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Search of human proteins with 134152719
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|134152719 CUG triplet repeat, RNA binding protein 2 isoform
4 [Homo sapiens]
(488 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|134152719 CUG triplet repeat, RNA binding protein 2 isoform 4... 960 0.0
gi|68303647 CUG triplet repeat, RNA binding protein 2 isoform 3 ... 947 0.0
gi|68303645 CUG triplet repeat, RNA binding protein 2 isoform 1 ... 946 0.0
gi|134152680 CUG triplet repeat, RNA binding protein 2 isoform 2... 946 0.0
gi|38570081 CUG triplet repeat, RNA-binding protein 1 isoform 2 ... 769 0.0
gi|5729794 CUG triplet repeat, RNA-binding protein 1 isoform 1 [... 768 0.0
gi|71164871 CUG triplet repeat, RNA-binding protein 1 isoform 3 ... 763 0.0
gi|71164894 trinucleotide repeat containing 4 [Homo sapiens] 386 e-107
gi|70780381 bruno-like 6, RNA binding protein [Homo sapiens] 376 e-104
gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo sa... 367 e-101
gi|187761299 bruno-like 4, RNA binding protein isoform 2 [Homo s... 355 5e-98
gi|13123778 bruno-like 4, RNA binding protein isoform 1 [Homo sa... 353 1e-97
gi|187761301 bruno-like 4, RNA binding protein isoform 3 [Homo s... 352 4e-97
gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo s... 298 6e-81
gi|225579097 bruno-like 5, RNA binding protein isoform 2 [Homo s... 143 3e-34
gi|38201714 ELAV-like 1 [Homo sapiens] 82 1e-15
gi|115511032 ELAV (embryonic lethal, abnormal vision, Drosophila... 82 1e-15
gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens] 81 2e-15
gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens] 81 2e-15
gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens] 81 2e-15
gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens] 81 2e-15
gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens] 81 2e-15
gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens] 76 6e-14
gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens] 76 6e-14
gi|187960109 RNA binding motif protein 28 [Homo sapiens] 71 3e-12
gi|93277070 RNA binding motif protein 45 [Homo sapiens] 69 1e-11
gi|51317353 RNA binding motif, single stranded interacting prote... 68 2e-11
gi|51317355 RNA binding motif, single stranded interacting prote... 68 2e-11
gi|51317351 RNA binding motif, single stranded interacting prote... 68 2e-11
gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens] 67 3e-11
>gi|134152719 CUG triplet repeat, RNA binding protein 2 isoform 4
[Homo sapiens]
Length = 488
Score = 960 bits (2482), Expect = 0.0
Identities = 488/488 (100%), Positives = 488/488 (100%)
Query: 1 MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG 60
MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG
Sbjct: 1 MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG 60
Query: 61 CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCN 120
CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCN
Sbjct: 61 CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCN 120
Query: 121 ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSP 180
ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSP
Sbjct: 121 ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSP 180
Query: 181 IVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLG 240
IVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLG
Sbjct: 181 IVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLG 240
Query: 241 AFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPVAASTP 300
AFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPVAASTP
Sbjct: 241 AFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPVAASTP 300
Query: 301 NSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAGTINSMAALNGGLGATGLTNGTAGTM 360
NSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAGTINSMAALNGGLGATGLTNGTAGTM
Sbjct: 301 NSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAGTINSMAALNGGLGATGLTNGTAGTM 360
Query: 361 DALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDIL 420
DALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDIL
Sbjct: 361 DALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDIL 420
Query: 421 QMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKR 480
QMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKR
Sbjct: 421 QMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKR 480
Query: 481 SKNDSKPY 488
SKNDSKPY
Sbjct: 481 SKNDSKPY 488
>gi|68303647 CUG triplet repeat, RNA binding protein 2 isoform 3
[Homo sapiens]
Length = 508
Score = 947 bits (2448), Expect = 0.0
Identities = 484/488 (99%), Positives = 484/488 (99%), Gaps = 4/488 (0%)
Query: 1 MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG 60
MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG
Sbjct: 25 MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG 84
Query: 61 CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCN 120
CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCN
Sbjct: 85 CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCN 144
Query: 121 ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSP 180
ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSP
Sbjct: 145 ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSP 204
Query: 181 IVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLG 240
IVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLG
Sbjct: 205 IVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLG 264
Query: 241 AFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPVAASTP 300
AFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPVAASTP
Sbjct: 265 AFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPVAASTP 324
Query: 301 NSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAGTINSMAALNGGLGATGLTNGTAGTM 360
NSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAG MAALNGGLGATGLTNGTAGTM
Sbjct: 325 NSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAG----MAALNGGLGATGLTNGTAGTM 380
Query: 361 DALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDIL 420
DALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDIL
Sbjct: 381 DALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDIL 440
Query: 421 QMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKR 480
QMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKR
Sbjct: 441 QMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKR 500
Query: 481 SKNDSKPY 488
SKNDSKPY
Sbjct: 501 SKNDSKPY 508
>gi|68303645 CUG triplet repeat, RNA binding protein 2 isoform 1
[Homo sapiens]
Length = 490
Score = 946 bits (2444), Expect = 0.0
Identities = 483/490 (98%), Positives = 485/490 (98%), Gaps = 2/490 (0%)
Query: 1 MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG 60
MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG
Sbjct: 1 MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG 60
Query: 61 CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCN 120
CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCN
Sbjct: 61 CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCN 120
Query: 121 ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSP 180
ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSP
Sbjct: 121 ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSP 180
Query: 181 IVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLG 240
IVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLG
Sbjct: 181 IVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLG 240
Query: 241 AFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPVAASTP 300
AFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPVAASTP
Sbjct: 241 AFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPVAASTP 300
Query: 301 NSTAGAAMNSLTSLGTLQGLAGATVGLNNINAL--AGTINSMAALNGGLGATGLTNGTAG 358
NSTAGAAMNSLTSLGTLQGLAGATVGLNNINAL A ++ MAALNGGLGATGLTNGTAG
Sbjct: 301 NSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAVAQMLSGMAALNGGLGATGLTNGTAG 360
Query: 359 TMDALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQD 418
TMDALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQD
Sbjct: 361 TMDALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQD 420
Query: 419 ILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQL 478
ILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQL
Sbjct: 421 ILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQL 480
Query: 479 KRSKNDSKPY 488
KRSKNDSKPY
Sbjct: 481 KRSKNDSKPY 490
>gi|134152680 CUG triplet repeat, RNA binding protein 2 isoform 2
[Homo sapiens]
Length = 521
Score = 946 bits (2444), Expect = 0.0
Identities = 483/490 (98%), Positives = 485/490 (98%), Gaps = 2/490 (0%)
Query: 1 MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG 60
MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG
Sbjct: 32 MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG 91
Query: 61 CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCN 120
CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCN
Sbjct: 92 CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCN 151
Query: 121 ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSP 180
ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSP
Sbjct: 152 ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSP 211
Query: 181 IVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLG 240
IVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLG
Sbjct: 212 IVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLG 271
Query: 241 AFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPVAASTP 300
AFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPVAASTP
Sbjct: 272 AFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPVAASTP 331
Query: 301 NSTAGAAMNSLTSLGTLQGLAGATVGLNNINAL--AGTINSMAALNGGLGATGLTNGTAG 358
NSTAGAAMNSLTSLGTLQGLAGATVGLNNINAL A ++ MAALNGGLGATGLTNGTAG
Sbjct: 332 NSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAVAQMLSGMAALNGGLGATGLTNGTAG 391
Query: 359 TMDALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQD 418
TMDALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQD
Sbjct: 392 TMDALTQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQD 451
Query: 419 ILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQL 478
ILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQL
Sbjct: 452 ILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQL 511
Query: 479 KRSKNDSKPY 488
KRSKNDSKPY
Sbjct: 512 KRSKNDSKPY 521
>gi|38570081 CUG triplet repeat, RNA-binding protein 1 isoform 2
[Homo sapiens]
Length = 483
Score = 770 bits (1987), Expect = 0.0
Identities = 391/491 (79%), Positives = 433/491 (88%), Gaps = 11/491 (2%)
Query: 1 MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG 60
MNG LDH DQPD DAIKMFVGQ+PR+WSEK+L+ELFE YGAVY+INVLRDRSQNPPQSKG
Sbjct: 1 MNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKG 60
Query: 61 CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCN 120
CCFVTFYTRKAALEAQNALHN+K LPGMHHPIQMKPADSEK+NAVEDRKLFIGM+SKKC
Sbjct: 61 CCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCT 120
Query: 121 ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSP 180
ENDIRVMFS FGQIEECRILRGPDGLSRGCAFVTF+TRAMAQ AIKAMHQ+QTMEGCSSP
Sbjct: 121 ENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP 180
Query: 181 IVVKFADTQKDKEQRRLQQQLAQQMQQLNTAT-WGNLTGLGGLTPQYLALLQQATSSSNL 239
+VVKFADTQKDKEQ+R+ QQL QQMQQ++ A+ WGNL GL L PQYLALLQQ SS NL
Sbjct: 181 MVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALLQQTASSGNL 240
Query: 240 GAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPVAAST 299
S + M G+NA+QLQNLA LAAAA+AAQ + + TNA L+T+SS L LTS A S+
Sbjct: 241 NTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNA--LTTSSSPLSVLTSS-AGSS 297
Query: 300 PNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAGTINSMAALNGGLGATGLTNGTAGT 359
P+S++ ++N + SLG LQ LAGAT GLN G++ MAALNGGLG++GL+NGT T
Sbjct: 298 PSSSSSNSVNPIASLGALQTLAGATAGLN-----VGSLAGMAALNGGLGSSGLSNGTGST 352
Query: 360 MDALTQAYSGIQQYAAAALPTLYSQSLLQQQS--AAGSQKEGPEGANLFIYHLPQEFGDQ 417
M+ALTQAYSGIQQYAAAALPTLY+Q+LL QQS AAGSQKEGPEGANLFIYHLPQEFGDQ
Sbjct: 353 MEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQ 412
Query: 418 DILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQ 477
D+LQMFMPFGNV+SAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ+MNGFQIGMKRLKVQ
Sbjct: 413 DLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 472
Query: 478 LKRSKNDSKPY 488
LKRSKNDSKPY
Sbjct: 473 LKRSKNDSKPY 483
>gi|5729794 CUG triplet repeat, RNA-binding protein 1 isoform 1
[Homo sapiens]
Length = 482
Score = 768 bits (1984), Expect = 0.0
Identities = 390/491 (79%), Positives = 433/491 (88%), Gaps = 12/491 (2%)
Query: 1 MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG 60
MNG LDH DQPD DAIKMFVGQ+PR+WSEK+L+ELFE YGAVY+INVLRDRSQNPPQSKG
Sbjct: 1 MNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKG 60
Query: 61 CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCN 120
CCFVTFYTRKAALEAQNALHN+K LPGMHHPIQMKPADSEK+NAVEDRKLFIGM+SKKC
Sbjct: 61 CCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCT 120
Query: 121 ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSP 180
ENDIRVMFS FGQIEECRILRGPDGLSRGCAFVTF+TRAMAQ AIKAMHQ+QTMEGCSSP
Sbjct: 121 ENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP 180
Query: 181 IVVKFADTQKDKEQRRLQQQLAQQMQQLNTAT-WGNLTGLGGLTPQYLALLQQATSSSNL 239
+VVKFADTQKDKEQ+R+ QQL QQMQQ++ A+ WGNL GL L PQYLALLQQ SS NL
Sbjct: 181 MVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALLQQTASSGNL 240
Query: 240 GAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPVAAST 299
S + M G+NA+QLQNLA LAAAA+AAQ + + TNA L+T+SS L LTS + S+
Sbjct: 241 NTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNA--LTTSSSPLSVLTS--SGSS 296
Query: 300 PNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAGTINSMAALNGGLGATGLTNGTAGT 359
P+S++ ++N + SLG LQ LAGAT GLN G++ MAALNGGLG++GL+NGT T
Sbjct: 297 PSSSSSNSVNPIASLGALQTLAGATAGLN-----VGSLAGMAALNGGLGSSGLSNGTGST 351
Query: 360 MDALTQAYSGIQQYAAAALPTLYSQSLLQQQS--AAGSQKEGPEGANLFIYHLPQEFGDQ 417
M+ALTQAYSGIQQYAAAALPTLY+Q+LL QQS AAGSQKEGPEGANLFIYHLPQEFGDQ
Sbjct: 352 MEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQ 411
Query: 418 DILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQ 477
D+LQMFMPFGNV+SAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ+MNGFQIGMKRLKVQ
Sbjct: 412 DLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 471
Query: 478 LKRSKNDSKPY 488
LKRSKNDSKPY
Sbjct: 472 LKRSKNDSKPY 482
>gi|71164871 CUG triplet repeat, RNA-binding protein 1 isoform 3
[Homo sapiens]
Length = 486
Score = 763 bits (1969), Expect = 0.0
Identities = 390/495 (78%), Positives = 433/495 (87%), Gaps = 16/495 (3%)
Query: 1 MNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKG 60
MNG LDH DQPD DAIKMFVGQ+PR+WSEK+L+ELFE YGAVY+INVLRDRSQNPPQSKG
Sbjct: 1 MNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKG 60
Query: 61 CCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCN 120
CCFVTFYTRKAALEAQNALHN+K LPGMHHPIQMKPADSEK+NAVEDRKLFIGM+SKKC
Sbjct: 61 CCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCT 120
Query: 121 ENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSP 180
ENDIRVMFS FGQIEECRILRGPDGLSRGCAFVTF+TRAMAQ AIKAMHQ+QTMEGCSSP
Sbjct: 121 ENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP 180
Query: 181 IVVKFADTQKDKEQRRLQQQLAQQMQQLNTAT-WGNLTGLGGLTPQYLA----LLQQATS 235
+VVKFADTQKDKEQ+R+ QQL QQMQQ++ A+ WGNL GL L PQYLA LLQQ S
Sbjct: 181 MVVKFADTQKDKEQKRMAQQLQQQMQQISAASVWGNLAGLNTLGPQYLALYLQLLQQTAS 240
Query: 236 SSNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTTSSALGALTSPV 295
S NL S + M G+NA+QLQNLA LAAAA+AAQ + + TNA L+T+SS L LTS
Sbjct: 241 SGNLNTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTPSGTNA--LTTSSSPLSVLTS-- 296
Query: 296 AASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAGTINSMAALNGGLGATGLTNG 355
+ S+P+S++ ++N + SLG LQ LAGAT GLN G++ MAALNGGLG++GL+NG
Sbjct: 297 SGSSPSSSSSNSVNPIASLGALQTLAGATAGLN-----VGSLAGMAALNGGLGSSGLSNG 351
Query: 356 TAGTMDALTQAYSGIQQYAAAALPTLYSQSLLQQQS--AAGSQKEGPEGANLFIYHLPQE 413
T TM+ALTQAYSGIQQYAAAALPTLY+Q+LL QQS AAGSQKEGPEGANLFIYHLPQE
Sbjct: 352 TGSTMEALTQAYSGIQQYAAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQE 411
Query: 414 FGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKR 473
FGDQD+LQMFMPFGNV+SAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ+MNGFQIGMKR
Sbjct: 412 FGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKR 471
Query: 474 LKVQLKRSKNDSKPY 488
LKVQLKRSKNDSKPY
Sbjct: 472 LKVQLKRSKNDSKPY 486
>gi|71164894 trinucleotide repeat containing 4 [Homo sapiens]
Length = 465
Score = 386 bits (992), Expect = e-107
Identities = 231/511 (45%), Positives = 297/511 (58%), Gaps = 82/511 (16%)
Query: 12 DPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKA 71
+PDAIK+FVGQIPR EK+LK +FE +G ++++ V++D+ KGC F+T+ R +
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTG--LHKGCAFLTYCARDS 60
Query: 72 ALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPF 131
AL+AQ+ALH KTLPGM+ PIQ+KPADSE EDRKLF+GM+ K+ + D+R MF PF
Sbjct: 61 ALKAQSALHEQKTLPGMNRPIQVKPADSESRG--EDRKLFVGMLGKQQTDEDVRKMFEPF 118
Query: 132 GQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 191
G I+EC +LRGPDG S+GCAFV F T A AQ AI +H S+T+ G SS +VVKFADT+K+
Sbjct: 119 GTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 178
Query: 192 KEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLGAFSG-----IQ 246
+ RR+QQ Q LG +P L GA+S +Q
Sbjct: 179 RGLRRMQQVATQ---------------LGMFSPIAL----------QFGAYSAYTQALMQ 213
Query: 247 QMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLSTT--SSALGALTSPVAASTPNSTA 304
Q A + A L+ +A AA + NAN L T + + G T P A+TP S
Sbjct: 214 QQAALVAAHSAYLSPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAI 273
Query: 305 GAAMNSLTSLGTLQGLAGATVGLNNINALAGTINSMAALNGGLGATGL----TNGTAGTM 360
AA+ G+N + + A + L G+ A +
Sbjct: 274 PAAL-----------------GVNGYSPVPTQPTGQPAPDA-LYPNGVHPYPAQSPAAPV 315
Query: 361 DALTQAYSGIQQYAAAALPTLYS-----------------------QSLLQQQSAAGSQK 397
D L QAY+G+Q Y AA P YS Q QQQ Q+
Sbjct: 316 DPLQQAYAGMQHYTAA-YPAAYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQR 374
Query: 398 EGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSA 457
EGP+G N+FIYHLPQEF D +ILQMF+PFG+VISAKVF+D+ TN SKCFGFVS+DNP SA
Sbjct: 375 EGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASA 434
Query: 458 QAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 488
QAAIQAMNGFQIGMKRLKVQLKR K+ ++PY
Sbjct: 435 QAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 465
>gi|70780381 bruno-like 6, RNA binding protein [Homo sapiens]
Length = 481
Score = 376 bits (965), Expect = e-104
Identities = 233/486 (47%), Positives = 294/486 (60%), Gaps = 55/486 (11%)
Query: 12 DPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKA 71
D DAIK+FVGQIPR E++LK LFE +G +Y++ VL+DR KGC F+T+ R +
Sbjct: 42 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTG--LHKGCAFLTYCARDS 99
Query: 72 ALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPF 131
AL+AQ+ALH KTLPGM+ PIQ+KPA SE EDRKLF+GM+ K+ E D+R +F PF
Sbjct: 100 ALKAQSALHEQKTLPGMNRPIQVKPAASEGRG--EDRKLFVGMLGKQQGEEDVRRLFQPF 157
Query: 132 GQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 191
G IEEC +LR PDG S+GCAFV F ++ AQ AI+ +H S+TM G SS +VVK ADT ++
Sbjct: 158 GHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIRGLHGSRTMAGASSSLVVKLADTDRE 217
Query: 192 KEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGM 251
+ RR+QQ +A + + A LG A+LQ Q A +
Sbjct: 218 RALRRMQQ-MAGHLGAFHPAP----LPLGACGAYTTAILQH--------------QAALL 258
Query: 252 NALQLQNLATLAAAAAAAQ-TSATSTNANPLSTTSSALGALTSPVAASTPNSTAGAAMNS 310
A Q L +AA AA Q +A S A PL + A+ NS G+
Sbjct: 259 AAAQGPGLGPVAAVAAQMQHVAAFSLVAAPL-------------LPAAAANSPPGSGP-- 303
Query: 311 LTSLGTLQGLAGATVGLNNINALAGTIN----SMAALNGGLGATGLTNGTAGTMDALTQA 366
GTL GL A +G+N L N S N GL + G D L QA
Sbjct: 304 ----GTLPGLP-APIGVNGFGPLTPQTNGQPGSDTLYNNGLSPYPAQS--PGVADPLQQA 356
Query: 367 YSGIQQYAAAALPTLY---SQSLLQQQSAAGSQ-KEGPEGANLFIYHLPQEFGDQDILQM 422
Y+G+ YAAA P+ Y S + QQ SA Q +EGPEG NLFIYHLPQEFGD +++Q
Sbjct: 357 YAGMHHYAAA-YPSAYAPVSTAFPQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQT 415
Query: 423 FMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSK 482
F+PFG V+SAKVF+D+ TN SKCFGFVS+DNP SAQ AIQAMNGFQIGMKRLKVQLKR K
Sbjct: 416 FLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPK 475
Query: 483 NDSKPY 488
+ ++PY
Sbjct: 476 DANRPY 481
Score = 43.1 bits (100), Expect = 6e-04
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 4 ALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCF 63
AL + P+ +F+ +P+ + + EL + F P+GAV V DR+ N QSK F
Sbjct: 384 ALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATN--QSKCFGF 441
Query: 64 VTFYTRKAALEAQNALHNIKTLPGMHH-PIQMK-PADSEK 101
V+F +A A A++ + GM +Q+K P D+ +
Sbjct: 442 VSFDNPTSAQTAIQAMNGFQI--GMKRLKVQLKRPKDANR 479
>gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo
sapiens]
Length = 485
Score = 367 bits (941), Expect = e-101
Identities = 228/496 (45%), Positives = 291/496 (58%), Gaps = 70/496 (14%)
Query: 12 DPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKA 71
D DAIK+FVGQIPR EK+LK LFE +G +Y++ VL+D KGC F+T+ R +
Sbjct: 41 DLDAIKLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTG--MHKGCAFLTYCARDS 98
Query: 72 ALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPF 131
A++AQ ALH KTLPGM PIQ+KPADSE S DRKLF+GM++K+ +E D+ +F PF
Sbjct: 99 AIKAQTALHEQKTLPGMARPIQVKPADSE-SRGGRDRKLFVGMLNKQQSEEDVLRLFQPF 157
Query: 132 GQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 191
G I+EC +LRGPDG S+GCAFV FS+ AQ AI A+H SQTM G SS +VVKFADT K+
Sbjct: 158 GVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKE 217
Query: 192 KEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGM 251
+ RR+QQ + Q LG LTP
Sbjct: 218 RTLRRMQQMVGQ---------------LGILTPSL------------------------- 237
Query: 252 NALQLQNLATLAAAAAAAQTSATSTNANPLSTTSS-------ALGALTSPVAASTPNSTA 304
L + A A QT+ ST+ + LS + +GA++ +TP + A
Sbjct: 238 -TLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPA 296
Query: 305 GAAMNSLTSLGT--LQGL-AGATVGLNNINALAGTINSMAALNGGLGATGLTNGTAGTMD 361
+ ++S LGT + GL A T G + G ++ + G + +
Sbjct: 297 -SGLHSPPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYAN-GLVPYPAQSPTVAE 354
Query: 362 ALTQAYSGIQQY-----AAAALPTLYS----QSLLQQQSAAGSQKEGPEGANLFIYHLPQ 412
L A+SG+QQY AA P +S LLQQQ Q+EGPEG NLFIYHLPQ
Sbjct: 355 TLHPAFSGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQ-----QREGPEGCNLFIYHLPQ 409
Query: 413 EFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMK 472
EFGD ++ QMF+PFGN+IS+KVF+D+ TN SKCFGFVS+DNP SAQAAIQAMNGFQIGMK
Sbjct: 410 EFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMK 469
Query: 473 RLKVQLKRSKNDSKPY 488
RLKVQLKR K+ PY
Sbjct: 470 RLKVQLKRPKDPGHPY 485
Score = 42.0 bits (97), Expect = 0.001
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 5 LDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 64
L + P+ +F+ +P+ + + EL ++F P+G + V DR+ N QSK FV
Sbjct: 389 LQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATN--QSKCFGFV 446
Query: 65 TF---YTRKAALEAQN 77
+F + +AA++A N
Sbjct: 447 SFDNPASAQAAIQAMN 462
Score = 39.7 bits (91), Expect = 0.006
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 384 QSLLQQQ-SAAGSQKEGPEGAN-----------LFIYHLPQEFGDQDILQMFMPFGNVIS 431
Q LLQ + S GS P G LF+ +P+ ++D+ +F FG +
Sbjct: 14 QQLLQPRPSPVGSSGPEPPGGQPDGMKDLDAIKLFVGQIPRHLDEKDLKPLFEQFGRIYE 73
Query: 432 AKVFIDKQTNLSKCFGFVSY---DNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSK 486
V D T + K F++Y D+ + AQ A+ GM R +Q+K + ++S+
Sbjct: 74 LTVLKDPYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLP-GMAR-PIQVKPADSESR 129
>gi|187761299 bruno-like 4, RNA binding protein isoform 2 [Homo
sapiens]
Length = 485
Score = 355 bits (911), Expect = 5e-98
Identities = 225/514 (43%), Positives = 291/514 (56%), Gaps = 87/514 (16%)
Query: 1 MNGALDHSD-------QPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQ 53
MNG L HS D DAIK+F+GQIPR+ EK+LK LFE +G +Y++ VL+DR
Sbjct: 33 MNG-LSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFT 91
Query: 54 NPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAV-------- 105
KGC F+T+ R++AL+AQ+ALH KTLPGM+ PIQ+KPADSE
Sbjct: 92 G--MHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPS 149
Query: 106 EDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAI 165
+DRKLF+GM++K+ +E+D+R +F FG IEEC ILRGPDG S+GCAFV +S+ A AQ AI
Sbjct: 150 QDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAI 209
Query: 166 KAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQ 225
A+H SQTM G SS +VVKFADT K++ RR+QQ +A QM N G
Sbjct: 210 NALHGSQTMPGASSSLVVKFADTDKERTMRRMQQ-MAGQMGMFNPMA----IPFGAYGAY 264
Query: 226 YLALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAA-AAAAAQTSATSTNANPLSTT 284
A+ QQA +++ + MA A Q+Q +A L AAA + TS + P T
Sbjct: 265 AQAMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGIT 324
Query: 285 SSALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAGTINSMAALN 344
+ A+ ++ SP+ + G G N G + A
Sbjct: 325 APAVPSIPSPIGVN--------------------GFTGLPPQAN------GQPAAEAVFA 358
Query: 345 GGLGATGLTNGTAGTMDALTQAYSGIQQYAA-AALPTLYSQ---------SLLQQQSAAG 394
G+ + TA D L QAY+G+QQYA AA P Y Q ++ QQ
Sbjct: 359 NGIHPYPAQSPTAA--DPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQ---- 412
Query: 395 SQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNP 454
Q+EGPEG NLFIYHLPQEFGD +++QMF+PFG FVS+DNP
Sbjct: 413 -QREGPEGCNLFIYHLPQEFGDAELMQMFLPFG--------------------FVSFDNP 451
Query: 455 VSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 488
SAQ AIQAMNGFQIGMKRLKVQLKR K+ ++PY
Sbjct: 452 ASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 485
>gi|13123778 bruno-like 4, RNA binding protein isoform 1 [Homo
sapiens]
Length = 486
Score = 353 bits (907), Expect = 1e-97
Identities = 227/514 (44%), Positives = 293/514 (57%), Gaps = 86/514 (16%)
Query: 1 MNGALDHSD-------QPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQ 53
MNG L HS D DAIK+F+GQIPR+ EK+LK LFE +G +Y++ VL+DR
Sbjct: 33 MNG-LSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFT 91
Query: 54 NPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAV-------- 105
KGC F+T+ R++AL+AQ+ALH KTLPGM+ PIQ+KPADSE
Sbjct: 92 G--MHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPS 149
Query: 106 EDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAI 165
+DRKLF+GM++K+ +E+D+R +F FG IEEC ILRGPDG S+GCAFV +S+ A AQ AI
Sbjct: 150 QDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAI 209
Query: 166 KAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQ 225
A+H SQTM G SS +VVKFADT K++ RR+QQ +A QM N G G Q
Sbjct: 210 NALHGSQTMPGASSSLVVKFADTDKERTMRRMQQ-MAGQMGMFNPMAIP--FGAYGAYAQ 266
Query: 226 YLALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAA-AAAAAQTSATSTNANPLSTT 284
L + QQA +++ + MA A Q+Q +A L AAA + TS + P T
Sbjct: 267 AL-MQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGIT 325
Query: 285 SSALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAGTINSMAALN 344
+ A+ ++ SP+ + G G N G + A
Sbjct: 326 APAVPSIPSPIGVN--------------------GFTGLPPQAN------GQPAAEAVFA 359
Query: 345 GGLGATGLTNGTAGTMDALTQAYSGIQQYAA-AALPTLYSQ---------SLLQQQSAAG 394
G+ + TA D L QAY+G+QQYA AA P Y Q ++ QQ
Sbjct: 360 NGIHPYPAQSPTAA--DPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQ---- 413
Query: 395 SQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNP 454
Q+EGPEG NLFIYHLPQEFGD +++QMF+PFG FVS+DNP
Sbjct: 414 -QREGPEGCNLFIYHLPQEFGDAELMQMFLPFG--------------------FVSFDNP 452
Query: 455 VSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 488
SAQ AIQAMNGFQIGMKRLKVQLKR K+ ++PY
Sbjct: 453 ASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 486
>gi|187761301 bruno-like 4, RNA binding protein isoform 3 [Homo
sapiens]
Length = 484
Score = 352 bits (903), Expect = 4e-97
Identities = 224/513 (43%), Positives = 289/513 (56%), Gaps = 86/513 (16%)
Query: 1 MNGALDHSD-------QPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQ 53
MNG L HS D DAIK+F+GQIPR+ EK+LK LFE +G +Y++ VL+DR
Sbjct: 33 MNG-LSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFT 91
Query: 54 NPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVE------- 106
KGC F+T+ R++AL+AQ+ALH KTLPGM+ PIQ+KPADSE
Sbjct: 92 G--MHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPS 149
Query: 107 DRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIK 166
RKLF+GM++K+ +E+D+R +F FG IEEC ILRGPDG S+GCAFV +S+ A AQ AI
Sbjct: 150 HRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAIN 209
Query: 167 AMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQY 226
A+H SQTM G SS +VVKFADT K++ RR+QQ +A QM N G
Sbjct: 210 ALHGSQTMPGASSSLVVKFADTDKERTMRRMQQ-MAGQMGMFNPMA----IPFGAYGAYA 264
Query: 227 LALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAA-AAAAAQTSATSTNANPLSTTS 285
A+ QQA +++ + MA A Q+Q +A L AAA + TS + P T+
Sbjct: 265 QAMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITA 324
Query: 286 SALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAGTINSMAALNG 345
A+ ++ SP+ + G G N G + A
Sbjct: 325 PAVPSIPSPIGVN--------------------GFTGLPPQAN------GQPAAEAVFAN 358
Query: 346 GLGATGLTNGTAGTMDALTQAYSGIQQYAA-AALPTLYSQ---------SLLQQQSAAGS 395
G+ + TA D L QAY+G+QQYA AA P Y Q ++ QQ
Sbjct: 359 GIHPYPAQSPTAA--DPLQQAYAGVQQYAGPAAYPAAYGQISQAFPQPPPMIPQQ----- 411
Query: 396 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 455
Q+EGPEG NLFIYHLPQEFGD +++QMF+PFG FVS+DNP
Sbjct: 412 QREGPEGCNLFIYHLPQEFGDAELMQMFLPFG--------------------FVSFDNPA 451
Query: 456 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 488
SAQ AIQAMNGFQIGMKRLKVQLKR K+ ++PY
Sbjct: 452 SAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 484
>gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo
sapiens]
Length = 448
Score = 298 bits (764), Expect = 6e-81
Identities = 205/497 (41%), Positives = 269/497 (54%), Gaps = 90/497 (18%)
Query: 1 MNGALDHSD-------QPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQ 53
MNG L HS D DAIK+F+GQIPR+ EK+LK LFE +G +Y++ VL+DR
Sbjct: 33 MNG-LSHSPGNPSTIPMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFT 91
Query: 54 NPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIG 113
KGC F+T+ R++AL+AQ+ALH KTLPGM+ PIQ+KPADSE EDRKLF+G
Sbjct: 92 G--MHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRG--EDRKLFVG 147
Query: 114 MVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQT 173
M++K+ +E+D+R +F FG IEEC ILRGPDG S+GCAFV +S+ A AQ AI A+H SQT
Sbjct: 148 MLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQT 207
Query: 174 MEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQA 233
M G SS +VVKFADT K++ RR+QQ +A QM N G G Q L + QQA
Sbjct: 208 MPGASSSLVVKFADTDKERTMRRMQQ-MAGQMGMFNPMAIP--FGAYGAYAQAL-MQQQA 263
Query: 234 TSSSNLGAFSGIQQMAGMNALQLQNLATLAA-AAAAAQTSATSTNANPLSTTSSALGALT 292
+++ + MA A Q+Q +A L AAA + TS + P T+ A+ ++
Sbjct: 264 ALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIP 323
Query: 293 SPVAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNINALAGTINSMAALNGGLGATGL 352
SP+ + G G N G + A G+
Sbjct: 324 SPIGVN--------------------GFTGLPPQAN------GQPAAEAVFANGIHPYPA 357
Query: 353 TNGTAGTMDALTQAYSGIQQYAA-AALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLP 411
+ TA D L QAY+G+QQYA AA P Y Q + P+ + +P
Sbjct: 358 QSPTAA--DPLQQAYAGVQQYAGPAAYPAAYGQ----------ISQAFPQPPPM----IP 401
Query: 412 QEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGM 471
Q+ + GFVS+DNP SAQ AIQAMNGFQIGM
Sbjct: 402 QQQRE------------------------------GFVSFDNPASAQTAIQAMNGFQIGM 431
Query: 472 KRLKVQLKRSKNDSKPY 488
KRLKVQLKR K+ ++PY
Sbjct: 432 KRLKVQLKRPKDANRPY 448
>gi|225579097 bruno-like 5, RNA binding protein isoform 2 [Homo
sapiens]
Length = 320
Score = 143 bits (361), Expect = 3e-34
Identities = 120/346 (34%), Positives = 163/346 (47%), Gaps = 65/346 (18%)
Query: 88 MHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLS 147
M PIQ+KPADSE S DRKLF+GM++K+ +E D+ +F PFG I+EC +LRGPDG S
Sbjct: 1 MARPIQVKPADSE-SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSS 59
Query: 148 RGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQ 207
+GCAFV FS+ AQ AI A+H SQTM G SS +VVKFADT K++ RR+QQ + Q
Sbjct: 60 KGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ---- 115
Query: 208 LNTATWGNLTGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAA 267
LG LTP L + A A
Sbjct: 116 -----------LGILTPSL--------------------------TLPFSPYSAYAQALM 138
Query: 268 AAQTSATSTNANPLSTTSS-------ALGALTSPVAASTPNSTAGAAMNSLTSLGT--LQ 318
QT+ ST+ + LS + +GA++ +TP + A + ++S LGT +
Sbjct: 139 QQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPA-SGLHSPPLLGTTAVP 197
Query: 319 GL-AGATVGLNNINALAGTINSMAALNGGLGATGLTNGTAGTMDALTQAYSGIQQY---- 373
GL A T G + G ++ + G + + L A+SG+QQY
Sbjct: 198 GLVAPITNGFAGVVPFPGGHPALETVYAN-GLVPYPAQSPTVAETLHPAFSGVQQYTAMY 256
Query: 374 -AAAALPTLYS----QSLLQQQSAAGSQKEGPEG--ANLFIYHLPQ 412
AA P +S LLQQQ G + G + L YH Q
Sbjct: 257 PTAAITPIAHSVPQPPPLLQQQQREGVWRHGADADVPTLRQYHFLQ 302
Score = 64.3 bits (155), Expect = 2e-10
Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 17 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
K+FVG + + SE+++ LF+P+G + + VLR + SKGC FV F + A A
Sbjct: 21 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGS---SKGCAFVKFSSHTEAQAAI 77
Query: 77 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMV 115
+ALH +T+PG + +K AD++K + + +G +
Sbjct: 78 HALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQL 116
Score = 45.4 bits (106), Expect = 1e-04
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 389 QQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGF 448
Q A S+ G LF+ L ++ ++D+L++F PFG VI + SK F
Sbjct: 6 QVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAF 64
Query: 449 VSYDNPVSAQAAIQAMNGFQ 468
V + + AQAAI A++G Q
Sbjct: 65 VKFSSHTEAQAAIHALHGSQ 84
>gi|38201714 ELAV-like 1 [Homo sapiens]
Length = 326
Score = 82.0 bits (201), Expect = 1e-15
Identities = 62/204 (30%), Positives = 94/204 (46%), Gaps = 11/204 (5%)
Query: 2 NGALDHSDQP---DPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQS 58
NG DH + D + V +P++ ++ EL+ LF G V ++RD+ S
Sbjct: 3 NGYEDHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAG--HS 60
Query: 59 KGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKK 118
G FV + T K A A N L+ ++ +P+ S ++D L+I + +
Sbjct: 61 LGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPS----SEVIKDANLYISGLPRT 116
Query: 119 CNENDIRVMFSPFGQIEECRIL-RGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGC 177
+ D+ MFS FG+I R+L GLSRG AF+ F R+ A+ AI + + G
Sbjct: 117 MTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFN-GHKPPGS 175
Query: 178 SSPIVVKFADTQKDKEQRRLQQQL 201
S PI VKFA + L QL
Sbjct: 176 SEPITVKFAANPNQNKNVALLSQL 199
Score = 63.5 bits (153), Expect = 4e-10
Identities = 34/79 (43%), Positives = 49/79 (62%)
Query: 405 LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM 464
+FIY+L Q+ + + QMF PFG V + KV D TN K FGFV+ N A AI ++
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 465 NGFQIGMKRLKVQLKRSKN 483
NG+++G K L+V K +K+
Sbjct: 306 NGYRLGDKILQVSFKTNKS 324
Score = 55.1 bits (131), Expect = 1e-07
Identities = 32/93 (34%), Positives = 49/93 (52%)
Query: 374 AAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAK 433
A L L QS + S A E + ANL+I LP+ +D+ MF FG +I+++
Sbjct: 77 AINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSR 136
Query: 434 VFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNG 466
V +D+ T LS+ F+ +D A+ AI + NG
Sbjct: 137 VLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 53.1 bits (126), Expect = 5e-07
Identities = 27/81 (33%), Positives = 42/81 (51%)
Query: 404 NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQA 463
NL + +LPQ ++ +F G V SAK+ DK S +GFV+Y A+ AI
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 464 MNGFQIGMKRLKVQLKRSKND 484
+NG ++ K +KV R ++
Sbjct: 81 LNGLRLQSKTIKVSYARPSSE 101
Score = 31.6 bits (70), Expect = 1.7
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 18 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
+F+ + + E L ++F P+GAV + V+RD + N + KG FVT + A A
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTN--KCKGFGFVTMTNYEEAAMAIA 303
Query: 78 ALHNIK 83
+L+ +
Sbjct: 304 SLNGYR 309
>gi|115511032 ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B) [Homo sapiens]
Length = 359
Score = 82.0 bits (201), Expect = 1e-15
Identities = 56/197 (28%), Positives = 95/197 (48%), Gaps = 8/197 (4%)
Query: 8 SDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFY 67
S + + V +P++ +++ELK LF G + ++RD+ QS G FV +
Sbjct: 31 SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITG--QSLGYGFVNYI 88
Query: 68 TRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVM 127
K A +A N L+ ++ +P+ S ++ D L++ + K + ++ +
Sbjct: 89 DPKDAEKAINTLNGLRLQTKTIKVSYARPS----SASIRDANLYVSGLPKTMTQKELEQL 144
Query: 128 FSPFGQIEECRILRGP-DGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFA 186
FS +G+I RIL G+SRG F+ F R A+ AIK ++ Q G + PI VKFA
Sbjct: 145 FSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN-GQKPPGATEPITVKFA 203
Query: 187 DTQKDKEQRRLQQQLAQ 203
+ K + + QL Q
Sbjct: 204 NNPSQKTNQAILSQLYQ 220
Score = 61.2 bits (147), Expect = 2e-09
Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 391 SAAGSQKEGPEGAN--LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGF 448
S AG G G +F+Y+L + + + QMF PFG V + KV D TN K FGF
Sbjct: 262 SLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGF 321
Query: 449 VSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSK 482
V+ N A AI ++NG+++G + L+V K +K
Sbjct: 322 VTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 355
Score = 56.2 bits (134), Expect = 6e-08
Identities = 28/82 (34%), Positives = 45/82 (54%)
Query: 404 NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQA 463
NL + +LPQ +++ +F G + S K+ DK T S +GFV+Y +P A+ AI
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 464 MNGFQIGMKRLKVQLKRSKNDS 485
+NG ++ K +KV R + S
Sbjct: 100 LNGLRLQTKTIKVSYARPSSAS 121
Score = 54.7 bits (130), Expect = 2e-07
Identities = 20/64 (31%), Positives = 43/64 (67%)
Query: 403 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 462
ANL++ LP+ +++ Q+F +G +I++++ +D+ T +S+ GF+ +D + A+ AI+
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Query: 463 AMNG 466
+NG
Sbjct: 185 GLNG 188
Score = 31.2 bits (69), Expect = 2.2
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 18 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
+FV + E L ++F P+GAV + V+RD + N + KG FVT A A
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTN--KCKGFGFVTMTNYDEAAMAIA 335
Query: 78 ALHNIK 83
+L+ +
Sbjct: 336 SLNGYR 341
>gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens]
Length = 380
Score = 81.3 bits (199), Expect = 2e-15
Identities = 55/193 (28%), Positives = 93/193 (48%), Gaps = 8/193 (4%)
Query: 12 DPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKA 71
D + V +P++ +++E + LF G + ++RD+ QS G FV + K
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG--QSLGYGFVNYIDPKD 99
Query: 72 ALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPF 131
A +A N L+ ++ +P+ S ++ D L++ + K + ++ +FS +
Sbjct: 100 AEKAINTLNGLRLQTKTIKVSYARPS----SASIRDANLYVSGLPKTMTQKELEQLFSQY 155
Query: 132 GQIEECRILRGP-DGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQK 190
G+I RIL G+SRG F+ F R A+ AIK ++ Q G + PI VKFA+
Sbjct: 156 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN-GQKPSGATEPITVKFANNPS 214
Query: 191 DKEQRRLQQQLAQ 203
K + L QL Q
Sbjct: 215 QKSSQALLSQLYQ 227
Score = 58.2 bits (139), Expect = 2e-08
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 405 LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM 464
+F+Y+L + + + Q+F PFG V + KV D TN K FGFV+ N A AI ++
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 465 NGFQIGMKRLKVQLKRSK 482
NG+++G + L+V K +K
Sbjct: 359 NGYRLGDRVLQVSFKTNK 376
Score = 55.5 bits (132), Expect = 1e-07
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 404 NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQA 463
NL + +LPQ ++ +F G + S K+ DK T S +GFV+Y +P A+ AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 464 MNGFQIGMKRLKVQLKRSKNDS 485
+NG ++ K +KV R + S
Sbjct: 107 LNGLRLQTKTIKVSYARPSSAS 128
Score = 55.1 bits (131), Expect = 1e-07
Identities = 23/84 (27%), Positives = 51/84 (60%)
Query: 403 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 462
ANL++ LP+ +++ Q+F +G +I++++ +D+ T +S+ GF+ +D + A+ AI+
Sbjct: 132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191
Query: 463 AMNGFQIGMKRLKVQLKRSKNDSK 486
+NG + + +K + N S+
Sbjct: 192 GLNGQKPSGATEPITVKFANNPSQ 215
Score = 32.3 bits (72), Expect = 1.00
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 18 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
+FV + E L +LF P+GAV + V+RD + N + KG FVT A A
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTN--KCKGFGFVTMTNYDEAAMAIA 356
Query: 78 ALHNIK 83
+L+ +
Sbjct: 357 SLNGYR 362
>gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens]
Length = 369
Score = 81.3 bits (199), Expect = 2e-15
Identities = 55/193 (28%), Positives = 93/193 (48%), Gaps = 8/193 (4%)
Query: 12 DPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKA 71
D + V +P++ +++E + LF G + ++RD+ QS G FV + K
Sbjct: 45 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG--QSLGYGFVNYIDPKD 102
Query: 72 ALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPF 131
A +A N L+ ++ +P+ S ++ D L++ + K + ++ +FS +
Sbjct: 103 AEKAINTLNGLRLQTKTIKVSYARPS----SASIRDANLYVSGLPKTMTQKELEQLFSQY 158
Query: 132 GQIEECRILRGP-DGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQK 190
G+I RIL G+SRG F+ F R A+ AIK ++ Q G + PI VKFA+
Sbjct: 159 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN-GQKPSGATEPITVKFANNPS 217
Query: 191 DKEQRRLQQQLAQ 203
K + L QL Q
Sbjct: 218 QKSSQALLSQLYQ 230
Score = 58.2 bits (139), Expect = 2e-08
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 405 LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM 464
+F+Y+L + + + Q+F PFG V + KV D TN K FGFV+ N A AI ++
Sbjct: 288 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 347
Query: 465 NGFQIGMKRLKVQLKRSK 482
NG+++G + L+V K +K
Sbjct: 348 NGYRLGDRVLQVSFKTNK 365
Score = 55.5 bits (132), Expect = 1e-07
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 404 NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQA 463
NL + +LPQ ++ +F G + S K+ DK T S +GFV+Y +P A+ AI
Sbjct: 50 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 109
Query: 464 MNGFQIGMKRLKVQLKRSKNDS 485
+NG ++ K +KV R + S
Sbjct: 110 LNGLRLQTKTIKVSYARPSSAS 131
Score = 55.1 bits (131), Expect = 1e-07
Identities = 23/84 (27%), Positives = 51/84 (60%)
Query: 403 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 462
ANL++ LP+ +++ Q+F +G +I++++ +D+ T +S+ GF+ +D + A+ AI+
Sbjct: 135 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 194
Query: 463 AMNGFQIGMKRLKVQLKRSKNDSK 486
+NG + + +K + N S+
Sbjct: 195 GLNGQKPSGATEPITVKFANNPSQ 218
Score = 32.3 bits (72), Expect = 1.00
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 18 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
+FV + E L +LF P+GAV + V+RD + N + KG FVT A A
Sbjct: 288 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTN--KCKGFGFVTMTNYDEAAMAIA 345
Query: 78 ALHNIK 83
+L+ +
Sbjct: 346 SLNGYR 351
>gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens]
Length = 366
Score = 81.3 bits (199), Expect = 2e-15
Identities = 55/193 (28%), Positives = 93/193 (48%), Gaps = 8/193 (4%)
Query: 12 DPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKA 71
D + V +P++ +++E + LF G + ++RD+ QS G FV + K
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG--QSLGYGFVNYIDPKD 99
Query: 72 ALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPF 131
A +A N L+ ++ +P+ S ++ D L++ + K + ++ +FS +
Sbjct: 100 AEKAINTLNGLRLQTKTIKVSYARPS----SASIRDANLYVSGLPKTMTQKELEQLFSQY 155
Query: 132 GQIEECRILRGP-DGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQK 190
G+I RIL G+SRG F+ F R A+ AIK ++ Q G + PI VKFA+
Sbjct: 156 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN-GQKPSGATEPITVKFANNPS 214
Query: 191 DKEQRRLQQQLAQ 203
K + L QL Q
Sbjct: 215 QKSSQALLSQLYQ 227
Score = 58.2 bits (139), Expect = 2e-08
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 405 LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM 464
+F+Y+L + + + Q+F PFG V + KV D TN K FGFV+ N A AI ++
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 465 NGFQIGMKRLKVQLKRSK 482
NG+++G + L+V K +K
Sbjct: 345 NGYRLGDRVLQVSFKTNK 362
Score = 55.5 bits (132), Expect = 1e-07
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 404 NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQA 463
NL + +LPQ ++ +F G + S K+ DK T S +GFV+Y +P A+ AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 464 MNGFQIGMKRLKVQLKRSKNDS 485
+NG ++ K +KV R + S
Sbjct: 107 LNGLRLQTKTIKVSYARPSSAS 128
Score = 55.1 bits (131), Expect = 1e-07
Identities = 23/84 (27%), Positives = 51/84 (60%)
Query: 403 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 462
ANL++ LP+ +++ Q+F +G +I++++ +D+ T +S+ GF+ +D + A+ AI+
Sbjct: 132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191
Query: 463 AMNGFQIGMKRLKVQLKRSKNDSK 486
+NG + + +K + N S+
Sbjct: 192 GLNGQKPSGATEPITVKFANNPSQ 215
Score = 32.3 bits (72), Expect = 1.00
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 18 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
+FV + E L +LF P+GAV + V+RD + N + KG FVT A A
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTN--KCKGFGFVTMTNYDEAAMAIA 342
Query: 78 ALHNIK 83
+L+ +
Sbjct: 343 SLNGYR 348
>gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens]
Length = 383
Score = 81.3 bits (199), Expect = 2e-15
Identities = 55/193 (28%), Positives = 93/193 (48%), Gaps = 8/193 (4%)
Query: 12 DPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKA 71
D + V +P++ +++E + LF G + ++RD+ QS G FV + K
Sbjct: 59 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG--QSLGYGFVNYIDPKD 116
Query: 72 ALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPF 131
A +A N L+ ++ +P+ S ++ D L++ + K + ++ +FS +
Sbjct: 117 AEKAINTLNGLRLQTKTIKVSYARPS----SASIRDANLYVSGLPKTMTQKELEQLFSQY 172
Query: 132 GQIEECRILRGP-DGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQK 190
G+I RIL G+SRG F+ F R A+ AIK ++ Q G + PI VKFA+
Sbjct: 173 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN-GQKPSGATEPITVKFANNPS 231
Query: 191 DKEQRRLQQQLAQ 203
K + L QL Q
Sbjct: 232 QKSSQALLSQLYQ 244
Score = 58.2 bits (139), Expect = 2e-08
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 405 LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM 464
+F+Y+L + + + Q+F PFG V + KV D TN K FGFV+ N A AI ++
Sbjct: 302 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 361
Query: 465 NGFQIGMKRLKVQLKRSK 482
NG+++G + L+V K +K
Sbjct: 362 NGYRLGDRVLQVSFKTNK 379
Score = 55.5 bits (132), Expect = 1e-07
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 404 NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQA 463
NL + +LPQ ++ +F G + S K+ DK T S +GFV+Y +P A+ AI
Sbjct: 64 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 123
Query: 464 MNGFQIGMKRLKVQLKRSKNDS 485
+NG ++ K +KV R + S
Sbjct: 124 LNGLRLQTKTIKVSYARPSSAS 145
Score = 55.1 bits (131), Expect = 1e-07
Identities = 23/84 (27%), Positives = 51/84 (60%)
Query: 403 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 462
ANL++ LP+ +++ Q+F +G +I++++ +D+ T +S+ GF+ +D + A+ AI+
Sbjct: 149 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 208
Query: 463 AMNGFQIGMKRLKVQLKRSKNDSK 486
+NG + + +K + N S+
Sbjct: 209 GLNGQKPSGATEPITVKFANNPSQ 232
Score = 32.3 bits (72), Expect = 1.00
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 18 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
+FV + E L +LF P+GAV + V+RD + N + KG FVT A A
Sbjct: 302 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTN--KCKGFGFVTMTNYDEAAMAIA 359
Query: 78 ALHNIK 83
+L+ +
Sbjct: 360 SLNGYR 365
>gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens]
Length = 366
Score = 81.3 bits (199), Expect = 2e-15
Identities = 55/193 (28%), Positives = 93/193 (48%), Gaps = 8/193 (4%)
Query: 12 DPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKA 71
D + V +P++ +++E + LF G + ++RD+ QS G FV + K
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG--QSLGYGFVNYIDPKD 99
Query: 72 ALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPF 131
A +A N L+ ++ +P+ S ++ D L++ + K + ++ +FS +
Sbjct: 100 AEKAINTLNGLRLQTKTIKVSYARPS----SASIRDANLYVSGLPKTMTQKELEQLFSQY 155
Query: 132 GQIEECRILRGP-DGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQK 190
G+I RIL G+SRG F+ F R A+ AIK ++ Q G + PI VKFA+
Sbjct: 156 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN-GQKPSGATEPITVKFANNPS 214
Query: 191 DKEQRRLQQQLAQ 203
K + L QL Q
Sbjct: 215 QKSSQALLSQLYQ 227
Score = 58.2 bits (139), Expect = 2e-08
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 405 LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM 464
+F+Y+L + + + Q+F PFG V + KV D TN K FGFV+ N A AI ++
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 465 NGFQIGMKRLKVQLKRSK 482
NG+++G + L+V K +K
Sbjct: 345 NGYRLGDRVLQVSFKTNK 362
Score = 55.5 bits (132), Expect = 1e-07
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 404 NLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQA 463
NL + +LPQ ++ +F G + S K+ DK T S +GFV+Y +P A+ AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 464 MNGFQIGMKRLKVQLKRSKNDS 485
+NG ++ K +KV R + S
Sbjct: 107 LNGLRLQTKTIKVSYARPSSAS 128
Score = 55.1 bits (131), Expect = 1e-07
Identities = 23/84 (27%), Positives = 51/84 (60%)
Query: 403 ANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 462
ANL++ LP+ +++ Q+F +G +I++++ +D+ T +S+ GF+ +D + A+ AI+
Sbjct: 132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191
Query: 463 AMNGFQIGMKRLKVQLKRSKNDSK 486
+NG + + +K + N S+
Sbjct: 192 GLNGQKPSGATEPITVKFANNPSQ 215
Score = 32.3 bits (72), Expect = 1.00
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 18 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
+FV + E L +LF P+GAV + V+RD + N + KG FVT A A
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTN--KCKGFGFVTMTNYDEAAMAIA 342
Query: 78 ALHNIK 83
+L+ +
Sbjct: 343 SLNGYR 348
>gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]
Length = 367
Score = 76.3 bits (186), Expect = 6e-14
Identities = 58/203 (28%), Positives = 96/203 (47%), Gaps = 14/203 (6%)
Query: 2 NGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGC 61
NGA D S + V +P++ ++ E K LF G + ++RD+ QS G
Sbjct: 31 NGATDDSKT------NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITG--QSLGY 82
Query: 62 CFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNE 121
FV + A +A N L+ +K +P+ S ++ D L++ + K ++
Sbjct: 83 GFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPS----SASIRDANLYVSGLPKTMSQ 138
Query: 122 NDIRVMFSPFGQIEECRILRGP-DGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSP 180
++ +FS +G+I RIL G+SRG F+ F R A+ AIK ++ + + G + P
Sbjct: 139 KEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEP 197
Query: 181 IVVKFADTQKDKEQRRLQQQLAQ 203
I VKFA+ K + L L Q
Sbjct: 198 ITVKFANNPSQKTGQALLTHLYQ 220
Score = 68.6 bits (166), Expect = 1e-11
Identities = 92/394 (23%), Positives = 158/394 (40%), Gaps = 74/394 (18%)
Query: 102 SNAVEDRK--LFIGMVSKKCNENDIRVMFSPFGQIEECRILRGP-DGLSRGCAFVTFSTR 158
+ A +D K L + + + +++ + +F G IE C+++R G S G FV +S
Sbjct: 31 NGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDP 90
Query: 159 AMAQNAIKAMH----QSQTME---GCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTA 211
A AI ++ Q++T++ S ++ A+ + + Q+ +M+QL
Sbjct: 91 NDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQK---EMEQL--- 144
Query: 212 TWGNLTGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQ-LQNLATLAAAAAAAQ 270
+ G + + + Q S +G +++ A++ L L AA
Sbjct: 145 ----FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITV 200
Query: 271 TSATSTNANPLSTTSSALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNI 330
A NP T AL + + S+ AG ++ T L L G+ +
Sbjct: 201 KFAN----NPSQKTGQAL---LTHLYQSSARRYAGP-LHHQTQRFRLDNLLNMAYGVKSP 252
Query: 331 NALAGTINSMAALNG--GLGATGLTNGTAGTMDALTQAYSGIQQYAAAALPTLYSQSLLQ 388
+L + +A ++G GL GL+ G AG
Sbjct: 253 LSLIARFSPIA-IDGMSGLAGVGLSGGAAGA----------------------------- 282
Query: 389 QQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGF 448
G +F+Y+L E + + Q+F PFG V + KV D TN K FGF
Sbjct: 283 -------------GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGF 329
Query: 449 VSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSK 482
V+ N A AI ++NG+++G + L+V K SK
Sbjct: 330 VTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSK 363
Score = 56.2 bits (134), Expect = 6e-08
Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 379 PTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDK 438
P L + LL A K NL + +LPQ + +F G++ S K+ DK
Sbjct: 20 PALPNGPLLGTNGATDDSK-----TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDK 74
Query: 439 QTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDS 485
T S +GFV+Y +P A AI +NG ++ K +KV R + S
Sbjct: 75 ITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSAS 121
Score = 32.3 bits (72), Expect = 1.00
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 18 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
+FV + E L +LF P+GAV + V+RD + N + KG FVT A A
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTN--KCKGFGFVTMTNYDEAAMAIA 343
Query: 78 ALHNIK 83
+L+ +
Sbjct: 344 SLNGYR 349
>gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]
Length = 360
Score = 76.3 bits (186), Expect = 6e-14
Identities = 58/203 (28%), Positives = 96/203 (47%), Gaps = 14/203 (6%)
Query: 2 NGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGC 61
NGA D S + V +P++ ++ E K LF G + ++RD+ QS G
Sbjct: 31 NGATDDSKT------NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITG--QSLGY 82
Query: 62 CFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNE 121
FV + A +A N L+ +K +P+ S ++ D L++ + K ++
Sbjct: 83 GFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPS----SASIRDANLYVSGLPKTMSQ 138
Query: 122 NDIRVMFSPFGQIEECRILRGP-DGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSP 180
++ +FS +G+I RIL G+SRG F+ F R A+ AIK ++ + + G + P
Sbjct: 139 KEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEP 197
Query: 181 IVVKFADTQKDKEQRRLQQQLAQ 203
I VKFA+ K + L L Q
Sbjct: 198 ITVKFANNPSQKTGQALLTHLYQ 220
Score = 69.3 bits (168), Expect = 7e-12
Identities = 92/392 (23%), Positives = 156/392 (39%), Gaps = 77/392 (19%)
Query: 102 SNAVEDRK--LFIGMVSKKCNENDIRVMFSPFGQIEECRILRGP-DGLSRGCAFVTFSTR 158
+ A +D K L + + + +++ + +F G IE C+++R G S G FV +S
Sbjct: 31 NGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDP 90
Query: 159 AMAQNAIKAMH----QSQTME---GCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTA 211
A AI ++ Q++T++ S ++ A+ + + Q+ +M+QL
Sbjct: 91 NDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQK---EMEQL--- 144
Query: 212 TWGNLTGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQ-LQNLATLAAAAAAAQ 270
+ G + + + Q S +G +++ A++ L L AA
Sbjct: 145 ----FSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITV 200
Query: 271 TSATSTNANPLSTTSSALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGLAGATVGLNNI 330
A NP T AL + + S+ AG ++ T L L G+
Sbjct: 201 KFAN----NPSQKTGQAL---LTHLYQSSARRYAGP-LHHQTQRFRLDNLLNMAYGVKRF 252
Query: 331 NALAGTINSMAALNGGLGATGLTNGTAGTMDALTQAYSGIQQYAAAALPTLYSQSLLQQQ 390
+ +A I+ M+ GL GL+ G AG
Sbjct: 253 SPIA--IDGMS----GLAGVGLSGGAAGA------------------------------- 275
Query: 391 SAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVS 450
G +F+Y+L E + + Q+F PFG V + KV D TN K FGFV+
Sbjct: 276 -----------GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVT 324
Query: 451 YDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSK 482
N A AI ++NG+++G + L+V K SK
Sbjct: 325 MTNYDEAAMAIASLNGYRLGERVLQVSFKTSK 356
Score = 56.2 bits (134), Expect = 6e-08
Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 379 PTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDK 438
P L + LL A K NL + +LPQ + +F G++ S K+ DK
Sbjct: 20 PALPNGPLLGTNGATDDSK-----TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDK 74
Query: 439 QTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDS 485
T S +GFV+Y +P A AI +NG ++ K +KV R + S
Sbjct: 75 ITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSAS 121
Score = 32.3 bits (72), Expect = 1.00
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 18 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
+FV + E L +LF P+GAV + V+RD + N + KG FVT A A
Sbjct: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTN--KCKGFGFVTMTNYDEAAMAIA 336
Query: 78 ALHNIK 83
+L+ +
Sbjct: 337 SLNGYR 342
>gi|187960109 RNA binding motif protein 28 [Homo sapiens]
Length = 759
Score = 70.9 bits (172), Expect = 3e-12
Identities = 53/180 (29%), Positives = 79/180 (43%), Gaps = 28/180 (15%)
Query: 16 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
+ +FVG++P S ++L+ELF G V Q V+ ++ SK C + T +
Sbjct: 4 LTLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKG-----SKACRGFGYVTFSMLEDV 58
Query: 76 QNALHNIKTLPGMHHPIQM---------------------KPADSEKSNAVEDRK--LFI 112
Q AL I T G + + K K V D+K L I
Sbjct: 59 QRALKEITTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLII 118
Query: 113 GMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQ 172
+S KC+E+D++ +F+ FG + E I R PDG RG FV F A A+K M+ +
Sbjct: 119 RNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKE 178
Score = 38.5 bits (88), Expect = 0.014
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 102 SNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPD-GLSRGCAFVTFSTRAM 160
S+ E + +FI +S E ++ + FG+++ RI+ PD S+GCAF F T+
Sbjct: 329 SDVNEGKTVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEA 388
Query: 161 AQNAIKA 167
AQ + A
Sbjct: 389 AQKCLLA 395
Score = 37.7 bits (86), Expect = 0.024
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 110 LFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLS-RGCAFVTFSTRAMAQNAIKAM 168
LF+G + + +FS G +++C ++ + RG +VTFS M ++ +A+
Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFS---MLEDVQRAL 62
Query: 169 HQSQTMEGCSSPIVV---KFADTQKDK 192
+ T EGC + V K + K+K
Sbjct: 63 KEITTFEGCKINVTVAKKKLRNKTKEK 89
Score = 34.3 bits (77), Expect = 0.26
Identities = 20/85 (23%), Positives = 39/85 (45%)
Query: 402 GANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAI 461
G LF+ LP + + ++F G V V +K + + FG+V++ Q A+
Sbjct: 3 GLTLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRAL 62
Query: 462 QAMNGFQIGMKRLKVQLKRSKNDSK 486
+ + F+ + V K+ +N +K
Sbjct: 63 KEITTFEGCKINVTVAKKKLRNKTK 87
Score = 34.3 bits (77), Expect = 0.26
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 388 QQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFG 447
+++ A K + A L I +L + + D+ +F FG V+ + K + FG
Sbjct: 99 KKEPKAKKAKVADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNI-PRKPDGKMRGFG 157
Query: 448 FVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSK 486
FV + N + A A++ MN +I + + V +K+ K
Sbjct: 158 FVQFKNLLEAGKALKGMNMKEIKGRTVAVDWAVAKDKYK 196
Score = 31.6 bits (70), Expect = 1.7
Identities = 19/91 (20%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 401 EGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 460
EG +FI +L + ++++ ++ FG + ++ + T SK F + +AQ
Sbjct: 333 EGKTVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKC 392
Query: 461 IQAMN------GFQIGMKRLKVQLKRSKNDS 485
+ A + G ++ ++LKV L +++++
Sbjct: 393 LLAASPENEAGGLKLDGRQLKVDLAVTRDEA 423
Score = 31.6 bits (70), Expect = 1.7
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 18 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA 72
+F+ + E+EL EL + +G + + ++ + SKGC F F T++AA
Sbjct: 337 VFIRNLSFDSEEEELGELLQQFGELKYVRIVLH--PDTEHSKGCAFAQFMTQEAA 389
>gi|93277070 RNA binding motif protein 45 [Homo sapiens]
Length = 474
Score = 68.6 bits (166), Expect = 1e-11
Identities = 58/209 (27%), Positives = 90/209 (43%), Gaps = 21/209 (10%)
Query: 5 LDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFV 64
+D D+P I + + + E L+E F P+G + I V+RD+ + +SKG FV
Sbjct: 17 VDSLDEPPNSRIFLVISKYT---PESVLRERFSPFGDIQDIWVVRDK--HTKESKGIAFV 71
Query: 65 TFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNA---VEDRKL--FIGMVSKKC 119
F A A +H P PI++ A S S + VED +L M+ K
Sbjct: 72 KFARSSQACRAMEEMHGQCLGPNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFVMIPKSY 131
Query: 120 NENDIRVMFSPFGQIEECRILRGP-DGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCS 178
E D+R F +G IE C I++ G S+G +V + +K +Q +E C
Sbjct: 132 TEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRY---------LKPSQAAQAIENCD 182
Query: 179 SPIVVKFADTQKDKEQRRLQQQLAQQMQQ 207
A+ K+K +Q M+Q
Sbjct: 183 RSFRAILAE-PKNKASESSEQDYYSNMRQ 210
Score = 34.3 bits (77), Expect = 0.26
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 401 EGANLFIYHLPQEFGDQDIL-QMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQA 459
E N I+ + ++ + +L + F PFG++ V DK T SK FV + A
Sbjct: 22 EPPNSRIFLVISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACR 81
Query: 460 AIQAMNGFQIG---MKRLKVQLKRSKN 483
A++ M+G +G K +KV + +S++
Sbjct: 82 AMEEMHGQCLGPNDTKPIKVFIAQSRS 108
Score = 32.7 bits (73), Expect = 0.76
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 398 EGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSA 457
E P LFI P + +F FGN+I + K G+ Y + +SA
Sbjct: 385 ETPVKERLFIVFNPHPLPLDVLEDIFCRFGNLIEVYLVSGKNV------GYAKYADRISA 438
Query: 458 QAAIQAMNGFQIGMKRLKVQLKRSKND 484
AI ++G + RLKV L S +
Sbjct: 439 NDAIATLHGKILNGVRLKVMLADSPRE 465
>gi|51317353 RNA binding motif, single stranded interacting protein
3 isoform 3 [Homo sapiens]
Length = 419
Score = 68.2 bits (165), Expect = 2e-11
Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 364 TQAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMF 423
T++Y+ A P+ S S +++G Q NL+I LP DQD++++
Sbjct: 24 TKSYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSK---TNLYIRGLPPGTTDQDLIKLC 80
Query: 424 MPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM--NGFQIGMKRLKVQ 477
P+G ++S K +DK TN K +GFV +D+P +AQ A+ ++ NG Q M + + Q
Sbjct: 81 QPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQ 136
Score = 65.5 bits (158), Expect = 1e-10
Identities = 68/300 (22%), Positives = 125/300 (41%), Gaps = 35/300 (11%)
Query: 2 NGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGC 61
N + ++S +++ +P ++++L +L +PYG + + D++ N Q KG
Sbjct: 46 NNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTN--QCKGY 103
Query: 62 CFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNE 121
FV F + AA Q A+ ++K + +Q + A ++ + L+I + +E
Sbjct: 104 GFVDFDSPAAA---QKAVASLKA-----NGVQAQMAKQQEQDPTN---LYISNLPISMDE 152
Query: 122 NDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAI-----KAMHQSQTMEG 176
++ M PFG + RILR +G+SRG F + + I K + +
Sbjct: 153 QELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPA 212
Query: 177 CSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSS 236
S P++ KFAD + K Q Q N W G +AL T++
Sbjct: 213 PSEPLLCKFADGGQKKRQN-------QSKYTQNGRPWPREGEAG------MALTYDPTAA 259
Query: 237 SNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSA---TSTNANPLS-TTSSALGALT 292
G +S +A + ++ AA+ + T T +P+S ++ +G LT
Sbjct: 260 IQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQGAVITPTMDHPMSMQPANMMGPLT 319
Score = 43.9 bits (102), Expect = 3e-04
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 389 QQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGF 448
Q A Q++ P NL+I +LP +Q++ M PFG+VIS ++ D +S+ GF
Sbjct: 127 QAQMAKQQEQDP--TNLYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGF 183
Query: 449 VSYDNPVSAQAAIQAMNG 466
++ + IQ NG
Sbjct: 184 ARMESTEKCEVVIQHFNG 201
>gi|51317355 RNA binding motif, single stranded interacting protein
3 isoform 1 [Homo sapiens]
Length = 437
Score = 67.8 bits (164), Expect = 2e-11
Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 5/115 (4%)
Query: 365 QAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFM 424
Q+Y+ A P+ S S +++G Q NL+I LP DQD++++
Sbjct: 26 QSYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSK---TNLYIRGLPPGTTDQDLIKLCQ 82
Query: 425 PFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM--NGFQIGMKRLKVQ 477
P+G ++S K +DK TN K +GFV +D+P +AQ A+ ++ NG Q M + + Q
Sbjct: 83 PYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQ 137
Score = 67.0 bits (162), Expect = 4e-11
Identities = 74/327 (22%), Positives = 130/327 (39%), Gaps = 38/327 (11%)
Query: 2 NGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGC 61
N + ++S +++ +P ++++L +L +PYG + + D++ N Q KG
Sbjct: 47 NNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTN--QCKGY 104
Query: 62 CFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNE 121
FV F + AA Q A+ ++K + +Q + A ++ + L+I + +E
Sbjct: 105 GFVDFDSPAAA---QKAVASLKA-----NGVQAQMAKQQEQDPTN---LYISNLPISMDE 153
Query: 122 NDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAI-----KAMHQSQTMEG 176
++ M PFG + RILR +G+SRG F + + I K + +
Sbjct: 154 QELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPA 213
Query: 177 CSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSS 236
S P++ KFAD + K Q Q N W G +AL T++
Sbjct: 214 PSEPLLCKFADGGQKKRQN-------QSKYTQNGRPWPREGEAG------MALTYDPTAA 260
Query: 237 SNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLST-TSSALGALTSPV 295
G +S +A + ++ AA+ + ST+ P GA+ +P
Sbjct: 261 IQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQVQSTSWMPHPPYVMQPTGAVITPT 320
Query: 296 AASTPNSTAGAAMNSLT------SLGT 316
+ M LT SLGT
Sbjct: 321 MDHPMSMQPANMMGPLTQQMNHLSLGT 347
Score = 43.9 bits (102), Expect = 3e-04
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 389 QQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGF 448
Q A Q++ P NL+I +LP +Q++ M PFG+VIS ++ D +S+ GF
Sbjct: 128 QAQMAKQQEQDP--TNLYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGF 184
Query: 449 VSYDNPVSAQAAIQAMNG 466
++ + IQ NG
Sbjct: 185 ARMESTEKCEVVIQHFNG 202
>gi|51317351 RNA binding motif, single stranded interacting protein
3 isoform 2 [Homo sapiens]
Length = 420
Score = 67.8 bits (164), Expect = 2e-11
Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 5/115 (4%)
Query: 365 QAYSGIQQYAAAALPTLYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFM 424
Q+Y+ A P+ S S +++G Q NL+I LP DQD++++
Sbjct: 26 QSYAPAPHPMAPPSPSTNSSSNNSSNNSSGEQLSK---TNLYIRGLPPGTTDQDLIKLCQ 82
Query: 425 PFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM--NGFQIGMKRLKVQ 477
P+G ++S K +DK TN K +GFV +D+P +AQ A+ ++ NG Q M + + Q
Sbjct: 83 PYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQ 137
Score = 67.0 bits (162), Expect = 4e-11
Identities = 74/327 (22%), Positives = 130/327 (39%), Gaps = 38/327 (11%)
Query: 2 NGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGC 61
N + ++S +++ +P ++++L +L +PYG + + D++ N Q KG
Sbjct: 47 NNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTN--QCKGY 104
Query: 62 CFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNE 121
FV F + AA Q A+ ++K + +Q + A ++ + L+I + +E
Sbjct: 105 GFVDFDSPAAA---QKAVASLKA-----NGVQAQMAKQQEQDPTN---LYISNLPISMDE 153
Query: 122 NDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAI-----KAMHQSQTMEG 176
++ M PFG + RILR +G+SRG F + + I K + +
Sbjct: 154 QELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPA 213
Query: 177 CSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYLALLQQATSS 236
S P++ KFAD + K Q Q N W G +AL T++
Sbjct: 214 PSEPLLCKFADGGQKKRQN-------QSKYTQNGRPWPREGEAG------MALTYDPTAA 260
Query: 237 SNLGAFSGIQQMAGMNALQLQNLATLAAAAAAAQTSATSTNANPLST-TSSALGALTSPV 295
G +S +A + ++ AA+ + ST+ P GA+ +P
Sbjct: 261 IQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQVQSTSWMPHPPYVMQPTGAVITPT 320
Query: 296 AASTPNSTAGAAMNSLT------SLGT 316
+ M LT SLGT
Sbjct: 321 MDHPMSMQPANMMGPLTQQMNHLSLGT 347
Score = 43.9 bits (102), Expect = 3e-04
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 389 QQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGF 448
Q A Q++ P NL+I +LP +Q++ M PFG+VIS ++ D +S+ GF
Sbjct: 128 QAQMAKQQEQDP--TNLYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGF 184
Query: 449 VSYDNPVSAQAAIQAMNG 466
++ + IQ NG
Sbjct: 185 ARMESTEKCEVVIQHFNG 202
>gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens]
Length = 375
Score = 67.4 bits (163), Expect = 3e-11
Identities = 56/218 (25%), Positives = 96/218 (44%), Gaps = 15/218 (6%)
Query: 18 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
++VG + R +E + +LF G ++ + + N P CFV FY + A A
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPY----CFVEFYEHRDAAAALA 66
Query: 78 ALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEEC 137
A++ K L S+K + +F+G +S + DI+ F+PFG+I +
Sbjct: 67 AMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDA 126
Query: 138 RILRG-PDGLSRGCAFVTFSTRAMAQNAIKAM-------HQSQTMEGCSSPIVVKFADTQ 189
R+++ G S+G FV+F + A+NAI M Q +T P K + +
Sbjct: 127 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPK-STQE 185
Query: 190 KDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYL 227
+ +Q R + + Q + T G + GLT Q +
Sbjct: 186 NNTKQLRFEDVVNQSSPKNCTVYCGGIA--SGLTDQLM 221
Score = 61.2 bits (147), Expect = 2e-09
Identities = 58/230 (25%), Positives = 106/230 (46%), Gaps = 43/230 (18%)
Query: 18 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
+FVG + + +++K F P+G + V++D + +SKG FV+FY + L+A+N
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATG--KSKGYGFVSFYNK---LDAEN 153
Query: 78 AL----------HNIKTLPGMHHPI-----------QMKPADSEKSNAVEDRKLFIGMVS 116
A+ I+T P Q++ D ++ ++ ++ G ++
Sbjct: 154 AIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIA 213
Query: 117 KKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEG 176
+ +R FSPFGQI E R+ +G +FV FST A +AI +++ T+EG
Sbjct: 214 SGLTDQLMRQTFSPFGQIMEIRVFP-----EKGYSFVRFSTHESAAHAIVSVN-GTTIEG 267
Query: 177 CSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQY 226
VVK ++ + + + QQ++ + WG + + G QY
Sbjct: 268 ----HVVKCYWGKESPD-------MTKNFQQVDYSQWGQWSQVYGNPQQY 306
Score = 54.7 bits (130), Expect = 2e-07
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 7/109 (6%)
Query: 374 AAAALPTLYSQSLLQQQ-------SAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPF 426
AAAAL + + +L ++ + + +K+ ++F+ L E +DI F PF
Sbjct: 61 AAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPF 120
Query: 427 GNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLK 475
G + A+V D T SK +GFVS+ N + A+ AI M G +G ++++
Sbjct: 121 GKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 169
Score = 35.8 bits (81), Expect = 0.090
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 405 LFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQAM 464
L++ +L ++ + ILQ+F G S K+ + +N C FV + A AA+ AM
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYC--FVEFYEHRDAAAALAAM 68
Query: 465 NGFQIGMKRLKVQLKRSKNDSK 486
NG +I K +KV + + K
Sbjct: 69 NGRKILGKEVKVNWATTPSSQK 90
Score = 33.5 bits (75), Expect = 0.45
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 397 KEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVS 456
+ P+ ++ + DQ + Q F PFG ++ +VF +K + FV + S
Sbjct: 199 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG------YSFVRFSTHES 252
Query: 457 AQAAIQAMNGFQI 469
A AI ++NG I
Sbjct: 253 AAHAIVSVNGTTI 265
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.127 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,250,471
Number of Sequences: 37866
Number of extensions: 650946
Number of successful extensions: 5571
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 210
Number of HSP's that attempted gapping in prelim test: 3686
Number of HSP's gapped (non-prelim): 1540
length of query: 488
length of database: 18,247,518
effective HSP length: 106
effective length of query: 382
effective length of database: 14,233,722
effective search space: 5437281804
effective search space used: 5437281804
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.