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Search of human proteins with 55743140
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|55743140 WW domain binding protein 5 [Homo sapiens]
(104 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|55743140 WW domain binding protein 5 [Homo sapiens] 218 1e-57
gi|55743147 WW domain binding protein 5 [Homo sapiens] 218 1e-57
gi|10047100 WW domain binding protein 5 [Homo sapiens] 218 1e-57
gi|55743145 WW domain binding protein 5 [Homo sapiens] 218 1e-57
gi|55749424 transcription elongation factor A (SII)-like 1 [Homo... 81 2e-16
gi|55749406 transcription elongation factor A (SII)-like 1 [Homo... 81 2e-16
gi|55749397 transcription elongation factor A (SII)-like 1 [Homo... 81 2e-16
gi|55749466 transcription elongation factor A (SII)-like 8 [Homo... 77 4e-15
gi|23503247 transcription elongation factor A (SII)-like 8 [Homo... 77 4e-15
gi|23397409 transcription elongation factor A (SII)-like 7 [Homo... 69 6e-13
gi|55749459 transcription elongation factor A (SII)-like 4 [Homo... 63 4e-11
gi|55749442 transcription elongation factor A (SII)-like 4 [Homo... 63 4e-11
gi|65505873 transcription elongation factor A (SII)-like 4 [Homo... 63 4e-11
gi|55749451 transcription elongation factor A (SII)-like 4 [Homo... 63 4e-11
gi|17933774 transcription elongation factor A (SII)-like 2 [Homo... 62 1e-10
gi|118600971 transcription elongation factor A (SII)-like 6 [Hom... 49 6e-07
gi|61175239 transcription elongation factor A (SII)-like 5 [Homo... 49 8e-07
gi|55749431 transcription elongation factor A (SII)-like 3 [Homo... 47 2e-06
gi|14249718 transcription elongation factor A (SII)-like 3 [Homo... 47 2e-06
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 43 6e-05
gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens] 42 1e-04
gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens] 42 1e-04
gi|169210053 PREDICTED: hypothetical protein [Homo sapiens] 40 3e-04
gi|239508778 PREDICTED: hypothetical protein, partial [Homo sapi... 38 0.001
gi|208431781 cyclic nucleotide gated channel beta 1 isoform b [H... 37 0.003
gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [H... 37 0.003
gi|239745259 PREDICTED: hypothetical protein isoform 2 [Homo sap... 37 0.003
gi|169208122 PREDICTED: hypothetical protein isoform 1 [Homo sap... 37 0.003
gi|17975763 myelin transcription factor 1 [Homo sapiens] 37 0.003
gi|118498345 AT-binding transcription factor 1 [Homo sapiens] 37 0.003
>gi|55743140 WW domain binding protein 5 [Homo sapiens]
Length = 104
Score = 218 bits (554), Expect = 1e-57
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDI 60
MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDI
Sbjct: 1 MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDI 60
Query: 61 HNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPYLM 104
HNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPYLM
Sbjct: 61 HNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPYLM 104
>gi|55743147 WW domain binding protein 5 [Homo sapiens]
Length = 104
Score = 218 bits (554), Expect = 1e-57
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDI 60
MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDI
Sbjct: 1 MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDI 60
Query: 61 HNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPYLM 104
HNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPYLM
Sbjct: 61 HNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPYLM 104
>gi|10047100 WW domain binding protein 5 [Homo sapiens]
Length = 104
Score = 218 bits (554), Expect = 1e-57
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDI 60
MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDI
Sbjct: 1 MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDI 60
Query: 61 HNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPYLM 104
HNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPYLM
Sbjct: 61 HNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPYLM 104
>gi|55743145 WW domain binding protein 5 [Homo sapiens]
Length = 104
Score = 218 bits (554), Expect = 1e-57
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDI 60
MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDI
Sbjct: 1 MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDI 60
Query: 61 HNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPYLM 104
HNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPYLM
Sbjct: 61 HNRHLSNEDMFREVDEIDEIRRVRNKLIVMRWKVNRNHPYPYLM 104
>gi|55749424 transcription elongation factor A (SII)-like 1 [Homo
sapiens]
Length = 159
Score = 81.3 bits (199), Expect = 2e-16
Identities = 40/84 (47%), Positives = 57/84 (67%), Gaps = 7/84 (8%)
Query: 20 EEEPKPEEKP--EEEEKLEEEAKAKGTFRERLIQSLQEFKEDIHNRHLSNEDMFREVDEI 77
E P E+ P + KLEE G+F+ERL +S +F+ DIH R+LSNE+M + DE+
Sbjct: 80 EGRPPMEQPPCGVGKHKLEE-----GSFKERLARSRPQFRGDIHGRNLSNEEMIQAADEL 134
Query: 78 DEIRRVRNKLIVMRWKVNRNHPYP 101
+E++RVRNKL++M WK R+ PYP
Sbjct: 135 EEMKRVRNKLMIMHWKAKRSRPYP 158
>gi|55749406 transcription elongation factor A (SII)-like 1 [Homo
sapiens]
Length = 159
Score = 81.3 bits (199), Expect = 2e-16
Identities = 40/84 (47%), Positives = 57/84 (67%), Gaps = 7/84 (8%)
Query: 20 EEEPKPEEKP--EEEEKLEEEAKAKGTFRERLIQSLQEFKEDIHNRHLSNEDMFREVDEI 77
E P E+ P + KLEE G+F+ERL +S +F+ DIH R+LSNE+M + DE+
Sbjct: 80 EGRPPMEQPPCGVGKHKLEE-----GSFKERLARSRPQFRGDIHGRNLSNEEMIQAADEL 134
Query: 78 DEIRRVRNKLIVMRWKVNRNHPYP 101
+E++RVRNKL++M WK R+ PYP
Sbjct: 135 EEMKRVRNKLMIMHWKAKRSRPYP 158
>gi|55749397 transcription elongation factor A (SII)-like 1 [Homo
sapiens]
Length = 159
Score = 81.3 bits (199), Expect = 2e-16
Identities = 40/84 (47%), Positives = 57/84 (67%), Gaps = 7/84 (8%)
Query: 20 EEEPKPEEKP--EEEEKLEEEAKAKGTFRERLIQSLQEFKEDIHNRHLSNEDMFREVDEI 77
E P E+ P + KLEE G+F+ERL +S +F+ DIH R+LSNE+M + DE+
Sbjct: 80 EGRPPMEQPPCGVGKHKLEE-----GSFKERLARSRPQFRGDIHGRNLSNEEMIQAADEL 134
Query: 78 DEIRRVRNKLIVMRWKVNRNHPYP 101
+E++RVRNKL++M WK R+ PYP
Sbjct: 135 EEMKRVRNKLMIMHWKAKRSRPYP 158
>gi|55749466 transcription elongation factor A (SII)-like 8 [Homo
sapiens]
Length = 117
Score = 76.6 bits (187), Expect = 4e-15
Identities = 51/112 (45%), Positives = 67/112 (59%), Gaps = 14/112 (12%)
Query: 2 KSCQKMEGKPENESEPKHEEEPKPEEKPEEEE---KLEEEA---KAKGTFRERLIQSLQE 55
KSC++ EGKP+N PK EE+ E+ P+E E + EE +A+G R Q Q
Sbjct: 3 KSCEENEGKPQNM--PKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQG 60
Query: 56 FKEDIHNRHLSNEDMFREVDEID----EIRRVRNKLIVMRWKV--NRNHPYP 101
FKED RHL E+M R VDE++ EIRRVRNK ++M WK +R+ PYP
Sbjct: 61 FKEDTPVRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWKQRHSRSRPYP 112
>gi|23503247 transcription elongation factor A (SII)-like 8 [Homo
sapiens]
Length = 117
Score = 76.6 bits (187), Expect = 4e-15
Identities = 51/112 (45%), Positives = 67/112 (59%), Gaps = 14/112 (12%)
Query: 2 KSCQKMEGKPENESEPKHEEEPKPEEKPEEEE---KLEEEA---KAKGTFRERLIQSLQE 55
KSC++ EGKP+N PK EE+ E+ P+E E + EE +A+G R Q Q
Sbjct: 3 KSCEENEGKPQNM--PKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQG 60
Query: 56 FKEDIHNRHLSNEDMFREVDEID----EIRRVRNKLIVMRWKV--NRNHPYP 101
FKED RHL E+M R VDE++ EIRRVRNK ++M WK +R+ PYP
Sbjct: 61 FKEDTPVRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWKQRHSRSRPYP 112
>gi|23397409 transcription elongation factor A (SII)-like 7 [Homo
sapiens]
Length = 100
Score = 69.3 bits (168), Expect = 6e-13
Identities = 41/106 (38%), Positives = 61/106 (57%), Gaps = 15/106 (14%)
Query: 2 KSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDIH 61
K C++ EGKP+ + E+ P E + ++ E G FR+RL+QSL+EFKEDI
Sbjct: 3 KPCKENEGKPKCSVPKREEKRPYGEFERQQTE---------GNFRQRLLQSLEEFKEDID 53
Query: 62 NRHLSNEDMFREVDE----IDEIRRVRNKLIVM--RWKVNRNHPYP 101
RH +E+M RE DE ++EIR +R K + + +R+ PYP
Sbjct: 54 YRHFKDEEMTREGDEMERCLEEIRGLRKKFRALHSNHRHSRDRPYP 99
>gi|55749459 transcription elongation factor A (SII)-like 4 [Homo
sapiens]
Length = 215
Score = 63.2 bits (152), Expect = 4e-11
Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 7/108 (6%)
Query: 1 MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEA--KAKGTFRERLIQSLQEFKE 58
M+ + EGKPE E +P+ E EP E + + E++ KAK + L L+E+KE
Sbjct: 84 MEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKAKRKTNKGLAHYLKEYKE 143
Query: 59 DIHNRHLSNEDMFREVDEI----DEIRRVRNKLIVMRWKVNRNHPYPY 102
IH+ + SNEDM RE D + DE R+ + KL W + RN P+
Sbjct: 144 AIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFLW-MQRNLQDPF 190
Score = 33.9 bits (76), Expect = 0.028
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
Query: 8 EGKPENESEPKHEEEPKPEEKPE-----EEEKLEEEAKAK 42
EG N+ + ++EE+P+ E KPE E++KLE E K +
Sbjct: 9 EGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTE 48
>gi|55749442 transcription elongation factor A (SII)-like 4 [Homo
sapiens]
Length = 215
Score = 63.2 bits (152), Expect = 4e-11
Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 7/108 (6%)
Query: 1 MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEA--KAKGTFRERLIQSLQEFKE 58
M+ + EGKPE E +P+ E EP E + + E++ KAK + L L+E+KE
Sbjct: 84 MEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKAKRKTNKGLAHYLKEYKE 143
Query: 59 DIHNRHLSNEDMFREVDEI----DEIRRVRNKLIVMRWKVNRNHPYPY 102
IH+ + SNEDM RE D + DE R+ + KL W + RN P+
Sbjct: 144 AIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFLW-MQRNLQDPF 190
Score = 33.9 bits (76), Expect = 0.028
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
Query: 8 EGKPENESEPKHEEEPKPEEKPE-----EEEKLEEEAKAK 42
EG N+ + ++EE+P+ E KPE E++KLE E K +
Sbjct: 9 EGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTE 48
>gi|65505873 transcription elongation factor A (SII)-like 4 [Homo
sapiens]
Length = 215
Score = 63.2 bits (152), Expect = 4e-11
Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 7/108 (6%)
Query: 1 MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEA--KAKGTFRERLIQSLQEFKE 58
M+ + EGKPE E +P+ E EP E + + E++ KAK + L L+E+KE
Sbjct: 84 MEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKAKRKTNKGLAHYLKEYKE 143
Query: 59 DIHNRHLSNEDMFREVDEI----DEIRRVRNKLIVMRWKVNRNHPYPY 102
IH+ + SNEDM RE D + DE R+ + KL W + RN P+
Sbjct: 144 AIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFLW-MQRNLQDPF 190
Score = 33.9 bits (76), Expect = 0.028
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
Query: 8 EGKPENESEPKHEEEPKPEEKPE-----EEEKLEEEAKAK 42
EG N+ + ++EE+P+ E KPE E++KLE E K +
Sbjct: 9 EGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTE 48
>gi|55749451 transcription elongation factor A (SII)-like 4 [Homo
sapiens]
Length = 215
Score = 63.2 bits (152), Expect = 4e-11
Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 7/108 (6%)
Query: 1 MKSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEA--KAKGTFRERLIQSLQEFKE 58
M+ + EGKPE E +P+ E EP E + + E++ KAK + L L+E+KE
Sbjct: 84 MEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKAKRKTNKGLAHYLKEYKE 143
Query: 59 DIHNRHLSNEDMFREVDEI----DEIRRVRNKLIVMRWKVNRNHPYPY 102
IH+ + SNEDM RE D + DE R+ + KL W + RN P+
Sbjct: 144 AIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFLW-MQRNLQDPF 190
Score = 33.9 bits (76), Expect = 0.028
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
Query: 8 EGKPENESEPKHEEEPKPEEKPE-----EEEKLEEEAKAK 42
EG N+ + ++EE+P+ E KPE E++KLE E K +
Sbjct: 9 EGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTE 48
>gi|17933774 transcription elongation factor A (SII)-like 2 [Homo
sapiens]
Length = 227
Score = 62.0 bits (149), Expect = 1e-10
Identities = 37/101 (36%), Positives = 58/101 (57%), Gaps = 7/101 (6%)
Query: 8 EGKPENESEPKHEEEPKPEEKPEEEEKLEEEA--KAKGTFRERLIQSLQEFKEDIHNRHL 65
EG+P++E EP+ E EP+ E + + E++ KAK + L Q L+++KE IH+ +
Sbjct: 103 EGEPDSEREPESEGEPESETRAAGKRPAEDDIPRKAKRKTNKGLAQYLKQYKEAIHDMNF 162
Query: 66 SNEDMFREVDEI----DEIRRVRNKLIVMRWKVNRNHPYPY 102
SNEDM RE D + D+ R+ + KL W + RN P+
Sbjct: 163 SNEDMIREFDNMARVEDKRRKSKQKLGAFLW-MQRNLQDPF 202
Score = 33.9 bits (76), Expect = 0.028
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 8 EGKPENESEPKHEEEPKPEEKPE-----EEEKLEEEAKAKGT 44
EG P N+ + +EE+P E KPE E++KLE E + T
Sbjct: 9 EGMPSNQGKIDNEEQPPHEGKPEVACILEDKKLENEGNTENT 50
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 5 QKMEGKPENESEPKHEEEP-KPEEKPEEEEKLEEEAKAK 42
+K+E + E+ K EEP K +EKPE K + E K++
Sbjct: 39 KKLENEGNTENTGKRVEEPLKDKEKPESAGKAKGEGKSE 77
>gi|118600971 transcription elongation factor A (SII)-like 6 [Homo
sapiens]
Length = 183
Score = 49.3 bits (116), Expect = 6e-07
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 11/102 (10%)
Query: 2 KSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEE--------AKAKGTFRERLIQSL 53
K Q+ +GK E E +P+ E +P + KPE + + E+ KAK S
Sbjct: 63 KGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKRKTDRGTDDSP 122
Query: 54 QEFKEDIHNRHLSNEDMFRE---VDEIDEIRRVRNKLIVMRW 92
++ +ED+ RHLS+E+M RE V E R + K+ W
Sbjct: 123 KDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHW 164
Score = 38.5 bits (88), Expect = 0.001
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 2 KSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAK 42
K K EG ENE +P+ E EP E K +EEEK + E K +
Sbjct: 3 KPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTE 43
Score = 38.5 bits (88), Expect = 0.001
Identities = 19/35 (54%), Positives = 22/35 (62%)
Query: 8 EGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAK 42
EGKPE+E EP E + EEKP+ E K E E K K
Sbjct: 15 EGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRK 49
>gi|61175239 transcription elongation factor A (SII)-like 5 [Homo
sapiens]
Length = 206
Score = 48.9 bits (115), Expect = 8e-07
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 11/99 (11%)
Query: 5 QKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEE--------AKAKGTFRERLIQSLQEF 56
Q+ +GK E E +P+ E +P + KPE + + E+ KAK S ++
Sbjct: 72 QEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKTDRGTDDSPKDS 131
Query: 57 KEDIHNRHLSNEDMFRE---VDEIDEIRRVRNKLIVMRW 92
+ED+ RHLS+E+M RE V E R + K+ W
Sbjct: 132 QEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHW 170
Score = 34.7 bits (78), Expect = 0.017
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 2 KSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAK 40
K ++ EGKPENE + E +P+ E E+E K +EE K
Sbjct: 3 KLYKENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEK 41
Score = 33.1 bits (74), Expect = 0.048
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 8 EGKPENESEPKHEEEPKPEEKPEEEEKLEEEAK 40
EGKPE+E + E + EEKP+ E K E E K
Sbjct: 21 EGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGK 53
Score = 31.6 bits (70), Expect = 0.14
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 12 ENESEPKHEEEPKPEEKPEEEEKLEEEAKA 41
ENE +P++E + E KPE+E E+E K+
Sbjct: 7 ENEGKPENERNLESEGKPEDEGSTEDEGKS 36
>gi|55749431 transcription elongation factor A (SII)-like 3 [Homo
sapiens]
Length = 200
Score = 47.4 bits (111), Expect = 2e-06
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 11/99 (11%)
Query: 5 QKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEA--------KAKGTFRERLIQSLQEF 56
Q+ +G+ E E +P+ E +P + KPE + + E+ KAK S ++
Sbjct: 66 QEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKTDRGTDDSPKDS 125
Query: 57 KEDIHNRHLSNEDMFRE---VDEIDEIRRVRNKLIVMRW 92
+ED+ RHLS+E+M RE V E R + K+ W
Sbjct: 126 QEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHW 164
Score = 38.1 bits (87), Expect = 0.001
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 2 KSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAK 42
K K EG ENE +P+ E EP E K +EEEK + E K +
Sbjct: 3 KPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGKTE 43
Score = 36.6 bits (83), Expect = 0.004
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 8 EGKPENESEPKHEEEPKPEEKPEEEEKLEEEAK 40
EGKPE+E EP E + EEKP+ E K E E K
Sbjct: 15 EGKPEDEVEPDDEGKSDEEEKPDVEGKTECEGK 47
>gi|14249718 transcription elongation factor A (SII)-like 3 [Homo
sapiens]
Length = 200
Score = 47.4 bits (111), Expect = 2e-06
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 11/99 (11%)
Query: 5 QKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEA--------KAKGTFRERLIQSLQEF 56
Q+ +G+ E E +P+ E +P + KPE + + E+ KAK S ++
Sbjct: 66 QEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKTDRGTDDSPKDS 125
Query: 57 KEDIHNRHLSNEDMFRE---VDEIDEIRRVRNKLIVMRW 92
+ED+ RHLS+E+M RE V E R + K+ W
Sbjct: 126 QEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHW 164
Score = 38.1 bits (87), Expect = 0.001
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 2 KSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAK 42
K K EG ENE +P+ E EP E K +EEEK + E K +
Sbjct: 3 KPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGKTE 43
Score = 36.6 bits (83), Expect = 0.004
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 8 EGKPENESEPKHEEEPKPEEKPEEEEKLEEEAK 40
EGKPE+E EP E + EEKP+ E K E E K
Sbjct: 15 EGKPEDEVEPDDEGKSDEEEKPDVEGKTECEGK 47
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 42.7 bits (99), Expect = 6e-05
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 5 QKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDIHNRH 64
++ E + E E E + EEE EE+ +EEE EEE + + F E + E +E+
Sbjct: 891 EEEEEEEEEEEEEEEEEEDFEEEEEDEEEYFEEEEEEEEEFEEEFEEEEGELEEEEEEED 950
Query: 65 LSNEDMFREVDEID 78
E+ EV++++
Sbjct: 951 EEEEEELEEVEDLE 964
Score = 42.4 bits (98), Expect = 8e-05
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 12 ENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDIHNRHLSNEDMF 71
+ E E + EEE + EE+ EEEE EEE + + + E + +EF+E+ E+
Sbjct: 887 DEEEEEEEEEEEEEEEEEEEEEDFEEEEEDEEEYFEEEEEEEEEFEEEFEEEEGELEEEE 946
Query: 72 REVDEIDE 79
E DE +E
Sbjct: 947 EEEDEEEE 954
>gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]
Length = 2454
Score = 41.6 bits (96), Expect = 1e-04
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 3 SCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDIHN 62
S + + E E E K EEE + EE+ EEEE +++K+ G R+++ + L++ K
Sbjct: 1396 SSSENKSNSEEEEEEKEEEEEEEEEEEEEEEDENDDSKSPGKGRKKIRKILKDDKLRTET 1455
Query: 63 RHLSNEDMFREVDEIDEIRRVRNKL 87
++ E+ R I E R R KL
Sbjct: 1456 QNALKEEEERR-KRIAEREREREKL 1479
Score = 35.0 bits (79), Expect = 0.013
Identities = 20/83 (24%), Positives = 39/83 (46%)
Query: 6 KMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDIHNRHL 65
K + E E + + EEE + EE+ EE+E + ++ KG + R I + + + N
Sbjct: 1401 KSNSEEEEEEKEEEEEEEEEEEEEEEDENDDSKSPGKGRKKIRKILKDDKLRTETQNALK 1460
Query: 66 SNEDMFREVDEIDEIRRVRNKLI 88
E+ + + E + R ++I
Sbjct: 1461 EEEERRKRIAEREREREKLREVI 1483
>gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]
Length = 2492
Score = 41.6 bits (96), Expect = 1e-04
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 3 SCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDIHN 62
S + + E E E K EEE + EE+ EEEE +++K+ G R+++ + L++ K
Sbjct: 1434 SSSENKSNSEEEEEEKEEEEEEEEEEEEEEEDENDDSKSPGKGRKKIRKILKDDKLRTET 1493
Query: 63 RHLSNEDMFREVDEIDEIRRVRNKL 87
++ E+ R I E R R KL
Sbjct: 1494 QNALKEEEERR-KRIAEREREREKL 1517
Score = 35.0 bits (79), Expect = 0.013
Identities = 20/83 (24%), Positives = 39/83 (46%)
Query: 6 KMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDIHNRHL 65
K + E E + + EEE + EE+ EE+E + ++ KG + R I + + + N
Sbjct: 1439 KSNSEEEEEEKEEEEEEEEEEEEEEEDENDDSKSPGKGRKKIRKILKDDKLRTETQNALK 1498
Query: 66 SNEDMFREVDEIDEIRRVRNKLI 88
E+ + + E + R ++I
Sbjct: 1499 EEEERRKRIAEREREREKLREVI 1521
>gi|169210053 PREDICTED: hypothetical protein [Homo sapiens]
Length = 185
Score = 40.4 bits (93), Expect = 3e-04
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 2 KSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDIH 61
+ C +G P E E + EEE EE+ EEE++ +EE + K +E E +E+
Sbjct: 108 EECSAQQGLPVEEEEVEEEEEEVEEEEKEEEKEEDEEEEEKEEEKEE-----DEEEEEKE 162
Query: 62 NRHLSNEDMFREVDEIDEIRRVR 84
+ + E + E+D EI+R +
Sbjct: 163 GKKMEEEKVEEEID--TEIQRTQ 183
>gi|239508778 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 123
Score = 38.1 bits (87), Expect = 0.001
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 2 KSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRER 48
K ++ E K + + + K EEE + EE+ EEEE+ EEE K +G R++
Sbjct: 53 KEKEEEEKKRKRKRKKKKEEEEREEEEEEEEEEKEEEEKEEGRRRKK 99
Score = 34.7 bits (78), Expect = 0.017
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 5 QKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRER 48
+K + K + E E + EEE + EE+ EEEEK E + K R R
Sbjct: 62 RKRKRKKKKEEEEREEEEEEEEEEKEEEEKEEGRRRKKKKKRRR 105
Score = 33.9 bits (76), Expect = 0.028
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 2 KSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDIH 61
K + E + E+E + E+E K +EK +E+ K E+E K K E+ + +E K+
Sbjct: 6 KKKETEETEETEETEEEEEKEGKRKEKRKEKRK-EKEKKKKTKETEKRKEKEEEEKKRKR 64
Query: 62 NRHLSNEDMFREVDEIDE 79
R E+ RE +E +E
Sbjct: 65 KRKKKKEEEEREEEEEEE 82
Score = 33.1 bits (74), Expect = 0.048
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 13/82 (15%)
Query: 5 QKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDIHNRH 64
++ E + E E + K +E K +EK EEE+K + + K K ER +E +E+
Sbjct: 32 KRKEKRKEKEKKKKTKETEKRKEKEEEEKKRKRKRKKKKEEEER-----EEEEEE----- 81
Query: 65 LSNEDMFREVDEIDEIRRVRNK 86
E+ +E +E +E RR + K
Sbjct: 82 ---EEEEKEEEEKEEGRRRKKK 100
Score = 30.4 bits (67), Expect = 0.31
Identities = 16/59 (27%), Positives = 33/59 (55%)
Query: 5 QKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDIHNR 63
+K + K + + E + EE + EE+ E+EE+ +EE + + ++R + +E K+ R
Sbjct: 60 KKRKRKRKKKKEEEEREEEEEEEEEEKEEEEKEEGRRRKKKKKRRRKEEEEEKKKKRRR 118
Score = 30.0 bits (66), Expect = 0.41
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 2 KSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDIH 61
K ++ E + E E E K + + ++K EEE + EEE + + + +E KE+
Sbjct: 44 KKTKETEKRKEKEEEEKKRKRKRKKKKEEEEREEEEEEEEE--------EKEEEEKEEGR 95
Query: 62 NRHLSNEDMFREVDEIDEIRRVR 84
R + +E +E + +R R
Sbjct: 96 RRKKKKKRRRKEEEEEKKKKRRR 118
Score = 25.8 bits (55), Expect = 7.7
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 14 ESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDIHNRHLSNEDMFRE 73
+ + K +E + EE E EE+ E+E K K + +E +++ + + E R+
Sbjct: 2 KKKKKKKETEETEETEETEEEEEKEGKRK--------EKRKEKRKEKEKKKKTKETEKRK 53
Query: 74 VDEIDEIRRVRNK 86
E +E +R R +
Sbjct: 54 EKEEEEKKRKRKR 66
Score = 25.8 bits (55), Expect = 7.7
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 5 QKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRER 48
++ E + E E E + +EE + +K ++ + EEE + K R +
Sbjct: 76 EEEEEEEEEEKEEEEKEEGRRRKKKKKRRRKEEEEEKKKKRRRK 119
>gi|208431781 cyclic nucleotide gated channel beta 1 isoform b [Homo
sapiens]
Length = 299
Score = 37.4 bits (85), Expect = 0.003
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 6 KMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLI----QSLQEFKEDIH 61
KM+ + E E EP+ E E +PE PEE E E + +F+E + S QE KE
Sbjct: 20 KMQEEEEVEPEPEMEAEVEPEPNPEEAETESESMPPEESFKEEEVAVADPSPQETKEAAL 79
Query: 62 NRHLSNEDMFREVDEIDEIRR 82
+S E+ E++ R
Sbjct: 80 TSTISLRAQGAEISEMNSPSR 100
>gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [Homo
sapiens]
Length = 1251
Score = 37.4 bits (85), Expect = 0.003
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 6 KMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLI----QSLQEFKEDIH 61
KM+ + E E EP+ E E +PE PEE E E + +F+E + S QE KE
Sbjct: 20 KMQEEEEVEPEPEMEAEVEPEPNPEEAETESESMPPEESFKEEEVAVADPSPQETKEAAL 79
Query: 62 NRHLSNEDMFREVDEIDEIRR 82
+S E+ E++ R
Sbjct: 80 TSTISLRAQGAEISEMNSPSR 100
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 7 MEGKPENESEPKHEEEPKPEEKPEEEEKLEEE 38
+E P S + E+E + EE+ EEEE+ EEE
Sbjct: 340 VEKMPRELSRIEEEKEDEEEEEEEEEEEEEEE 371
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 10 KPENESEPKHEEEPKPEEKPEEEEKLEEEAK 40
+P++ S+ K EE E K E EEK +EEA+
Sbjct: 396 RPQSTSDQKLWEEVGEEAKKEAEEKAKEEAE 426
Score = 27.7 bits (60), Expect = 2.0
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 2 KSCQKMEGKPENESEPKHEEEPKPEEKPEEEEK 34
K+ +KM + E K +EE + EE+ EEEE+
Sbjct: 338 KAVEKMPRELSRIEEEKEDEEEEEEEEEEEEEE 370
Score = 27.3 bits (59), Expect = 2.6
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 14 ESEPKHEEEPKPEEKPEEEEKLEE 37
E E + EEE + EE+ EEEE++ E
Sbjct: 351 EEEKEDEEEEEEEEEEEEEEEVTE 374
Score = 26.9 bits (58), Expect = 3.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 15 SEPKHEEEPKPEEKPEEEEKLEEE 38
S K EP P+ KP E E +EEE
Sbjct: 601 SPAKKAPEPAPDTKPAEAEPVEEE 624
Score = 25.8 bits (55), Expect = 7.7
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 5 QKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKG 43
+K + + E +E + E+EP+ + +EE + E EA + G
Sbjct: 419 EKAKEEAEEVAEEEAEKEPQDWAETKEEPEAEAEAASSG 457
>gi|239745259 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 432
Score = 37.0 bits (84), Expect = 0.003
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 11/91 (12%)
Query: 5 QKMEGKPENESEPKHEEEPK----PEEKPEEEEKLEEEAKAKGTFRERLIQSL-----QE 55
++ E + + E HE+E + E E+EE+L E+ K G +ERL++ + QE
Sbjct: 202 REQEERLREQEERLHEQEERLCEQEERLCEQEERLCEQEKLPG--QERLLEEVEKLLEQE 259
Query: 56 FKEDIHNRHLSNEDMFREVDEIDEIRRVRNK 86
+++ R L E + EV+E+ E R+R +
Sbjct: 260 RRQEEQERLLERERLLDEVEELLEQERLRQQ 290
Score = 32.7 bits (73), Expect = 0.063
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 4 CQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDIHNR 63
C++ E E E P E + EK E+E+ +EE + + RERL+ ++E E R
Sbjct: 230 CEQEERLCEQEKLPGQERLLEEVEKLLEQERRQEE-QERLLERERLLDEVEELLEQERLR 288
Query: 64 ----HLSNEDMFREVDEIDEIRRV 83
L ++ RE++ + E+ R+
Sbjct: 289 QQDERLWQQETLRELERLRELERM 312
>gi|169208122 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 479
Score = 37.0 bits (84), Expect = 0.003
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 11/91 (12%)
Query: 5 QKMEGKPENESEPKHEEEPK----PEEKPEEEEKLEEEAKAKGTFRERLIQSL-----QE 55
++ E + + E HE+E + E E+EE+L E+ K G +ERL++ + QE
Sbjct: 237 REQEERLREQEERLHEQEERLCEQEERLCEQEERLCEQEKLPG--QERLLEEVEKLLEQE 294
Query: 56 FKEDIHNRHLSNEDMFREVDEIDEIRRVRNK 86
+++ R L E + EV+E+ E R+R +
Sbjct: 295 RRQEEQERLLERERLLDEVEELLEQERLRQQ 325
Score = 34.7 bits (78), Expect = 0.017
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 4 CQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDIHNR 63
C++ E E E P E + EK E+E+ +EE + + RERL+ ++E E R
Sbjct: 265 CEQEERLCEQEKLPGQERLLEEVEKLLEQERRQEE-QERLLERERLLDEVEELLEQERLR 323
Query: 64 ----HLSNEDMFREVDEIDEIRRVR 84
L ++ RE++ + E+ R+R
Sbjct: 324 QQDERLWQQETLRELERLRELERLR 348
Score = 27.3 bits (59), Expect = 2.6
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 5 QKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDIHNRH 64
++ E + + E HE+E E E+EE+L E+ + ERL + + +E H
Sbjct: 195 RRQEERLREQEERLHEQE---ERLHEQEERLCEQEERLCEQEERLREQEERLREQEERLH 251
Query: 65 LSNEDMFREVDEIDE 79
E + + + + E
Sbjct: 252 EQEERLCEQEERLCE 266
>gi|17975763 myelin transcription factor 1 [Homo sapiens]
Length = 1121
Score = 37.0 bits (84), Expect = 0.003
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 8 EGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRE 47
E + E E E + EEE + EE+ EEEE+ EEEA F+E
Sbjct: 276 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEAAPDVIFQE 315
Score = 34.7 bits (78), Expect = 0.017
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 5 QKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKED 59
++ E + E E E + EEE + EE+ EEEE+ EEE + + E F+ED
Sbjct: 262 EEEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEAAPDVIFQED 316
Score = 34.3 bits (77), Expect = 0.022
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 8 EGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDI 60
E E E E + EEE + EE+ EEEE+ EEE + + E + +E D+
Sbjct: 259 EEDEEEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEAAPDV 311
Score = 33.5 bits (75), Expect = 0.037
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 6 KMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKED 59
K +G +E E + EEE + EE+ +EEE+ EEE + + E + +E +E+
Sbjct: 250 KQKGILSHEEEDEEEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 303
Score = 33.1 bits (74), Expect = 0.048
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 12 ENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKED 59
E E E + EEE + EE EEEE+ EEE + + E + +E +E+
Sbjct: 258 EEEDEEEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 305
Score = 32.0 bits (71), Expect = 0.11
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 3 SCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEE 38
S ++ + + E E E + E+E + EE+ EEEE+ EEE
Sbjct: 256 SHEEEDEEEEEEEEEEEEDEEEEEEEEEEEEEEEEE 291
Score = 32.0 bits (71), Expect = 0.11
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 12 ENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDIHNRHLSNED 69
E + E + EEE + E++ EEEE+ EEE + + E + +E +E+ + ED
Sbjct: 259 EEDEEEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEAAPDVIFQED 316
Score = 31.2 bits (69), Expect = 0.18
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 16 EPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQEFKEDIHNRHLSNEDMFRE 73
E + EEE + EE+ EE+E+ EEE + + E + +E +E+ + + +F+E
Sbjct: 258 EEEDEEEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEAAPDVIFQE 315
>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
Length = 3703
Score = 37.0 bits (84), Expect = 0.003
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 5 QKME-GKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAKGTFRERLIQSLQE 55
+K+E + E E E + EE + EE+ EEEE+ EE+ KG F L + L++
Sbjct: 454 EKVEPAEEEAEEEEEEEEAEEEEEEEEEEEEEEEDEGCKGLFPSELDEELED 505
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.130 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,003,421
Number of Sequences: 37866
Number of extensions: 256363
Number of successful extensions: 10577
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 366
Number of HSP's that attempted gapping in prelim test: 3777
Number of HSP's gapped (non-prelim): 4543
length of query: 104
length of database: 18,247,518
effective HSP length: 75
effective length of query: 29
effective length of database: 15,407,568
effective search space: 446819472
effective search space used: 446819472
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.