Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LRRFIP2 Sequence: fasta or formatted (400aa) NCBI GI: 8923224
Description:

leucine rich repeat (in FLII) interacting protein 2 isoform 2

Referenced in:

Leucine-rich Repeat Family

Other entries for this name:
alt prot [424aa] leucine rich repeat (in FLII) interacting protein 2 isoform 3
alt prot [721aa] leucine rich repeat (in FLII) interacting protein 2 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         36           2
 C cysteine            0.5          2           1
 D aspartate           5.5         22           1
 E glutamate          14.0         56           3
 F phenylalanine       1.0          4           1
 G glycine             4.5         18           1
 H histidine           1.2          5           1
 I isoleucine          3.8         15           2
 K lysine              8.5         34           2
 L leucine            10.5         42           2
 M methionine          2.5         10           1
 N asparagine          4.0         16           2
 P proline             2.2          9           1
 Q glutamine           6.2         25           2
 R arginine            8.5         34           2
 S serine              8.0         32           2
 T threonine           4.2         17           2
 V valine              4.0         16           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.8          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine rich repeat (in FLII) interacting protein 2 i... 
LRRFIP2               0.982   leucine rich repeat (in FLII) interacting protein 2...
LRRFIP2               0.698   leucine rich repeat (in FLII) interacting protein 2 i...
LRRFIP1               0.537   leucine rich repeat (in FLII) interacting protein 1...
LRRFIP1               0.402   leucine rich repeat (in FLII) interacting protein 1...
LRRFIP1               0.279   leucine rich repeat (in FLII) interacting protein 1...
LRRFIP1               0.256   leucine rich repeat (in FLII) interacting protein 1...
LRRFIP1               0.240   leucine rich repeat (in FLII) interacting protein 1...
GOLGB1                0.066   golgi autoantigen, golgin subfamily b, macrogolgin ...
CGNL1                 0.055   cingulin-like 1 
CLIP1                 0.053   restin isoform b 
CLIP1                 0.053   restin isoform a 
MYH9                  0.051   myosin, heavy polypeptide 9, non-muscle 
NUMA1                 0.050   nuclear mitotic apparatus protein 1 
CROCC                 0.050   ciliary rootlet coiled-coil 
MYH8                  0.049   myosin, heavy chain 8, skeletal muscle, perinatal [...
MYH3                  0.049   myosin, heavy chain 3, skeletal muscle, embryonic [H...
MYH10                 0.047   myosin, heavy polypeptide 10, non-muscle 
LOC653061             0.046   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653061             0.046   PREDICTED: similar to Golgin subfamily A member 8-l...
AKAP9                 0.046   A-kinase anchor protein 9 isoform 3 
MYH7                  0.046   myosin, heavy chain 7, cardiac muscle, beta 
EEA1                  0.045   early endosome antigen 1, 162kD 
GCC2                  0.045   GRIP and coiled-coil domain-containing 2 
PLEC1                 0.045   plectin 1 isoform 11 
PLEC1                 0.045   plectin 1 isoform 10 
PLEC1                 0.045   plectin 1 isoform 8 
PLEC1                 0.045   plectin 1 isoform 7 
PLEC1                 0.045   plectin 1 isoform 6 
PLEC1                 0.045   plectin 1 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press