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Search of human proteins with 54792102
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|54792102 erbB-3 isoform s precursor [Homo sapiens]
(183 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|54792102 erbB-3 isoform s precursor [Homo sapiens] 365 e-101
gi|54792100 erbB-3 isoform 1 precursor [Homo sapiens] 279 1e-75
gi|110825958 v-erb-a erythroblastic leukemia viral oncogene homo... 135 3e-32
gi|4885215 v-erb-a erythroblastic leukemia viral oncogene homolo... 135 3e-32
gi|29725609 epidermal growth factor receptor isoform a precursor... 106 1e-23
gi|41327736 epidermal growth factor receptor isoform d precursor... 106 1e-23
gi|41327734 epidermal growth factor receptor isoform c precursor... 106 1e-23
gi|41327732 epidermal growth factor receptor isoform b precursor... 106 1e-23
gi|54792096 erbB-2 isoform a [Homo sapiens] 89 3e-18
gi|54792098 erbB-2 isoform b [Homo sapiens] 82 3e-16
gi|4557665 insulin-like growth factor 1 receptor precursor [Homo... 35 0.036
gi|119395738 insulin receptor isoform Short precursor [Homo sapi... 34 0.061
gi|119395736 insulin receptor isoform Long precursor [Homo sapiens] 34 0.061
gi|31657140 insulin receptor-related receptor precursor [Homo sa... 33 0.18
gi|39932581 hypothetical protein LOC55051 isoform 2 [Homo sapiens] 28 3.4
gi|39932583 hypothetical protein LOC55051 isoform 1 [Homo sapiens] 28 3.4
gi|21536378 ATP-binding cassette, sub-family B (MDR/TAP), member... 28 4.4
gi|56243583 WD repeat domain 18 [Homo sapiens] 28 4.4
gi|242332527 hypothetical protein LOC65250 [Homo sapiens] 28 5.7
gi|122937512 myosin VIIB [Homo sapiens] 27 7.5
gi|26051258 RAS guanyl releasing protein 4 isoform a [Homo sapiens] 27 9.8
gi|226246586 RAS guanyl releasing protein 4 isoform g [Homo sapi... 27 9.8
gi|226246584 RAS guanyl releasing protein 4 isoform f [Homo sapi... 27 9.8
gi|226246581 RAS guanyl releasing protein 4 isoform e [Homo sapi... 27 9.8
gi|226246579 RAS guanyl releasing protein 4 isoform d [Homo sapi... 27 9.8
gi|226246577 RAS guanyl releasing protein 4 isoform c [Homo sapi... 27 9.8
gi|226246575 RAS guanyl releasing protein 4 isoform b [Homo sapi... 27 9.8
gi|167466207 intercellular adhesion molecule 3 precursor [Homo s... 27 9.8
>gi|54792102 erbB-3 isoform s precursor [Homo sapiens]
Length = 183
Score = 365 bits (936), Expect = e-101
Identities = 183/183 (100%), Positives = 183/183 (100%)
Query: 1 MRANDALQVLGLLFSLARGSEVGNSQAVCPGTLNGLSVTGDAENQYQTLYKLYERCEVVM 60
MRANDALQVLGLLFSLARGSEVGNSQAVCPGTLNGLSVTGDAENQYQTLYKLYERCEVVM
Sbjct: 1 MRANDALQVLGLLFSLARGSEVGNSQAVCPGTLNGLSVTGDAENQYQTLYKLYERCEVVM 60
Query: 61 GNLEIVLTGHNADLSFLQWIREVTGYVLVAMNEFSTLPLPNLRVVRGTQVYDGKFAIFVM 120
GNLEIVLTGHNADLSFLQWIREVTGYVLVAMNEFSTLPLPNLRVVRGTQVYDGKFAIFVM
Sbjct: 61 GNLEIVLTGHNADLSFLQWIREVTGYVLVAMNEFSTLPLPNLRVVRGTQVYDGKFAIFVM 120
Query: 121 LNYNTNSSHALRQLRLTQLTGQFPMVPSGLTPQPAQDWYLLDDDPRLLTLSASSKVPVTL 180
LNYNTNSSHALRQLRLTQLTGQFPMVPSGLTPQPAQDWYLLDDDPRLLTLSASSKVPVTL
Sbjct: 121 LNYNTNSSHALRQLRLTQLTGQFPMVPSGLTPQPAQDWYLLDDDPRLLTLSASSKVPVTL 180
Query: 181 AAV 183
AAV
Sbjct: 181 AAV 183
>gi|54792100 erbB-3 isoform 1 precursor [Homo sapiens]
Length = 1342
Score = 279 bits (713), Expect = 1e-75
Identities = 140/140 (100%), Positives = 140/140 (100%)
Query: 1 MRANDALQVLGLLFSLARGSEVGNSQAVCPGTLNGLSVTGDAENQYQTLYKLYERCEVVM 60
MRANDALQVLGLLFSLARGSEVGNSQAVCPGTLNGLSVTGDAENQYQTLYKLYERCEVVM
Sbjct: 1 MRANDALQVLGLLFSLARGSEVGNSQAVCPGTLNGLSVTGDAENQYQTLYKLYERCEVVM 60
Query: 61 GNLEIVLTGHNADLSFLQWIREVTGYVLVAMNEFSTLPLPNLRVVRGTQVYDGKFAIFVM 120
GNLEIVLTGHNADLSFLQWIREVTGYVLVAMNEFSTLPLPNLRVVRGTQVYDGKFAIFVM
Sbjct: 61 GNLEIVLTGHNADLSFLQWIREVTGYVLVAMNEFSTLPLPNLRVVRGTQVYDGKFAIFVM 120
Query: 121 LNYNTNSSHALRQLRLTQLT 140
LNYNTNSSHALRQLRLTQLT
Sbjct: 121 LNYNTNSSHALRQLRLTQLT 140
Score = 44.7 bits (104), Expect = 5e-05
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 27/121 (22%)
Query: 28 VCPGTLNGLSVTGDAENQYQTLYKL----YERCEVVMGNLEIVLTGHNAD---------- 73
+CP G TG +++QT+ + C ++GNL+ ++TG N D
Sbjct: 326 LCPKACEG---TGSG-SRFQTVDSSNIDGFVNCTKILGNLDFLITGLNGDPWHKIPALDP 381
Query: 74 --LSFLQWIREVTGYVLVA-----MNEFSTLPLPNLRVVRGTQVYDGKFAIFVMLNYNTN 126
L+ + +RE+TGY+ + M+ FS NL + G +Y+ F++ +M N N
Sbjct: 382 EKLNVFRTVREITGYLNIQSWPPHMHNFSV--FSNLTTIGGRSLYNRGFSLLIMKNLNVT 439
Query: 127 S 127
S
Sbjct: 440 S 440
>gi|110825958 v-erb-a erythroblastic leukemia viral oncogene homolog
4 isoform JM-a/CVT-2 precursor [Homo sapiens]
Length = 1292
Score = 135 bits (339), Expect = 3e-32
Identities = 70/140 (50%), Positives = 92/140 (65%)
Query: 1 MRANDALQVLGLLFSLARGSEVGNSQAVCPGTLNGLSVTGDAENQYQTLYKLYERCEVVM 60
M+ L V L A + +SQ+VC GT N LS D E QY+ L K YE CEVVM
Sbjct: 1 MKPATGLWVWVSLLVAAGTVQPSDSQSVCAGTENKLSSLSDLEQQYRALRKYYENCEVVM 60
Query: 61 GNLEIVLTGHNADLSFLQWIREVTGYVLVAMNEFSTLPLPNLRVVRGTQVYDGKFAIFVM 120
GNLEI HN DLSFL+ +REVTGYVLVA+N+F LPL NLR++RGT++Y+ ++A+ +
Sbjct: 61 GNLEITSIEHNRDLSFLRSVREVTGYVLVALNQFRYLPLENLRIIRGTKLYEDRYALAIF 120
Query: 121 LNYNTNSSHALRQLRLTQLT 140
LNY + + L++L L LT
Sbjct: 121 LNYRKDGNFGLQELGLKNLT 140
>gi|4885215 v-erb-a erythroblastic leukemia viral oncogene homolog 4
isoform JM-a/CVT-1 precursor [Homo sapiens]
Length = 1308
Score = 135 bits (339), Expect = 3e-32
Identities = 70/140 (50%), Positives = 92/140 (65%)
Query: 1 MRANDALQVLGLLFSLARGSEVGNSQAVCPGTLNGLSVTGDAENQYQTLYKLYERCEVVM 60
M+ L V L A + +SQ+VC GT N LS D E QY+ L K YE CEVVM
Sbjct: 1 MKPATGLWVWVSLLVAAGTVQPSDSQSVCAGTENKLSSLSDLEQQYRALRKYYENCEVVM 60
Query: 61 GNLEIVLTGHNADLSFLQWIREVTGYVLVAMNEFSTLPLPNLRVVRGTQVYDGKFAIFVM 120
GNLEI HN DLSFL+ +REVTGYVLVA+N+F LPL NLR++RGT++Y+ ++A+ +
Sbjct: 61 GNLEITSIEHNRDLSFLRSVREVTGYVLVALNQFRYLPLENLRIIRGTKLYEDRYALAIF 120
Query: 121 LNYNTNSSHALRQLRLTQLT 140
LNY + + L++L L LT
Sbjct: 121 LNYRKDGNFGLQELGLKNLT 140
>gi|29725609 epidermal growth factor receptor isoform a precursor
[Homo sapiens]
Length = 1210
Score = 106 bits (265), Expect = 1e-23
Identities = 53/131 (40%), Positives = 81/131 (61%), Gaps = 1/131 (0%)
Query: 9 VLGLLFSLARGSEVGNSQAVCPGTLNGLSVTGDAENQYQTLYKLYERCEVVMGNLEIVLT 68
+L LL +L S + VC GT N L+ G E+ + +L +++ CEVV+GNLEI
Sbjct: 11 LLALLAALCPASRALEEKKVCQGTSNKLTQLGTFEDHFLSLQRMFNNCEVVLGNLEITYV 70
Query: 69 GHNADLSFLQWIREVTGYVLVAMNEFSTLPLPNLRVVRGTQVYDGKFAIFVMLNYNTNSS 128
N DLSFL+ I+EV GYVL+A+N +PL NL+++RG Y+ +A+ V+ NY+ N +
Sbjct: 71 QRNYDLSFLKTIQEVAGYVLIALNTVERIPLENLQIIRGNMYYENSYALAVLSNYDANKT 130
Query: 129 HALRQLRLTQL 139
L++L + L
Sbjct: 131 -GLKELPMRNL 140
>gi|41327736 epidermal growth factor receptor isoform d precursor
[Homo sapiens]
Length = 705
Score = 106 bits (265), Expect = 1e-23
Identities = 53/131 (40%), Positives = 81/131 (61%), Gaps = 1/131 (0%)
Query: 9 VLGLLFSLARGSEVGNSQAVCPGTLNGLSVTGDAENQYQTLYKLYERCEVVMGNLEIVLT 68
+L LL +L S + VC GT N L+ G E+ + +L +++ CEVV+GNLEI
Sbjct: 11 LLALLAALCPASRALEEKKVCQGTSNKLTQLGTFEDHFLSLQRMFNNCEVVLGNLEITYV 70
Query: 69 GHNADLSFLQWIREVTGYVLVAMNEFSTLPLPNLRVVRGTQVYDGKFAIFVMLNYNTNSS 128
N DLSFL+ I+EV GYVL+A+N +PL NL+++RG Y+ +A+ V+ NY+ N +
Sbjct: 71 QRNYDLSFLKTIQEVAGYVLIALNTVERIPLENLQIIRGNMYYENSYALAVLSNYDANKT 130
Query: 129 HALRQLRLTQL 139
L++L + L
Sbjct: 131 -GLKELPMRNL 140
>gi|41327734 epidermal growth factor receptor isoform c precursor
[Homo sapiens]
Length = 405
Score = 106 bits (265), Expect = 1e-23
Identities = 53/131 (40%), Positives = 81/131 (61%), Gaps = 1/131 (0%)
Query: 9 VLGLLFSLARGSEVGNSQAVCPGTLNGLSVTGDAENQYQTLYKLYERCEVVMGNLEIVLT 68
+L LL +L S + VC GT N L+ G E+ + +L +++ CEVV+GNLEI
Sbjct: 11 LLALLAALCPASRALEEKKVCQGTSNKLTQLGTFEDHFLSLQRMFNNCEVVLGNLEITYV 70
Query: 69 GHNADLSFLQWIREVTGYVLVAMNEFSTLPLPNLRVVRGTQVYDGKFAIFVMLNYNTNSS 128
N DLSFL+ I+EV GYVL+A+N +PL NL+++RG Y+ +A+ V+ NY+ N +
Sbjct: 71 QRNYDLSFLKTIQEVAGYVLIALNTVERIPLENLQIIRGNMYYENSYALAVLSNYDANKT 130
Query: 129 HALRQLRLTQL 139
L++L + L
Sbjct: 131 -GLKELPMRNL 140
>gi|41327732 epidermal growth factor receptor isoform b precursor
[Homo sapiens]
Length = 628
Score = 106 bits (265), Expect = 1e-23
Identities = 53/131 (40%), Positives = 81/131 (61%), Gaps = 1/131 (0%)
Query: 9 VLGLLFSLARGSEVGNSQAVCPGTLNGLSVTGDAENQYQTLYKLYERCEVVMGNLEIVLT 68
+L LL +L S + VC GT N L+ G E+ + +L +++ CEVV+GNLEI
Sbjct: 11 LLALLAALCPASRALEEKKVCQGTSNKLTQLGTFEDHFLSLQRMFNNCEVVLGNLEITYV 70
Query: 69 GHNADLSFLQWIREVTGYVLVAMNEFSTLPLPNLRVVRGTQVYDGKFAIFVMLNYNTNSS 128
N DLSFL+ I+EV GYVL+A+N +PL NL+++RG Y+ +A+ V+ NY+ N +
Sbjct: 71 QRNYDLSFLKTIQEVAGYVLIALNTVERIPLENLQIIRGNMYYENSYALAVLSNYDANKT 130
Query: 129 HALRQLRLTQL 139
L++L + L
Sbjct: 131 -GLKELPMRNL 140
>gi|54792096 erbB-2 isoform a [Homo sapiens]
Length = 1255
Score = 88.6 bits (218), Expect = 3e-18
Identities = 54/125 (43%), Positives = 71/125 (56%), Gaps = 9/125 (7%)
Query: 25 SQAVCPGTLNGLSVTGDAENQYQTLYKLYERCEVVMGNLEIVLTGHNADLSFLQWIREVT 84
S VC GT L + E L LY+ C+VV GNLE+ NA LSFLQ I+EV
Sbjct: 22 STQVCTGTDMKLRLPASPETHLDMLRHLYQGCQVVQGNLELTYLPTNASLSFLQDIQEVQ 81
Query: 85 GYVLVAMNEFSTLPLPNLRVVRGTQVYDGKFAIFVM-----LNYNT----NSSHALRQLR 135
GYVL+A N+ +PL LR+VRGTQ+++ +A+ V+ LN T S LR+L+
Sbjct: 82 GYVLIAHNQVRQVPLQRLRIVRGTQLFEDNYALAVLDNGDPLNNTTPVTGASPGGLRELQ 141
Query: 136 LTQLT 140
L LT
Sbjct: 142 LRSLT 146
>gi|54792098 erbB-2 isoform b [Homo sapiens]
Length = 1225
Score = 82.0 bits (201), Expect = 3e-16
Identities = 49/114 (42%), Positives = 66/114 (57%), Gaps = 9/114 (7%)
Query: 36 LSVTGDAENQYQTLYKLYERCEVVMGNLEIVLTGHNADLSFLQWIREVTGYVLVAMNEFS 95
L + E L LY+ C+VV GNLE+ NA LSFLQ I+EV GYVL+A N+
Sbjct: 3 LRLPASPETHLDMLRHLYQGCQVVQGNLELTYLPTNASLSFLQDIQEVQGYVLIAHNQVR 62
Query: 96 TLPLPNLRVVRGTQVYDGKFAIFVM-----LNYNT----NSSHALRQLRLTQLT 140
+PL LR+VRGTQ+++ +A+ V+ LN T S LR+L+L LT
Sbjct: 63 QVPLQRLRIVRGTQLFEDNYALAVLDNGDPLNNTTPVTGASPGGLRELQLRSLT 116
>gi|4557665 insulin-like growth factor 1 receptor precursor [Homo
sapiens]
Length = 1367
Score = 35.0 bits (79), Expect = 0.036
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 48 TLYKLYERCEVVMGNLEI-VLTGHN--ADL-SFLQWIREVTGYVLVAMNE--FSTLPLPN 101
T ++ + C + GNL I + G+N ++L +F+ I VTGYV + + S L N
Sbjct: 345 TSAQMLQGCTIFKGNLLINIRRGNNIASELENFMGLIEVVTGYVKIRHSHALVSLSFLKN 404
Query: 102 LRVVRGTQVYDGKFAIFVMLNYN 124
LR++ G + +G ++ +V+ N N
Sbjct: 405 LRLILGEEQLEGNYSFYVLDNQN 427
>gi|119395738 insulin receptor isoform Short precursor [Homo
sapiens]
Length = 1370
Score = 34.3 bits (77), Expect = 0.061
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 20/93 (21%)
Query: 28 VCPGTLNGLSVTGDAENQYQTLYKLYERCEVVMGNLEIVLTGHN-----ADLSFLQWIRE 82
VCPG D N L++L E C V+ G+L+I+L DLSF + I
Sbjct: 34 VCPGM--------DIRNNLTRLHEL-ENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIM- 83
Query: 83 VTGYVLV----AMNEFSTLPLPNLRVVRGTQVY 111
+T Y+L+ + L PNL V+RG++++
Sbjct: 84 ITDYLLLFRVYGLESLKDL-FPNLTVIRGSRLF 115
>gi|119395736 insulin receptor isoform Long precursor [Homo sapiens]
Length = 1382
Score = 34.3 bits (77), Expect = 0.061
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 20/93 (21%)
Query: 28 VCPGTLNGLSVTGDAENQYQTLYKLYERCEVVMGNLEIVLTGHN-----ADLSFLQWIRE 82
VCPG D N L++L E C V+ G+L+I+L DLSF + I
Sbjct: 34 VCPGM--------DIRNNLTRLHEL-ENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIM- 83
Query: 83 VTGYVLV----AMNEFSTLPLPNLRVVRGTQVY 111
+T Y+L+ + L PNL V+RG++++
Sbjct: 84 ITDYLLLFRVYGLESLKDL-FPNLTVIRGSRLF 115
>gi|31657140 insulin receptor-related receptor precursor [Homo
sapiens]
Length = 1297
Score = 32.7 bits (73), Expect = 0.18
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 9/68 (13%)
Query: 54 ERCEVVMGNLEIVL--TGHNADLSFLQWIR--EVTGYVLV----AMNEFSTLPLPNLRVV 105
E C VV G+L+I+L T D L + R +VT Y+L+ + L PNL V+
Sbjct: 46 ENCSVVEGHLQILLMFTATGEDFRGLSFPRLTQVTDYLLLFRVYGLESLRDL-FPNLAVI 104
Query: 106 RGTQVYDG 113
RGT+++ G
Sbjct: 105 RGTRLFLG 112
Score = 29.6 bits (65), Expect = 1.5
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Query: 56 CEVVMGNLEIVLT-GHNADLSF---LQWIREVTGYVLVAMNEFSTLPL---PNLRVVRGT 108
C V G+L + L G+N + L + +TG++ + + F+ + L NL+++RG
Sbjct: 347 CTHVEGSLILNLRQGYNLEPQLQHSLGLVETITGFLKIK-HSFALVSLGFFKNLKLIRGD 405
Query: 109 QVYDGKFAIFVMLNYN 124
+ DG + ++V+ N N
Sbjct: 406 AMVDGNYTLYVLDNQN 421
>gi|39932581 hypothetical protein LOC55051 isoform 2 [Homo sapiens]
Length = 933
Score = 28.5 bits (62), Expect = 3.4
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 127 SSHALRQLRLTQLTGQFPMVPSGLTPQPAQDWYLLDDDPRLLTLSASSKVPVT 179
SSH L Q +L + QF VPSG TP PA YL D+ + + P+T
Sbjct: 397 SSHDL-QFQLVEAFLQFLGVPSGFTP-PASCLYLAMDENSIFDNGLYDEKPLT 447
>gi|39932583 hypothetical protein LOC55051 isoform 1 [Homo sapiens]
Length = 1164
Score = 28.5 bits (62), Expect = 3.4
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 127 SSHALRQLRLTQLTGQFPMVPSGLTPQPAQDWYLLDDDPRLLTLSASSKVPVT 179
SSH L Q +L + QF VPSG TP PA YL D+ + + P+T
Sbjct: 628 SSHDL-QFQLVEAFLQFLGVPSGFTP-PASCLYLAMDENSIFDNGLYDEKPLT 678
>gi|21536378 ATP-binding cassette, sub-family B (MDR/TAP), member 11
[Homo sapiens]
Length = 1321
Score = 28.1 bits (61), Expect = 4.4
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 25 SQAVCPGTLNGLSVTGDA--ENQYQTLYKLYERCEVVMGNLEIVLTGHNADLSFLQWIRE 82
+ + PG + L A Q + + Y+ CE + + + GH+ +QW+R+
Sbjct: 442 NMVIKPGEMTALVGPSGAGKSTALQLIQRFYDPCEGM-----VTVDGHDIRSLNIQWLRD 496
Query: 83 VTGYVLVAMNEFSTLPLPNLRVVR 106
G V FST N+R R
Sbjct: 497 QIGIVEQEPVLFSTTIAENIRYGR 520
>gi|56243583 WD repeat domain 18 [Homo sapiens]
Length = 432
Score = 28.1 bits (61), Expect = 4.4
Identities = 15/60 (25%), Positives = 31/60 (51%)
Query: 28 VCPGTLNGLSVTGDAENQYQTLYKLYERCEVVMGNLEIVLTGHNADLSFLQWIREVTGYV 87
+CPG + L+ + + + + EV GNL ++L+ H D+S LQ+ + + ++
Sbjct: 78 MCPGPVTCLTASPNGLYVLAGVAESIHLWEVSTGNLLVILSRHYQDVSCLQFTGDSSHFI 137
>gi|242332527 hypothetical protein LOC65250 [Homo sapiens]
Length = 3197
Score = 27.7 bits (60), Expect = 5.7
Identities = 14/40 (35%), Positives = 17/40 (42%)
Query: 140 TGQFPMVPSGLTPQPAQDWYLLDDDPRLLTLSASSKVPVT 179
TG P VP PQP + W L D L A+ P +
Sbjct: 2243 TGSIPQVPFRPLPQPREAWGLSDSFQPALPQRAAQTTPAS 2282
>gi|122937512 myosin VIIB [Homo sapiens]
Length = 2116
Score = 27.3 bits (59), Expect = 7.5
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 60 MGNLEIVLTGHNADLSFLQW-IREVTGYVLVAMNEFSTLPLPNLRVVR 106
+G+L HN + + Q I TG +LVA+N F LPL L V+
Sbjct: 73 LGDLNEAGMVHNLLIRYQQHKIYTYTGSILVAVNPFQVLPLYTLEQVQ 120
>gi|26051258 RAS guanyl releasing protein 4 isoform a [Homo sapiens]
Length = 673
Score = 26.9 bits (58), Expect = 9.8
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 119 VMLNYNTNSSHALRQLRLTQLTGQFPMVPSGLTPQPAQ 156
V NY+ + Q +L+G FP GL P P Q
Sbjct: 474 VFKNYDPEGRGTISQEDFERLSGNFPFACHGLHPPPRQ 511
>gi|226246586 RAS guanyl releasing protein 4 isoform g [Homo
sapiens]
Length = 576
Score = 26.9 bits (58), Expect = 9.8
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 119 VMLNYNTNSSHALRQLRLTQLTGQFPMVPSGLTPQPAQ 156
V NY+ + Q +L+G FP GL P P Q
Sbjct: 377 VFKNYDPEGRGTISQEDFERLSGNFPFACHGLHPPPRQ 414
>gi|226246584 RAS guanyl releasing protein 4 isoform f [Homo
sapiens]
Length = 484
Score = 26.9 bits (58), Expect = 9.8
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 119 VMLNYNTNSSHALRQLRLTQLTGQFPMVPSGLTPQPAQ 156
V NY+ + Q +L+G FP GL P P Q
Sbjct: 285 VFKNYDPEGRGTISQEDFERLSGNFPFACHGLHPPPRQ 322
>gi|226246581 RAS guanyl releasing protein 4 isoform e [Homo
sapiens]
Length = 639
Score = 26.9 bits (58), Expect = 9.8
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 119 VMLNYNTNSSHALRQLRLTQLTGQFPMVPSGLTPQPAQ 156
V NY+ + Q +L+G FP GL P P Q
Sbjct: 440 VFKNYDPEGRGTISQEDFERLSGNFPFACHGLHPPPRQ 477
>gi|226246579 RAS guanyl releasing protein 4 isoform d [Homo
sapiens]
Length = 604
Score = 26.9 bits (58), Expect = 9.8
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 119 VMLNYNTNSSHALRQLRLTQLTGQFPMVPSGLTPQPAQ 156
V NY+ + Q +L+G FP GL P P Q
Sbjct: 405 VFKNYDPEGRGTISQEDFERLSGNFPFACHGLHPPPRQ 442
>gi|226246577 RAS guanyl releasing protein 4 isoform c [Homo
sapiens]
Length = 581
Score = 26.9 bits (58), Expect = 9.8
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 119 VMLNYNTNSSHALRQLRLTQLTGQFPMVPSGLTPQPAQ 156
V NY+ + Q +L+G FP GL P P Q
Sbjct: 382 VFKNYDPEGRGTISQEDFERLSGNFPFACHGLHPPPRQ 419
>gi|226246575 RAS guanyl releasing protein 4 isoform b [Homo
sapiens]
Length = 659
Score = 26.9 bits (58), Expect = 9.8
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 119 VMLNYNTNSSHALRQLRLTQLTGQFPMVPSGLTPQPAQ 156
V NY+ + Q +L+G FP GL P P Q
Sbjct: 460 VFKNYDPEGRGTISQEDFERLSGNFPFACHGLHPPPRQ 497
>gi|167466207 intercellular adhesion molecule 3 precursor [Homo
sapiens]
Length = 547
Score = 26.9 bits (58), Expect = 9.8
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 23 GNSQAVCPGTLNGLSVTGDAENQYQTLYKLYERCEV 58
GNS+ +C NG +TG + T+Y+L ER E+
Sbjct: 90 GNSRILCSVYCNGSQITGSSN---ITVYRLPERVEL 122
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,453,128
Number of Sequences: 37866
Number of extensions: 256330
Number of successful extensions: 580
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 557
Number of HSP's gapped (non-prelim): 31
length of query: 183
length of database: 18,247,518
effective HSP length: 96
effective length of query: 87
effective length of database: 14,612,382
effective search space: 1271277234
effective search space used: 1271277234
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.