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Search of human proteins with 5454168
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5454168 RanBP-type and C3HC4-type zinc finger containing 1
isoform 1 [Homo sapiens]
(468 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5454168 RanBP-type and C3HC4-type zinc finger containing 1 is... 1005 0.0
gi|144953898 RanBP-type and C3HC4-type zinc finger containing 1 ... 978 0.0
gi|118918415 shank-interacting protein-like 1 [Homo sapiens] 117 2e-26
gi|46370057 ring finger protein 216 isoform b [Homo sapiens] 70 4e-12
gi|46358403 ring finger protein 216 isoform a [Homo sapiens] 70 4e-12
gi|188219577 ring finger protein 19B isoform a [Homo sapiens] 69 7e-12
gi|188219579 ring finger protein 19B isoform b [Homo sapiens] 69 9e-12
gi|34577102 ring finger protein 14 isoform 1 [Homo sapiens] 68 2e-11
gi|34577100 ring finger protein 14 isoform 1 [Homo sapiens] 68 2e-11
gi|34577098 ring finger protein 14 isoform 1 [Homo sapiens] 68 2e-11
gi|34577096 ring finger protein 14 isoform 2 [Homo sapiens] 68 2e-11
gi|4757762 ring finger protein 14 isoform 1 [Homo sapiens] 68 2e-11
gi|22749145 ring finger protein 217 [Homo sapiens] 67 3e-11
gi|50284696 IBR domain containing 2 [Homo sapiens] 66 6e-11
gi|38045938 ring finger protein 144 [Homo sapiens] 66 8e-11
gi|109150431 ring finger protein 31 [Homo sapiens] 56 8e-08
gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo... 55 1e-07
gi|148596953 ankyrin repeat and IBR domain containing 1 [Homo sa... 54 2e-07
gi|5453557 ariadne homolog 2 [Homo sapiens] 54 3e-07
gi|35493801 ring finger protein 19 [Homo sapiens] 54 4e-07
gi|35493782 ring finger protein 19 [Homo sapiens] 54 4e-07
gi|187761373 ariadne ubiquitin-conjugating enzyme E2 binding pro... 52 9e-07
gi|169790973 parkin isoform 3 [Homo sapiens] 48 2e-05
gi|169790971 parkin isoform 2 [Homo sapiens] 48 2e-05
gi|169790969 parkin isoform 1 [Homo sapiens] 48 2e-05
gi|148528975 LON peptidase N-terminal domain and ring finger 2 [... 42 0.001
gi|55953100 tubby like protein 4 isoform 1 [Homo sapiens] 42 0.002
gi|15812226 transcriptional regulating factor 1 [Homo sapiens] 41 0.002
gi|58761530 polycomb group ring finger 6 isoform a [Homo sapiens] 41 0.002
gi|37655165 polycomb group ring finger 6 isoform b [Homo sapiens] 41 0.002
>gi|5454168 RanBP-type and C3HC4-type zinc finger containing 1
isoform 1 [Homo sapiens]
Length = 468
Score = 1005 bits (2599), Expect = 0.0
Identities = 468/468 (100%), Positives = 468/468 (100%)
Query: 1 MGTATPDGREDQERLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWV 60
MGTATPDGREDQERLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWV
Sbjct: 1 MGTATPDGREDQERLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWV 60
Query: 61 IGQRLARDQETLHSHGVRQNGDSAYLYLLSARNTSLNPQELQRERQLRMLEDLGFKDLTL 120
IGQRLARDQETLHSHGVRQNGDSAYLYLLSARNTSLNPQELQRERQLRMLEDLGFKDLTL
Sbjct: 61 IGQRLARDQETLHSHGVRQNGDSAYLYLLSARNTSLNPQELQRERQLRMLEDLGFKDLTL 120
Query: 121 QPRGPLEPGPPKPGVPQEPGRGQPDAVPEPPPVGWQCPGCTFINKPTRPGCEMCCRARPE 180
QPRGPLEPGPPKPGVPQEPGRGQPDAVPEPPPVGWQCPGCTFINKPTRPGCEMCCRARPE
Sbjct: 121 QPRGPLEPGPPKPGVPQEPGRGQPDAVPEPPPVGWQCPGCTFINKPTRPGCEMCCRARPE 180
Query: 181 AYQVPASYQPDEEERARLAGEEEALRQYQQRKQQQQEGNYLQHVQLDQRSLVLNTEPAEC 240
AYQVPASYQPDEEERARLAGEEEALRQYQQRKQQQQEGNYLQHVQLDQRSLVLNTEPAEC
Sbjct: 181 AYQVPASYQPDEEERARLAGEEEALRQYQQRKQQQQEGNYLQHVQLDQRSLVLNTEPAEC 240
Query: 241 PVCYSVLAPGEAVVLRECLHTFCRECLQGTIRNSQEAEVSCPFIDNTYSCSGKLLEREIK 300
PVCYSVLAPGEAVVLRECLHTFCRECLQGTIRNSQEAEVSCPFIDNTYSCSGKLLEREIK
Sbjct: 241 PVCYSVLAPGEAVVLRECLHTFCRECLQGTIRNSQEAEVSCPFIDNTYSCSGKLLEREIK 300
Query: 301 ALLTPEDYQRFLDLGISIAENRSAFSYHCKTPDCKGWCFFEDDVNEFTCPVCFHVNCLLC 360
ALLTPEDYQRFLDLGISIAENRSAFSYHCKTPDCKGWCFFEDDVNEFTCPVCFHVNCLLC
Sbjct: 301 ALLTPEDYQRFLDLGISIAENRSAFSYHCKTPDCKGWCFFEDDVNEFTCPVCFHVNCLLC 360
Query: 361 KAIHEQMNCKEYQEDLALRAQNDVAARQTTEMLKVMLQQGEAMRCPQCQIVVQKKDGCDW 420
KAIHEQMNCKEYQEDLALRAQNDVAARQTTEMLKVMLQQGEAMRCPQCQIVVQKKDGCDW
Sbjct: 361 KAIHEQMNCKEYQEDLALRAQNDVAARQTTEMLKVMLQQGEAMRCPQCQIVVQKKDGCDW 420
Query: 421 IRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIPCHPSCQNCH 468
IRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIPCHPSCQNCH
Sbjct: 421 IRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIPCHPSCQNCH 468
>gi|144953898 RanBP-type and C3HC4-type zinc finger containing 1
isoform 2 [Homo sapiens]
Length = 510
Score = 978 bits (2529), Expect = 0.0
Identities = 455/455 (100%), Positives = 455/455 (100%)
Query: 14 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLH 73
RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLH
Sbjct: 56 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLH 115
Query: 74 SHGVRQNGDSAYLYLLSARNTSLNPQELQRERQLRMLEDLGFKDLTLQPRGPLEPGPPKP 133
SHGVRQNGDSAYLYLLSARNTSLNPQELQRERQLRMLEDLGFKDLTLQPRGPLEPGPPKP
Sbjct: 116 SHGVRQNGDSAYLYLLSARNTSLNPQELQRERQLRMLEDLGFKDLTLQPRGPLEPGPPKP 175
Query: 134 GVPQEPGRGQPDAVPEPPPVGWQCPGCTFINKPTRPGCEMCCRARPEAYQVPASYQPDEE 193
GVPQEPGRGQPDAVPEPPPVGWQCPGCTFINKPTRPGCEMCCRARPEAYQVPASYQPDEE
Sbjct: 176 GVPQEPGRGQPDAVPEPPPVGWQCPGCTFINKPTRPGCEMCCRARPEAYQVPASYQPDEE 235
Query: 194 ERARLAGEEEALRQYQQRKQQQQEGNYLQHVQLDQRSLVLNTEPAECPVCYSVLAPGEAV 253
ERARLAGEEEALRQYQQRKQQQQEGNYLQHVQLDQRSLVLNTEPAECPVCYSVLAPGEAV
Sbjct: 236 ERARLAGEEEALRQYQQRKQQQQEGNYLQHVQLDQRSLVLNTEPAECPVCYSVLAPGEAV 295
Query: 254 VLRECLHTFCRECLQGTIRNSQEAEVSCPFIDNTYSCSGKLLEREIKALLTPEDYQRFLD 313
VLRECLHTFCRECLQGTIRNSQEAEVSCPFIDNTYSCSGKLLEREIKALLTPEDYQRFLD
Sbjct: 296 VLRECLHTFCRECLQGTIRNSQEAEVSCPFIDNTYSCSGKLLEREIKALLTPEDYQRFLD 355
Query: 314 LGISIAENRSAFSYHCKTPDCKGWCFFEDDVNEFTCPVCFHVNCLLCKAIHEQMNCKEYQ 373
LGISIAENRSAFSYHCKTPDCKGWCFFEDDVNEFTCPVCFHVNCLLCKAIHEQMNCKEYQ
Sbjct: 356 LGISIAENRSAFSYHCKTPDCKGWCFFEDDVNEFTCPVCFHVNCLLCKAIHEQMNCKEYQ 415
Query: 374 EDLALRAQNDVAARQTTEMLKVMLQQGEAMRCPQCQIVVQKKDGCDWIRCTVCHTEICWV 433
EDLALRAQNDVAARQTTEMLKVMLQQGEAMRCPQCQIVVQKKDGCDWIRCTVCHTEICWV
Sbjct: 416 EDLALRAQNDVAARQTTEMLKVMLQQGEAMRCPQCQIVVQKKDGCDWIRCTVCHTEICWV 475
Query: 434 TKGPRWGPGGPGDTSGGCRCRVNGIPCHPSCQNCH 468
TKGPRWGPGGPGDTSGGCRCRVNGIPCHPSCQNCH
Sbjct: 476 TKGPRWGPGGPGDTSGGCRCRVNGIPCHPSCQNCH 510
>gi|118918415 shank-interacting protein-like 1 [Homo sapiens]
Length = 387
Score = 117 bits (293), Expect = 2e-26
Identities = 75/177 (42%), Positives = 96/177 (54%), Gaps = 31/177 (17%)
Query: 14 RLWVSVEDAQM-----HTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARD 68
RL V++EDA + + L V P TVA+L++ VF + GFPP +Q+WVIG+ L
Sbjct: 220 RLQVTLEDAASAASAASSAHVALQVHPHCTVAALQEQVFSELGFPPAVQRWVIGRCLCVP 279
Query: 69 QETLHSHGVRQNGDSAYLYLLSARN----TSLNPQELQRERQLRMLEDLGFKDLTLQPRG 124
+ +L S+GVRQ+GD A+LYLLSA T +PQ Q +M +LG
Sbjct: 280 ERSLASYGVRQDGDPAFLYLLSAPREAPATGPSPQHPQ-----KMDGELG---------- 324
Query: 125 PLEPGPPKPGVPQEPGRGQPDA--VPEPPPVGWQCPGCTFINKPTRPGCEMCCRARP 179
PP G+P P QP A +P P W CP CTFIN P RPGCEMC RP
Sbjct: 325 --RLFPPSLGLPPGP---QPAASSLPSPLQPSWSCPSCTFINAPDRPGCEMCSTQRP 376
>gi|46370057 ring finger protein 216 isoform b [Homo sapiens]
Length = 866
Score = 70.1 bits (170), Expect = 4e-12
Identities = 71/299 (23%), Positives = 121/299 (40%), Gaps = 62/299 (20%)
Query: 193 EERARLAGEEEALRQYQQR-KQQQQEGNYLQHVQLDQRSLVLNTEPAECPVCYSVLAPGE 251
+ RA L ++ Y+Q+ K+ + ++L +Q+++ + + EC CY P E
Sbjct: 467 DRRALLPAVQQEQEFYEQKIKEMAEHEDFLLALQMNEEQYQKDGQLIECRCCYGEF-PFE 525
Query: 252 AVVLRECLHTFCRECLQGTIRNSQEA-------EVSCPFIDNTYSCSGKLLEREIKALLT 304
+ H FC+ECL IR +QEA E+SC T S LE+ + +
Sbjct: 526 ELTQCADAHLFCKECL---IRYAQEAVFGSGKLELSCMEGSCTCSFPTSELEKVLPQTIL 582
Query: 305 PEDYQRFLDLGISIAENRSAFSYH---CKTPDCKGWCFFEDDVNEFTC--PVCFHVNCLL 359
+ Y+R AE A +Y + P C + DV F+C P C C
Sbjct: 583 YKYYERK-------AEEEVAAAYADELVRCPSCSFPALLDSDVKRFSCPNPHCRKETCRK 635
Query: 360 CKAI---HEQMNCKEYQEDLALRAQNDVAARQTTEMLKVMLQQGEAMRCPQCQIVVQKKD 416
C+ + H + C+E E ++ + + + T ++ +C +C + K +
Sbjct: 636 CQGLWKEHNGLTCEELAEKDDIKYRTSIEEKMTAARIR---------KCHKCGTGLIKSE 686
Query: 417 GCDWIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIP--C-HP-----SCQNC 467
GC+ + C C ++C++ CR +NG C HP CQ C
Sbjct: 687 GCNRMSCR-CGAQMCYL-----------------CRVSINGYDHFCQHPRSPGAPCQEC 727
>gi|46358403 ring finger protein 216 isoform a [Homo sapiens]
Length = 923
Score = 70.1 bits (170), Expect = 4e-12
Identities = 71/299 (23%), Positives = 121/299 (40%), Gaps = 62/299 (20%)
Query: 193 EERARLAGEEEALRQYQQR-KQQQQEGNYLQHVQLDQRSLVLNTEPAECPVCYSVLAPGE 251
+ RA L ++ Y+Q+ K+ + ++L +Q+++ + + EC CY P E
Sbjct: 524 DRRALLPAVQQEQEFYEQKIKEMAEHEDFLLALQMNEEQYQKDGQLIECRCCYGEF-PFE 582
Query: 252 AVVLRECLHTFCRECLQGTIRNSQEA-------EVSCPFIDNTYSCSGKLLEREIKALLT 304
+ H FC+ECL IR +QEA E+SC T S LE+ + +
Sbjct: 583 ELTQCADAHLFCKECL---IRYAQEAVFGSGKLELSCMEGSCTCSFPTSELEKVLPQTIL 639
Query: 305 PEDYQRFLDLGISIAENRSAFSYH---CKTPDCKGWCFFEDDVNEFTC--PVCFHVNCLL 359
+ Y+R AE A +Y + P C + DV F+C P C C
Sbjct: 640 YKYYERK-------AEEEVAAAYADELVRCPSCSFPALLDSDVKRFSCPNPHCRKETCRK 692
Query: 360 CKAI---HEQMNCKEYQEDLALRAQNDVAARQTTEMLKVMLQQGEAMRCPQCQIVVQKKD 416
C+ + H + C+E E ++ + + + T ++ +C +C + K +
Sbjct: 693 CQGLWKEHNGLTCEELAEKDDIKYRTSIEEKMTAARIR---------KCHKCGTGLIKSE 743
Query: 417 GCDWIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIP--C-HP-----SCQNC 467
GC+ + C C ++C++ CR +NG C HP CQ C
Sbjct: 744 GCNRMSCR-CGAQMCYL-----------------CRVSINGYDHFCQHPRSPGAPCQEC 784
>gi|188219577 ring finger protein 19B isoform a [Homo sapiens]
Length = 732
Score = 69.3 bits (168), Expect = 7e-12
Identities = 85/333 (25%), Positives = 111/333 (33%), Gaps = 96/333 (28%)
Query: 127 EPGPPKPGVPQEPGRGQPDAVPEPPPVGWQCPGCTFINKPTRPGCEMCCRARPEAYQVPA 186
EP PP P P P A PPP P P E A EA A
Sbjct: 55 EPPPPAAQPPPAPA---PAAAQGPPPEAL----------PAEPAAE----AEAEAAAAAA 97
Query: 187 SYQPDEEERARLAGEEEALRQYQQRKQQQQEGNYLQHVQLDQRSLVLNTEPAECPVCYSV 246
D+EE A G E ECP+C
Sbjct: 98 EPGFDDEEAAEGGGP--------------------------------GAEEVECPLCLVR 125
Query: 247 LAPGEAVVLRECLHTFCRECLQGTIR---NSQEAEVSCPFIDNTYSCSGKLLEREIKALL 303
L P A L C H CR+CL+ +R + +SCP CS +L +I+ LL
Sbjct: 126 LPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVPISCP------ECSERLNPHDIRLLL 179
Query: 304 TP----EDYQRFLDLGISIAENRSAFSYHCKTPDCKGWCFFED---DVNEFTCPVCFHVN 356
Y+ F+ Y PDC+ WC D V + C C +
Sbjct: 180 ADPPLMHKYEEFM-----------LRRYLASDPDCR-WCPAPDCGYAVIAYGCASCPKLT 227
Query: 357 ----------CLLCKAI-HEQMNCKEYQEDLALRAQNDVAARQTTEMLKVMLQQGEA--- 402
C CK I H C ++ RAQ + T L + G A
Sbjct: 228 CEREGCQTEFCYHCKQIWHPNQTCDMARQQ---RAQTLRVRTKHTSGLSYGQESGPADDI 284
Query: 403 MRCPQCQ-IVVQKKDG-CDWIRCTVCHTEICWV 433
CP+C +++ DG C+ + C VC E CW+
Sbjct: 285 KPCPRCSAYIIKMNDGSCNHMTCAVCGCEFCWL 317
>gi|188219579 ring finger protein 19B isoform b [Homo sapiens]
Length = 587
Score = 68.9 bits (167), Expect = 9e-12
Identities = 84/332 (25%), Positives = 111/332 (33%), Gaps = 95/332 (28%)
Query: 127 EPGPPKPGVPQEPGRGQPDAVPEPPPVGWQCPGCTFINKPTRPGCEMCCRARPEAYQVPA 186
EP PP P P P A PPP P P E A EA A
Sbjct: 55 EPPPPAAQPPPAPA---PAAAQGPPPEAL----------PAEPAAE----AEAEAAAAAA 97
Query: 187 SYQPDEEERARLAGEEEALRQYQQRKQQQQEGNYLQHVQLDQRSLVLNTEPAECPVCYSV 246
D+EE A G E ECP+C
Sbjct: 98 EPGFDDEEAAEGGGP--------------------------------GAEEVECPLCLVR 125
Query: 247 LAPGEAVVLRECLHTFCRECLQGTIR---NSQEAEVSCPFIDNTYSCSGKLLEREIKALL 303
L P A L C H CR+CL+ +R + +SCP CS +L +I+ LL
Sbjct: 126 LPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVPISCP------ECSERLNPHDIRLLL 179
Query: 304 TP----EDYQRFLDLGISIAENRSAFSYHCKTPDCKGWCFFED---DVNEFTCPVCFHVN 356
Y+ F+ Y PDC+ WC D V + C C +
Sbjct: 180 ADPPLMHKYEEFM-----------LRRYLASDPDCR-WCPAPDCGYAVIAYGCASCPKLT 227
Query: 357 ----------CLLCKAI-HEQMNCKEYQEDLALRAQNDVAARQTTEMLKVMLQQG--EAM 403
C CK I H C ++ RAQ + T L + G +
Sbjct: 228 CEREGCQTEFCYHCKQIWHPNQTCDMARQQ---RAQTLRVRTKHTSGLSYGQESGPDDIK 284
Query: 404 RCPQCQ-IVVQKKDG-CDWIRCTVCHTEICWV 433
CP+C +++ DG C+ + C VC E CW+
Sbjct: 285 PCPRCSAYIIKMNDGSCNHMTCAVCGCEFCWL 316
>gi|34577102 ring finger protein 14 isoform 1 [Homo sapiens]
Length = 474
Score = 68.2 bits (165), Expect = 2e-11
Identities = 56/232 (24%), Positives = 96/232 (41%), Gaps = 27/232 (11%)
Query: 228 QRSLVLNTEPAECPVCYSVLAPGEAVVLRECLHTFCRECLQG----TIRNSQEAEVSCPF 283
Q+ N++ C +C+ E + EC H +C+ CL+ IR+ Q ++CP
Sbjct: 208 QQIKCFNSKLFLCSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCP- 266
Query: 284 IDNTYSCSGKLLEREIKALLTPEDYQRFLDLGISIAENRSAFSYHCKTPDCKGWCFFEDD 343
C ++K L+ E + R+ L + + + A +C P C+ E
Sbjct: 267 ---EPKCPSVATPGQVKELVEAELFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQEPG 323
Query: 344 VNEFTCPVCFHVNCLLCKAIHEQMN-CKEYQEDLA-LR---AQNDVAARQTTE------M 392
C C C LC+ + ++ CK E L LR Q D A ++ + +
Sbjct: 324 CTMGICSSCNFAFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRYGKRV 383
Query: 393 LKVMLQQGEAMR--------CPQCQIVVQKKDGCDWIRCTVCHTEICWVTKG 436
++ L++ E+ CP C ++K DGC+ + CT C CW+ G
Sbjct: 384 IQKALEEMESKEWLEKNSKSCPCCGTPIEKLDGCNKMTCTGCMQYFCWICMG 435
>gi|34577100 ring finger protein 14 isoform 1 [Homo sapiens]
Length = 474
Score = 68.2 bits (165), Expect = 2e-11
Identities = 56/232 (24%), Positives = 96/232 (41%), Gaps = 27/232 (11%)
Query: 228 QRSLVLNTEPAECPVCYSVLAPGEAVVLRECLHTFCRECLQG----TIRNSQEAEVSCPF 283
Q+ N++ C +C+ E + EC H +C+ CL+ IR+ Q ++CP
Sbjct: 208 QQIKCFNSKLFLCSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCP- 266
Query: 284 IDNTYSCSGKLLEREIKALLTPEDYQRFLDLGISIAENRSAFSYHCKTPDCKGWCFFEDD 343
C ++K L+ E + R+ L + + + A +C P C+ E
Sbjct: 267 ---EPKCPSVATPGQVKELVEAELFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQEPG 323
Query: 344 VNEFTCPVCFHVNCLLCKAIHEQMN-CKEYQEDLA-LR---AQNDVAARQTTE------M 392
C C C LC+ + ++ CK E L LR Q D A ++ + +
Sbjct: 324 CTMGICSSCNFAFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRYGKRV 383
Query: 393 LKVMLQQGEAMR--------CPQCQIVVQKKDGCDWIRCTVCHTEICWVTKG 436
++ L++ E+ CP C ++K DGC+ + CT C CW+ G
Sbjct: 384 IQKALEEMESKEWLEKNSKSCPCCGTPIEKLDGCNKMTCTGCMQYFCWICMG 435
>gi|34577098 ring finger protein 14 isoform 1 [Homo sapiens]
Length = 474
Score = 68.2 bits (165), Expect = 2e-11
Identities = 56/232 (24%), Positives = 96/232 (41%), Gaps = 27/232 (11%)
Query: 228 QRSLVLNTEPAECPVCYSVLAPGEAVVLRECLHTFCRECLQG----TIRNSQEAEVSCPF 283
Q+ N++ C +C+ E + EC H +C+ CL+ IR+ Q ++CP
Sbjct: 208 QQIKCFNSKLFLCSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCP- 266
Query: 284 IDNTYSCSGKLLEREIKALLTPEDYQRFLDLGISIAENRSAFSYHCKTPDCKGWCFFEDD 343
C ++K L+ E + R+ L + + + A +C P C+ E
Sbjct: 267 ---EPKCPSVATPGQVKELVEAELFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQEPG 323
Query: 344 VNEFTCPVCFHVNCLLCKAIHEQMN-CKEYQEDLA-LR---AQNDVAARQTTE------M 392
C C C LC+ + ++ CK E L LR Q D A ++ + +
Sbjct: 324 CTMGICSSCNFAFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRYGKRV 383
Query: 393 LKVMLQQGEAMR--------CPQCQIVVQKKDGCDWIRCTVCHTEICWVTKG 436
++ L++ E+ CP C ++K DGC+ + CT C CW+ G
Sbjct: 384 IQKALEEMESKEWLEKNSKSCPCCGTPIEKLDGCNKMTCTGCMQYFCWICMG 435
>gi|34577096 ring finger protein 14 isoform 2 [Homo sapiens]
Length = 348
Score = 68.2 bits (165), Expect = 2e-11
Identities = 56/232 (24%), Positives = 96/232 (41%), Gaps = 27/232 (11%)
Query: 228 QRSLVLNTEPAECPVCYSVLAPGEAVVLRECLHTFCRECLQG----TIRNSQEAEVSCPF 283
Q+ N++ C +C+ E + EC H +C+ CL+ IR+ Q ++CP
Sbjct: 82 QQIKCFNSKLFLCSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCP- 140
Query: 284 IDNTYSCSGKLLEREIKALLTPEDYQRFLDLGISIAENRSAFSYHCKTPDCKGWCFFEDD 343
C ++K L+ E + R+ L + + + A +C P C+ E
Sbjct: 141 ---EPKCPSVATPGQVKELVEAELFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQEPG 197
Query: 344 VNEFTCPVCFHVNCLLCKAIHEQMN-CKEYQEDLA-LR---AQNDVAARQTTE------M 392
C C C LC+ + ++ CK E L LR Q D A ++ + +
Sbjct: 198 CTMGICSSCNFAFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRYGKRV 257
Query: 393 LKVMLQQGEAMR--------CPQCQIVVQKKDGCDWIRCTVCHTEICWVTKG 436
++ L++ E+ CP C ++K DGC+ + CT C CW+ G
Sbjct: 258 IQKALEEMESKEWLEKNSKSCPCCGTPIEKLDGCNKMTCTGCMQYFCWICMG 309
>gi|4757762 ring finger protein 14 isoform 1 [Homo sapiens]
Length = 474
Score = 68.2 bits (165), Expect = 2e-11
Identities = 56/232 (24%), Positives = 96/232 (41%), Gaps = 27/232 (11%)
Query: 228 QRSLVLNTEPAECPVCYSVLAPGEAVVLRECLHTFCRECLQG----TIRNSQEAEVSCPF 283
Q+ N++ C +C+ E + EC H +C+ CL+ IR+ Q ++CP
Sbjct: 208 QQIKCFNSKLFLCSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCP- 266
Query: 284 IDNTYSCSGKLLEREIKALLTPEDYQRFLDLGISIAENRSAFSYHCKTPDCKGWCFFEDD 343
C ++K L+ E + R+ L + + + A +C P C+ E
Sbjct: 267 ---EPKCPSVATPGQVKELVEAELFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQEPG 323
Query: 344 VNEFTCPVCFHVNCLLCKAIHEQMN-CKEYQEDLA-LR---AQNDVAARQTTE------M 392
C C C LC+ + ++ CK E L LR Q D A ++ + +
Sbjct: 324 CTMGICSSCNFAFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRYGKRV 383
Query: 393 LKVMLQQGEAMR--------CPQCQIVVQKKDGCDWIRCTVCHTEICWVTKG 436
++ L++ E+ CP C ++K DGC+ + CT C CW+ G
Sbjct: 384 IQKALEEMESKEWLEKNSKSCPCCGTPIEKLDGCNKMTCTGCMQYFCWICMG 435
>gi|22749145 ring finger protein 217 [Homo sapiens]
Length = 275
Score = 67.0 bits (162), Expect = 3e-11
Identities = 48/172 (27%), Positives = 76/172 (44%), Gaps = 35/172 (20%)
Query: 276 EAEVSCPFIDNTYSCSGKLLEREIKALLTPED---YQRFLDLGISIAENRSAFSYHCKTP 332
+ E+ CP + C L E + LT ED Y+ FL+LG + + P
Sbjct: 7 QVEIKCPITE----CFEFLEETTVVYNLTHEDSIKYKYFLELGRIDSSTKPC-------P 55
Query: 333 DCKGWCFFE-----------DDVNEFTCPVCFHVNCLLCKAI-HEQMNCKEYQEDLALRA 380
CK + F+ + + CP C V C C + HE +NCKEY++
Sbjct: 56 QCKHFTTFKKKGHIPTPSRSESKYKIQCPTCQFVWCFKCHSPWHEGVNCKEYKK------ 109
Query: 381 QNDVAARQTTEMLKVMLQQGEAMRCPQCQIVVQKKDGCDWIRCTVCHTEICW 432
D R ++ Q A +CP+C+I +Q+ +GCD + C+ C+T C+
Sbjct: 110 -GDKLLRHWAS--EIEHGQRNAQKCPKCKIHIQRTEGCDHMTCSQCNTNFCY 158
>gi|50284696 IBR domain containing 2 [Homo sapiens]
Length = 303
Score = 66.2 bits (160), Expect = 6e-11
Identities = 48/202 (23%), Positives = 79/202 (39%), Gaps = 20/202 (9%)
Query: 240 CPVCYSVLAPGEAVVLRECLHTFCRECL----QGTIRNSQEAEVSCPFIDNTYSCSGKLL 295
C +C + + L+EC FC CL Q IR + ++CP D G L
Sbjct: 30 CKLCLCEQSLDKMTTLQECQCIFCTACLKQYMQLAIREGCGSPITCP--DMVCLNHGTLQ 87
Query: 296 EREIKALLTPEDYQRFLDLGISIAENRSAFSYHCKTPDCKGWC-FFEDDVNE---FTCPV 351
E EI L+ + +Q + L + + C DC+ C D + CP
Sbjct: 88 EAEIACLVPVDQFQLYQRLKFEREVHLDPYRTWCPVADCQTVCPVASSDPGQPVLVECPS 147
Query: 352 CFHVNCLLCK-AIHEQMNCKEYQEDLALRAQNDVAARQTTEMLKVMLQQGEAMRCPQCQI 410
C C CK A H +++C++ Q + + +K +CP C++
Sbjct: 148 CHLKFCSCCKDAWHAEVSCRDSQPIVLPTEHRALFGTDAEAPIK---------QCPVCRV 198
Query: 411 VVQKKDGCDWIRCTVCHTEICW 432
+++ +GC + C C CW
Sbjct: 199 YIERNEGCAQMMCKNCKHTFCW 220
Score = 30.4 bits (67), Expect = 3.6
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 239 ECPVCYSVLAPGEA---VVLRECLHTFCRECLQ 268
+CPVC + E ++ + C HTFC CLQ
Sbjct: 192 QCPVCRVYIERNEGCAQMMCKNCKHTFCWYCLQ 224
>gi|38045938 ring finger protein 144 [Homo sapiens]
Length = 292
Score = 65.9 bits (159), Expect = 8e-11
Identities = 48/202 (23%), Positives = 71/202 (35%), Gaps = 18/202 (8%)
Query: 240 CPVCYSVLAPGEAVVLRECLHTFCRECLQG----TIRNSQEAEVSCPFIDNTYSCSGKLL 295
C +C + + +C FC CL+ I+ E +SCP D G L
Sbjct: 20 CKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCP--DAACPKQGHLQ 77
Query: 296 EREIKALLTPEDYQRFLDLGISIAENRSAFSYHCKTPDCKGWCFFED----DVNEFTCPV 351
E EI+ ++ E QR+ L C C+ C +D C
Sbjct: 78 ENEIECMVAAEIMQRYKKLQFEREVLFDPCRTWCPASTCQAVCQLQDVGLQTPQPVQCKA 137
Query: 352 CFHVNCLLCKAI-HEQMNCKEYQEDLALRAQNDVAARQTTEMLKVMLQQGEAMRCPQCQI 410
C C CKA H C E L + A K+ RCP+C++
Sbjct: 138 CRMEFCSTCKASWHPGQGCPETMPITFLPGETSAA-------FKMEEDDAPIKRCPKCKV 190
Query: 411 VVQKKDGCDWIRCTVCHTEICW 432
+++ +GC + C C CW
Sbjct: 191 YIERDEGCAQMMCKNCKHAFCW 212
>gi|109150431 ring finger protein 31 [Homo sapiens]
Length = 1072
Score = 55.8 bits (133), Expect = 8e-08
Identities = 57/250 (22%), Positives = 99/250 (39%), Gaps = 31/250 (12%)
Query: 202 EEALRQYQQRKQQQQEGNYLQHVQLDQ-RSLVLNTEPAECPVCYSVLAPGEAVVLRECLH 260
E AL Q+ + + G+ ++ V+ Q R+ + EC VC L L C
Sbjct: 660 ELALSLLQETPRNYELGDVVEAVRHSQDRAFLRRLLAQECAVCGWALPHNRMQALTSCEC 719
Query: 261 TFCRECLQG----TIRNSQEAEVSCP------FIDNTYSCSG-KLLEREIKALLTPEDYQ 309
T C +C + ++ ++ CP D+T S L+ +++ L P+ Y
Sbjct: 720 TICPDCFRQHFTIALKEKHITDMVCPACGRPDLTDDTQLLSYFSTLDIQLRESLEPDAYA 779
Query: 310 RF---LDLGISIAENRSAFSYHCKTPDCKGWCFFEDDVNEFTCPVCFHVNCLLCK----A 362
F L G+ + + + + C +E + E TCP C C+ CK
Sbjct: 780 LFHKKLTEGVLMRDPKFLWCAQCSFG-----FIYEREQLEATCPQCHQTFCVRCKRQWEE 834
Query: 363 IHEQMNCKEYQEDLALRAQNDVAARQTTEMLKVMLQQGEAMRCPQCQI-VVQKKDGCDWI 421
H +C+++Q + ND + L + LQ+ + CP+C+ + GC
Sbjct: 835 QHRGRSCEDFQN---WKRMND--PEYQAQGLAMYLQE-NGIDCPKCKFSYALARGGCMHF 888
Query: 422 RCTVCHTEIC 431
CT C + C
Sbjct: 889 HCTQCRHQFC 898
>gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo
sapiens]
Length = 2517
Score = 55.5 bits (132), Expect = 1e-07
Identities = 46/211 (21%), Positives = 77/211 (36%), Gaps = 29/211 (13%)
Query: 237 PAECPVCYSVLAPGEAVVLRECLHTFCREC----LQGTIRNSQEAEVSCPFIDNTYSCSG 292
P CPVC S L + + C+H C+ C L I + +CP D +G
Sbjct: 2067 PDHCPVCVSPLGCDDDLPSLCCMHYCCKSCWNEYLTTRIEQNLVLNCTCPIADCPAQPTG 2126
Query: 293 KLLEREIKALLTPEDYQRFLDLGISIAENRSAFSYHCKTPDCKGWCFFEDDVNEFTCPVC 352
+ + + Y++ L G E+ S ++ C + TC C
Sbjct: 2127 AFIRAIVSSPEVISKYEKALLRGY--VESCSNLTWCTNPQGCDRILCRQGLGCGTTCSKC 2184
Query: 353 FHVNCLLCK--AIHEQMNCKE---------YQEDLALRAQNDVAARQTTEMLKVMLQQGE 401
+C C H +C Y + +++ AQ+ A+ ++
Sbjct: 2185 GWASCFNCSFPEAHYPASCGHMSQWVDDGGYYDGMSVEAQSKHLAKLISK---------- 2234
Query: 402 AMRCPQCQIVVQKKDGCDWIRCTVCHTEICW 432
RCP CQ ++K +GC + C C+ CW
Sbjct: 2235 --RCPSCQAPIEKNEGCLHMTCAKCNHGFCW 2263
>gi|148596953 ankyrin repeat and IBR domain containing 1 [Homo
sapiens]
Length = 1089
Score = 54.3 bits (129), Expect = 2e-07
Identities = 51/220 (23%), Positives = 87/220 (39%), Gaps = 31/220 (14%)
Query: 240 CPVCYSVLAPGEAVVLRECLHTFCREC----LQGTIRNSQEAEVSCPFIDNTYSCSGKLL 295
C +C ++ E V C H FCR C L I+ + + CP Y C +
Sbjct: 333 CDICMCSISVFEDPVDMPCGHDFCRGCWESFLNLKIQEGEAHNIFCP----AYDCFQLVP 388
Query: 296 EREIKALLTPEDYQRFLDLGI-SIAENRSAFSYHCKTPDC--------KGWCFFEDDVNE 346
I+++++ E +R+L I + EN A + C TP C +G D
Sbjct: 389 VDIIESVVSKEMDKRYLQFDIKAFVENNPAIKW-CPTPGCDRAVRLTKQGSNTSGSDTLS 447
Query: 347 FTCPVCFHVNC----LLC----KAIHEQMNCKEY----QEDLALRAQNDVAARQTTE-ML 393
F V+C L C HE +C+ + Q+ ++ + V + E
Sbjct: 448 FPLLRAPAVDCGKGHLFCWECLGEAHEPCDCQTWKNWLQKITEMKPEELVGVSEAYEDAA 507
Query: 394 KVMLQQGEAMRCPQCQIVVQKKDGCDWIRCTVCHTEICWV 433
+ + C C+ +QK +GC+ ++C C + CW+
Sbjct: 508 NCLWLLTNSKPCANCKSPIQKNEGCNHMQCAKCKYDFCWI 547
>gi|5453557 ariadne homolog 2 [Homo sapiens]
Length = 493
Score = 53.9 bits (128), Expect = 3e-07
Identities = 49/210 (23%), Positives = 81/210 (38%), Gaps = 27/210 (12%)
Query: 237 PAECPVCYSVLAPGEAVVLRECLHTFCRECLQG----TIRNSQEAEVSCPFIDNTYSCSG 292
P C VC + E ++ C H FCR C + +++ VSC D C
Sbjct: 136 PHHCAVCMQFVRK-ENLLSLACQHQFCRSCWEQHCSVLVKDGVGVGVSCMAQD----CPL 190
Query: 293 KLLEREIKALLTPED----YQRFLDLGISIAENRSAFSYHCKTPDCKGWCFFEDD-VNEF 347
+ E + LL E+ Y+R+L + + C DC ++
Sbjct: 191 RTPEDFVFPLLPNEELREKYRRYLFRDYVESHYQLQL---CPGADCPMVIRVQEPRARRV 247
Query: 348 TCPVCFHVNCLLCKAI-HEQMNCKEYQEDLALRAQNDVAARQTTEMLKVMLQQGEAMRCP 406
C C V C C+ + H +C ++ L A + A + K CP
Sbjct: 248 QCNRCNEVFCFKCRQMYHAPTDCATIRKWLTKCADDSETANYISAHTK---------DCP 298
Query: 407 QCQIVVQKKDGCDWIRCTVCHTEICWVTKG 436
+C I ++K GC+ ++C+ C + CW+ G
Sbjct: 299 KCNICIEKNGGCNHMQCSKCKHDFCWMCLG 328
>gi|35493801 ring finger protein 19 [Homo sapiens]
Length = 838
Score = 53.5 bits (127), Expect = 4e-07
Identities = 53/222 (23%), Positives = 87/222 (39%), Gaps = 48/222 (21%)
Query: 239 ECPVCYSVLAPGEAVVLRECLHTFCRECLQGTIR---NSQEAEVSCPFIDNTYSCSGKLL 295
ECP+C + + C H C +CL+ +R + +SCP C+ +
Sbjct: 131 ECPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEISESRVNISCP------ECTERFN 184
Query: 296 EREIKALLTP----EDYQRFLDLGISIAENRSAFSYHCKTPDCKGWCFFED---DVNEFT 348
+I+ +L+ E Y+ F+ +A+ PDC+ WC D V F
Sbjct: 185 PHDIRLILSDDVLMEKYEEFMLRRWLVAD-----------PDCR-WCPAPDCGYAVIAFG 232
Query: 349 CPVCFHVNC----------LLCKAI-HEQMNCKEYQEDLALRAQNDVAARQTTEMLKVML 397
C C + C CK I H C +++ RAQ+ + +
Sbjct: 233 CASCPKLTCGREGCGTEFCYHCKQIWHPNQTCDAARQE---RAQSLRLRTIRSSSISYSQ 289
Query: 398 QQGEAMR----CPQCQI-VVQKKDG-CDWIRCTVCHTEICWV 433
+ G A CP+C +++ DG C+ + C VC E CW+
Sbjct: 290 ESGAAADDIKPCPRCAAYIIKMNDGSCNHMTCAVCGCEFCWL 331
>gi|35493782 ring finger protein 19 [Homo sapiens]
Length = 838
Score = 53.5 bits (127), Expect = 4e-07
Identities = 53/222 (23%), Positives = 87/222 (39%), Gaps = 48/222 (21%)
Query: 239 ECPVCYSVLAPGEAVVLRECLHTFCRECLQGTIR---NSQEAEVSCPFIDNTYSCSGKLL 295
ECP+C + + C H C +CL+ +R + +SCP C+ +
Sbjct: 131 ECPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEISESRVNISCP------ECTERFN 184
Query: 296 EREIKALLTP----EDYQRFLDLGISIAENRSAFSYHCKTPDCKGWCFFED---DVNEFT 348
+I+ +L+ E Y+ F+ +A+ PDC+ WC D V F
Sbjct: 185 PHDIRLILSDDVLMEKYEEFMLRRWLVAD-----------PDCR-WCPAPDCGYAVIAFG 232
Query: 349 CPVCFHVNC----------LLCKAI-HEQMNCKEYQEDLALRAQNDVAARQTTEMLKVML 397
C C + C CK I H C +++ RAQ+ + +
Sbjct: 233 CASCPKLTCGREGCGTEFCYHCKQIWHPNQTCDAARQE---RAQSLRLRTIRSSSISYSQ 289
Query: 398 QQGEAMR----CPQCQI-VVQKKDG-CDWIRCTVCHTEICWV 433
+ G A CP+C +++ DG C+ + C VC E CW+
Sbjct: 290 ESGAAADDIKPCPRCAAYIIKMNDGSCNHMTCAVCGCEFCWL 331
>gi|187761373 ariadne ubiquitin-conjugating enzyme E2 binding
protein homolog 1 [Homo sapiens]
Length = 557
Score = 52.4 bits (124), Expect = 9e-07
Identities = 55/232 (23%), Positives = 91/232 (39%), Gaps = 35/232 (15%)
Query: 225 QLDQRSLVLNTEPAECPVCYSVLAPGEAVVLRECLHTFCRECLQGTIRNSQEAE-----V 279
Q++ RS + + C +CY + P EC H FC +C + E +
Sbjct: 174 QMNTRS---SAQDMPCQICY-LNYPNSYFTGLECGHKFCMQCWSEYLTTKIMEEGMGQTI 229
Query: 280 SCPFIDNTYSCSGKLLEREIKALLTPED----YQRFLDLGISIAENRSAFSYHCKTPDCK 335
SCP + C + + + L+T YQ + S E + C PDC
Sbjct: 230 SCP----AHGCDILVDDNTVMRLITDSKVKLKYQHLITN--SFVECNRLLKW-CPAPDCH 282
Query: 336 GWCFFE-DDVNEFTCPVCFHVNCLLC-KAIHEQMNCKEYQEDLALRAQNDVAARQTTEML 393
+ D C C C C + H+ + CK ++ + + +D +T+ +
Sbjct: 283 HVVKVQYPDAKPVRCK-CGRQFCFNCGENWHDPVKCKWLKKWIK-KCDDD---SETSNWI 337
Query: 394 KVMLQQGEAMRCPQCQIVVQKKDGCDWIRC--TVCHTEICWVTKGPRWGPGG 443
++ CP+C + ++K GC+ + C C E CWV GP W P G
Sbjct: 338 AANTKE-----CPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGP-WEPHG 383
>gi|169790973 parkin isoform 3 [Homo sapiens]
Length = 316
Score = 48.1 bits (113), Expect = 2e-05
Identities = 55/237 (23%), Positives = 79/237 (33%), Gaps = 26/237 (10%)
Query: 231 LVLNTEPAECPVCYSVLAPGEAVVLREC--LHTFCREC--LQGTIRNSQEAEVSCPFIDN 286
+ N+ C C V +P V++ +C H C +C L R + V P +
Sbjct: 80 IATNSRNITCITCTDVRSP---VLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGY 136
Query: 287 TYSCSGKLLEREIKAL-----LTPEDYQRFLDLGISIAENRSAFSYHCKTPDCKGWCFFE 341
+ C IK L L E Y R+ G + C P C E
Sbjct: 137 SLPCVAGCPNSLIKELHHFRILGEEQYNRYQQYGAEECVLQMG-GVLCPRPGCGAGLLPE 195
Query: 342 DDVNEFTCPV-----CFHVNCLLCKAIHEQMNCKEYQEDLALRAQNDVAARQTTEMLKVM 396
D + TC C C CK + + C E Q + E +
Sbjct: 196 PDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWE 255
Query: 397 LQQGEAMR-----CPQCQIVVQKKDGCDWIRC--TVCHTEICWVTKGPRWGPGGPGD 446
E ++ CP+C + V+K GC ++C C E CW G W GD
Sbjct: 256 AASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCW-NCGCEWNRVCMGD 311
>gi|169790971 parkin isoform 2 [Homo sapiens]
Length = 437
Score = 48.1 bits (113), Expect = 2e-05
Identities = 55/237 (23%), Positives = 79/237 (33%), Gaps = 26/237 (10%)
Query: 231 LVLNTEPAECPVCYSVLAPGEAVVLREC--LHTFCREC--LQGTIRNSQEAEVSCPFIDN 286
+ N+ C C V +P V++ +C H C +C L R + V P +
Sbjct: 201 IATNSRNITCITCTDVRSP---VLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGY 257
Query: 287 TYSCSGKLLEREIKAL-----LTPEDYQRFLDLGISIAENRSAFSYHCKTPDCKGWCFFE 341
+ C IK L L E Y R+ G + C P C E
Sbjct: 258 SLPCVAGCPNSLIKELHHFRILGEEQYNRYQQYGAEECVLQMG-GVLCPRPGCGAGLLPE 316
Query: 342 DDVNEFTCPV-----CFHVNCLLCKAIHEQMNCKEYQEDLALRAQNDVAARQTTEMLKVM 396
D + TC C C CK + + C E Q + E +
Sbjct: 317 PDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWE 376
Query: 397 LQQGEAMR-----CPQCQIVVQKKDGCDWIRC--TVCHTEICWVTKGPRWGPGGPGD 446
E ++ CP+C + V+K GC ++C C E CW G W GD
Sbjct: 377 AASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCW-NCGCEWNRVCMGD 432
>gi|169790969 parkin isoform 1 [Homo sapiens]
Length = 465
Score = 48.1 bits (113), Expect = 2e-05
Identities = 55/237 (23%), Positives = 79/237 (33%), Gaps = 26/237 (10%)
Query: 231 LVLNTEPAECPVCYSVLAPGEAVVLREC--LHTFCREC--LQGTIRNSQEAEVSCPFIDN 286
+ N+ C C V +P V++ +C H C +C L R + V P +
Sbjct: 229 IATNSRNITCITCTDVRSP---VLVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGY 285
Query: 287 TYSCSGKLLEREIKAL-----LTPEDYQRFLDLGISIAENRSAFSYHCKTPDCKGWCFFE 341
+ C IK L L E Y R+ G + C P C E
Sbjct: 286 SLPCVAGCPNSLIKELHHFRILGEEQYNRYQQYGAEECVLQMG-GVLCPRPGCGAGLLPE 344
Query: 342 DDVNEFTCPV-----CFHVNCLLCKAIHEQMNCKEYQEDLALRAQNDVAARQTTEMLKVM 396
D + TC C C CK + + C E Q + E +
Sbjct: 345 PDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQAYRVDERAAEQARWE 404
Query: 397 LQQGEAMR-----CPQCQIVVQKKDGCDWIRC--TVCHTEICWVTKGPRWGPGGPGD 446
E ++ CP+C + V+K GC ++C C E CW G W GD
Sbjct: 405 AASKETIKKTTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCW-NCGCEWNRVCMGD 460
>gi|148528975 LON peptidase N-terminal domain and ring finger 2
[Homo sapiens]
Length = 754
Score = 42.4 bits (98), Expect = 0.001
Identities = 46/160 (28%), Positives = 68/160 (42%), Gaps = 24/160 (15%)
Query: 90 SARNTSLNPQELQRERQLRMLEDLGFKDLTLQPRGPLEPGPPKPGVPQEPGRGQPDAVPE 149
+AR +L P+EL+ E ++ +G +D L P G P+ PG G P P
Sbjct: 84 AARLGALRPEELE-ELAGGLVRAVGLRDRPLSAENP-------GGEPEAPGEGGPAPEPR 135
Query: 150 PPPVGWQCPGC-TFINKP-TRP-GCEMCCR------ARPEAYQVPASYQ-------PDEE 193
P CP C ++KP T P G +C R ARP+ +V P E
Sbjct: 136 APRDLLGCPRCRRLLHKPVTLPCGLTVCKRCVEPGPARPQVRRVNVVLSGLLEKCFPAEC 195
Query: 194 ERARLAGEEEALRQYQQRKQQQQEGNYLQHVQLDQRSLVL 233
RLAG+ +L++ QQ + + + D SL+L
Sbjct: 196 RLRRLAGQARSLQRQQQPEAALLRCDQALELAPDDNSLLL 235
>gi|55953100 tubby like protein 4 isoform 1 [Homo sapiens]
Length = 1543
Score = 41.6 bits (96), Expect = 0.002
Identities = 42/170 (24%), Positives = 62/170 (36%), Gaps = 30/170 (17%)
Query: 76 GVRQNGDSAYLYLLSARNTSLNPQELQRERQLRMLEDLGFKDLTLQPRGPLEP-----GP 130
G Q D++ ++ RN RE L+M + L PR PL+P G
Sbjct: 973 GAAQRSDNSLIHATLRRNN--------REATLKMAQ------LADSPRAPLQPLAKSKGG 1018
Query: 131 PKPGVPQEPGRGQPDAVPEPPPVGWQCPGCTFINKPTRPGCEMCCRARPEAYQVPASY-- 188
P V Q P R PPP + C C+ ++PG + A +SY
Sbjct: 1019 PGGVVTQLPAR--------PPPALYTCSQCSGTGPSSQPGASLAHTASASPLASQSSYSL 1070
Query: 189 -QPDEEERARLAGEEEALRQYQQRKQQQQEGNYLQHVQLDQRSLVLNTEP 237
P + R R A + + Q Q L+H L + ++ L P
Sbjct: 1071 LSPPDSARDRTDYVNSAFTEDEALSQHCQLEKPLRHPPLPEAAVTLKRPP 1120
>gi|15812226 transcriptional regulating factor 1 [Homo sapiens]
Length = 1200
Score = 41.2 bits (95), Expect = 0.002
Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 18/115 (15%)
Query: 111 EDLGFKDLTLQPRGPLEPGPPKPGVPQEPGRGQ---PDAVPEPPPVGWQCPGCTFINKPT 167
++ G K L QP+ PL P PP P PQ P + P +P PV P KP+
Sbjct: 545 QEEGEKVLPPQPQPPLPPPPPPPPPPQLPPEAESLTPMVMPVSVPVKLLPP------KPS 598
Query: 168 RPGCEMCCRARPEAYQVPASYQPDEE---------ERARLAGEEEALRQYQQRKQ 213
G A P A PAS D+E + + EE L+ Q++K+
Sbjct: 599 SQGFTNSTVAAPSARDKPASSMSDDEMPVLEIPRKHQPSVPKAEEPLKTVQEKKK 653
>gi|58761530 polycomb group ring finger 6 isoform a [Homo sapiens]
Length = 350
Score = 41.2 bits (95), Expect = 0.002
Identities = 38/153 (24%), Positives = 63/153 (41%), Gaps = 32/153 (20%)
Query: 130 PPKPGVPQEPGRGQPDAVPEPPPVGWQCPGCTFINKPTRPGCEMCCRARPEAYQVPASYQ 189
PP P V P A+ P G + P +++ PGC +RP + S
Sbjct: 24 PPPPPV-------SPPALTPAPAAGEEGPAP--LSETGAPGCS---GSRPPELEPERSLG 71
Query: 190 PDEEERARLAGEEEALRQYQQ-RKQQQQEGNYLQHVQL----------DQRSLVLN---- 234
R R E+E L + ++ +++++E + H L D+ ++N
Sbjct: 72 ---RFRGRFEDEDEELEEEEELEEEEEEEEEDMSHFSLRLEGGRQDSEDEEERLINLSEL 128
Query: 235 TEPAECPVCYSVLAPGEAVVLRECLHTFCRECL 267
T C +C L +A + ECLHTFC+ C+
Sbjct: 129 TPYILCSICKGYLI--DATTITECLHTFCKSCI 159
>gi|37655165 polycomb group ring finger 6 isoform b [Homo sapiens]
Length = 275
Score = 41.2 bits (95), Expect = 0.002
Identities = 38/153 (24%), Positives = 63/153 (41%), Gaps = 32/153 (20%)
Query: 130 PPKPGVPQEPGRGQPDAVPEPPPVGWQCPGCTFINKPTRPGCEMCCRARPEAYQVPASYQ 189
PP P V P A+ P G + P +++ PGC +RP + S
Sbjct: 24 PPPPPV-------SPPALTPAPAAGEEGPAP--LSETGAPGCS---GSRPPELEPERSLG 71
Query: 190 PDEEERARLAGEEEALRQYQQ-RKQQQQEGNYLQHVQL----------DQRSLVLN---- 234
R R E+E L + ++ +++++E + H L D+ ++N
Sbjct: 72 ---RFRGRFEDEDEELEEEEELEEEEEEEEEDMSHFSLRLEGGRQDSEDEEERLINLSEL 128
Query: 235 TEPAECPVCYSVLAPGEAVVLRECLHTFCRECL 267
T C +C L +A + ECLHTFC+ C+
Sbjct: 129 TPYILCSICKGYLI--DATTITECLHTFCKSCI 159
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,072,422
Number of Sequences: 37866
Number of extensions: 1313771
Number of successful extensions: 11779
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 370
Number of HSP's that attempted gapping in prelim test: 9920
Number of HSP's gapped (non-prelim): 2017
length of query: 468
length of database: 18,247,518
effective HSP length: 106
effective length of query: 362
effective length of database: 14,233,722
effective search space: 5152607364
effective search space used: 5152607364
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.