct: 89 CPSPGRGSAAKRKKKQRRNRTTFNSSQLQALERVFERTHYPDAFVREELARRVNLSEARV 148
Query: 127 QIWFQNQRAKWRKQEK----------IGNLGAPQQLSEASVALPTNLDVAGPTWTSTALR 176
Q+WFQN+RAK+R+ E+ + + + + PT L +WT+++
Sbjct: 149 QVWFQNRRAKFRRNERAMLASRSASLLKSYSQEAAIEQPVAPRPTALSPDYLSWTASSPY 208
Query: 177 RLAPPTS 183
PP S
Sbjct: 209 STVPPYS 215
>gi|7524359 paired box 7 isoform 2 [Homo sapiens]
Length = 518
Score = 94.4 bits (233), Expect = 8e-20
Identities = 55/136 (40%), Positives = 71/136 (52%), Gaps = 14/136 (10%)
Query: 24 PKKLSLSFSIEAILKRPARRSDMDRPEGPGEE-----------GPGEAAASGSGLEKPPK 72
P S+S + + + D+ E GE+ G GS +E P
Sbjct: 149 PSVSSISRVLRIKFGKKEEEDEADKKEDDGEKKAKHSIDGILGDKGNRLDEGSDVESEP- 207
Query: 73 DQPQEGRKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEARVQIWFQN 132
D P ++ +RR RTTFT EQL ELEK F THYPD++ R +LA R L EARVQ+WF N
Sbjct: 208 DLPL--KRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSN 265
Query: 133 QRAKWRKQEKIGNLGA 148
+RA+WRKQ L A
Sbjct: 266 RRARWRKQAGANQLAA 281
>gi|4505619 paired box 7 isoform 1 [Homo sapiens]
Length = 520
Score = 93.6 bits (231), Expect = 1e-19
Identities = 57/144 (39%), Positives = 74/144 (51%), Gaps = 18/144 (12%)
Query: 20 CCEAPKKLSLSFSIEAILK----RPARRSDMDRPEGPGEE-----------GPGEAAASG 64
C + L SI +L+ + + D+ E GE+ G G
Sbjct: 143 CDRSTVPSGLVSSISRVLRIKFGKKEEEDEADKKEDDGEKKAKHSIDGILGDKGNRLDEG 202
Query: 65 SGLEKPPKDQPQEGRKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEA 124
S +E P D P ++ +RR RTTFT EQL ELEK F THYPD++ R +LA R L EA
Sbjct: 203 SDVESEP-DLPL--KRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEA 259
Query: 125 RVQIWFQNQRAKWRKQEKIGNLGA 148
RVQ+WF N+RA+WRKQ L A
Sbjct: 260 RVQVWFSNRRARWRKQAGANQLAA 283
>gi|207029223 paired box 7 isoform 3 [Homo sapiens]
Length = 505
Score = 93.6 bits (231), Expect = 1e-19
Identities = 57/144 (39%), Positives = 74/144 (51%), Gaps = 18/144 (12%)
Query: 20 CCEAPKKLSLSFSIEAILK----RPARRSDMDRPEGPGEE-----------GPGEAAASG 64
C + L SI +L+ + + D+ E GE+ G G
Sbjct: 143 CDRSTVPSGLVSSISRVLRIKFGKKEEEDEADKKEDDGEKKAKHSIDGILGDKGNRLDEG 202
Query: 65 SGLEKPPKDQPQEGRKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEA 124
S +E P D P ++ +RR RTTFT EQL ELEK F THYPD++ R +LA R L EA
Sbjct: 203 SDVESEP-DLPL--KRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEA 259
Query: 125 RVQIWFQNQRAKWRKQEKIGNLGA 148
RVQ+WF N+RA+WRKQ L A
Sbjct: 260 RVQVWFSNRRARWRKQAGANQLAA 283
>gi|89145413 short stature homeobox 2 isoform a [Homo sapiens]
Length = 331
Score = 93.2 bits (230), Expect = 2e-19
Identities = 75/197 (38%), Positives = 98/197 (49%), Gaps = 16/197 (8%)
Query: 38 KRPARRSDM---DRPEGPGEEGPGEAAASGSGLEKPPKDQPQEGRKS--KRRVRTTFTTE 92
+ P R DM +R PG E + ++ K EG+ +RR RT FT E
Sbjct: 91 RSPVRELDMGAAERSREPGSPRLTEVSPELKDRKEDAKGMEDEGQTKIKQRRSRTNFTLE 150
Query: 93 QLHELEKIFHFTHYPDVHIRSQLAARINLPEARVQIWFQNQRAKWRKQE----KIGNLGA 148
QL+ELE++F THYPD +R +L+ R+ L EARVQ+WFQN+RAK RKQE K +GA
Sbjct: 151 QLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQLHKGVLIGA 210
Query: 149 PQQLSEASVALPTNLDVAGPTWTSTALRRLAPPTSCCPSAQDQLASAWFPAWITLLP--- 205
Q VA N+ + + + P S AQ QL SA A L P
Sbjct: 211 ASQFEACRVAPYVNVGALRMPFQQDSHCNVT-PLSFQVQAQLQLDSAVAHAHHHLHPHLA 269
Query: 206 AH-PWETQPVP--GLPI 219
AH P+ P P GLP+
Sbjct: 270 AHAPYMMFPAPPFGLPL 286
>gi|11056038 visual system homeobox 1 isoform a [Homo sapiens]
Length = 365
Score = 93.2 bits (230), Expect = 2e-19
Identities = 42/71 (59%), Positives = 50/71 (70%)
Query: 72 KDQPQEGRKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEARVQIWFQ 131
K P G++ KRR RT FT QL ELEK F HYPDV+ R LA + LPE R+Q+WFQ
Sbjct: 154 KASPTLGKRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQ 213
Query: 132 NQRAKWRKQEK 142
N+RAKWRK+EK
Sbjct: 214 NRRAKWRKREK 224
>gi|189083681 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 92.8 bits (229), Expect = 2e-19
Identities = 45/94 (47%), Positives = 64/94 (68%), Gaps = 2/94 (2%)
Query: 54 EEGPGEA--AASGSGLEKPPKDQPQEGRKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHI 111
+EG GE + S +G + + ++ +R RT+FT EQ+ LEK F THYPDV
Sbjct: 180 QEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFA 239
Query: 112 RSQLAARINLPEARVQIWFQNQRAKWRKQEKIGN 145
R +LAA+I+LPEAR+Q+WF N+RAKWR++EK+ N
Sbjct: 240 RERLAAKIDLPEARIQVWFSNRRAKWRREEKLRN 273
>gi|4580424 paired box gene 6 isoform b [Homo sapiens]
Length = 436
Score = 92.8 bits (229), Expect = 2e-19
Identities = 45/94 (47%), Positives = 64/94 (68%), Gaps = 2/94 (2%)
Query: 54 EEGPGEA--AASGSGLEKPPKDQPQEGRKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHI 111
+EG GE + S +G + + ++ +R RT+FT EQ+ LEK F THYPDV
Sbjct: 194 QEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFA 253
Query: 112 RSQLAARINLPEARVQIWFQNQRAKWRKQEKIGN 145
R +LAA+I+LPEAR+Q+WF N+RAKWR++EK+ N
Sbjct: 254 RERLAAKIDLPEARIQVWFSNRRAKWRREEKLRN 287
>gi|4505615 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 92.8 bits (229), Expect = 2e-19
Identities = 45/94 (47%), Positives = 64/94 (68%), Gaps = 2/94 (2%)
Query: 54 EEGPGEA--AASGSGLEKPPKDQPQEGRKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHI 111
+EG GE + S +G + + ++ +R RT+FT EQ+ LEK F THYPDV
Sbjct: 180 QEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFA 239
Query: 112 RSQLAARINLPEARVQIWFQNQRAKWRKQEKIGN 145
R +LAA+I+LPEAR+Q+WF N+RAKWR++EK+ N
Sbjct: 240 RERLAAKIDLPEARIQVWFSNRRAKWRREEKLRN 273
>gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens]
Length = 325
Score = 91.7 bits (226), Expect = 5e-19
Identities = 54/133 (40%), Positives = 74/133 (55%), Gaps = 26/133 (19%)
Query: 52 PGEE------GPGEAAASGSGLEKPPKDQ---------PQEGRKSKRRVRTTFTTEQLHE 96
PGE+ P A S +K P Q Q+G++ ++R RT FT QL+E
Sbjct: 59 PGEDITTVGSTPASLAVSAKDPDKQPGPQGGPNPSQAGQQQGQQKQKRHRTRFTPAQLNE 118
Query: 97 LEKIFHFTHYPDVHIRSQLAARINLPEARVQIWFQNQRAKWRKQEKIGNL---------- 146
LE+ F THYPD+ +R +LA RI L E+RVQ+WFQN+RAKW+K++K N+
Sbjct: 119 LERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWKKRKKTTNVFRAPGTLLPT 178
Query: 147 -GAPQQLSEASVA 158
G PQ S A+ A
Sbjct: 179 PGLPQFPSAAAAA 191
>gi|46249382 paired-like homeobox 2a [Homo sapiens]
Length = 284
Score = 91.7 bits (226), Expect = 5e-19
Identities = 40/72 (55%), Positives = 57/72 (79%)
Query: 71 PKDQPQEGRKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEARVQIWF 130
P+ ++ +RR+RTTFT+ QL ELE++F THYPD++ R +LA +I+L EARVQ+WF
Sbjct: 79 PEPSGLHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWF 138
Query: 131 QNQRAKWRKQEK 142
QN+RAK+RKQE+
Sbjct: 139 QNRRAKFRKQER 150
>gi|14149760 orthopedia homeobox [Homo sapiens]
Length = 325
Score = 91.7 bits (226), Expect = 5e-19
Identities = 54/133 (40%), Positives = 74/133 (55%), Gaps = 26/133 (19%)
Query: 52 PGEE------GPGEAAASGSGLEKPPKDQ---------PQEGRKSKRRVRTTFTTEQLHE 96
PGE+ P A S +K P Q Q+G++ ++R RT FT QL+E
Sbjct: 59 PGEDITTVGSTPASLAVSAKDPDKQPGPQGGPNPSQAGQQQGQQKQKRHRTRFTPAQLNE 118
Query: 97 LEKIFHFTHYPDVHIRSQLAARINLPEARVQIWFQNQRAKWRKQEKIGNL---------- 146
LE+ F THYPD+ +R +LA RI L E+RVQ+WFQN+RAKW+K++K N+
Sbjct: 119 LERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWKKRKKTTNVFRAPGTLLPT 178
Query: 147 -GAPQQLSEASVA 158
G PQ S A+ A
Sbjct: 179 PGLPQFPSAAAAA 191
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 91.3 bits (225), Expect = 7e-19
Identities = 39/64 (60%), Positives = 55/64 (85%)
Query: 79 RKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEARVQIWFQNQRAKWR 138
++ +RR+RTTFT+ QL ELE++F THYPD++ R +LA +I+L EARVQ+WFQN+RAK+R
Sbjct: 95 KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFR 154
Query: 139 KQEK 142
KQE+
Sbjct: 155 KQER 158
>gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens]
Length = 217
Score = 90.9 bits (224), Expect = 9e-19
Identities = 52/133 (39%), Positives = 75/133 (56%), Gaps = 9/133 (6%)
Query: 17 SLGCCEAPKKLSLSFSIEAILKRPARRSDMDRPEGPGEEGPGEAAASG--SGLEKPPKDQ 74
+L +A K S+S ++ L+ E GE G + G SG + P +D
Sbjct: 24 NLDTLQAKKNFSVSHLLD--LEEAGDMVAAQADENVGEAGRSLLESPGLTSGSDTPQQDN 81
Query: 75 PQ-----EGRKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEARVQIW 129
Q + ++ +RR RTTF + QL LE++F THYPD +R LA R+NL EARVQ+W
Sbjct: 82 DQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVW 141
Query: 130 FQNQRAKWRKQEK 142
FQN+RAK+R+ E+
Sbjct: 142 FQNRRAKFRRNER 154
>gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo
sapiens]
Length = 245
Score = 90.9 bits (224), Expect = 9e-19
Identities = 52/133 (39%), Positives = 75/133 (56%), Gaps = 9/133 (6%)
Query: 17 SLGCCEAPKKLSLSFSIEAILKRPARRSDMDRPEGPGEEGPGEAAASG--SGLEKPPKDQ 74
+L +A K S+S ++ L+ E GE G + G SG + P +D
Sbjct: 24 NLDTLQAKKNFSVSHLLD--LEEAGDMVAAQADENVGEAGRSLLESPGLTSGSDTPQQDN 81
Query: 75 PQ-----EGRKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEARVQIW 129
Q + ++ +RR RTTF + QL LE++F THYPD +R LA R+NL EARVQ+W
Sbjct: 82 DQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVW 141
Query: 130 FQNQRAKWRKQEK 142
FQN+RAK+R+ E+
Sbjct: 142 FQNRRAKFRRNER 154
>gi|122937484 dorsal root ganglia homeobox [Homo sapiens]
Length = 268
Score = 90.5 bits (223), Expect = 1e-18
Identities = 46/93 (49%), Positives = 62/93 (66%), Gaps = 3/93 (3%)
Query: 79 RKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEARVQIWFQNQRAKWR 138
R+ +RR RTTFT +QL LE +F THYPDV R +LA +INL EARVQ+WFQN+RAKWR
Sbjct: 35 RRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWR 94
Query: 139 KQEKIGN---LGAPQQLSEASVALPTNLDVAGP 168
K E+ + GA + ++E + N++ P
Sbjct: 95 KTERGASDQEPGAKEPMAEVTPPPVRNINSPPP 127
>gi|34365783 visual system homeobox 2 [Homo sapiens]
Length = 361
Score = 89.0 bits (219), Expect = 3e-18
Identities = 40/67 (59%), Positives = 50/67 (74%)
Query: 76 QEGRKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEARVQIWFQNQRA 135
Q ++ KRR RT FT+ QL ELEK F+ HYPDV+ R LA + LPE R+Q+WFQN+RA
Sbjct: 142 QTKKRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRA 201
Query: 136 KWRKQEK 142
KWRK+EK
Sbjct: 202 KWRKREK 208
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,242,672
Number of Sequences: 37866
Number of extensions: 637659
Number of successful extensions: 3591
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 3123
Number of HSP's gapped (non-prelim): 532
length of query: 245
length of database: 18,247,518
effective HSP length: 100
effective length of query: 145
effective length of database: 14,460,918
effective search space: 2096833110
effective search space used: 2096833110
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.