Guide to the Human Genome
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Name: ZSCAN2 Sequence: fasta or formatted (146aa) NCBI GI: 55769572
Description:

zinc finger protein 29 isoform 3

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt prot [150aa] zinc finger protein 29 isoform 2
alt prot [614aa] zinc finger protein 29 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         10           3
 C cysteine            2.1          3           1
 D aspartate           4.8          7           2
 E glutamate          15.1         22           3
 F phenylalanine       0.7          1           1
 G glycine             5.5          8           2
 H histidine           2.1          3           1
 I isoleucine          2.1          3           1
 K lysine              2.1          3           1
 L leucine             9.6         14           1
 M methionine          3.4          5           2
 N asparagine          0.0          0           0
 P proline             8.2         12           1
 Q glutamine           8.9         13           1
 R arginine            6.2          9           2
 S serine              6.2          9           2
 T threonine           6.8         10           2
 V valine              7.5         11           1
 W tryptophan          2.1          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 29 isoform 3 
ZSCAN2                0.912   zinc finger protein 29 isoform 2 
ZSCAN2                0.908   zinc finger protein 29 isoform 1 
ZKSCAN1               0.264   zinc finger protein 36 
ZNF323                0.253   zinc finger protein 323 
ZNF323                0.253   zinc finger protein 323 
ZNF323                0.253   zinc finger protein 323 
ZNF323                0.253   zinc finger protein 323 
ZNF397OS              0.245   zinc finger protein 397 opposite strand 
SCAND3                0.242   SCAN domain containing 3 
ZNF24                 0.227   zinc finger protein 24 
ZNF397                0.227   zinc finger protein 397 isoform 1 
ZNF397                0.227   zinc finger protein 397 isoform 2 
ZNF202                0.227   zinc finger protein 202 
ZNF213                0.223   zinc finger protein 213 
ZNF213                0.223   zinc finger protein 213 
ZNF483                0.223   zinc finger protein 483 isoform b 
ZNF483                0.223   zinc finger protein 483 isoform a 
ZNF498                0.223   zinc finger and SCAN domain containing 25 
ZSCAN12               0.223   zinc finger and SCAN domain containing 12 
ZSCAN21               0.220   zinc finger protein 38 
ZKSCAN5               0.216   zinc finger with KRAB and SCAN domains 5 
ZKSCAN5               0.216   zinc finger with KRAB and SCAN domains 5 
ZNF167                0.216   zinc finger protein 167 isoform 1 
ZNF167                0.216   zinc finger protein 167 isoform 2 
ZNF193                0.216   zinc finger protein 193 
ZSCAN23               0.212   zinc finger protein 390 
ZNF287                0.209   zinc finger protein 287 
ZNF394                0.209   zinc finger protein 394 
MZF1                  0.205   zinc finger protein 42 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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