Search of human proteins with 56676391

Search of human proteins with 56676391

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|56676391 activating signal cointegrator 1 complex subunit 1
[Homo sapiens]
         (357 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|56676391 activating signal cointegrator 1 complex subunit 1 [...   722   0.0  
gi|7706527 A-kinase anchor protein 7 isoform gamma [Homo sapiens]      48   1e-05
gi|4885409 high density lipoprotein binding protein [Homo sapiens]     37   0.021
gi|42716280 high density lipoprotein binding protein [Homo sapiens]    37   0.021
gi|122937472 bicaudal C homolog 1 [Homo sapiens]                       33   0.51 
gi|47716512 mex-3 homolog B [Homo sapiens]                             33   0.51 
gi|8922328 RNA binding motif protein 22 [Homo sapiens]                 32   0.67 
gi|237858799 adenylate kinase domain containing 1 isoform 1 [Hom...    32   0.87 
gi|21450759 adenylate kinase domain containing 1 isoform 2 [Homo...    32   0.87 
gi|147902746 MEX3A protein [Homo sapiens]                              32   0.87 
gi|148229134 ring finger and KH domain containing 2 [Homo sapiens]     31   1.5  
gi|13129138 mitogen-activated protein kinase associated protein ...    30   2.5  
gi|7662302 TBK1 binding protein 1 [Homo sapiens]                       30   3.3  
gi|165905613 ring finger and KH domain containing 1 [Homo sapiens]     30   3.3  
gi|14589951 DNA directed RNA polymerase II polypeptide E [Homo s...    30   4.3  
gi|70167113 adenosine deaminase, RNA-specific isoform d [Homo sa...    29   5.7  
gi|70167032 adenosine deaminase, RNA-specific isoform c [Homo sa...    29   5.7  
gi|70166944 adenosine deaminase, RNA-specific isoform b [Homo sa...    29   5.7  
gi|70166852 adenosine deaminase, RNA-specific isoform a [Homo sa...    29   5.7  
gi|239050813 lipoxygenase homology domains 1 isoform 1 [Homo sap...    29   7.4  
gi|224451124 neurobeachin-like 1 isoform 3 [Homo sapiens]              29   7.4  
gi|157266326 oculocutaneous albinism II [Homo sapiens]                 28   9.7  
gi|16306487 cadherin 7, type 2 preproprotein [Homo sapiens]            28   9.7  
gi|16306489 cadherin 7, type 2 preproprotein [Homo sapiens]            28   9.7  

>gi|56676391 activating signal cointegrator 1 complex subunit 1
           [Homo sapiens]
          Length = 357

 Score =  722 bits (1864), Expect = 0.0
 Identities = 357/357 (100%), Positives = 357/357 (100%)

Query: 1   MEVLRPQLIRIDGRNYRKNPVQEQTYQHEEDEEDFYQGSMECADEPCDAYEVEQTPQGFR 60
           MEVLRPQLIRIDGRNYRKNPVQEQTYQHEEDEEDFYQGSMECADEPCDAYEVEQTPQGFR
Sbjct: 1   MEVLRPQLIRIDGRNYRKNPVQEQTYQHEEDEEDFYQGSMECADEPCDAYEVEQTPQGFR 60

Query: 61  STLRAPSLLYKHIVGKRGDTRKKIEMETKTSISIPKPGQDGEIVITGQHRNGVISARTRI 120
           STLRAPSLLYKHIVGKRGDTRKKIEMETKTSISIPKPGQDGEIVITGQHRNGVISARTRI
Sbjct: 61  STLRAPSLLYKHIVGKRGDTRKKIEMETKTSISIPKPGQDGEIVITGQHRNGVISARTRI 120

Query: 121 DVLLDTFRRKQPFTHFLAFFLNEVEVQEGFLRFQEEVLAKCSMDHGVDSSIFQNPKKLHL 180
           DVLLDTFRRKQPFTHFLAFFLNEVEVQEGFLRFQEEVLAKCSMDHGVDSSIFQNPKKLHL
Sbjct: 121 DVLLDTFRRKQPFTHFLAFFLNEVEVQEGFLRFQEEVLAKCSMDHGVDSSIFQNPKKLHL 180

Query: 181 TIGMLVLLSEEEIQQTCEMLQQCKEEFINDISGGKPLEVEMAGIEYMNDDPGMVDVLYAK 240
           TIGMLVLLSEEEIQQTCEMLQQCKEEFINDISGGKPLEVEMAGIEYMNDDPGMVDVLYAK
Sbjct: 181 TIGMLVLLSEEEIQQTCEMLQQCKEEFINDISGGKPLEVEMAGIEYMNDDPGMVDVLYAK 240

Query: 241 VHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDPNAEGRYNLYTA 300
           VHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDPNAEGRYNLYTA
Sbjct: 241 VHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHATVMNTLFRKDPNAEGRYNLYTA 300

Query: 301 EGKYIFKERESFDGRNILKLFENFYFGSLKLNSIHISQRFTVDSFGNYASCGQIDFS 357
           EGKYIFKERESFDGRNILKLFENFYFGSLKLNSIHISQRFTVDSFGNYASCGQIDFS
Sbjct: 301 EGKYIFKERESFDGRNILKLFENFYFGSLKLNSIHISQRFTVDSFGNYASCGQIDFS 357


>gi|7706527 A-kinase anchor protein 7 isoform gamma [Homo sapiens]
          Length = 326

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 16/138 (11%)

Query: 144 VEVQEGFLRFQEEVLAKCSMDHGVDSSIFQNPKKLHLTIGMLVLLSEEEIQQTCEMLQQC 203
           +++ +  +  Q+E LAK  +  G            H+T+ ++ LL+E+E+    + L + 
Sbjct: 80  IKILQNAIIQQDERLAKAMVSDG----------SFHITLLVMQLLNEDEVNIGIDALLEL 129

Query: 204 KEEFINDISGGKPLEVEMAGIEYMNDDPGMVDVLYAKVHMKDGSNRLQELVDRVLERFQA 263
           K  FI ++  GK L +   GI    +  G V     K+   D  N L E+ +     FQ 
Sbjct: 130 K-PFIEELLQGKHLTLPFQGIGTFGNQVGFV-----KLAEGDHVNSLLEIAETANRTFQE 183

Query: 264 SGLIVKEWNSVKLHATVM 281
            G++V E  S K H T M
Sbjct: 184 KGILVGESRSFKPHLTFM 201


>gi|4885409 high density lipoprotein binding protein [Homo sapiens]
          Length = 1268

 Score = 37.4 bits (85), Expect = 0.021
 Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 61  STLRAPSLLYKHIVGKRGDTRKKIEMETKTSISIPKPGQ-DGEIVITGQHRNGVISARTR 119
           +T+  P   ++ ++GK G+  + +E++T T I IP+P     +I ITG  + G+  AR  
Sbjct: 153 ATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGT-KEGIEKARHE 211

Query: 120 I 120
           +
Sbjct: 212 V 212



 Score = 37.4 bits (85), Expect = 0.021
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 70  YKHIVGKRGDTRKKIEMETKTSISIPKPGQDGE-IVITGQHRNGVISARTRI 120
           +K+I+GK G   KKI  E+ T I +P    + E I+ITG+  N   +AR+RI
Sbjct: 593 HKNIIGKGGANIKKIREESNTKIDLPAENSNSETIIITGKRAN-CEAARSRI 643



 Score = 29.3 bits (64), Expect = 5.7
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 63   LRAPSLLYKHIVGKRGDTRKKIEMETKTSISIPKPGQDGEIV-ITGQHRN 111
            +  P  L+++++G++G   +K+  E + +I +P P    +I+ ITG   N
Sbjct: 977  VEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGLAAN 1026


>gi|42716280 high density lipoprotein binding protein [Homo sapiens]
          Length = 1268

 Score = 37.4 bits (85), Expect = 0.021
 Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 2/61 (3%)

Query: 61  STLRAPSLLYKHIVGKRGDTRKKIEMETKTSISIPKPGQ-DGEIVITGQHRNGVISARTR 119
           +T+  P   ++ ++GK G+  + +E++T T I IP+P     +I ITG  + G+  AR  
Sbjct: 153 ATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGT-KEGIEKARHE 211

Query: 120 I 120
           +
Sbjct: 212 V 212



 Score = 37.4 bits (85), Expect = 0.021
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 70  YKHIVGKRGDTRKKIEMETKTSISIPKPGQDGE-IVITGQHRNGVISARTRI 120
           +K+I+GK G   KKI  E+ T I +P    + E I+ITG+  N   +AR+RI
Sbjct: 593 HKNIIGKGGANIKKIREESNTKIDLPAENSNSETIIITGKRAN-CEAARSRI 643



 Score = 29.3 bits (64), Expect = 5.7
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 63   LRAPSLLYKHIVGKRGDTRKKIEMETKTSISIPKPGQDGEIV-ITGQHRN 111
            +  P  L+++++G++G   +K+  E + +I +P P    +I+ ITG   N
Sbjct: 977  VEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGLAAN 1026


>gi|122937472 bicaudal C homolog 1 [Homo sapiens]
          Length = 974

 Score = 32.7 bits (73), Expect = 0.51
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 7/61 (11%)

Query: 70  YKHIVGKRGDTRKKIEMETKTSISIPKPGQD------GEIVITGQHRNGVISARTRIDVL 123
           + H++GK G+  KK+  ET   I  P   ++       ++ I GQ   GV SAR RI  L
Sbjct: 144 HSHVIGKGGNNIKKVMEETGCHIHFPDSNRNNQAEKSNQVSIAGQPA-GVESARVRIREL 202

Query: 124 L 124
           L
Sbjct: 203 L 203


>gi|47716512 mex-3 homolog B [Homo sapiens]
          Length = 569

 Score = 32.7 bits (73), Expect = 0.51
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 43  ADEPCDAYEVEQTPQGFRSTLRAPSLLYKH---IVGKRGDTRKKIEMETKTSISIPKPGQ 99
           +DE    Y+ E   +    T   P    +H   IVG++G   K +  +T T I  P  G+
Sbjct: 48  SDEGASLYDSEPRKKSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGE 107

Query: 100 DGEIVITGQHRNGVISAR 117
           +   V+TG+  +  ++ R
Sbjct: 108 EPVFVVTGRKEDVAMARR 125



 Score = 30.8 bits (68), Expect = 1.9
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 63  LRAPSLLYKHIVGKRGDTRKKIEMETKTSISIPKPGQDGEIVITGQHRNGVISARTRID 121
           +R P  +   +VG +G T K+I+ +T T I  P   ++    +TG   N V  AR  I+
Sbjct: 165 VRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDKEPVFEVTGMPEN-VDRAREEIE 222


>gi|8922328 RNA binding motif protein 22 [Homo sapiens]
          Length = 420

 Score = 32.3 bits (72), Expect = 0.67
 Identities = 14/49 (28%), Positives = 27/49 (55%)

Query: 183 GMLVLLSEEEIQQTCEMLQQCKEEFINDISGGKPLEVEMAGIEYMNDDP 231
           G+ +   + E+ QTC  L+   +  + D+  G P++V  AG+ + +D P
Sbjct: 60  GVRMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPIQVRDAGLSFKDDMP 108


>gi|237858799 adenylate kinase domain containing 1 isoform 1 [Homo
           sapiens]
          Length = 1911

 Score = 32.0 bits (71), Expect = 0.87
 Identities = 38/156 (24%), Positives = 73/156 (46%), Gaps = 11/156 (7%)

Query: 82  KKIEMETKTSISIPKPGQDGEIVITGQ--HRN-GVISARTRIDV-LLDTFRRKQPFTHFL 137
           K + ++    I+I  P  D    I+GQ  H N G I +R + D  +++  R+K+      
Sbjct: 135 KNLNLKPDVIINIKCPDYDLCQRISGQRQHNNTGYIYSRDQWDPEVIENHRKKKKEAQKD 194

Query: 138 AFFLNEVEVQEGFLRFQEEVLAKCSMDHGVDSSIFQNPKKLHLTIGMLVLLSEEEIQQTC 197
                E E +E     +E  +A+  M   +   + Q P+     +  +V L +E I QT 
Sbjct: 195 G--KGEEEEEEEEQEEEEAFIAEMQMVAEILHHLVQRPEDYLENVENIVKLYKETILQTL 252

Query: 198 E-MLQQCKEEFINDISGGKPLE----VEMAGIEYMN 228
           E ++ +   +++ +++G KP E    + M  ++Y+N
Sbjct: 253 EEVMAEHNPQYLIELNGNKPAEELFMIVMDRLKYLN 288


>gi|21450759 adenylate kinase domain containing 1 isoform 2 [Homo
           sapiens]
          Length = 421

 Score = 32.0 bits (71), Expect = 0.87
 Identities = 38/156 (24%), Positives = 73/156 (46%), Gaps = 11/156 (7%)

Query: 82  KKIEMETKTSISIPKPGQDGEIVITGQ--HRN-GVISARTRIDV-LLDTFRRKQPFTHFL 137
           K + ++    I+I  P  D    I+GQ  H N G I +R + D  +++  R+K+      
Sbjct: 135 KNLNLKPDVIINIKCPDYDLCQRISGQRQHNNTGYIYSRDQWDPEVIENHRKKKKEAQKD 194

Query: 138 AFFLNEVEVQEGFLRFQEEVLAKCSMDHGVDSSIFQNPKKLHLTIGMLVLLSEEEIQQTC 197
                E E +E     +E  +A+  M   +   + Q P+     +  +V L +E I QT 
Sbjct: 195 G--KGEEEEEEEEQEEEEAFIAEMQMVAEILHHLVQRPEDYLENVENIVKLYKETILQTL 252

Query: 198 E-MLQQCKEEFINDISGGKPLE----VEMAGIEYMN 228
           E ++ +   +++ +++G KP E    + M  ++Y+N
Sbjct: 253 EEVMAEHNPQYLIELNGNKPAEELFMIVMDRLKYLN 288


>gi|147902746 MEX3A protein [Homo sapiens]
          Length = 520

 Score = 32.0 bits (71), Expect = 0.87
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 63  LRAPSLLYKHIVGKRGDTRKKIEMETKTSISIPKPGQDGEIVITGQHRNGVISARTRID 121
           +R P  +   +VG +G T K+I+ +T T I  P   +D    ITG   N V  AR  I+
Sbjct: 228 VRVPYRVVGLVVGPKGATIKRIQQQTNTYIITPSRDRDPVFEITGAPGN-VERAREEIE 285



 Score = 30.0 bits (66), Expect = 3.3
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 73  IVGKRGDTRKKIEMETKTSISIPKPGQDGEIVITGQHRNGVISARTRI 120
           IVG++G   K +  +T T I  P  G++   ++TG+ R  V +AR  I
Sbjct: 147 IVGRQGCKIKALRAKTNTYIKTPVRGEEPVFMVTGR-REDVATARREI 193


>gi|148229134 ring finger and KH domain containing 2 [Homo sapiens]
          Length = 659

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 63  LRAPSLLYKHIVGKRGDTRKKIEMETKTSISIPKPGQDGEIVITGQHRNGVISARTRIDV 122
           +R P  +   +VG +G T K+I+ +T T I  P   ++    +TG   N V  AR  I++
Sbjct: 331 VRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDKEPVFEVTGMPEN-VDRAREEIEM 389



 Score = 28.9 bits (63), Expect = 7.4
 Identities = 14/45 (31%), Positives = 25/45 (55%)

Query: 73  IVGKRGDTRKKIEMETKTSISIPKPGQDGEIVITGQHRNGVISAR 117
           IVG++G   K +  +T T I  P  G++   V+TG+  +  ++ R
Sbjct: 247 IVGRQGCKIKALRAKTNTYIKTPVRGEEPIFVVTGRKEDVAMAKR 291


>gi|13129138 mitogen-activated protein kinase associated protein 1
           isoform 2 [Homo sapiens]
          Length = 486

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 25/132 (18%), Positives = 55/132 (41%), Gaps = 15/132 (11%)

Query: 226 YMNDDPGMVDVLYAKVHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHA------- 278
           ++ +D G VD  +  +   +  ++       ++E++ + GL  KE   V+++A       
Sbjct: 233 HIAEDDGEVDTDFPPLDSNEPIHKFGFSTLALVEKYSSPGLTSKESLFVRINAAHGFSLI 292

Query: 279 -------TVMNTLFRKDPNAEGRYNLYTAEGKYIFKERESFDGRNILKLFENFYFGSLKL 331
                  T+   L +     +G   +  +    +F+E    D   +  +  + ++ S K+
Sbjct: 293 QVDNTKVTMKEILLKAVKRRKGSQKVSGSRADGVFEEDSQIDIATVQDMLSSHHYKSFKV 352

Query: 332 NSIHISQRFTVD 343
           + IH   RFT D
Sbjct: 353 SMIH-RLRFTTD 363


>gi|7662302 TBK1 binding protein 1 [Homo sapiens]
          Length = 615

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 7/70 (10%)

Query: 188 LSEEEIQQTCEMLQ----QCKEEFINDISGGKPLEVEMAGIEYMNDDPGMVDVLYAKVHM 243
           L EE++Q  CE LQ    Q +E    D++  +  E +MA ++ + DD   V++  A   +
Sbjct: 245 LREEQLQAECERLQGELKQLQETRAQDLASNQS-ERDMAWVKRVGDD--QVNLALAYTEL 301

Query: 244 KDGSNRLQEL 253
            +   RL+EL
Sbjct: 302 TEELGRLREL 311


>gi|165905613 ring finger and KH domain containing 1 [Homo sapiens]
          Length = 651

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 63  LRAPSLLYKHIVGKRGDTRKKIEMETKTSISIPKPGQDGEIVITGQHRNGVISARTRID 121
           +R P  +   +VG +G T K+I+  T T I  P   ++    +TG   N V  AR  I+
Sbjct: 278 VRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPEN-VDRAREEIE 335


>gi|14589951 DNA directed RNA polymerase II polypeptide E [Homo
           sapiens]
          Length = 210

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 187 LLSEEEIQQTCEMLQQCKEEFINDISGGKPLEVEMAGIEYMNDDPGMVDVLYAKVHMKDG 246
           L++++E+ QT   L++ K +F +  S G+P   ++  +   NDDP     ++     K G
Sbjct: 27  LVTQDELDQT---LEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVG 83

Query: 247 SNRLQELVDRVLERFQASGLIV 268
              ++    R+ E      LIV
Sbjct: 84  IKTIKVYCQRMQEENITRALIV 105


>gi|70167113 adenosine deaminase, RNA-specific isoform d [Homo
           sapiens]
          Length = 931

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 34  DFYQGSMECADEPCDAYEVEQTPQGFRSTLRAPSLLYKHIVGKRGDTRKKIEMETKTSIS 93
           DF  G     D P D   +   P  FR+ +  PS  Y H + +    +K  E + K  IS
Sbjct: 153 DFENGQWATDDIPDDLNSIRAAPGEFRAIMEMPS-FYSHGLPRCSPYKKLTECQLKNPIS 211


>gi|70167032 adenosine deaminase, RNA-specific isoform c [Homo
           sapiens]
          Length = 1181

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 34  DFYQGSMECADEPCDAYEVEQTPQGFRSTLRAPSLLYKHIVGKRGDTRKKIEMETKTSIS 93
           DF  G     D P D   +   P  FR+ +  PS  Y H + +    +K  E + K  IS
Sbjct: 448 DFENGQWATDDIPDDLNSIRAAPGEFRAIMEMPS-FYSHGLPRCSPYKKLTECQLKNPIS 506


>gi|70166944 adenosine deaminase, RNA-specific isoform b [Homo
           sapiens]
          Length = 1200

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 34  DFYQGSMECADEPCDAYEVEQTPQGFRSTLRAPSLLYKHIVGKRGDTRKKIEMETKTSIS 93
           DF  G     D P D   +   P  FR+ +  PS  Y H + +    +K  E + K  IS
Sbjct: 448 DFENGQWATDDIPDDLNSIRAAPGEFRAIMEMPS-FYSHGLPRCSPYKKLTECQLKNPIS 506


>gi|70166852 adenosine deaminase, RNA-specific isoform a [Homo
           sapiens]
          Length = 1226

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 34  DFYQGSMECADEPCDAYEVEQTPQGFRSTLRAPSLLYKHIVGKRGDTRKKIEMETKTSIS 93
           DF  G     D P D   +   P  FR+ +  PS  Y H + +    +K  E + K  IS
Sbjct: 448 DFENGQWATDDIPDDLNSIRAAPGEFRAIMEMPS-FYSHGLPRCSPYKKLTECQLKNPIS 506


>gi|239050813 lipoxygenase homology domains 1 isoform 1 [Homo sapiens]
          Length = 2211

 Score = 28.9 bits (63), Expect = 7.4
 Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 9/87 (10%)

Query: 22   QEQTYQHEEDEEDFYQGSMECADEPCDAYEVEQTPQGFRSTLRAPSLLYKHIV--GKRGD 79
            +E+  + EE+EE+F  G  E  ++    +E  +    + +  +  + L   +V  GK G 
Sbjct: 966  EEEEMEEEEEEEEFGPGMQEVIEQ--HKFEAHR----WLARGKEDNELVVELVPAGKPGP 1019

Query: 80   TRKKIEMETKTSISIPKPGQDGEIVIT 106
             R   E++  T  ++PK G D  + +T
Sbjct: 1020 ERNTYEVQVVTG-NVPKAGTDANVYLT 1045


>gi|224451124 neurobeachin-like 1 isoform 3 [Homo sapiens]
          Length = 2694

 Score = 28.9 bits (63), Expect = 7.4
 Identities = 11/31 (35%), Positives = 23/31 (74%)

Query: 230  DPGMVDVLYAKVHMKDGSNRLQELVDRVLER 260
            +PG  D+LYA +  +  S+RL+E++ +++E+
Sbjct: 1133 EPGNADILYALLLNQKYSDRLREIIFKIMEQ 1163


>gi|157266326 oculocutaneous albinism II [Homo sapiens]
          Length = 838

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 101 GEIVITGQHRNG----VISARTRIDVLLDTFRRKQPFTHFLAFFLNEVEVQEGFLRFQEE 156
           G +V +G  R G    ++   T+ D L   +RR Q  TH    +LN    +   +    E
Sbjct: 234 GALVASGPSRPGREEHIVVELTQADALGSRWRRPQQVTHNWTVYLNPRRSEHSVMSRTFE 293

Query: 157 VLAKCSMDHGVDSSIFQ 173
           VL + ++   + +S+ Q
Sbjct: 294 VLTRETVSISIRASLQQ 310


>gi|16306487 cadherin 7, type 2 preproprotein [Homo sapiens]
          Length = 785

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 6/55 (10%)

Query: 225 EYMNDDPGMVDVLYAKVHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHAT 279
           EYM  DP  V  L++ V   DGS      +  +L    AS + + + N+  +HAT
Sbjct: 59  EYMGSDPLYVGKLHSDVDKGDGS------IKYILSGEGASSIFIIDENTGDIHAT 107


>gi|16306489 cadherin 7, type 2 preproprotein [Homo sapiens]
          Length = 785

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 6/55 (10%)

Query: 225 EYMNDDPGMVDVLYAKVHMKDGSNRLQELVDRVLERFQASGLIVKEWNSVKLHAT 279
           EYM  DP  V  L++ V   DGS      +  +L    AS + + + N+  +HAT
Sbjct: 59  EYMGSDPLYVGKLHSDVDKGDGS------IKYILSGEGASSIFIIDENTGDIHAT 107


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.137    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,596,746
Number of Sequences: 37866
Number of extensions: 611985
Number of successful extensions: 1714
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1687
Number of HSP's gapped (non-prelim): 42
length of query: 357
length of database: 18,247,518
effective HSP length: 103
effective length of query: 254
effective length of database: 14,347,320
effective search space: 3644219280
effective search space used: 3644219280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.