Guide to the Human Genome
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Name: LOC100130274 Sequence: fasta or formatted (439aa) NCBI GI: 242332545
Description:

coiled-coil domain containing 121-like

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.0         57           4
 C cysteine            0.5          2           1
 D aspartate           3.4         15           1
 E glutamate           8.2         36           2
 F phenylalanine       0.9          4           1
 G glycine             4.8         21           2
 H histidine           2.7         12           2
 I isoleucine          1.4          6           1
 K lysine              2.5         11           3
 L leucine            12.8         56           5
 M methionine          1.4          6           1
 N asparagine          1.1          5           1
 P proline             5.9         26           2
 Q glutamine           7.3         32           2
 R arginine           13.2         58           2
 S serine             10.7         47           2
 T threonine           2.7         12           1
 V valine              5.7         25           2
 W tryptophan          0.7          3           1
 Y tyrosine            1.1          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coiled-coil domain containing 121-like 
CCDC121               0.054   coiled-coil domain containing 121 isoform 2 
CCDC121               0.054   coiled-coil domain containing 121 isoform 1 
CCDC121               0.054   coiled-coil domain containing 121 isoform 3 
TNIK                  0.042   TRAF2 and NCK interacting kinase isoform 2 
TNIK                  0.042   TRAF2 and NCK interacting kinase isoform 1 
C14orf45              0.037   hypothetical protein LOC80127 
TNIK                  0.034   TRAF2 and NCK interacting kinase isoform 4 
TNIK                  0.034   TRAF2 and NCK interacting kinase isoform 3 
MAP4K4                0.033   mitogen-activated protein kinase kinase kinase kinas...
MAP4K4                0.033   mitogen-activated protein kinase kinase kinase kinas...
TCHH                  0.033   trichohyalin 
MNS1                  0.032   meiosis-specific nuclear structural 1 
CCDC88B               0.031   coiled-coil domain containing 88 
GOLGA6D               0.029   golgi autoantigen, golgin subfamily a, 6D 
GOLGA6C               0.029   PREDICTED: golgi autoantigen, golgin subfamily a, 6C...
GOLGA6B               0.029   golgi autoantigen, golgin subfamily a, 6B 
PLEC1                 0.029   plectin 1 isoform 11 
PLEC1                 0.029   plectin 1 isoform 10 
PLEC1                 0.029   plectin 1 isoform 8 
PLEC1                 0.029   plectin 1 isoform 7 
PLEC1                 0.029   plectin 1 isoform 6 
PLEC1                 0.029   plectin 1 isoform 3 
PLEC1                 0.029   plectin 1 isoform 2 
PLEC1                 0.029   plectin 1 isoform 1 
LOC100133756          0.028   PREDICTED: hypothetical protein, partial 
CCDC88C               0.028   DVL-binding protein DAPLE 
BZRAP1                0.028   peripheral benzodiazepine receptor-associated prote...
BZRAP1                0.028   peripheral benzodiazepine receptor-associated prote...
CGN                   0.027   cingulin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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